At1g01010	chr1:000003760	0.0	W/3760-3913,3996-4276,4486-4605,4706-5095,5174-5326,5439-5630	AT1G01010.1 CDS  gene_syn ANAC001, Arabidopsis NAC domain containing protein 1, T25K16.1, T25K16_1  gene ANAC001  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC001 (Arabidopsis NAC domain containing protein 1); transcription factor  note Arabidopsis NAC domain containing protein 1 (ANAC001); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac069 (Arabidopsis NAC domain containing protein 69); transcription factor (TAIR:AT4G01550.1); Has 1331 Blast hits to 1329 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1331; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01010.1p  transcript_id AT1G01010.1  protein_id AT1G01010.1p  transcript_id AT1G01010.1  
At1g01020	chr1:000006915	0.0	C/6915-7069,7157-7232,7384-7450,7564-7649,7762-7835,7942-7987,8236-8325,8417-8464,8571-8666	AT1G01020.1 CDS  gene_syn ARV1, T25K16.2, T25K16_2  gene ARV1  go_component endoplasmic reticulum|GO:0005783|16725371|IDA  go_component membrane|GO:0016020||ISS  go_process sphingolipid metabolic process|GO:0006665|16725371|IMP  go_process sterol metabolic process|GO:0016125|16725371|IMP  go_function molecular_function|GO:0003674||ND  product ARV1  note ARV1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sterol metabolic process, sphingolipid metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: male gametophyte; EXPRESSED DURING: seedling growth, fertilized ovule stage; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: ARV2 (TAIR:AT4G01510.1); Has 218 Blast hits to 218 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 72; Plants - 18; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G01020.1p  transcript_id AT1G01020.1  protein_id AT1G01020.1p  transcript_id AT1G01020.1  
At1g01020	chr1:000007315	0.0	C/7315-7450,7564-7649,7762-7835,7942-7987,8236-8325,8417-8464,8571-8666	AT1G01020.2 CDS  gene_syn ARV1, T25K16.2, T25K16_2  gene ARV1  go_component endoplasmic reticulum|GO:0005783|16725371|IDA  go_component membrane|GO:0016020||ISS  go_process sphingolipid metabolic process|GO:0006665|16725371|IMP  go_process sterol metabolic process|GO:0016125|16725371|IMP  go_function molecular_function|GO:0003674||ND  product ARV1  note ARV1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sterol metabolic process, sphingolipid metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: male gametophyte; EXPRESSED DURING: seedling growth, fertilized ovule stage; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: ARV2 (TAIR:AT4G01510.1); Has 215 Blast hits to 215 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 72; Plants - 18; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G01020.2p  transcript_id AT1G01020.2  protein_id AT1G01020.2p  transcript_id AT1G01020.2  
At1g01030	chr1:000011864	0.0	C/11864-12940	AT1G01030.1 CDS  gene_syn NGA3, NGATHA3, T25K16.3, T25K16_3  gene NGA3  go_component cellular_component|GO:0005575||ND  go_process flower development|GO:0009908|16603651|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process leaf development|GO:0048366|16603651|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product NGA3 (NGATHA3); transcription factor  note NGATHA3 (NGA3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, leaf development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: NGA1 (NGATHA1); transcription factor (TAIR:AT2G46870.1); Has 730 Blast hits to 729 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 730; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01030.1p  transcript_id AT1G01030.1  protein_id AT1G01030.1p  transcript_id AT1G01030.1  
At1g01040	chr1:000023519	0.0	W/23519-24451,24542-24655,24752-24962,25041-25435,25524-25743,25825-25997,26081-26203,26292-26452,26543-26776,26862-27012,27099-27281,27372-27533,27618-27713,27803-28431,28708-28805,28890-29080,29160-30065,30147-30311,30410-30816,30902-31079	AT1G01040.1 CDS  gene_syn ABNORMAL SUSPENSOR 1, ASU1, ATDCL1, CAF, CARPEL FACTORY, DCL1, DICER-LIKE 1, EMB60, EMB76, EMBRYO DEFECTIVE 60, EMBRYO DEFECTIVE 76, SHORT INTEGUMENTS 1, SIN1, SUS1, SUSPENSOR 1, T25K16.4, T25K16_4  gene DCL1  function Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.  go_component nucleus|GO:0005634|15821876|IDA  go_component nucleus|GO:0005634|17369351|IDA  go_component nuclear dicing body|GO:0010445|17442570|IDA  go_process cytokinesis|GO:0000910|10556049|IMP  go_process RNA processing|GO:0006396|12225663|ISS  go_process virus induced gene silencing|GO:0009616|17090584|IMP  go_process embryonic pattern specification|GO:0009880|8787738|IMP  go_process flower development|GO:0009908|8787738|TAS  go_process suspensor development|GO:0010098||IMP  go_process vegetative to reproductive phase transition|GO:0010228|8787738|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16699516|IMP  go_process RNA interference, production of lsiRNA|GO:0010599|18003861|IMP  go_process RNA interference, production of siRNA|GO:0030422|17558406|IMP  go_process primary microRNA processing|GO:0031053|16144699|TAS  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|16810317|IGI  go_process gene silencing by miRNA, mRNA cleavage|GO:0035279|15851028|IMP  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function ribonuclease III activity|GO:0004525||ISS  go_function protein binding|GO:0005515|15821876|IPI  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DCL1 (DICER-LIKE 1); ATP-dependent helicase/ double-stranded RNA binding / protein binding / ribonuclease III  note DICER-LIKE 1 (DCL1); FUNCTIONS IN: double-stranded RNA binding, protein binding, ribonuclease III activity, ATP-dependent helicase activity; INVOLVED IN: in 13 processes; LOCATED IN: nuclear dicing body, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA binding (InterPro:IPR001159), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ribonuclease III family protein (TAIR:AT3G43920.3); Has 14621 Blast hits to 11644 proteins in 1716 species: Archae - 229; Bacteria - 6287; Metazoa - 2944; Fungi - 1156; Plants - 663; Viruses - 45; Other Eukaryotes - 3297 (source: NCBI BLink).  protein_id AT1G01040.1p  transcript_id AT1G01040.1  protein_id AT1G01040.1p  transcript_id AT1G01040.1  
At1g01046	chr1:000028500	0.0	W/28500-28706	AT1G01046.1 miRNA  gene_syn MICRORNA838A, MIR838A  gene MIR838A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUCUUCUACUUCUUGCACA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR838A (MICRORNA838A); miRNA  transcript_id AT1G01046.1  
At1g01050	chr1:000031382	0.0	C/31382-31424,31521-31602,31693-31813,31933-31998,32088-32195,32282-32347,32431-32459,32547-32670	AT1G01050.1 CDS  gene_syn Arabidopsis thaliana pyrophosphorylase 1, AtPPa1, T25K16.5, T25K16_5  gene AtPPa1  function Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate.  go_process phosphate metabolic process|GO:0006796||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component membrane|GO:0016020||ISS  go_process metabolic process|GO:0008152||ISS  go_function inorganic diphosphatase activity|GO:0004427||IDA  product AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1); inorganic diphosphatase  note Arabidopsis thaliana pyrophosphorylase 1 (AtPPa1); FUNCTIONS IN: inorganic diphosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3); inorganic diphosphatase/ pyrophosphatase (TAIR:AT2G46860.1); Has 4131 Blast hits to 4131 proteins in 1146 species: Archae - 108; Bacteria - 2770; Metazoa - 199; Fungi - 190; Plants - 181; Viruses - 0; Other Eukaryotes - 683 (source: NCBI BLink).  protein_id AT1G01050.1p  transcript_id AT1G01050.1  protein_id AT1G01050.1p  transcript_id AT1G01050.1  
At1g01060	chr1:000033992	0.0	C/33992-34327,34401-35471,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.4 CDS  gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6  gene LHY  function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of circadian rhythm|GO:0042752|12007421|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9657154|ISS  product LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor  note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT2G46830.1); Has 1924 Blast hits to 1432 proteins in 206 species: Archae - 2; Bacteria - 186; Metazoa - 258; Fungi - 143; Plants - 656; Viruses - 30; Other Eukaryotes - 649 (source: NCBI BLink).  protein_id AT1G01060.4p  transcript_id AT1G01060.4  protein_id AT1G01060.4p  transcript_id AT1G01060.4  
At1g01060	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.1 CDS  gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6  gene LHY  function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of circadian rhythm|GO:0042752|12007421|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9657154|ISS  product LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor  note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT2G46830.1); Has 1820 Blast hits to 1407 proteins in 207 species: Archae - 2; Bacteria - 191; Metazoa - 253; Fungi - 135; Plants - 657; Viruses - 29; Other Eukaryotes - 553 (source: NCBI BLink).  protein_id AT1G01060.1p  transcript_id AT1G01060.1  protein_id AT1G01060.1p  transcript_id AT1G01060.1  
At1g01060	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.2 CDS  gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6  gene LHY  function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of circadian rhythm|GO:0042752|12007421|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9657154|ISS  product LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor  note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT2G46830.1); Has 1820 Blast hits to 1407 proteins in 207 species: Archae - 2; Bacteria - 191; Metazoa - 253; Fungi - 135; Plants - 657; Viruses - 29; Other Eukaryotes - 553 (source: NCBI BLink).  protein_id AT1G01060.2p  transcript_id AT1G01060.2  protein_id AT1G01060.2p  transcript_id AT1G01060.2  
At1g01060	chr1:000033992	0.0	C/33992-34327,34401-35474,35567-35647,35730-35963,36624-36685,36810-36921,37023-37061	AT1G01060.3 CDS  gene_syn LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1, T25K16.6, T25K16_6  gene LHY  function LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process regulation of circadian rhythm|GO:0042752|12007421|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_process long-day photoperiodism, flowering|GO:0048574|19011118|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9657154|ISS  product LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor  note LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (TAIR:AT2G46830.1); Has 1820 Blast hits to 1407 proteins in 207 species: Archae - 2; Bacteria - 191; Metazoa - 253; Fungi - 135; Plants - 657; Viruses - 29; Other Eukaryotes - 553 (source: NCBI BLink).  protein_id AT1G01060.3p  transcript_id AT1G01060.3  protein_id AT1G01060.3p  transcript_id AT1G01060.3  
At1g01070	chr1:000038898	0.0	C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40535,40675-40877	AT1G01070.1 CDS  gene_syn T25K16.7, T25K16_7  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G11460.1); Has 1705 Blast hits to 1692 proteins in 315 species: Archae - 18; Bacteria - 780; Metazoa - 4; Fungi - 6; Plants - 641; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT1G01070.1p  transcript_id AT1G01070.1  protein_id AT1G01070.1p  transcript_id AT1G01070.1  
At1g01070	chr1:000038898	0.0	C/38898-39054,39136-39287,39409-39814,40213-40329,40473-40597	AT1G01070.2 CDS  gene_syn T25K16.7, T25K16_7  go_component membrane|GO:0016020||IEA  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G11450.2); Has 1106 Blast hits to 1099 proteins in 165 species: Archae - 10; Bacteria - 379; Metazoa - 4; Fungi - 6; Plants - 619; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT1G01070.2p  transcript_id AT1G01070.2  protein_id AT1G01070.2p  transcript_id AT1G01070.2  
At1g01073	chr1:000044677	0.0	W/44677-44787	AT1G01073.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system.  protein_id AT1G01073.1p  transcript_id AT1G01073.1  protein_id AT1G01073.1p  transcript_id AT1G01073.1  
At1g01080	chr1:000045503	0.0	C/45503-45559,45646-45954,46044-46145,46373-46789	AT1G01080.2 CDS  gene_syn T25K16.19, T25K16_19  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative  note 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CP33; RNA binding (TAIR:AT3G52380.1); Has 17909 Blast hits to 11804 proteins in 598 species: Archae - 16; Bacteria - 1315; Metazoa - 10536; Fungi - 1741; Plants - 2530; Viruses - 0; Other Eukaryotes - 1771 (source: NCBI BLink).  protein_id AT1G01080.2p  transcript_id AT1G01080.2  protein_id AT1G01080.2p  transcript_id AT1G01080.2  
At1g01080	chr1:000045503	0.0	C/45503-45559,45646-45954,46044-46145,46376-46789	AT1G01080.1 CDS  gene_syn T25K16.19, T25K16_19  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative  note 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative (TAIR:AT5G50250.1); Has 19434 Blast hits to 12572 proteins in 610 species: Archae - 14; Bacteria - 1626; Metazoa - 10959; Fungi - 1964; Plants - 2851; Viruses - 0; Other Eukaryotes - 2020 (source: NCBI BLink).  protein_id AT1G01080.1p  transcript_id AT1G01080.1  protein_id AT1G01080.1p  transcript_id AT1G01080.1  
At1g01090	chr1:000047705	0.0	C/47705-47982,48075-48852,48936-49166	AT1G01090.1 CDS  gene_syn PDH-E1 ALPHA, PYRUVATE DEHYDROGENASE E1 ALPHA, T25K16.8, T25K16_8  gene PDH-E1 ALPHA  function pyruvate dehydrogenase E1 alpha subunit  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process glycolysis|GO:0006096||IEA  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_component plastid|GO:0009536|9393637|ISS  go_process metabolic process|GO:0008152||ISS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739|9393637|ISS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS  product PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring)  note PYRUVATE DEHYDROGENASE E1 ALPHA (PDH-E1 ALPHA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: oxidation reduction, glycolysis, metabolic process; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: AT-E1 ALPHA; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring) (TAIR:AT1G59900.1); Has 6672 Blast hits to 6670 proteins in 1055 species: Archae - 51; Bacteria - 3109; Metazoa - 469; Fungi - 156; Plants - 117; Viruses - 0; Other Eukaryotes - 2770 (source: NCBI BLink).  protein_id AT1G01090.1p  transcript_id AT1G01090.1  protein_id AT1G01090.1p  transcript_id AT1G01090.1  
At1g01100	chr1:000050284	0.0	C/50284-50337,50419-50447,50496-50631,50883-50954	AT1G01100.3 CDS  gene_syn T25K16.9, T25K16_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1A)  note 60S acidic ribosomal protein P1 (RPP1A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1C) (TAIR:AT5G47700.2); Has 1119 Blast hits to 1119 proteins in 234 species: Archae - 1; Bacteria - 0; Metazoa - 430; Fungi - 289; Plants - 234; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT1G01100.3p  transcript_id AT1G01100.3  protein_id AT1G01100.3p  transcript_id AT1G01100.3  
At1g01100	chr1:000050284	0.0	C/50284-50337,50419-50631,50883-50954	AT1G01100.1 CDS  gene_syn T25K16.9, T25K16_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1A)  note 60S acidic ribosomal protein P1 (RPP1A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1C) (TAIR:AT5G47700.2); Has 1664 Blast hits to 1663 proteins in 290 species: Archae - 48; Bacteria - 0; Metazoa - 686; Fungi - 343; Plants - 315; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G01100.1p  transcript_id AT1G01100.1  protein_id AT1G01100.1p  transcript_id AT1G01100.1  
At1g01100	chr1:000050284	0.0	C/50284-50337,50419-50631,50883-50954	AT1G01100.2 CDS  gene_syn T25K16.9, T25K16_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1A)  note 60S acidic ribosomal protein P1 (RPP1A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1C) (TAIR:AT5G47700.2); Has 1664 Blast hits to 1663 proteins in 290 species: Archae - 48; Bacteria - 0; Metazoa - 686; Fungi - 343; Plants - 315; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G01100.2p  transcript_id AT1G01100.2  protein_id AT1G01100.2p  transcript_id AT1G01100.2  
At1g01100	chr1:000050284	0.0	C/50284-50337,50419-50631,50883-50954	AT1G01100.4 CDS  gene_syn T25K16.9, T25K16_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational elongation|GO:0006414||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translational elongation|GO:0006414||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S acidic ribosomal protein P1 (RPP1A)  note 60S acidic ribosomal protein P1 (RPP1A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P1 (RPP1C) (TAIR:AT5G47700.2); Has 1664 Blast hits to 1663 proteins in 290 species: Archae - 48; Bacteria - 0; Metazoa - 686; Fungi - 343; Plants - 315; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G01100.4p  transcript_id AT1G01100.4  protein_id AT1G01100.4p  transcript_id AT1G01100.4  
At1g01110	chr1:000052239	0.0	W/52239-52346,52434-52730,52938-53183,53484-53624,53703-54494	AT1G01110.2 CDS  gene_syn IQ-domain 18, IQD18, T25K16.10, T25K16_10  gene IQD18  go_function molecular_function|GO:0003674||ND  product IQD18 (IQ-domain 18)  note IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd17 (IQ-domain 17); calmodulin binding (TAIR:AT4G00820.1); Has 1105 Blast hits to 644 proteins in 73 species: Archae - 0; Bacteria - 11; Metazoa - 159; Fungi - 31; Plants - 454; Viruses - 5; Other Eukaryotes - 445 (source: NCBI BLink).  protein_id AT1G01110.2p  transcript_id AT1G01110.2  protein_id AT1G01110.2p  transcript_id AT1G01110.2  
At1g01110	chr1:000053022	0.0	W/53022-53183,53484-53624,53703-54494	AT1G01110.1 CDS  gene_syn IQ-domain 18, IQD18, T25K16.10, T25K16_10  gene IQD18  go_component mitochondrion|GO:0005739||IEA  go_function molecular_function|GO:0003674||ND  product IQD18 (IQ-domain 18)  note IQ-domain 18 (IQD18); FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: iqd17 (IQ-domain 17); calmodulin binding (TAIR:AT4G00820.1); Has 864 Blast hits to 431 proteins in 46 species: Archae - 0; Bacteria - 10; Metazoa - 112; Fungi - 16; Plants - 278; Viruses - 4; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT1G01110.1p  transcript_id AT1G01110.1  protein_id AT1G01110.1p  transcript_id AT1G01110.1  
At1g01115	chr1:000056624	0.0	W/56624-56740	AT1G01115.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system.  protein_id AT1G01115.1p  transcript_id AT1G01115.1  protein_id AT1G01115.1p  transcript_id AT1G01115.1  
At1g01120	chr1:000057392	0.0	C/57392-58978	AT1G01120.1 CDS  gene_syn 3-KETOACYL-COA SYNTHASE 1, KCS1, T25K16.11, T25K16_11  gene KCS1  function Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_component membrane|GO:0016020|10074711|ISS  go_process very-long-chain fatty acid metabolic process|GO:0000038|10074711|IDA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_process wax biosynthetic process|GO:0010025|10074711|IDA  go_process wax biosynthetic process|GO:0010025|10074711|IMP  go_process fatty acid elongation|GO:0030497|10074711|IDA  go_process cuticle development|GO:0042335|10074711|IMP  go_function acyltransferase activity|GO:0008415||ISS  go_function fatty acid elongase activity|GO:0009922|10074711|IDA  product KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase/ fatty acid elongase  note 3-KETOACYL-COA SYNTHASE 1 (KCS1); FUNCTIONS IN: fatty acid elongase activity, acyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosolic ribosome, endoplasmic reticulum, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS11 (3-KETOACYL-COA SYNTHASE 11); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G26640.1); Has 2729 Blast hits to 2723 proteins in 680 species: Archae - 0; Bacteria - 860; Metazoa - 0; Fungi - 5; Plants - 1724; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G01120.1p  transcript_id AT1G01120.1  protein_id AT1G01120.1p  transcript_id AT1G01120.1  
At1g01130	chr1:000061963	0.0	C/61963-62124,63431-63811	AT1G01130.1 CDS  gene_syn F6F3.33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 104 Blast hits to 104 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01130.1p  transcript_id AT1G01130.1  protein_id AT1G01130.1p  transcript_id AT1G01130.1  
At1g01140	chr1:000064398	0.0	C/64398-64475,64570-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512	AT1G01140.3 CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 9, CIPK9, F6F3.28, PKS6, PROTEIN KINASE 6, SNF1-RELATED PROTEIN KINASE 3.12, SnRK3.12  gene CIPK9  function Encodes a CBL-interacting protein kinase with similarity to SOS2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase/ protein binding / protein serine/threonine kinase (TAIR:AT1G30270.1); Has 95177 Blast hits to 93611 proteins in 3054 species: Archae - 70; Bacteria - 8657; Metazoa - 41054; Fungi - 8702; Plants - 18053; Viruses - 477; Other Eukaryotes - 18164 (source: NCBI BLink).  protein_id AT1G01140.3p  transcript_id AT1G01140.3  protein_id AT1G01140.3p  transcript_id AT1G01140.3  
At1g01140	chr1:000064398	0.0	C/64398-64475,64582-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65733-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512	AT1G01140.2 CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 9, CIPK9, F6F3.28, PKS6, PROTEIN KINASE 6, SNF1-RELATED PROTEIN KINASE 3.12, SnRK3.12  gene CIPK9  function Encodes a CBL-interacting protein kinase with similarity to SOS2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase/ protein binding / protein serine/threonine kinase (TAIR:AT1G30270.1); Has 95087 Blast hits to 93593 proteins in 3050 species: Archae - 70; Bacteria - 8658; Metazoa - 41038; Fungi - 8663; Plants - 18026; Viruses - 477; Other Eukaryotes - 18155 (source: NCBI BLink).  protein_id AT1G01140.2p  transcript_id AT1G01140.2  protein_id AT1G01140.2p  transcript_id AT1G01140.2  
At1g01140	chr1:000064398	0.0	C/64398-64475,64582-64656,64751-64807,64901-65017,65110-65217,65331-65456,65563-65652,65739-65864,66107-66160,66262-66342,66450-66557,66678-66749,66835-66897,67324-67512	AT1G01140.1 CDS  gene_syn CBL-INTERACTING PROTEIN KINASE 9, CIPK9, F6F3.28, PKS6, PROTEIN KINASE 6, SNF1-RELATED PROTEIN KINASE 3.12, SnRK3.12  gene CIPK9  function Encodes a CBL-interacting protein kinase with similarity to SOS2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 9 (CIPK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase/ protein binding / protein serine/threonine kinase (TAIR:AT1G30270.1); Has 95174 Blast hits to 93608 proteins in 3054 species: Archae - 70; Bacteria - 8657; Metazoa - 41048; Fungi - 8702; Plants - 18054; Viruses - 477; Other Eukaryotes - 18166 (source: NCBI BLink).  protein_id AT1G01140.1p  transcript_id AT1G01140.1  protein_id AT1G01140.1p  transcript_id AT1G01140.1  
At1g01150	chr1:000070115	0.0	C/70115-70285,70840-70968,71041-71721,71942-71998	AT1G01150.1 CDS  gene_syn F6F3.30  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product DNA binding / protein binding / zinc ion binding  note DNA binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRFL10 (TRF-LIKE 10); DNA binding (TAIR:AT5G03780.1); Has 49 Blast hits to 44 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G01150.1p  transcript_id AT1G01150.1  protein_id AT1G01150.1p  transcript_id AT1G01150.1  
At1g01160	chr1:000072583	0.0	W/72583-72669,72915-73016,73087-73163,73287-73395,73488-73740,73822-73883	AT1G01160.2 CDS  gene_syn F6F3.29, GIF2, GRF1-INTERACTING FACTOR 2  gene GIF2  function Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA  go_component nucleus|GO:0005634|15326298|ISS  go_process biological_process|GO:0008150||ND  go_function transcription coactivator activity|GO:0003713|12974814|ISS  go_function protein binding|GO:0005515|15326298|IPI  product SSXT protein-related / transcription co-activator-related  note GRF1-INTERACTING FACTOR 2 (GIF2); FUNCTIONS IN: transcription coactivator activity, protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GIF3 (GRF1-INTERACTING FACTOR 3); protein binding / transcription coactivator (TAIR:AT4G00850.1).  protein_id AT1G01160.2p  transcript_id AT1G01160.2  protein_id AT1G01160.2p  transcript_id AT1G01160.2  
At1g01160	chr1:000072583	0.0	W/72583-72669,73087-73163,73287-73395,73488-73740,73822-73883	AT1G01160.1 CDS  gene_syn F6F3.29, GIF2, GRF1-INTERACTING FACTOR 2  gene GIF2  function Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA  go_component nucleus|GO:0005634|15326298|ISS  go_process biological_process|GO:0008150||ND  go_function transcription coactivator activity|GO:0003713|12974814|ISS  go_function protein binding|GO:0005515|15326298|IPI  product SSXT protein-related / transcription co-activator-related  note GRF1-INTERACTING FACTOR 2 (GIF2); FUNCTIONS IN: transcription coactivator activity, protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GIF3 (GRF1-INTERACTING FACTOR 3); protein binding / transcription coactivator (TAIR:AT4G00850.1); Has 334 Blast hits to 334 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 245; Fungi - 17; Plants - 53; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G01160.1p  transcript_id AT1G01160.1  protein_id AT1G01160.1p  transcript_id AT1G01160.1  
At1g01170	chr1:000074105	0.0	C/74105-74250,74338-74443	AT1G01170.1 CDS  gene_syn F6F3.32  go_component mitochondrion|GO:0005739|15276431|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product ozone-responsive stress-related protein, putative  note ozone-responsive stress-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: ATOZI1 (TAIR:AT4G00860.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01170.1p  transcript_id AT1G01170.1  protein_id AT1G01170.1p  transcript_id AT1G01170.1  
At1g01170	chr1:000074105	0.0	C/74105-74250,74338-74443	AT1G01170.2 CDS  gene_syn F6F3.32  go_component membrane|GO:0016020|17432890|IDA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product ozone-responsive stress-related protein, putative  note ozone-responsive stress-related protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1138 (InterPro:IPR009515); BEST Arabidopsis thaliana protein match is: ATOZI1 (TAIR:AT4G00860.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01170.2p  transcript_id AT1G01170.2  protein_id AT1G01170.2p  transcript_id AT1G01170.2  
At1g01180	chr1:000075633	0.0	W/75633-76547,76814-76951,77031-77280,77313-77446	AT1G01180.1 CDS  gene_syn F6F3.5  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, hypocotyl; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19270.1); Has 228 Blast hits to 228 proteins in 32 species: Archae - 0; Bacteria - 48; Metazoa - 2; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G01180.1p  transcript_id AT1G01180.1  protein_id AT1G01180.1p  transcript_id AT1G01180.1  
At1g01183	chr1:000078932	0.0	C/78932-79032	AT1G01183.1 miRNA  gene_syn MICRORNA 165, MICRORNA 165A, MIR165, MIR165A  gene MIR165A  function Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUCCCC  go_component cellular_component|GO:0005575||ND  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR165A (MICRORNA 165A); miRNA  transcript_id AT1G01183.1  
At1g01190	chr1:000083045	0.0	C/83045-83671,83884-84864	AT1G01190.1 CDS  gene_syn CYP78A8, CYTOCHROME P450, FAMILY 78, SUBFAMILY A, POLYPEPTIDE 8, F6F3.25  gene CYP78A8  function member of CYP78A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP78A8; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP78A8; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP78A6; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G46660.1); Has 22842 Blast hits to 22770 proteins in 1258 species: Archae - 21; Bacteria - 2127; Metazoa - 10175; Fungi - 4205; Plants - 5481; Viruses - 3; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G01190.1p  transcript_id AT1G01190.1  protein_id AT1G01190.1p  transcript_id AT1G01190.1  
At1g01200	chr1:000086715	0.0	C/86715-87162,87880-88145	AT1G01200.1 CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A3, ATRAB-A3, ATRABA3, F6F3.1, F6F3_1  gene ATRABA3  go_component nucleus|GO:0005634|14617066|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_component endosome|GO:0005768|18239134|IDA  go_component cell plate|GO:0009504|18239134|IDA  go_function GTP binding|GO:0005525||ISS  product ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG A3 (ATRABA3); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, nucleus, cell plate; EXPRESSED IN: lateral root cap, hypocotyl, flower, root, epidermis; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ATRABA4C; GTP binding (TAIR:AT5G47960.1); Has 21819 Blast hits to 21794 proteins in 608 species: Archae - 15; Bacteria - 95; Metazoa - 12212; Fungi - 2576; Plants - 2001; Viruses - 19; Other Eukaryotes - 4901 (source: NCBI BLink).  protein_id AT1G01200.1p  transcript_id AT1G01200.1  protein_id AT1G01200.1p  transcript_id AT1G01200.1  
At1g01210	chr1:000088977	0.0	W/88977-89081,89173-89263,89405-89529	AT1G01210.1 CDS  gene_syn F6F3.2, F6F3_2  go_process transcription|GO:0006350||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_component nucleus|GO:0005634||ISS  go_process RNA elongation|GO:0006354||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product DNA-directed RNA polymerase III family protein  note DNA-directed RNA polymerase III family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15 kDa subunit (InterPro:IPR001529); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase III family protein (TAIR:AT4G07950.1); Has 790 Blast hits to 790 proteins in 227 species: Archae - 146; Bacteria - 0; Metazoa - 227; Fungi - 178; Plants - 60; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).  protein_id AT1G01210.1p  transcript_id AT1G01210.1  protein_id AT1G01210.1p  transcript_id AT1G01210.1  
At1g01220	chr1:000091750	0.0	W/91750-92070,92270-92501,92569-92933,93045-93171,93271-94281,94357-95075,95160-95552	AT1G01220.1 CDS  gene_syn F6F3.3, F6F3_3  go_component cytoplasm|GO:0005737||IEA  go_process metabolic process|GO:0008152||IEA  go_process phosphorylation|GO:0016310||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_function galactokinase activity|GO:0004335||ISS  go_function ATP binding|GO:0005524||ISS  product GHMP kinase-related  note GHMP kinase-related; FUNCTIONS IN: kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding; INVOLVED IN: metabolic process, phosphorylation; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate and galactokinase (InterPro:IPR006206), GHMP kinase (InterPro:IPR006204), L-fucokinase (InterPro:IPR012887), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 1240 Blast hits to 1200 proteins in 265 species: Archae - 44; Bacteria - 390; Metazoa - 134; Fungi - 1; Plants - 33; Viruses - 3; Other Eukaryotes - 635 (source: NCBI BLink).  protein_id AT1G01220.1p  transcript_id AT1G01220.1  protein_id AT1G01220.1p  transcript_id AT1G01220.1  
At1g01225	chr1:000096064	0.0	W/96064-96157,96554-97242	AT1G01225.1 CDS  go_component cellular_component|GO:0005575||ND  product NC domain-containing protein-related  note NC domain-containing protein-related; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00905.1); Has 90 Blast hits to 89 proteins in 22 species: Archae - 0; Bacteria - 19; Metazoa - 3; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G01225.1p  transcript_id AT1G01225.1  protein_id AT1G01225.1p  transcript_id AT1G01225.1  
At1g01230	chr1:000097620	0.0	W/97620-97805,98457-98605,98908-99046	AT1G01230.1 CDS  gene_syn F6F3.4, F6F3_4  go_component integral to membrane|GO:0016021||IEA  go_component endoplasmic reticulum|GO:0005783||ISS  go_process protein folding|GO:0006457||ISS  go_function molecular_function|GO:0003674||ND  product ORMDL family protein  note ORMDL family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding; LOCATED IN: integral to membrane, endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ORMDL (InterPro:IPR007203); BEST Arabidopsis thaliana protein match is: ORMDL family protein (TAIR:AT5G42000.1); Has 398 Blast hits to 398 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 101; Plants - 52; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G01230.1p  transcript_id AT1G01230.1  protein_id AT1G01230.1p  transcript_id AT1G01230.1  
At1g01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.1 CDS  gene_syn F633.5, F633_5, F6F3.27  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1); Has 70 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G01240.1p  transcript_id AT1G01240.1  protein_id AT1G01240.1p  transcript_id AT1G01240.1  
At1g01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.2 CDS  gene_syn F633.5, F633_5, F6F3.27  product unknown protein  note unknown protein; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1); Has 70 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G01240.2p  transcript_id AT1G01240.2  protein_id AT1G01240.2p  transcript_id AT1G01240.2  
At1g01240	chr1:000100683	0.0	W/100683-101678	AT1G01240.3 CDS  gene_syn F633.5, F633_5, F6F3.27  product unknown protein  note unknown protein; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46550.1); Has 70 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G01240.3p  transcript_id AT1G01240.3  protein_id AT1G01240.3p  transcript_id AT1G01240.3  
At1g01250	chr1:000104731	0.0	C/104731-105309	AT1G01250.1 CDS  gene_syn F6F3.6, F6F3_6  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: tny (TINY); DNA binding / transcription factor (TAIR:AT5G25810.1); Has 3550 Blast hits to 3523 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3546; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G01250.1p  transcript_id AT1G01250.1  protein_id AT1G01250.1p  transcript_id AT1G01250.1  
At1g01260	chr1:000109595	0.0	W/109595-111367	AT1G01260.1 CDS  gene_syn F6F3.7, F6F3_7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR); DNA binding / transcription factor (TAIR:AT2G46510.1); Has 2098 Blast hits to 1892 proteins in 178 species: Archae - 0; Bacteria - 2; Metazoa - 163; Fungi - 52; Plants - 1843; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G01260.1p  transcript_id AT1G01260.1  protein_id AT1G01260.1p  transcript_id AT1G01260.1  
At1g01260	chr1:000109595	0.0	W/109595-111367	AT1G01260.2 CDS  gene_syn F6F3.7, F6F3_7  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR); DNA binding / transcription factor (TAIR:AT2G46510.1); Has 2098 Blast hits to 1892 proteins in 178 species: Archae - 0; Bacteria - 2; Metazoa - 163; Fungi - 52; Plants - 1843; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G01260.2p  transcript_id AT1G01260.2  protein_id AT1G01260.2p  transcript_id AT1G01260.2  
At1g01270	chr1:000111890	0.0	C/111890-111961	AT1G01270.1 tRNA  gene_syn 51947.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT1G01270.1  
At1g01280	chr1:000112290	0.0	W/112290-113195,113279-113905	AT1G01280.1 CDS  gene_syn CYP703, CYP703A2, CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2, F6F3.8, F6F3_8  gene CYP703A2  function member of CYP703A CYP703A2 is expressed specifically in anthers of land plants, catalyzing the in-chain hydroxylation at the C-7 position of medium-chain saturated fatty acids (lauric acid in-chain hydroxylase) which is involved in pollen development (sporopollenin synthesis).  go_component endomembrane system|GO:0012505||IEA  go_process pollen wall assembly|GO:0010208|17496121|IMP  go_process pollen exine formation|GO:0010584||IMP  go_process medium-chain fatty acid metabolic process|GO:0051791|17496121|IDA  go_process medium-chain fatty acid biosynthetic process|GO:0051792|17496121|IDA  go_process sporopollenin biosynthetic process|GO:0080110|17496121|IMP  go_process sporopollenin biosynthetic process|GO:0080110|17496121|TAS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|17496121|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding  note CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2 (CYP703A2); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, oxygen binding; INVOLVED IN: medium-chain fatty acid metabolic process, pollen wall assembly, medium-chain fatty acid biosynthetic process, sporopollenin biosynthetic process, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: TT7 (TRANSPARENT TESTA 7); flavonoid 3 -monooxygenase/ oxygen binding (TAIR:AT5G07990.1); Has 21024 Blast hits to 20849 proteins in 1166 species: Archae - 19; Bacteria - 1465; Metazoa - 9664; Fungi - 3771; Plants - 5489; Viruses - 3; Other Eukaryotes - 613 (source: NCBI BLink).  protein_id AT1G01280.1p  transcript_id AT1G01280.1  protein_id AT1G01280.1p  transcript_id AT1G01280.1  
At1g01290	chr1:000114299	0.0	W/114299-114433,114619-115296	AT1G01290.1 CDS  gene_syn CNX3, COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3, F6F3.9, F6F3_9  gene CNX3  function COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria  go_component mitochondrion|GO:0005739|7890743|ISS  go_component chloroplast|GO:0009507|7890743|ISS  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777|7890743|IGI  go_function catalytic activity|GO:0003824|7890743|IGI  product CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3); catalytic  note COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3 (CNX3); FUNCTIONS IN: catalytic activity; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdopterin cofactor biosynthesis MoaC region (InterPro:IPR002820); Has 3379 Blast hits to 3377 proteins in 1079 species: Archae - 134; Bacteria - 1966; Metazoa - 88; Fungi - 44; Plants - 19; Viruses - 0; Other Eukaryotes - 1128 (source: NCBI BLink).  protein_id AT1G01290.1p  transcript_id AT1G01290.1  protein_id AT1G01290.1p  transcript_id AT1G01290.1  
At1g01290	chr1:000114299	0.0	W/114299-114433,114619-115296	AT1G01290.2 CDS  gene_syn CNX3, COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3, F6F3.9, F6F3_9  gene CNX3  function COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria  go_component mitochondrion|GO:0005739|7890743|ISS  go_component chloroplast|GO:0009507|7890743|ISS  go_process Mo-molybdopterin cofactor biosynthetic process|GO:0006777|7890743|IGI  go_function catalytic activity|GO:0003824|7890743|IGI  product CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3); catalytic  note COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3 (CNX3); FUNCTIONS IN: catalytic activity; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdopterin cofactor biosynthesis MoaC region (InterPro:IPR002820).  protein_id AT1G01290.2p  transcript_id AT1G01290.2  protein_id AT1G01290.2p  transcript_id AT1G01290.2  
At1g01300	chr1:000117065	0.0	W/117065-118522	AT1G01300.1 CDS  gene_syn F6F3.10, F6F3_10  go_component membrane|GO:0016020|17432890|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G61820.1); Has 2689 Blast hits to 2664 proteins in 261 species: Archae - 0; Bacteria - 0; Metazoa - 929; Fungi - 434; Plants - 1177; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G01300.1p  transcript_id AT1G01300.1  protein_id AT1G01300.1p  transcript_id AT1G01300.1  
At1g01305	chr1:000119429	0.0	W/119429-119854	AT1G01305.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01305.1p  transcript_id AT1G01305.1  protein_id AT1G01305.1p  transcript_id AT1G01305.1  
At1g01310	chr1:000120221	0.0	W/120221-120946	AT1G01310.1 CDS  gene_syn F6F3.11, F6F3_11  go_component extracellular region|GO:0005576||IEA  go_component extracellular region|GO:0005576||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product allergen V5/Tpx-1-related family protein  note allergen V5/Tpx-1-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related protein, putative (TAIR:AT4G25780.1); Has 2222 Blast hits to 2131 proteins in 282 species: Archae - 0; Bacteria - 50; Metazoa - 1302; Fungi - 220; Plants - 597; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G01310.1p  transcript_id AT1G01310.1  protein_id AT1G01310.1p  transcript_id AT1G01310.1  
At1g01320	chr1:000121582	0.0	C/121582-123501,123579-123669,123785-123897,123992-124123,124211-124394,124499-124632,124714-124818,124921-125046,125134-125226,125329-125655,125742-125843,125936-125998,126076-126589,126686-126840,126935-127453,127532-127573,127651-127782,127868-127935,128028-128312,128479-128551,128968-129060,129853-129914,130039-130099	AT1G01320.1 CDS  gene_syn F6F3.12, F6F3_12  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G28080.1); Has 10077 Blast hits to 4062 proteins in 343 species: Archae - 100; Bacteria - 2124; Metazoa - 5307; Fungi - 1095; Plants - 343; Viruses - 76; Other Eukaryotes - 1032 (source: NCBI BLink).  protein_id AT1G01320.1p  transcript_id AT1G01320.1  protein_id AT1G01320.1p  transcript_id AT1G01320.1  
At1g01340	chr1:000132414	0.0	C/132414-132744,132824-133218,133303-133539,133641-133752,133911-134206,134289-134501,134582-135118	AT1G01340.1 CDS  gene_syn ACBK1, ATCNGC10, CNGC10, CYCLIC NUCLEOTIDE GATED CHANNEL 10, F6F3.13, F6F3_13  gene ATCNGC10  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 10 (ATCNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC13; calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT4G01010.1); Has 2588 Blast hits to 2484 proteins in 207 species: Archae - 0; Bacteria - 25; Metazoa - 1284; Fungi - 23; Plants - 663; Viruses - 0; Other Eukaryotes - 593 (source: NCBI BLink).  protein_id AT1G01340.1p  transcript_id AT1G01340.1  protein_id AT1G01340.1p  transcript_id AT1G01340.1  
At1g01350	chr1:000136732	0.0	W/136732-136816,136935-137758,137848-137970	AT1G01350.1 CDS  gene_syn F6F3.14, F6F3.15, F6F3_14, F6F3_15  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding / protein binding / zinc ion binding  note nucleic acid binding / protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 684 Blast hits to 680 proteins in 163 species: Archae - 0; Bacteria - 2; Metazoa - 306; Fungi - 148; Plants - 91; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G01350.1p  transcript_id AT1G01350.1  protein_id AT1G01350.1p  transcript_id AT1G01350.1  
At1g01355	chr1:000138513	0.0	W/138513-138541,138597-138778,138863-139114,139203-139345,139488-139568	AT1G01355.1 CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35640.1); Has 79 Blast hits to 77 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01355.1p  transcript_id AT1G01355.1  protein_id AT1G01355.1p  transcript_id AT1G01355.1  
At1g01360	chr1:000142138	0.0	W/142138-142281,142424-142639,142711-142914	AT1G01360.1 CDS  gene_syn F6F3.16, F6F3_16  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01026.1); Has 183 Blast hits to 183 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01360.1p  transcript_id AT1G01360.1  protein_id AT1G01360.1p  transcript_id AT1G01360.1  
At1g01370	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.1 CDS  gene_syn CENH3, CENTROMERIC HISTONE H3, F6F3.17, F6F3_17, HTR12  gene HTR12  function Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.  go_function DNA binding|GO:0003677||IEA  go_component chromosome, centromeric region|GO:0000775|12034896|IDA  go_component nucleus|GO:0005634|17555967|IEP  go_process double fertilization forming a zygote and endosperm|GO:0009567|17555967|IEP  go_function DNA binding|GO:0003677||ISS  product HTR12; DNA binding  note HTR12; FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10019 Blast hits to 10016 proteins in 5222 species: Archae - 0; Bacteria - 0; Metazoa - 7266; Fungi - 1295; Plants - 989; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink).  protein_id AT1G01370.1p  transcript_id AT1G01370.1  protein_id AT1G01370.1p  transcript_id AT1G01370.1  
At1g01370	chr1:000143773	0.0	W/143773-143824,143934-143977,144064-144109,144193-144227,144315-144351,144447-144559,144927-145004,145132-145207,145345-145400	AT1G01370.2 CDS  gene_syn CENH3, CENTROMERIC HISTONE H3, F6F3.17, F6F3_17, HTR12  gene HTR12  function Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.  go_function DNA binding|GO:0003677||IEA  go_component chromosome, centromeric region|GO:0000775|12034896|IDA  go_component nucleus|GO:0005634|17555967|IEP  go_process double fertilization forming a zygote and endosperm|GO:0009567|17555967|IEP  go_function DNA binding|GO:0003677||ISS  product HTR12; DNA binding  note HTR12; FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10019 Blast hits to 10016 proteins in 5222 species: Archae - 0; Bacteria - 0; Metazoa - 7266; Fungi - 1295; Plants - 989; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink).  protein_id AT1G01370.2p  transcript_id AT1G01370.2  protein_id AT1G01370.2p  transcript_id AT1G01370.2  
At1g01380	chr1:000147267	0.0	W/147267-147333,147452-147539,147644-147740	AT1G01380.1 CDS  gene_syn ENHANCER OF TRY AND CPC 1, ETC1, F6F3.18, F6F3_18  gene ETC1  function ETC1 is involved in trichome and root hair patterning in Arabidopsis.  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ETC1 (ENHANCER OF TRY AND CPC 1); DNA binding / transcription factor  note ENHANCER OF TRY AND CPC 1 (ETC1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: shoot apex, hypocotyl, root; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: CPL3 (CAPRICE-LIKE MYB3); DNA binding / transcription factor (TAIR:AT4G01060.3); Has 1345 Blast hits to 1345 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1333; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G01380.1p  transcript_id AT1G01380.1  protein_id AT1G01380.1p  transcript_id AT1G01380.1  
At1g01390	chr1:000148319	0.0	C/148319-149761	AT1G01390.1 CDS  gene_syn F6F3.19, F6F3_19  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G01420.1); Has 5002 Blast hits to 4975 proteins in 294 species: Archae - 0; Bacteria - 113; Metazoa - 2124; Fungi - 19; Plants - 2672; Viruses - 46; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G01390.1p  transcript_id AT1G01390.1  protein_id AT1G01390.1p  transcript_id AT1G01390.1  
At1g01400	chr1:000151158	0.0	C/151158-151298,151393-151731,151932-152002,152086-152149	AT1G01400.1 CDS  gene_syn F6F3.20, F6F3_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G01400.1p  transcript_id AT1G01400.1  protein_id AT1G01400.1p  transcript_id AT1G01400.1  
At1g01410	chr1:000153113	0.0	W/153113-154198	AT1G01410.1 CDS  gene_syn APUM22, Arabidopsis Pumilio 22, F6F3.21, F6F3_21  gene APUM22  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product APUM22 (Arabidopsis Pumilio 22); RNA binding / binding  note Arabidopsis Pumilio 22 (APUM22); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G64490.1); Has 197 Blast hits to 175 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 40; Plants - 107; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G01410.1p  transcript_id AT1G01410.1  protein_id AT1G01410.1p  transcript_id AT1G01410.1  
At1g01420	chr1:000154566	0.0	C/154566-156011	AT1G01420.1 CDS  gene_syn F6F3.22, F6F3_22, UDP-GLUCOSYL TRANSFERASE 72B3, UGT72B3  gene UGT72B3  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 72B3 (UGT72B3); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G01390.1); Has 4951 Blast hits to 4925 proteins in 327 species: Archae - 0; Bacteria - 162; Metazoa - 1997; Fungi - 14; Plants - 2680; Viruses - 67; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G01420.1p  transcript_id AT1G01420.1  protein_id AT1G01420.1p  transcript_id AT1G01420.1  
At1g01430	chr1:000156953	0.0	C/156953-157756,157829-158112,158254-158536	AT1G01430.1 CDS  gene_syn F6F3.23, F6F3_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01080.1); Has 706 Blast hits to 695 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 702; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01430.1p  transcript_id AT1G01430.1  protein_id AT1G01430.1p  transcript_id AT1G01430.1  
At1g01440	chr1:000159935	0.0	C/159935-159992,160079-160302,160418-160478,160568-162219	AT1G01440.1 CDS  gene_syn F6F3.24, F6F3_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product extra-large G-protein-related  note extra-large G-protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: extra-large G-protein-related (TAIR:AT4G01090.1); Has 547 Blast hits to 507 proteins in 84 species: Archae - 0; Bacteria - 12; Metazoa - 214; Fungi - 50; Plants - 211; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G01440.1p  transcript_id AT1G01440.1  protein_id AT1G01440.1p  transcript_id AT1G01440.1  
At1g01448	chr1:000163419	0.0	W/163419-164576	AT1G01448.3 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G01450  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G01448.3  
At1g01448	chr1:000163431	0.0	W/163431-166239	AT1G01448.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G01450  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G01448.1  
At1g01448	chr1:000163432	0.0	W/163432-164687	AT1G01448.2 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G01450  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G01448.2  
At1g01450	chr1:000164105	0.0	C/164105-165517	AT1G01450.1 CDS  gene_syn F22L4.1, F22L4_1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase-related  note protein kinase-related; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF1221 (InterPro:IPR010632), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G64300.2); Has 54362 Blast hits to 53835 proteins in 1482 species: Archae - 31; Bacteria - 4005; Metazoa - 25314; Fungi - 3795; Plants - 11255; Viruses - 185; Other Eukaryotes - 9777 (source: NCBI BLink).  protein_id AT1G01450.1p  transcript_id AT1G01450.1  protein_id AT1G01450.1p  transcript_id AT1G01450.1  
At1g01453	chr1:000166853	0.0	C/166853-166871,167014-167798	AT1G01453.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 125 Blast hits to 124 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01453.1p  transcript_id AT1G01453.1  protein_id AT1G01453.1p  transcript_id AT1G01453.1  
At1g01453	chr1:000166929	0.0	C/166929-167798	AT1G01453.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 125 Blast hits to 124 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01453.2p  transcript_id AT1G01453.2  protein_id AT1G01453.2p  transcript_id AT1G01453.2  
At1g01460	chr1:000169115	0.0	W/169115-169257,169347-169509,169600-169710,169806-169993,170071-170162,170266-170313,170412-170507,170622-170760,170851-171154	AT1G01460.1 CDS  gene_syn ATPIPK11, F22L4.2, F22L4_2, PIPK11  gene PIPK11  function Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A.  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_component cellular_component|GO:0005575||ND  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product PIPK11; 1-phosphatidylinositol-4-phosphate 5-kinase/ phosphatidylinositol phosphate kinase  note PIPK11; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: ATPIPK10 (Arabidopsis phosphatidylinositol phosphate kinase 10); 1-phosphatidylinositol-4-phosphate 5-kinase (TAIR:AT4G01190.1); Has 1603 Blast hits to 1205 proteins in 160 species: Archae - 0; Bacteria - 2; Metazoa - 875; Fungi - 219; Plants - 216; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).  protein_id AT1G01460.1p  transcript_id AT1G01460.1  protein_id AT1G01460.1p  transcript_id AT1G01460.1  
At1g01470	chr1:000172295	0.0	C/172295-172544,172621-172826	AT1G01470.1 CDS  gene_syn F22L4.3, F22L4_3, LATE EMBRYOGENESIS ABUNDANT 14, LEA14, LIGHT STRESS-REGULATED 3, LSR3  gene LEA14  function Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.  go_component cellular_component|GO:0005575||ND  go_process response to desiccation|GO:0009269||ISS  go_process response to wounding|GO:0009611|12068110|IEP  go_process response to high light intensity|GO:0009644|11683875|IEP  go_process embryonic development ending in seed dormancy|GO:0009793||ISS  go_function molecular_function|GO:0003674||ND  product LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)  note LATE EMBRYOGENESIS ABUNDANT 14 (LEA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, response to high light intensity, response to desiccation, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Water Stress and Hypersensitive response (InterPro:IPR013990), Late embryogenesis abundant protein 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein, putative / LEA protein, putative (TAIR:AT2G46140.1); Has 279 Blast hits to 279 proteins in 84 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 268; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G01470.1p  transcript_id AT1G01470.1  protein_id AT1G01470.1p  transcript_id AT1G01470.1  
At1g01471	chr1:000173251	0.0	W/173251-173466	AT1G01471.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G01471.1p  transcript_id AT1G01471.1  protein_id AT1G01471.1p  transcript_id AT1G01471.1  
At1g01480	chr1:000175862	0.0	W/175862-176032,176207-176338,176592-176752,177025-178051	AT1G01480.1 CDS  gene_syn 1-AMINO-CYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2, 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE, ACS2, AT-ACC2, EC 4.4.1.14, F22L4.4, F22L4_4, S-ADENOSYL-L-METHIONINE METHYLTHIOADENOSINE-LYASE  gene ACS2  function a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693|1357670|TAS  go_process ethylene biosynthetic process|GO:0009693|1438312|TAS  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|8566772|IDA  product ACS2; 1-aminocyclopropane-1-carboxylate synthase  note ACS2; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 18828 Blast hits to 18825 proteins in 1673 species: Archae - 546; Bacteria - 10697; Metazoa - 565; Fungi - 502; Plants - 940; Viruses - 0; Other Eukaryotes - 5578 (source: NCBI BLink).  protein_id AT1G01480.1p  transcript_id AT1G01480.1  protein_id AT1G01480.1p  transcript_id AT1G01480.1  
At1g01480	chr1:000176607	0.0	W/176607-176752,177025-178051	AT1G01480.2 CDS  gene_syn 1-AMINO-CYCLOPROPANE-1-CARBOXYLATE SYNTHASE 2, 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE, ACS2, AT-ACC2, EC 4.4.1.14, F22L4.4, F22L4_4, S-ADENOSYL-L-METHIONINE METHYLTHIOADENOSINE-LYASE  gene ACS2  function a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.  go_component cellular_component|GO:0005575||ND  go_process ethylene biosynthetic process|GO:0009693|1357670|TAS  go_process ethylene biosynthetic process|GO:0009693|1438312|TAS  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|12968022|IDA  go_function 1-aminocyclopropane-1-carboxylate synthase activity|GO:0016847|8566772|IDA  product ACS2; 1-aminocyclopropane-1-carboxylate synthase  note ACS2; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity; INVOLVED IN: ethylene biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 17664 Blast hits to 17662 proteins in 1665 species: Archae - 503; Bacteria - 9956; Metazoa - 547; Fungi - 495; Plants - 904; Viruses - 0; Other Eukaryotes - 5259 (source: NCBI BLink).  protein_id AT1G01480.2p  transcript_id AT1G01480.2  protein_id AT1G01480.2p  transcript_id AT1G01480.2  
At1g01490	chr1:000180401	0.0	C/180401-180852,181347-181422,182061-182066	AT1G01490.1 CDS  gene_syn F22L4.5, F22L4_5  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G23760.1); Has 7628 Blast hits to 3670 proteins in 294 species: Archae - 47; Bacteria - 686; Metazoa - 2844; Fungi - 342; Plants - 780; Viruses - 96; Other Eukaryotes - 2833 (source: NCBI BLink).  protein_id AT1G01490.1p  transcript_id AT1G01490.1  protein_id AT1G01490.1p  transcript_id AT1G01490.1  
At1g01490	chr1:000180401	0.0	C/180401-180852,181347-181422,182061-182066	AT1G01490.2 CDS  gene_syn F22L4.5, F22L4_5  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT5G23760.1); Has 7628 Blast hits to 3670 proteins in 294 species: Archae - 47; Bacteria - 686; Metazoa - 2844; Fungi - 342; Plants - 780; Viruses - 96; Other Eukaryotes - 2833 (source: NCBI BLink).  protein_id AT1G01490.2p  transcript_id AT1G01490.2  protein_id AT1G01490.2p  transcript_id AT1G01490.2  
At1g01500	chr1:000185260	0.0	W/185260-186009,186340-186573	AT1G01500.1 CDS  gene_syn F22L4.17, F22L4_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19400.2); Has 70 Blast hits to 69 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01500.1p  transcript_id AT1G01500.1  protein_id AT1G01500.1p  transcript_id AT1G01500.1  
At1g01510	chr1:000187235	0.0	W/187235-187822,188011-188176,188284-188414,188529-189320,189417-189464,189562-189675,189765-189836	AT1G01510.1 CDS  gene_syn AN, ANGUSTIFOLIA, F22L4.6, F22L4_6  gene AN  function Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction.  go_component cellular_component|GO:0005575||ND  go_process microtubule cytoskeleton organization|GO:0000226|11889033|IMP  go_process leaf morphogenesis|GO:0009965|8625845|IMP  go_process monopolar cell growth|GO:0042814|8625845|IMP  go_function protein binding|GO:0005515|11889033|IPI  product AN (ANGUSTIFOLIA); protein binding  note ANGUSTIFOLIA (AN); FUNCTIONS IN: protein binding; INVOLVED IN: microtubule cytoskeleton organization, monopolar cell growth, leaf morphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: HPR; glycerate dehydrogenase/ poly(U) binding (TAIR:AT1G68010.1); Has 13434 Blast hits to 13333 proteins in 1454 species: Archae - 234; Bacteria - 7377; Metazoa - 566; Fungi - 618; Plants - 303; Viruses - 5; Other Eukaryotes - 4331 (source: NCBI BLink).  protein_id AT1G01510.1p  transcript_id AT1G01510.1  protein_id AT1G01510.1p  transcript_id AT1G01510.1  
At1g01520	chr1:000190596	0.0	W/190596-190828,190941-190998,191138-191258,191341-191475,191579-191692,191780-191889,191967-192026,192107-192139	AT1G01520.1 CDS  gene_syn F22L4.18, F22L4_18  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to salt stress, regulation of transcription, DNA-dependent; EXPRESSED IN: stem, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT4G01280.1); Has 771 Blast hits to 767 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0; Plants - 645; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT1G01520.1p  transcript_id AT1G01520.1  protein_id AT1G01520.1p  transcript_id AT1G01520.1  
At1g01530	chr1:000192640	0.0	C/192640-193071,193351-193662	AT1G01530.1 CDS  gene_syn AGAMOUS-LIKE 28, AGL28, F22L4.7, F22L4_7  gene AGL28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL28 (AGAMOUS-LIKE 28); DNA binding / transcription factor  note AGAMOUS-LIKE 28 (AGL28); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL23 (AGAMOUS-LIKE 23); DNA binding / transcription factor (TAIR:AT1G65360.1); Has 4255 Blast hits to 4254 proteins in 558 species: Archae - 0; Bacteria - 0; Metazoa - 553; Fungi - 206; Plants - 3438; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G01530.1p  transcript_id AT1G01530.1  protein_id AT1G01530.1p  transcript_id AT1G01530.1  
At1g01540	chr1:000195980	0.0	W/195980-196542,197115-197219,197300-197422,197501-197671,197775-197904,197974-198183,198267-198383	AT1G01540.2 CDS  gene_syn F22L4.8, F22L4_8  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G01330.1); Has 85830 Blast hits to 84796 proteins in 3163 species: Archae - 57; Bacteria - 8048; Metazoa - 37643; Fungi - 6516; Plants - 18556; Viruses - 420; Other Eukaryotes - 14590 (source: NCBI BLink).  protein_id AT1G01540.2p  transcript_id AT1G01540.2  protein_id AT1G01540.2p  transcript_id AT1G01540.2  
At1g01540	chr1:000195980	0.0	W/195980-196542,197115-197219,197300-197422,197501-197671,197775-197973	AT1G01540.1 CDS  gene_syn F22L4.8, F22L4_8  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT4G01330.1); Has 85516 Blast hits to 84503 proteins in 3152 species: Archae - 53; Bacteria - 8018; Metazoa - 37587; Fungi - 6480; Plants - 18471; Viruses - 410; Other Eukaryotes - 14497 (source: NCBI BLink).  protein_id AT1G01540.1p  transcript_id AT1G01540.1  protein_id AT1G01540.1p  transcript_id AT1G01540.1  
At1g01550	chr1:000200526	0.0	W/200526-201575	AT1G01550.1 CDS  gene_syn BPS1, BYPASS 1, F22L4.9, F22L4_9  gene BPS1  function BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signal  go_component plasma membrane|GO:0005886|17317660|IDA  go_function molecular_function|GO:0003674||ND  product BPS1 (BYPASS 1)  note BYPASS 1 (BPS1); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 97 Blast hits to 97 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G01550.1p  transcript_id AT1G01550.1  protein_id AT1G01550.1p  transcript_id AT1G01550.1  
At1g01550	chr1:000200526	0.0	W/200526-201575	AT1G01550.2 CDS  gene_syn BPS1, BYPASS 1, F22L4.9, F22L4_9  gene BPS1  function BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signal  go_component plasma membrane|GO:0005886|17317660|IDA  go_function molecular_function|GO:0003674||ND  product BPS1 (BYPASS 1)  note BYPASS 1 (BPS1); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 97 Blast hits to 97 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G01550.2p  transcript_id AT1G01550.2  protein_id AT1G01550.2p  transcript_id AT1G01550.2  
At1g01560	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203599,203760-203943,204029-204189	AT1G01560.2 CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 11, ATMPK11, F22L4.10, F22L4_10  gene ATMPK11  function member of MAP Kinase  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|12119167|IC  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK11; MAP kinase/ kinase  note ATMPK11; FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), JNK MAP kinase (InterPro:IPR008351), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (TAIR:AT4G01370.1); Has 89151 Blast hits to 88076 proteins in 3288 species: Archae - 43; Bacteria - 6810; Metazoa - 39877; Fungi - 8066; Plants - 17071; Viruses - 440; Other Eukaryotes - 16844 (source: NCBI BLink).  protein_id AT1G01560.2p  transcript_id AT1G01560.2  protein_id AT1G01560.2p  transcript_id AT1G01560.2  
At1g01560	chr1:000202345	0.0	W/202345-202508,202782-202911,202991-203128,203267-203662	AT1G01560.1 CDS  gene_syn ARABIDOPSIS THALIANA MAP KINASE 11, ATMPK11, F22L4.10, F22L4_10  gene ATMPK11  function member of MAP Kinase  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|12119167|IC  go_process response to abscisic acid stimulus|GO:0009737|16258012|IEP  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK11; MAP kinase/ kinase  note ATMPK11; FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (TAIR:AT4G01370.1); Has 88164 Blast hits to 87226 proteins in 3269 species: Archae - 39; Bacteria - 6753; Metazoa - 39481; Fungi - 7939; Plants - 16987; Viruses - 423; Other Eukaryotes - 16542 (source: NCBI BLink).  protein_id AT1G01560.1p  transcript_id AT1G01560.1  protein_id AT1G01560.1p  transcript_id AT1G01560.1  
At1g01570	chr1:000205176	0.0	W/205176-205949,206692-207243,207325-207435	AT1G01570.1 CDS  gene_syn F22L4.11, F22L4_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G00300.1); Has 358 Blast hits to 354 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 125; Plants - 136; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G01570.1p  transcript_id AT1G01570.1  protein_id AT1G01570.1p  transcript_id AT1G01570.1  
At1g01580	chr1:000209395	0.0	W/209395-209608,209764-209866,209950-210144,210385-210619,211052-211379,211474-211717,211855-212573,212671-212810	AT1G01580.1 CDS  gene_syn ATFRO2, F22L4.12, F22L4_12, FERRIC CHELATE REDUCTASE DEFECTIVE 1, FERRIC REDUCTION OXIDASE 2, FRD1, FRO2  gene FRO2  function Encodes the low-iron-inducible ferric chelate reductase responsible for reduction of iron at the root surface. It is likely to be the major Fe(III) chelate reductase in Arabidopsis iron metabolism. Coordinately regulated with IRT1, the major transporter responsible for high-affinity iron uptake from the soil, at both transcriptional and posttranscriptional levels. Steady state mRNA levels are regulated by several metals. Its transcription is regulated by FIT1.  go_component plasma membrane|GO:0005886|16813577|IDA  go_component membrane|GO:0016020||ISS  go_process response to bacterium|GO:0009617|19121106|IEP  go_process response to cytokinin stimulus|GO:0009735|18397377|IEP  go_process cellular response to iron ion starvation|GO:0010106|16813577|IEP  go_process iron chelate transport|GO:0015688|10067892|IMP  go_process iron ion homeostasis|GO:0055072|18697928|IMP  go_function ferric-chelate reductase activity|GO:0000293|10067892|IMP  go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA  go_function ferric-chelate reductase activity|GO:0000293||ISS  product FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase  note FERRIC REDUCTION OXIDASE 2 (FRO2); FUNCTIONS IN: ferric-chelate reductase activity; INVOLVED IN: cellular response to iron ion starvation, response to bacterium, iron ion homeostasis, response to cytokinin stimulus, iron chelate transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: FRO1 (FERRIC REDUCTION OXIDASE 1); ferric-chelate reductase (TAIR:AT1G01590.1); Has 1751 Blast hits to 1751 proteins in 261 species: Archae - 3; Bacteria - 183; Metazoa - 466; Fungi - 743; Plants - 251; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G01580.1p  transcript_id AT1G01580.1  protein_id AT1G01580.1p  transcript_id AT1G01580.1  
At1g01590	chr1:000214229	0.0	W/214229-214406,214480-214582,214697-214897,215317-215554,215633-215960,216044-216293,216414-217090,217165-217304	AT1G01590.1 CDS  gene_syn ATFRO1, F22L4.13, F22L4_13, FERRIC REDUCTION OXIDASE 1, FRO1  gene FRO1  function Encodes a ferric-chelate reductase that is expressed at extremely low levels in Fe deficiency-induced seedlings.  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_function ferric-chelate reductase activity|GO:0000293|10067892|IMP  go_function ferric-chelate reductase activity|GO:0000293||ISS  product FRO1 (FERRIC REDUCTION OXIDASE 1); ferric-chelate reductase  note FERRIC REDUCTION OXIDASE 1 (FRO1); FUNCTIONS IN: ferric-chelate reductase activity; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: FRO3; ferric-chelate reductase (TAIR:AT1G23020.1); Has 1689 Blast hits to 1686 proteins in 247 species: Archae - 0; Bacteria - 149; Metazoa - 471; Fungi - 717; Plants - 251; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G01590.1p  transcript_id AT1G01590.1  protein_id AT1G01590.1p  transcript_id AT1G01590.1  
At1g01600	chr1:000219200	0.0	W/219200-219621,219752-220994	AT1G01600.1 CDS  gene_syn CYP86A4, CYTOCHROME P450, FAMILY 86, SUBFAMILY A, POLYPEPTIDE 4, F22L4.14, F22L4_14  gene CYP86A4  function Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers.  go_process fatty acid metabolic process|GO:0006631|15709153|IDA  go_function fatty acid (omega-1)-hydroxylase activity|GO:0008393|15709153|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP86A4; fatty acid (omega-1)-hydroxylase/ oxygen binding  note CYP86A4; FUNCTIONS IN: fatty acid (omega-1)-hydroxylase activity, oxygen binding; INVOLVED IN: fatty acid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86A2 (CYTOCHROME P450 86 A2); fatty acid (omega-1)-hydroxylase/ oxygen binding (TAIR:AT4G00360.1); Has 20078 Blast hits to 20026 proteins in 1081 species: Archae - 19; Bacteria - 1457; Metazoa - 9293; Fungi - 3922; Plants - 4687; Viruses - 3; Other Eukaryotes - 697 (source: NCBI BLink).  protein_id AT1G01600.1p  transcript_id AT1G01600.1  protein_id AT1G01600.1p  transcript_id AT1G01600.1  
At1g01610	chr1:000221950	0.0	C/221950-222359,222622-223096,223551-223866,223945-224255	AT1G01610.1 CDS  gene_syn ATGPAT4, F22L4.15, F22L4_15, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4, GPAT4  gene GPAT4  function Encodes a protein with glycerol-3-phosphate acyltransferase activity. Involved in cutin assembly. Is functional redundant of GPAT8.  go_process metabolic process|GO:0008152||ISS  go_process cutin biosynthetic process|GO:0010143|17991776|IMP  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|12897259|IGI  go_function acyltransferase activity|GO:0008415||ISS  product GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase  note GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4 (GPAT4); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: cutin biosynthetic process, metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT8 (glycerol-3-phosphate acyltransferase 8); acyltransferase/ glycerol-3-phosphate O-acyltransferase (TAIR:AT4G00400.1); Has 215 Blast hits to 209 proteins in 23 species: Archae - 0; Bacteria - 15; Metazoa - 9; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G01610.1p  transcript_id AT1G01610.1  protein_id AT1G01610.1p  transcript_id AT1G01610.1  
At1g01620	chr1:000225986	0.0	C/225986-226081,226171-226311,226396-226691,226849-226960	AT1G01620.2 CDS  gene_syn F22L4.16, F22L4_16, PIP1;3, PIP1C, PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, PLASMA MEMBRANE INTRINSIC PROTEIN 1C, TMP-B  gene PIP1C  function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component plasma membrane|GO:0005886|7920711|TAS  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 1C (PIP1C); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;4); water channel (TAIR:AT4G00430.1); Has 6531 Blast hits to 6525 proteins in 1238 species: Archae - 57; Bacteria - 2581; Metazoa - 1253; Fungi - 283; Plants - 1488; Viruses - 2; Other Eukaryotes - 867 (source: NCBI BLink).  protein_id AT1G01620.2p  transcript_id AT1G01620.2  protein_id AT1G01620.2p  transcript_id AT1G01620.2  
At1g01620	chr1:000225986	0.0	C/225986-226081,226171-226311,226396-226691,226849-227176	AT1G01620.1 CDS  gene_syn F22L4.16, F22L4_16, PIP1;3, PIP1C, PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, PLASMA MEMBRANE INTRINSIC PROTEIN 1C, TMP-B  gene PIP1C  function a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|7920711|IDA  go_component plasma membrane|GO:0005886|7920711|TAS  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_process water transport|GO:0006833|7920711|IDA  go_process response to water deprivation|GO:0009414|16235111|IEP  go_process response to salt stress|GO:0009651|16183846|IEP  go_function water channel activity|GO:0015250|7920711|IDA  go_function water channel activity|GO:0015250||ISS  product PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel  note PLASMA MEMBRANE INTRINSIC PROTEIN 1C (PIP1C); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to salt stress, response to water deprivation, water transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: PIP1;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;4); water channel (TAIR:AT4G00430.1); Has 6745 Blast hits to 6732 proteins in 1253 species: Archae - 65; Bacteria - 2619; Metazoa - 1273; Fungi - 287; Plants - 1492; Viruses - 2; Other Eukaryotes - 1007 (source: NCBI BLink).  protein_id AT1G01620.1p  transcript_id AT1G01620.1  protein_id AT1G01620.1p  transcript_id AT1G01620.1  
At1g01630	chr1:000229206	0.0	W/229206-229343,229429-229724,229829-229934,230349-230459,230559-230675	AT1G01630.1 CDS  gene_syn T1N6.1, T1N6_1  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  note SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT1G14820.3); Has 2114 Blast hits to 2114 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 944; Fungi - 440; Plants - 452; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT1G01630.1p  transcript_id AT1G01630.1  protein_id AT1G01630.1p  transcript_id AT1G01630.1  
At1g01640	chr1:000231164	0.0	C/231164-231655,231784-231915	AT1G01640.1 CDS  gene_syn T1N6.2, T1N6_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product speckle-type POZ protein-related  note speckle-type POZ protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT3G56230.1); Has 3944 Blast hits to 3857 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 3305; Fungi - 7; Plants - 459; Viruses - 32; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G01640.1p  transcript_id AT1G01640.1  protein_id AT1G01640.1p  transcript_id AT1G01640.1  
At1g01640	chr1:000231164	0.0	C/231164-231655,231784-231915	AT1G01640.2 CDS  gene_syn T1N6.2, T1N6_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product speckle-type POZ protein-related  note speckle-type POZ protein-related; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: speckle-type POZ protein-related (TAIR:AT3G56230.1); Has 3944 Blast hits to 3857 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 3305; Fungi - 7; Plants - 459; Viruses - 32; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G01640.2p  transcript_id AT1G01640.2  protein_id AT1G01640.2p  transcript_id AT1G01640.2  
At1g01650	chr1:000233188	0.0	C/233188-233297,233387-233470,233548-233618,234250-234392,234529-234621,234935-234988,235198-235360,235718-235752,235845-236027,236145-236296,236429-236537	AT1G01650.2 CDS  gene_syn T1N6.3, T1N6_3  go_component integral to membrane|GO:0016021||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product aspartic-type endopeptidase/ peptidase  note aspartic-type endopeptidase/ peptidase; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: protease-associated (PA) domain-containing protein (TAIR:AT1G63690.1); Has 719 Blast hits to 695 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 394; Fungi - 92; Plants - 137; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G01650.2p  transcript_id AT1G01650.2  protein_id AT1G01650.2p  transcript_id AT1G01650.2  
At1g01650	chr1:000233188	0.0	C/233188-233297,233387-233470,233548-233618,234250-234392,234529-234621,234935-234988,235198-235360,235718-235752,235845-236027,236145-236296,236429-236548,236673-236784,236865-237023,237504-237647	AT1G01650.1 CDS  gene_syn T1N6.3, T1N6_3  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product aspartic-type endopeptidase/ peptidase  note aspartic-type endopeptidase/ peptidase; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: protease-associated (PA) domain-containing protein (TAIR:AT1G63690.1); Has 1108 Blast hits to 1084 proteins in 196 species: Archae - 0; Bacteria - 119; Metazoa - 534; Fungi - 104; Plants - 174; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).  protein_id AT1G01650.1p  transcript_id AT1G01650.1  protein_id AT1G01650.1p  transcript_id AT1G01650.1  
At1g01660	chr1:000240057	0.0	C/240057-240242,240352-240672,240744-240884,240960-241226,241306-241443,241539-241719,241805-241909,241983-242113,242214-242290,242449-242608	AT1G01660.1 CDS  gene_syn T1N6.4, T1N6_4  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein kinase family protein / U-box domain-containing protein (TAIR:AT2G45910.1); Has 62005 Blast hits to 34279 proteins in 1446 species: Archae - 563; Bacteria - 5706; Metazoa - 31241; Fungi - 3963; Plants - 2717; Viruses - 209; Other Eukaryotes - 17606 (source: NCBI BLink).  protein_id AT1G01660.1p  transcript_id AT1G01660.1  protein_id AT1G01660.1p  transcript_id AT1G01660.1  
At1g01670	chr1:000242943	0.0	C/242943-243128,243336-243746,244035-244182,244257-244361,244505-244635,244770-244873,245151-245163	AT1G01670.1 CDS  gene_syn T1N6.28, T1N6_28  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT1G01680.1); Has 2979 Blast hits to 2299 proteins in 198 species: Archae - 2; Bacteria - 86; Metazoa - 849; Fungi - 177; Plants - 922; Viruses - 10; Other Eukaryotes - 933 (source: NCBI BLink).  protein_id AT1G01670.1p  transcript_id AT1G01670.1  protein_id AT1G01670.1p  transcript_id AT1G01670.1  
At1g01680	chr1:000246411	0.0	C/246411-246608,246731-246853,246949-247078,247167-247268,247362-247492,247577-247680,248191-248329	AT1G01680.1 CDS  gene_syn T1N6.5, T1N6_5  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein (TAIR:AT1G01670.1); Has 1312 Blast hits to 1231 proteins in 109 species: Archae - 0; Bacteria - 18; Metazoa - 184; Fungi - 15; Plants - 941; Viruses - 3; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT1G01680.1p  transcript_id AT1G01680.1  protein_id AT1G01680.1p  transcript_id AT1G01680.1  
At1g01690	chr1:000249242	0.0	W/249242-249306,249543-249693,249774-249930,250017-250151,250536-250588,250669-250863,251004-251066,251143-251184,251260-251316,251399-251440,251539-251594,251680-251827,251922-252006,252121-252221	AT1G01690.1 CDS  gene_syn T1N6.6, T1N6_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 182 Blast hits to 180 proteins in 58 species: Archae - 2; Bacteria - 52; Metazoa - 80; Fungi - 4; Plants - 16; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G01690.1p  transcript_id AT1G01690.1  protein_id AT1G01690.1p  transcript_id AT1G01690.1  
At1g01695	chr1:000252947	0.0	W/252947-253457,253531-253679,253775-253874,253954-254495	AT1G01695.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00440.3); Has 50 Blast hits to 50 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01695.1p  transcript_id AT1G01695.1  protein_id AT1G01695.1p  transcript_id AT1G01695.1  
At1g01700	chr1:000259495	0.0	C/259495-259614,259690-260034,260118-260417,260508-260582,260670-260824,260921-261037,261129-261474	AT1G01700.1 CDS  gene_syn ATROPGEF2, KINASE PARTNER PROTEIN-LIKE, KPP-LIKE, ROPGEF2, T1N6.8, T1N6_8  gene ROPGEF2  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|IDA  go_function protein binding|GO:0005515|15980860|TAS  product ROPGEF2; Rho guanyl-nucleotide exchange factor/ protein binding  note ROPGEF2; FUNCTIONS IN: protein binding, Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: Rho guanyl-nucleotide exchange factor (TAIR:AT4G00460.2); Has 173 Blast hits to 172 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01700.1p  transcript_id AT1G01700.1  protein_id AT1G01700.1p  transcript_id AT1G01700.1  
At1g01710	chr1:000262950	0.0	W/262950-262965,263047-263139,263232-263299,263369-263444,263526-263572,263645-263770,263857-263934,264073-264160,264280-264392,264520-264582,264657-264712,264797-264901,265021-265077,265336-265437,265578-265626,265777-265845,265952-266029	AT1G01710.1 CDS  gene_syn T1N6.10, T1N6.9, T1N6_10, T1N6_9  go_component peroxisome|GO:0005777|17951448|IDA  go_process acyl-CoA metabolic process|GO:0006637||IEA  go_function acyl-CoA thioesterase activity|GO:0016291||IEA  go_process acyl-CoA metabolic process|GO:0006637||ISS  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product acyl-CoA thioesterase family protein  note acyl-CoA thioesterase family protein; FUNCTIONS IN: cyclic nucleotide binding, acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acyl-CoA thioesterase family protein (TAIR:AT4G00520.2); Has 2588 Blast hits to 2566 proteins in 602 species: Archae - 0; Bacteria - 1102; Metazoa - 404; Fungi - 233; Plants - 38; Viruses - 0; Other Eukaryotes - 811 (source: NCBI BLink).  protein_id AT1G01710.1p  transcript_id AT1G01710.1  protein_id AT1G01710.1p  transcript_id AT1G01710.1  
At1g01720	chr1:000268471	0.0	W/268471-268630,268717-268994,269083-269514	AT1G01720.1 CDS  gene_syn ANAC002, ATAF1, Arabidopsis NAC domain containing protein 2, T1N6.12, T1N6_12  gene ATAF1  function Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_process response to wounding|GO:0009611|11516145|IEP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|18694460|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|11516145|TAS  product ATAF1; transcription activator/ transcription factor  note ATAF1; FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, negative regulation of abscisic acid mediated signaling, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac032 (Arabidopsis NAC domain containing protein 32); transcription factor (TAIR:AT1G77450.1); Has 1635 Blast hits to 1632 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1635; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01720.1p  transcript_id AT1G01720.1  protein_id AT1G01720.1p  transcript_id AT1G01720.1  
At1g01725	chr1:000270016	0.0	C/270016-270090,270622-270735	AT1G01725.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01725.1p  transcript_id AT1G01725.1  protein_id AT1G01725.1p  transcript_id AT1G01725.1  
At1g01730	chr1:000271002	0.0	W/271002-271289,271379-271433,271541-271872	AT1G01730.1 CDS  gene_syn T1N6.14, T1N6_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01730.1p  transcript_id AT1G01730.1  protein_id AT1G01730.1p  transcript_id AT1G01730.1  
At1g01740	chr1:000272111	0.0	C/272111-272362,272445-272555,272651-272983,273064-273149,273234-273339,273429-273562,273653-273788,273863-274083,274167-274239	AT1G01740.1 CDS  gene_syn T1N6.15, T1N6_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: BSK3 (BR-SIGNALING KINASE 3); ATP binding / binding / kinase/ protein kinase/ protein tyrosine kinase (TAIR:AT4G00710.1); Has 21378 Blast hits to 20996 proteins in 857 species: Archae - 6; Bacteria - 1226; Metazoa - 6677; Fungi - 136; Plants - 12135; Viruses - 92; Other Eukaryotes - 1106 (source: NCBI BLink).  protein_id AT1G01740.1p  transcript_id AT1G01740.1  protein_id AT1G01740.1p  transcript_id AT1G01740.1  
At1g01750	chr1:000275528	0.0	W/275528-275530,275632-275897,275973-276126	AT1G01750.1 CDS  gene_syn ACTIN DEPOLYMERIZING FACTOR 11, ADF11, T1N6.16, T1N6_16  gene ADF11  go_component intracellular|GO:0005622||IEA  go_function actin binding|GO:0003779||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  product ADF11 (ACTIN DEPOLYMERIZING FACTOR 11); actin binding  note ACTIN DEPOLYMERIZING FACTOR 11 (ADF11); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: ADF8 (ACTIN DEPOLYMERIZING FACTOR 8); actin binding (TAIR:AT4G00680.1); Has 1202 Blast hits to 1183 proteins in 208 species: Archae - 0; Bacteria - 3; Metazoa - 637; Fungi - 111; Plants - 307; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT1G01750.1p  transcript_id AT1G01750.1  protein_id AT1G01750.1p  transcript_id AT1G01750.1  
At1g01760	chr1:000276412	0.0	C/276412-276519,276706-276793,276870-276989,277077-277153,277232-277401,277493-277606,277717-277863,277947-278252,278316-278448	AT1G01760.1 CDS  gene_syn T1N6.17, T1N6_17  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function adenosine deaminase activity|GO:0004000||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function adenosine deaminase activity|GO:0004000||ISS  product RNA binding / adenosine deaminase  note RNA binding / adenosine deaminase; FUNCTIONS IN: RNA binding, adenosine deaminase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenosine deaminase/editase (InterPro:IPR002466); Has 707 Blast hits to 645 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 542; Fungi - 79; Plants - 27; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G01760.1p  transcript_id AT1G01760.1  protein_id AT1G01760.1p  transcript_id AT1G01760.1  
At1g01770	chr1:000278759	0.0	W/278759-278809,278887-279088,279166-279240,279327-279425,279536-279576,279797-279910,279974-280088,280180-280370,280449-280568,280657-280737,280889-281121,281309-281348,281438-281536,281759-282189,282484-282490	AT1G01770.1 CDS  gene_syn T1N6.18, T1N6_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1139 Blast hits to 1078 proteins in 171 species: Archae - 0; Bacteria - 475; Metazoa - 18; Fungi - 70; Plants - 13; Viruses - 0; Other Eukaryotes - 563 (source: NCBI BLink).  protein_id AT1G01770.1p  transcript_id AT1G01770.1  protein_id AT1G01770.1p  transcript_id AT1G01770.1  
At1g01780	chr1:000282919	0.0	W/282919-283053,283132-283231,283314-283336,283444-283533,283813-284082	AT1G01780.1 CDS  gene_syn T1N6.19, T1N6_19  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product LIM domain-containing protein  note LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G45800.1); Has 3943 Blast hits to 2435 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 3416; Fungi - 12; Plants - 261; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G01780.1p  transcript_id AT1G01780.1  protein_id AT1G01780.1p  transcript_id AT1G01780.1  
At1g01790	chr1:000284781	0.0	W/284781-286351,286452-286623,286717-286807,286997-287133,287221-287280,287395-287514,287642-287710,287789-287854,288087-288176,288401-288505,288593-288721,288882-289091,289237-289386,289539-289592,289718-289776,290028-290094,290170-290346,290439-290495,290578-290652,290747-290869	AT1G01790.1 CDS  gene_syn ATKEA1, K EFFLUX ANTIPORTER 1, KEA1, T1N6.21, T1N6_21  gene KEA1  function K efflux antiporter KEA1  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process cation transport|GO:0006812||IEA  go_process potassium ion transport|GO:0006813||IEA  go_process metabolic process|GO:0008152||IEA  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  go_function potassium:hydrogen antiporter activity|GO:0015386||ISS  product KEA1 (K EFFLUX ANTIPORTER 1); potassium ion transmembrane transporter/ potassium:hydrogen antiporter  note K EFFLUX ANTIPORTER 1 (KEA1); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771), Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: KEA2; potassium ion transmembrane transporter/ potassium:hydrogen antiporter (TAIR:AT4G00630.1); Has 17551 Blast hits to 14677 proteins in 1600 species: Archae - 450; Bacteria - 6559; Metazoa - 5332; Fungi - 777; Plants - 522; Viruses - 54; Other Eukaryotes - 3857 (source: NCBI BLink).  protein_id AT1G01790.1p  transcript_id AT1G01790.1  protein_id AT1G01790.1p  transcript_id AT1G01790.1  
At1g01800	chr1:000293396	0.0	W/293396-293409,293500-293752,294055-294120,294210-294386,294511-294888	AT1G01800.1 CDS  gene_syn T1N6.22, T1N6_22  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G61220.1); Has 43005 Blast hits to 42969 proteins in 1859 species: Archae - 319; Bacteria - 25615; Metazoa - 3418; Fungi - 2138; Plants - 1330; Viruses - 0; Other Eukaryotes - 10185 (source: NCBI BLink).  protein_id AT1G01800.1p  transcript_id AT1G01800.1  protein_id AT1G01800.1p  transcript_id AT1G01800.1  
At1g01800	chr1:000293595	0.0	W/293595-293756,294055-294120,294210-294386,294511-294888	AT1G01800.2 CDS  gene_syn T1N6.22, T1N6_22  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G61220.1); Has 791 Blast hits to 786 proteins in 197 species: Archae - 4; Bacteria - 273; Metazoa - 229; Fungi - 29; Plants - 157; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G01800.2p  transcript_id AT1G01800.2  protein_id AT1G01800.2p  transcript_id AT1G01800.2  
At1g01810	chr1:000295242	0.0	W/295242-295724	AT1G01810.1 CDS  gene_syn T1N6.23, T1N6_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01810.1p  transcript_id AT1G01810.1  protein_id AT1G01810.1p  transcript_id AT1G01810.1  
At1g01820	chr1:000296213	0.0	C/296213-296248,296362-296535,296626-296700,296782-296862,296951-297025,297101-297175,297532-297723	AT1G01820.1 CDS  gene_syn PEROXIN 11C, PEX11C, T1N6.24, T1N6_24  gene PEX11C  function member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.  go_component peroxisomal membrane|GO:0005778||ISS  go_component integral to peroxisomal membrane|GO:0005779|17220199|IDA  go_process peroxisome organization|GO:0007031|17478547|IMP  go_process peroxisome fission|GO:0016559|17220199|IMP  go_process peroxisome fission|GO:0016559|18539750|IMP  go_process peroxisome fission|GO:0016559||ISS  go_function molecular_function|GO:0003674||ND  product PEX11C (PEROXIN 11C)  note PEROXIN 11C (PEX11C); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome fission, peroxisome organization; LOCATED IN: peroxisomal membrane, integral to peroxisomal membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: PEX11D (TAIR:AT2G45740.3); Has 192 Blast hits to 192 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 28; Plants - 102; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G01820.1p  transcript_id AT1G01820.1  protein_id AT1G01820.1p  transcript_id AT1G01820.1  
At1g01830	chr1:000298717	0.0	C/298717-300441	AT1G01830.1 CDS  gene_syn T1N6.25, T1N6_25  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G45720.2); Has 1987 Blast hits to 1326 proteins in 150 species: Archae - 2; Bacteria - 14; Metazoa - 434; Fungi - 322; Plants - 999; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT1G01830.1p  transcript_id AT1G01830.1  protein_id AT1G01830.1p  transcript_id AT1G01830.1  
At1g01830	chr1:000298717	0.0	C/298717-300441	AT1G01830.2 CDS  gene_syn T1N6.25, T1N6_25  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G45720.2); Has 1987 Blast hits to 1326 proteins in 150 species: Archae - 2; Bacteria - 14; Metazoa - 434; Fungi - 322; Plants - 999; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT1G01830.2p  transcript_id AT1G01830.2  protein_id AT1G01830.2p  transcript_id AT1G01830.2  
At1g01830	chr1:000298717	0.0	C/298717-300441	AT1G01830.3 CDS  gene_syn T1N6.25, T1N6_25  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein (TAIR:AT2G45720.2); Has 1987 Blast hits to 1326 proteins in 150 species: Archae - 2; Bacteria - 14; Metazoa - 434; Fungi - 322; Plants - 999; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).  protein_id AT1G01830.3p  transcript_id AT1G01830.3  protein_id AT1G01830.3p  transcript_id AT1G01830.3  
At1g01840	chr1:000303650	0.0	W/303650-304108	AT1G01840.1 CDS  gene_syn T1N6.26, T1N6_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01840.1p  transcript_id AT1G01840.1  protein_id AT1G01840.1p  transcript_id AT1G01840.1  
At1g01860	chr1:000304439	0.0	C/304439-304504,304697-304807,304880-304963,305038-305090,305174-305258,305347-305442,305547-305702,305785-305934,306045-306275	AT1G01860.1 CDS  gene_syn DIMETHYLADENOSINE TRANSFERASE, PALEFACE 1, PFC1  gene PFC1  function dimethyladenosine transferase  go_component chloroplast|GO:0009507||IEA  go_process response to cold|GO:0009409|9596631|IMP  go_function mRNA (2 -O-methyladenosine-N6-)-methyltransferase activity|GO:0016422|9596631|ISS  product PFC1 (PALEFACE 1); mRNA (2 -O-methyladenosine-N6-)-methyltransferase  note PALEFACE 1 (PFC1); FUNCTIONS IN: mRNA (2 -O-methyladenosine-N6-)-methyltransferase activity; INVOLVED IN: response to cold; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 6668 Blast hits to 6664 proteins in 1755 species: Archae - 141; Bacteria - 3453; Metazoa - 227; Fungi - 95; Plants - 56; Viruses - 0; Other Eukaryotes - 2696 (source: NCBI BLink).  protein_id AT1G01860.1p  transcript_id AT1G01860.1  protein_id AT1G01860.1p  transcript_id AT1G01860.1  
At1g01870	chr1:000306384	0.0	W/306384-306456	AT1G01870.1 tRNA  gene_syn 51779.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: TAC)  transcript_id AT1G01870.1  
At1g01880	chr1:000306558	0.0	C/306558-306800,306893-307073,307161-307359,307441-307805,307889-308070,308148-308318,308397-308573,308797-308991	AT1G01880.1 CDS  gene_syn F22M8.2, F22M8_2  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product DNA repair protein, putative  note DNA repair protein, putative; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: DNA binding / catalytic/ chromatin binding / nuclease (TAIR:AT3G48900.2); Has 1560 Blast hits to 1437 proteins in 260 species: Archae - 192; Bacteria - 1; Metazoa - 427; Fungi - 473; Plants - 104; Viruses - 11; Other Eukaryotes - 352 (source: NCBI BLink).  protein_id AT1G01880.1p  transcript_id AT1G01880.1  protein_id AT1G01880.1p  transcript_id AT1G01880.1  
At1g01890	chr1:000309275	0.0	C/309275-309347	AT1G01890.1 tRNA  gene_syn 51779.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT1G01890.1  
At1g01900	chr1:000310332	0.0	W/310332-310981,311337-313011	AT1G01900.1 CDS  gene_syn ATSBT1.1, F22M8.3, F22M8_3, SBTI1.1  gene SBTI1.1  function Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.  go_component cell wall|GO:0005618|15593128|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_component extracellular matrix|GO:0031012|18643977|IDA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  go_function serine-type endopeptidase activity|GO:0004252||IDA  product SBTI1.1; serine-type endopeptidase  note SBTI1.1; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: extracellular matrix, apoplast, cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ARA12; serine-type endopeptidase (TAIR:AT5G67360.1); Has 4035 Blast hits to 3674 proteins in 672 species: Archae - 120; Bacteria - 2294; Metazoa - 45; Fungi - 305; Plants - 852; Viruses - 0; Other Eukaryotes - 419 (source: NCBI BLink).  protein_id AT1G01900.1p  transcript_id AT1G01900.1  protein_id AT1G01900.1p  transcript_id AT1G01900.1  
At1g01910	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.1 CDS  gene_syn F22M8.4, F22M8_4  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase, putative  note anion-transporting ATPase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1732 Blast hits to 1465 proteins in 458 species: Archae - 112; Bacteria - 1101; Metazoa - 115; Fungi - 90; Plants - 59; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G01910.1p  transcript_id AT1G01910.1  protein_id AT1G01910.1p  transcript_id AT1G01910.1  
At1g01910	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.2 CDS  gene_syn F22M8.4, F22M8_4  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase, putative  note anion-transporting ATPase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1732 Blast hits to 1465 proteins in 458 species: Archae - 112; Bacteria - 1101; Metazoa - 115; Fungi - 90; Plants - 59; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G01910.2p  transcript_id AT1G01910.2  protein_id AT1G01910.2p  transcript_id AT1G01910.2  
At1g01910	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.4 CDS  gene_syn F22M8.4, F22M8_4  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase, putative  note anion-transporting ATPase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1732 Blast hits to 1465 proteins in 458 species: Archae - 112; Bacteria - 1101; Metazoa - 115; Fungi - 90; Plants - 59; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G01910.4p  transcript_id AT1G01910.4  protein_id AT1G01910.4p  transcript_id AT1G01910.4  
At1g01910	chr1:000313595	0.0	C/313595-313759,313880-313995,314087-314225,314441-314551,314652-314802,315577-315644	AT1G01910.5 CDS  gene_syn F22M8.4, F22M8_4  go_component endomembrane system|GO:0012505||IEA  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase, putative  note anion-transporting ATPase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1171 Blast hits to 1087 proteins in 409 species: Archae - 110; Bacteria - 683; Metazoa - 112; Fungi - 88; Plants - 56; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G01910.5p  transcript_id AT1G01910.5  protein_id AT1G01910.5p  transcript_id AT1G01910.5  
At1g01910	chr1:000313746	0.0	C/313746-313752,313872-313995,314087-314225,314441-314551,314652-314802,314891-315015,315577-315831	AT1G01910.3 CDS  gene_syn F22M8.4, F22M8_4  go_process cellular metal ion homeostasis|GO:0006875||IEA  go_function ATP binding|GO:0005524||IEA  go_component membrane|GO:0016020||ISS  go_process anion transport|GO:0006820||ISS  go_function ATP binding|GO:0005524||ISS  product anion-transporting ATPase, putative  note anion-transporting ATPase, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: anion-transporting ATPase family protein (TAIR:AT5G60730.1); Has 1727 Blast hits to 1461 proteins in 458 species: Archae - 112; Bacteria - 1099; Metazoa - 114; Fungi - 90; Plants - 58; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G01910.3p  transcript_id AT1G01910.3  protein_id AT1G01910.3p  transcript_id AT1G01910.3  
At1g01920	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317439,317553-317642,317765-317845,317979-318040,318145-318201,318362-318433,318565-318813,318986-319101,319204-319296,319372-319507	AT1G01920.2 CDS  gene_syn F22M8.5, F22M8_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative (TAIR:AT1G14030.1); Has 454 Blast hits to 452 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 155; Plants - 108; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G01920.2p  transcript_id AT1G01920.2  protein_id AT1G01920.2p  transcript_id AT1G01920.2  
At1g01920	chr1:000316204	0.0	W/316204-316257,316344-316440,316539-316713,316792-316897,317008-317090,317167-317193,317294-317456,317561-317642,317765-317845,317979-318040,318145-318201,318296-318433,318565-318813,318986-319101,319204-319296,319372-319507	AT1G01920.1 CDS  gene_syn F22M8.5, F22M8_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative (TAIR:AT1G14030.1); Has 423 Blast hits to 420 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 142; Plants - 99; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G01920.1p  transcript_id AT1G01920.1  protein_id AT1G01920.1p  transcript_id AT1G01920.1  
At1g01930	chr1:000320041	0.0	C/320041-320145,320252-320296,320380-320457,320769-321422,321751-321865,321958-322406,322513-322809	AT1G01930.1 CDS  gene_syn F22M8.6, F22M8_6  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ankyrin (InterPro:IPR002110); Has 1722 Blast hits to 1411 proteins in 265 species: Archae - 1; Bacteria - 222; Metazoa - 535; Fungi - 306; Plants - 79; Viruses - 11; Other Eukaryotes - 568 (source: NCBI BLink).  protein_id AT1G01930.1p  transcript_id AT1G01930.1  protein_id AT1G01930.1p  transcript_id AT1G01930.1  
At1g01940	chr1:000323082	0.0	W/323082-323084,323208-323282,323679-323840,324258-324416,324636-324719	AT1G01940.1 CDS  gene_syn F22M8.7, F22M8_7  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (TAIR:AT5G67530.1); Has 12360 Blast hits to 12299 proteins in 1530 species: Archae - 82; Bacteria - 4014; Metazoa - 2345; Fungi - 959; Plants - 726; Viruses - 0; Other Eukaryotes - 4234 (source: NCBI BLink).  protein_id AT1G01940.1p  transcript_id AT1G01940.1  protein_id AT1G01940.1p  transcript_id AT1G01940.1  
At1g01950	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328504,328898-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.2 CDS  gene_syn ARK2, ARMADILLO REPEAT KINESIN 2, F22M8.8, F22M8_8  gene ARK2  function Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_process root development|GO:0048364|17971038|IMP  go_function microtubule motor activity|GO:0003777||ISS  product armadillo/beta-catenin repeat family protein / kinesin motor family protein  note ARMADILLO REPEAT KINESIN 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ARK3 (ARMADILLO REPEAT KINESIN 3); ATP binding / binding / microtubule motor (TAIR:AT1G12430.1).  protein_id AT1G01950.2p  transcript_id AT1G01950.2  protein_id AT1G01950.2p  transcript_id AT1G01950.2  
At1g01950	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328555,328686-328734,328884-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.3 CDS  gene_syn ARK2, ARMADILLO REPEAT KINESIN 2, F22M8.8, F22M8_8  gene ARK2  function Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_process root development|GO:0048364|17971038|IMP  go_function microtubule motor activity|GO:0003777||ISS  product armadillo/beta-catenin repeat family protein / kinesin motor family protein  note ARMADILLO REPEAT KINESIN 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ARK3 (ARMADILLO REPEAT KINESIN 3); ATP binding / binding / microtubule motor (TAIR:AT1G12430.1).  protein_id AT1G01950.3p  transcript_id AT1G01950.3  protein_id AT1G01950.3p  transcript_id AT1G01950.3  
At1g01950	chr1:000325473	0.0	W/325473-325641,325913-326013,326106-326228,326332-326517,326594-326815,326931-327084,327237-327386,327488-327576,327663-327866,328000-328107,328188-328322,328424-328555,328898-329030,329119-329211,329311-329436,329573-329698,329781-329924,330027-330155,330243-330403	AT1G01950.1 CDS  gene_syn ARK2, ARMADILLO REPEAT KINESIN 2, F22M8.8, F22M8_8  gene ARK2  function Encodes a member of the armadillo/beta-catenin repeat kinesin motor family. Mutants have twisted roots due to abnormal cell file rotation; the phenotype is dependent on microtubules.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_process root development|GO:0048364|17971038|IMP  go_function microtubule motor activity|GO:0003777||ISS  product armadillo/beta-catenin repeat family protein / kinesin motor family protein  note ARMADILLO REPEAT KINESIN 2 (ARK2); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: root development; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ARK3 (ARMADILLO REPEAT KINESIN 3); ATP binding / binding / microtubule motor (TAIR:AT1G12430.1); Has 15213 Blast hits to 12809 proteins in 498 species: Archae - 49; Bacteria - 483; Metazoa - 7194; Fungi - 1437; Plants - 1421; Viruses - 18; Other Eukaryotes - 4611 (source: NCBI BLink).  protein_id AT1G01950.1p  transcript_id AT1G01950.1  protein_id AT1G01950.1p  transcript_id AT1G01950.1  
At1g01960	chr1:000330830	0.0	C/330830-331423,331534-332183,332276-332633,332724-333045,333129-333628,333905-334178,334471-334763,334899-335321,335419-335773,335916-336233,336417-337582	AT1G01960.1 CDS  gene_syn EDA10, F22M8.9, F22M8_9, embryo sac development arrest 10  gene EDA10  go_function ARF guanyl-nucleotide exchange factor activity|GO:0005086||IEA  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process megagametogenesis|GO:0009561|15634699|IMP  go_function guanyl-nucleotide exchange factor activity|GO:0005085||ISS  product EDA10 (embryo sac development arrest 10); ARF guanyl-nucleotide exchange factor/ binding / guanyl-nucleotide exchange factor  note embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2204 Blast hits to 1991 proteins in 178 species: Archae - 0; Bacteria - 26; Metazoa - 1252; Fungi - 425; Plants - 143; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G01960.1p  transcript_id AT1G01960.1  protein_id AT1G01960.1p  transcript_id AT1G01960.1  
At1g01970	chr1:000338538	0.0	W/338538-338987,339126-339905	AT1G01970.1 CDS  gene_syn F22M8.10, F22M8_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: NFD5 (NUCLEAR FUSION DEFECTIVE 5) (TAIR:AT1G19520.1); Has 7256 Blast hits to 3017 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 5; Plants - 6997; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT1G01970.1p  transcript_id AT1G01970.1  protein_id AT1G01970.1p  transcript_id AT1G01970.1  
At1g01980	chr1:000340374	0.0	C/340374-341999	AT1G01980.1 CDS  gene_syn ATSEC1A, F22M8.11, F22M8_11, SEC1A, SIMILAR TO ELECTRON CAREER 1A  gene ATSEC1A  function member of Reticuline oxidase-like family  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product ATSEC1A; FAD binding / catalytic/ electron carrier/ oxidoreductase  note ATSEC1A; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD binding / catalytic/ electron carrier/ oxidoreductase (TAIR:AT1G11770.1); Has 2470 Blast hits to 2340 proteins in 370 species: Archae - 10; Bacteria - 939; Metazoa - 0; Fungi - 1059; Plants - 363; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G01980.1p  transcript_id AT1G01980.1  protein_id AT1G01980.1p  transcript_id AT1G01980.1  
At1g01990	chr1:000343462	0.0	C/343462-344199	AT1G01990.1 CDS  gene_syn F22M8.12, F22M8_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: chloroplast lumen common family protein (TAIR:AT2G37400.1); Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G01990.1p  transcript_id AT1G01990.1  protein_id AT1G01990.1p  transcript_id AT1G01990.1  
At1g02000	chr1:000346052	0.0	W/346052-347356	AT1G02000.1 CDS  gene_syn F22M8.13, F22M8_13, GAE2, UDP-D-GLUCURONATE 4-EPIMERASE 2  gene GAE2  function UDP-D-glucuronate 4-epimerase  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_function catalytic activity|GO:0003824||ISS  go_function UDP-glucuronate 4-epimerase activity|GO:0050378|15247385|ISS  product GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2); UDP-glucuronate 4-epimerase/ catalytic  note UDP-D-GLUCURONATE 4-EPIMERASE 2 (GAE2); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3); UDP-glucuronate 4-epimerase/ catalytic (TAIR:AT4G00110.1); Has 30897 Blast hits to 30894 proteins in 1698 species: Archae - 472; Bacteria - 14615; Metazoa - 642; Fungi - 282; Plants - 684; Viruses - 31; Other Eukaryotes - 14171 (source: NCBI BLink).  protein_id AT1G02000.1p  transcript_id AT1G02000.1  protein_id AT1G02000.1p  transcript_id AT1G02000.1  
At1g02010	chr1:000348046	0.0	W/348046-348127,348212-348267,348373-348454,348562-348640,348735-348785,348880-348976,349067-349099,349238-349366,349550-349720,349803-349886,350049-350147,350226-350296,350474-350570,350658-350783,350871-350966,351044-351160,351252-351329,351412-351632,351729-351819,351912-352001,352126-352197	AT1G02010.1 CDS  gene_syn SEC1A, SIMILAR TO ELECTRON CAREER 1A  gene SEC1A  function member of KEULE Gene Family  go_process vesicle docking during exocytosis|GO:0006904||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component cellular_component|GO:0005575||ND  go_process protein secretion|GO:0009306||ISS  go_function protein transporter activity|GO:0008565||ISS  product SEC1A (SIMILAR TO ELECTRON CAREER 1A); protein transporter  note SIMILAR TO ELECTRON CAREER 1A (SEC1A); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking during exocytosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: KEU (keule); protein transporter (TAIR:AT1G12360.1); Has 1278 Blast hits to 1258 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 603; Fungi - 314; Plants - 108; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT1G02010.1p  transcript_id AT1G02010.1  protein_id AT1G02010.1p  transcript_id AT1G02010.1  
At1g02020	chr1:000352842	0.0	C/352842-353162,353238-354845	AT1G02020.1 CDS  gene_syn T7I23.2, T7I23_2  go_component chloroplast|GO:0009507|18431481|IDA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor|GO:0016657||ISS  product nitroreductase family protein  note nitroreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitroreductase (InterPro:IPR000415); Has 465 Blast hits to 402 proteins in 182 species: Archae - 87; Bacteria - 350; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G02020.1p  transcript_id AT1G02020.1  protein_id AT1G02020.1p  transcript_id AT1G02020.1  
At1g02020	chr1:000353214	0.0	C/353214-354845	AT1G02020.2 CDS  gene_syn T7I23.2, T7I23_2  go_component chloroplast|GO:0009507|18431481|IDA  go_function oxidoreductase activity|GO:0016491||IEA  go_process metabolic process|GO:0008152||ISS  go_function oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor|GO:0016657||ISS  product nitroreductase family protein  note nitroreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitroreductase (InterPro:IPR000415); Has 403 Blast hits to 394 proteins in 182 species: Archae - 64; Bacteria - 312; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G02020.2p  transcript_id AT1G02020.2  protein_id AT1G02020.2p  transcript_id AT1G02020.2  
At1g02030	chr1:000355385	0.0	C/355385-356188	AT1G02030.1 CDS  gene_syn T7I23.3, T7I23_3  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G60580.1); Has 2466 Blast hits to 2097 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 1830; Fungi - 19; Plants - 535; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT1G02030.1p  transcript_id AT1G02030.1  protein_id AT1G02030.1p  transcript_id AT1G02030.1  
At1g02040	chr1:000358104	0.0	C/358104-359078	AT1G02040.1 CDS  gene_syn T7I23.24, T7I23_24  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G35280.1); Has 5788 Blast hits to 3289 proteins in 256 species: Archae - 2; Bacteria - 122; Metazoa - 2935; Fungi - 454; Plants - 650; Viruses - 258; Other Eukaryotes - 1367 (source: NCBI BLink).  protein_id AT1G02040.1p  transcript_id AT1G02040.1  protein_id AT1G02040.1p  transcript_id AT1G02040.1  
At1g02050	chr1:000359164	0.0	C/359164-360149,360240-360441	AT1G02050.1 CDS  gene_syn T7I23.4, T7I23_4  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process phenylpropanoid biosynthetic process|GO:0009699||ISS  go_process pollen exine formation|GO:0010584||IMP  product chalcone and stilbene synthase family protein  note chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, pollen exine formation; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: chalcone and stilbene synthase family protein (TAIR:AT4G00040.1); Has 4641 Blast hits to 4636 proteins in 1083 species: Archae - 0; Bacteria - 1519; Metazoa - 0; Fungi - 48; Plants - 2843; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G02050.1p  transcript_id AT1G02050.1  protein_id AT1G02050.1p  transcript_id AT1G02050.1  
At1g02060	chr1:000360918	0.0	C/360918-363050	AT1G02060.1 CDS  gene_syn T7I23.14, T7I23_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G37230.1); Has 18912 Blast hits to 5842 proteins in 180 species: Archae - 4; Bacteria - 22; Metazoa - 373; Fungi - 390; Plants - 17444; Viruses - 0; Other Eukaryotes - 679 (source: NCBI BLink).  protein_id AT1G02060.1p  transcript_id AT1G02060.1  protein_id AT1G02060.1p  transcript_id AT1G02060.1  
At1g02065	chr1:000365625	0.0	W/365625-366325,366723-366859,366986-367149	AT1G02065.1 CDS  gene_syn SPL8, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8  gene SPL8  function Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation.  go_component nucleus|GO:0005634|12671094|ISS  go_component nucleus|GO:0005634||ISS  go_process megasporogenesis|GO:0009554|12671094|IMP  go_process microsporogenesis|GO:0009556|12671094|IMP  go_function DNA binding|GO:0003677|12671094|ISS  go_function DNA binding|GO:0003677||ISS  product SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8 (SPL8); FUNCTIONS IN: DNA binding; INVOLVED IN: microsporogenesis, megasporogenesis; LOCATED IN: nucleus; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 6 (SPL6) (TAIR:AT1G69170.1); Has 611 Blast hits to 582 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 62; Fungi - 4; Plants - 531; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G02065.1p  transcript_id AT1G02065.1  protein_id AT1G02065.1p  transcript_id AT1G02065.1  
At1g02065	chr1:000365625	0.0	W/365625-366365	AT1G02065.2 CDS  gene_syn SPL8, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8  gene SPL8  function Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation.  go_component nucleus|GO:0005634|12671094|ISS  go_component nucleus|GO:0005634||ISS  go_process megasporogenesis|GO:0009554|12671094|IMP  go_process microsporogenesis|GO:0009556|12671094|IMP  go_function DNA binding|GO:0003677|12671094|ISS  go_function DNA binding|GO:0003677||ISS  product SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8); DNA binding  note SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8 (SPL8); FUNCTIONS IN: DNA binding; INVOLVED IN: microsporogenesis, megasporogenesis; LOCATED IN: nucleus; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor (TAIR:AT2G42200.1); Has 470 Blast hits to 470 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 4; Plants - 440; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G02065.2p  transcript_id AT1G02065.2  protein_id AT1G02065.2p  transcript_id AT1G02065.2  
At1g02070	chr1:000370445	0.0	C/370445-370751,370859-370947	AT1G02070.1 CDS  gene_syn T7I23.30, T7I23_30  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 52 Blast hits to 52 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02070.1p  transcript_id AT1G02070.1  protein_id AT1G02070.1p  transcript_id AT1G02070.1  
At1g02074	chr1:000372064	0.0	W/372064-372210	AT1G02074.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G02074.1p  transcript_id AT1G02074.1  protein_id AT1G02074.1p  transcript_id AT1G02074.1  
At1g02080	chr1:000373694	0.0	W/373694-373786,373892-374189,374272-374500,374583-374922,375122-375238,375325-375453,375528-375719,375808-376002,376114-376251,376352-376474,376562-376815,376925-377028,377211-377305,377391-377615,377881-378036,378119-378191,378298-378365,378504-378649,378746-378854,378943-379089,379183-379230,379305-379433,379528-379770,379866-380003,380089-380174,380270-380375,380602-380697,380846-380998,381150-381332,381405-381634,381730-381832,381912-382040,382127-382171,382373-382567,382803-382929,383030-383130,383395-383529,383608-383688,384084-384230,384318-384449,384558-384605,384694-384840,384908-384969,385171-385324,385432-385623,385713-385817,385909-386043,386133-386333,386428-386682	AT1G02080.1 CDS  gene_syn T7I23.15, T7I23_15  go_component membrane|GO:0016020|17432890|IDA  go_function transcription regulator activity|GO:0030528||ISS  product transcriptional regulator-related  note transcriptional regulator-related; FUNCTIONS IN: transcription regulator activity; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196); Has 1072 Blast hits to 502 proteins in 170 species: Archae - 0; Bacteria - 115; Metazoa - 354; Fungi - 245; Plants - 79; Viruses - 0; Other Eukaryotes - 279 (source: NCBI BLink).  protein_id AT1G02080.1p  transcript_id AT1G02080.1  protein_id AT1G02080.1p  transcript_id AT1G02080.1  
At1g02090	chr1:000387479	0.0	C/387479-387503,387584-387672,388268-388406,388539-388609,388716-388760,388851-388940,389050-389138,389226-389301,389410-389568	AT1G02090.1 CDS  gene_syn ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, ATCSN7, CONSTITUTIVE PHOTOMORPHOGENIC 15, COP15, COP9 SIGNALOSOME SUBUNIT 7, CSN7, FUS5, FUSCA 5, T7I23.25, T7I23_25  gene FUS5  function encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.  go_component nucleus|GO:0005634|10330469|ISS  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function MAP kinase kinase activity|GO:0004708|10330469|ISS  product FUS5 (FUSCA 5); MAP kinase kinase  note FUSCA 5 (FUS5); FUNCTIONS IN: MAP kinase kinase activity; INVOLVED IN: cullin deneddylation, signalosome assembly, photomorphogenesis; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); Has 510 Blast hits to 510 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 347; Fungi - 96; Plants - 43; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G02090.1p  transcript_id AT1G02090.1  protein_id AT1G02090.1p  transcript_id AT1G02090.1  
At1g02090	chr1:000387647	0.0	C/387647-387655,388268-388406,388539-388609,388716-388760,388851-388940,389050-389138,389226-389301,389410-389568	AT1G02090.2 CDS  gene_syn ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, ATCSN7, CONSTITUTIVE PHOTOMORPHOGENIC 15, COP15, COP9 SIGNALOSOME SUBUNIT 7, CSN7, FUS5, FUSCA 5, T7I23.25, T7I23_25  gene FUS5  function encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.  go_component nucleus|GO:0005634|10330469|ISS  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function MAP kinase kinase activity|GO:0004708|10330469|ISS  product FUS5 (FUSCA 5); MAP kinase kinase  note FUSCA 5 (FUS5); FUNCTIONS IN: MAP kinase kinase activity; INVOLVED IN: cullin deneddylation, signalosome assembly, photomorphogenesis; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); Has 508 Blast hits to 508 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 347; Fungi - 94; Plants - 43; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G02090.2p  transcript_id AT1G02090.2  protein_id AT1G02090.2p  transcript_id AT1G02090.2  
At1g02090	chr1:000388223	0.0	C/388223-388406,388539-388609,388716-388760,388851-388940,389050-389138,389226-389301,389410-389568	AT1G02090.3 CDS  gene_syn ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, ATCSN7, CONSTITUTIVE PHOTOMORPHOGENIC 15, COP15, COP9 SIGNALOSOME SUBUNIT 7, CSN7, FUS5, FUSCA 5, T7I23.25, T7I23_25  gene FUS5  function encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.  go_component nucleus|GO:0005634|10330469|ISS  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function MAP kinase kinase activity|GO:0004708|10330469|ISS  product FUS5 (FUSCA 5); MAP kinase kinase  note FUSCA 5 (FUS5); FUNCTIONS IN: MAP kinase kinase activity; INVOLVED IN: cullin deneddylation, signalosome assembly, photomorphogenesis; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); Has 508 Blast hits to 508 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 347; Fungi - 94; Plants - 43; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G02090.3p  transcript_id AT1G02090.3  protein_id AT1G02090.3p  transcript_id AT1G02090.3  
At1g02100	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392072,392262-392300,392374-392448	AT1G02100.1 CDS  gene_syn T7I23.16, T7I23_16  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function methyltransferase activity|GO:0008168||ISS  product leucine carboxyl methyltransferase family protein  note leucine carboxyl methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase, LCTM1 1 (InterPro:IPR016651), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 455 Blast hits to 446 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 191; Plants - 22; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G02100.1p  transcript_id AT1G02100.1  protein_id AT1G02100.1p  transcript_id AT1G02100.1  
At1g02100	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392072,392262-392300,392374-392448	AT1G02100.3 CDS  gene_syn T7I23.16, T7I23_16  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function methyltransferase activity|GO:0008168||ISS  product leucine carboxyl methyltransferase family protein  note leucine carboxyl methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase, LCTM1 1 (InterPro:IPR016651), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 455 Blast hits to 446 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 191; Plants - 22; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G02100.3p  transcript_id AT1G02100.3  protein_id AT1G02100.3p  transcript_id AT1G02100.3  
At1g02100	chr1:000389876	0.0	W/389876-389943,390037-390250,390352-390399,390483-390564,390762-390864,391003-391123,391216-391263,391458-391541,391652-391716,392021-392076,392262-392293	AT1G02100.2 CDS  gene_syn T7I23.16, T7I23_16  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function methyltransferase activity|GO:0008168||ISS  product leucine carboxyl methyltransferase family protein  note leucine carboxyl methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine carboxyl methyltransferase, LCTM1 1 (InterPro:IPR016651), Leucine carboxyl methyltransferase (InterPro:IPR007213); Has 451 Blast hits to 446 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 191; Plants - 22; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G02100.2p  transcript_id AT1G02100.2  protein_id AT1G02100.2p  transcript_id AT1G02100.2  
At1g02110	chr1:000392939	0.0	W/392939-393875,393966-394153,394228-394297,394370-394451,394672-395434	AT1G02110.1 CDS  gene_syn T7I23.5, T7I23_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G60320.1); Has 562 Blast hits to 489 proteins in 95 species: Archae - 0; Bacteria - 19; Metazoa - 68; Fungi - 68; Plants - 340; Viruses - 13; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G02110.1p  transcript_id AT1G02110.1  protein_id AT1G02110.1p  transcript_id AT1G02110.1  
At1g02120	chr1:000395761	0.0	W/395761-395946,396029-396088,396167-396217,396291-396356,396439-396534,396609-396725,396793-396863,396941-397098,397703-397743,397877-397964,398065-398151,398292-398346,398460-398526,398614-398713,398905-398966,399068-399110,399182-399393,399484-399720	AT1G02120.1 CDS  gene_syn T7I23.28, T7I23_28, VAD1, VASCULAR ASSOCIATED DEATH1  gene VAD1  function Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system.  go_component chloroplast|GO:0009507||IEA  go_process defense response to bacterium|GO:0042742|15269331|IMP  go_process negative regulation of programmed cell death|GO:0043069|15269331|IMP  product VAD1 (VASCULAR ASSOCIATED DEATH1)  note VASCULAR ASSOCIATED DEATH1 (VAD1); INVOLVED IN: defense response to bacterium, negative regulation of programmed cell death; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein / GRAM domain-containing protein (TAIR:AT3G59660.1); Has 860 Blast hits to 758 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 522; Fungi - 152; Plants - 71; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G02120.1p  transcript_id AT1G02120.1  protein_id AT1G02120.1p  transcript_id AT1G02120.1  
At1g02130	chr1:000400350	0.0	C/400350-400446,400725-400828,400931-401086,401164-401235,401323-401370,401461-401508,401595-401667,401775-401788	AT1G02130.1 CDS  gene_syn ARA-5, ARA5, ARABIDOPSIS RAS 5, ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ATRAB1B, ATRABD2A, RAB D2A, RABD2A, T7I23.6, T7I23_6  gene ARA-5  function Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function GTP binding|GO:0005525||IEA  go_process ER to Golgi vesicle-mediated transport|GO:0006888|11090219|IDA  go_process ER to Golgi vesicle-mediated transport|GO:0006888|11090219|IMP  go_function GTP binding|GO:0005525||ISS  product ARA-5 (ARABIDOPSIS RAS 5); GTP binding  note ARABIDOPSIS RAS 5 (ARA-5); FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion, ER to Golgi vesicle-mediated transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRAB1A; GTP binding (TAIR:AT5G47200.1); Has 24211 Blast hits to 24160 proteins in 664 species: Archae - 21; Bacteria - 120; Metazoa - 13529; Fungi - 2916; Plants - 2286; Viruses - 19; Other Eukaryotes - 5320 (source: NCBI BLink).  protein_id AT1G02130.1p  transcript_id AT1G02130.1  protein_id AT1G02130.1p  transcript_id AT1G02130.1  
At1g02136	chr1:000402693	0.0	C/402693-402961	AT1G02136.1 pseudogenic_transcript  pseudo  function pseudogene of phagocytosis and cell motility protein  
At1g02140	chr1:000403467	0.0	C/403467-403526,403771-403947,404186-404401	AT1G02140.1 CDS  gene_syn HAP1, HAPLESS 1, MAGO, MAGO NASHI, MATERNAL EFFECT EMBRYO ARREST 63, MEE63, T7I23.7, T7I23_7  gene MAGO  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nucleus|GO:0005634||ISS  go_component nucleoplasm|GO:0005654|15496452|IDA  go_component nuclear speck|GO:0016607|16953428|IDA  go_component exon-exon junction complex|GO:0035145|16953428|IPI  go_process sex determination|GO:0007530||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process pollen tube guidance|GO:0010183|15514068|IMP  go_function protein binding|GO:0005515|16953428|IPI  product MAGO (MAGO NASHI); protein binding  note MAGO NASHI (MAGO); FUNCTIONS IN: protein binding; INVOLVED IN: embryonic development ending in seed dormancy, pollen tube guidance, sex determination; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mago nashi protein (InterPro:IPR004023); Has 348 Blast hits to 348 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 64; Plants - 47; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G02140.1p  transcript_id AT1G02140.1  protein_id AT1G02140.1p  transcript_id AT1G02140.1  
At1g02145	chr1:000404627	0.0	W/404627-404669,404757-404842,404912-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.3 CDS  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: mannosyltransferase, putative (TAIR:AT5G14850.2); Has 588 Blast hits to 578 proteins in 128 species: Archae - 0; Bacteria - 10; Metazoa - 273; Fungi - 191; Plants - 61; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G02145.3p  transcript_id AT1G02145.3  protein_id AT1G02145.3p  transcript_id AT1G02145.3  
At1g02145	chr1:000404627	0.0	W/404627-404669,404757-404842,404912-404953,405065-405110,405242-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: mannosyltransferase, putative (TAIR:AT5G14850.2); Has 589 Blast hits to 579 proteins in 128 species: Archae - 0; Bacteria - 10; Metazoa - 273; Fungi - 191; Plants - 61; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G02145.1p  transcript_id AT1G02145.1  protein_id AT1G02145.1p  transcript_id AT1G02145.1  
At1g02145	chr1:000404915	0.0	W/404915-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,406721-406792,406903-406989,407080-407147,407321-407389,407468-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.4 CDS  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: mannosyltransferase, putative (TAIR:AT5G14850.2); Has 587 Blast hits to 577 proteins in 128 species: Archae - 0; Bacteria - 10; Metazoa - 274; Fungi - 189; Plants - 61; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G02145.4p  transcript_id AT1G02145.4  protein_id AT1G02145.4p  transcript_id AT1G02145.4  
At1g02145	chr1:000404915	0.0	W/404915-404953,405065-405110,405230-405316,405430-405485,405648-405765,405893-405951,406061-406132,406247-406310,406415-406518,407535-407550,407722-407821,408073-408138,408236-408329,408408-408485	AT1G02145.2 CDS  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||IEA  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); Has 282 Blast hits to 244 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 129; Fungi - 86; Plants - 36; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G02145.2p  transcript_id AT1G02145.2  protein_id AT1G02145.2p  transcript_id AT1G02145.2  
At1g02150	chr1:000408779	0.0	W/408779-409138,409219-410433	AT1G02150.1 CDS  gene_syn T6A9.13  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02820.1); Has 5042 Blast hits to 2597 proteins in 108 species: Archae - 0; Bacteria - 2; Metazoa - 25; Fungi - 66; Plants - 4783; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G02150.1p  transcript_id AT1G02150.1  protein_id AT1G02150.1p  transcript_id AT1G02150.1  
At1g02160	chr1:000410803	0.0	W/410803-410893,411177-411253,411336-411383	AT1G02160.1 CDS  gene_syn T6A9.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); Has 45 Blast hits to 45 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 29; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02160.1p  transcript_id AT1G02160.1  protein_id AT1G02160.1p  transcript_id AT1G02160.1  
At1g02160	chr1:000410803	0.0	W/410803-410893,411177-411361	AT1G02160.2 CDS  gene_syn T6A9.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MTCP1 (InterPro:IPR009069), CHCH (InterPro:IPR010625); Has 27 Blast hits to 27 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 16; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02160.2p  transcript_id AT1G02160.2  protein_id AT1G02160.2p  transcript_id AT1G02160.2  
At1g02170	chr1:000411883	0.0	W/411883-412258,412460-412790,412883-413003,413080-413295,413367-413426	AT1G02170.1 CDS  gene_syn AMC1, ARABIDOPSIS THALIANA METACASPASE 1, ARABIDOPSIS THALIANA METACASPASE 1B, ATMC1, ATMCPB1, LOL3, LSD ONE LIKE 3, MCP1B, METACASPASE 1, T6A9.24  gene AMC1  function Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain  go_component chloroplast|GO:0009507||IEA  go_process proteolysis|GO:0006508||ISS  go_process induction of apoptosis|GO:0006917|15691845|IDA  go_function cysteine-type endopeptidase activity|GO:0004197|15691845|IDA  product AMC1 (METACASPASE 1); cysteine-type endopeptidase  note METACASPASE 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600), Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: AtMC2 (metacaspase 2); cysteine-type endopeptidase (TAIR:AT4G25110.1); Has 828 Blast hits to 807 proteins in 199 species: Archae - 2; Bacteria - 188; Metazoa - 3; Fungi - 193; Plants - 255; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT1G02170.1p  transcript_id AT1G02170.1  protein_id AT1G02170.1p  transcript_id AT1G02170.1  
At1g02180	chr1:000413619	0.0	C/413619-414217,414424-414505	AT1G02180.1 CDS  gene_syn T6A9.14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ferredoxin-related  note ferredoxin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02180.1p  transcript_id AT1G02180.1  protein_id AT1G02180.1p  transcript_id AT1G02180.1  
At1g02190	chr1:000415154	0.0	W/415154-415670,415742-415961,416045-416435,416731-416838,416962-417162,417248-417520,417623-417796	AT1G02190.1 CDS  gene_syn T6A9.15  go_component endoplasmic reticulum|GO:0005783||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function catalytic activity|GO:0003824||ISS  product CER1 protein, putative  note CER1 protein, putative; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: catalytic/ iron ion binding / oxidoreductase (TAIR:AT2G37700.1); Has 1933 Blast hits to 1933 proteins in 393 species: Archae - 0; Bacteria - 634; Metazoa - 240; Fungi - 255; Plants - 298; Viruses - 2; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT1G02190.1p  transcript_id AT1G02190.1  protein_id AT1G02190.1p  transcript_id AT1G02190.1  
At1g02190	chr1:000415154	0.0	W/415154-415670,415742-415961,416045-416435,416743-416838,416962-417162,417248-417520,417623-417796	AT1G02190.2 CDS  gene_syn T6A9.15  go_component endoplasmic reticulum|GO:0005783||IEA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function catalytic activity|GO:0003824||ISS  product CER1 protein, putative  note CER1 protein, putative; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: catalytic/ iron ion binding / oxidoreductase (TAIR:AT2G37700.1); Has 1933 Blast hits to 1933 proteins in 393 species: Archae - 0; Bacteria - 634; Metazoa - 240; Fungi - 255; Plants - 298; Viruses - 2; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT1G02190.2p  transcript_id AT1G02190.2  protein_id AT1G02190.2p  transcript_id AT1G02190.2  
At1g02205	chr1:000418818	0.0	W/418818-418877,418987-419210,419297-419529,419675-419894,420514-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.2 CDS  gene_syn AT1G02200, CER1, ECERIFERUM 1, POSSIBLE ALDEHYDE DECARBONYLASE, T6A9.16  gene CER1  function Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase.  go_component endoplasmic reticulum|GO:0005783||IEA  go_process wax biosynthetic process|GO:0010025|8718622|IMP  go_process wax biosynthetic process|GO:0010025||IMP  go_process cuticle development|GO:0042335|8718622|IMP  go_function octadecanal decarbonylase activity|GO:0009924|8718622|IMP  product CER1 (ECERIFERUM 1); octadecanal decarbonylase  note ECERIFERUM 1 (CER1); FUNCTIONS IN: octadecanal decarbonylase activity; INVOLVED IN: wax biosynthetic process, cuticle development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: CER1 protein, putative (TAIR:AT1G02190.1); Has 2025 Blast hits to 2023 proteins in 391 species: Archae - 0; Bacteria - 593; Metazoa - 230; Fungi - 260; Plants - 350; Viruses - 2; Other Eukaryotes - 590 (source: NCBI BLink).  protein_id AT1G02205.2p  transcript_id AT1G02205.2  protein_id AT1G02205.2p  transcript_id AT1G02205.2  
At1g02205	chr1:000419650	0.0	W/419650-419894,420514-420889,420984-421091,421191-421391,421526-421633,421735-421908,421981-422154	AT1G02205.1 CDS  gene_syn AT1G02200, CER1, ECERIFERUM 1, POSSIBLE ALDEHYDE DECARBONYLASE, T6A9.16  gene CER1  function Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase.  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_process wax biosynthetic process|GO:0010025|8718622|IMP  go_process wax biosynthetic process|GO:0010025||IMP  go_process cuticle development|GO:0042335|8718622|IMP  go_function octadecanal decarbonylase activity|GO:0009924|8718622|IMP  product CER1 (ECERIFERUM 1); octadecanal decarbonylase  note ECERIFERUM 1 (CER1); FUNCTIONS IN: octadecanal decarbonylase activity; INVOLVED IN: wax biosynthetic process, cuticle development; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: CER1 protein, putative (TAIR:AT1G02190.1); Has 226 Blast hits to 226 proteins in 34 species: Archae - 0; Bacteria - 30; Metazoa - 0; Fungi - 0; Plants - 185; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G02205.1p  transcript_id AT1G02205.1  protein_id AT1G02205.1p  transcript_id AT1G02205.1  
At1g02210	chr1:000427548	0.0	C/427548-427811	AT1G02210.1 CDS  gene_syn T6A9.33  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product regulator of shoot apical meristem-related  note regulator of shoot apical meristem-related; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC004 (Arabidopsis NAC domain containing protein 4); transcription factor (TAIR:AT1G02230.1); Has 256 Blast hits to 256 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 256; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02210.1p  transcript_id AT1G02210.1  protein_id AT1G02210.1p  transcript_id AT1G02210.1  
At1g02220	chr1:000428902	0.0	C/428902-429099,429248-429370,429462-429776,429851-429997,430069-430316,430414-430567	AT1G02220.1 CDS  gene_syn ANAC003, Arabidopsis NAC domain containing protein 3, T6A9.17  gene ANAC003  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC003 (Arabidopsis NAC domain containing protein 3); transcription factor  note Arabidopsis NAC domain containing protein 3 (ANAC003); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac048 (Arabidopsis NAC domain containing protein 48); transcription factor (TAIR:AT3G04420.1); Has 1364 Blast hits to 1360 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1362; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02220.1p  transcript_id AT1G02220.1  protein_id AT1G02220.1p  transcript_id AT1G02220.1  
At1g02228	chr1:000433031	0.0	C/433031-433819	AT1G02228.1 mRNA_TE_gene  pseudo  function pseudogene of no apical meristem (NAM) family protein  note Transposable element gene  
At1g02230	chr1:000435174	0.0	C/435174-435323,435450-435563,435650-435916,435997-436128,436277-436539,436622-436775	AT1G02230.1 CDS  gene_syn ANAC004, Arabidopsis NAC domain containing protein 4, T6A9.19  gene ANAC004  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC004 (Arabidopsis NAC domain containing protein 4); transcription factor  note Arabidopsis NAC domain containing protein 4 (ANAC004); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac005 (Arabidopsis NAC domain containing protein 5); transcription factor (TAIR:AT1G02250.1); Has 1464 Blast hits to 1455 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 1452; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G02230.1p  transcript_id AT1G02230.1  protein_id AT1G02230.1p  transcript_id AT1G02230.1  
At1g02250	chr1:000437951	0.0	C/437951-438106,438218-438334,438422-438679,438783-438887,439052-439314,439406-439559	AT1G02250.1 CDS  gene_syn Arabidopsis NAC domain containing protein 5, T6A9.20, anac005  gene anac005  go_process regulation of transcription|GO:0045449||IEA  go_component cellular_component|GO:0005575||ND  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product anac005 (Arabidopsis NAC domain containing protein 5); transcription factor  note Arabidopsis NAC domain containing protein 5 (anac005); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: xylem; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC004 (Arabidopsis NAC domain containing protein 4); transcription factor (TAIR:AT1G02230.1); Has 1424 Blast hits to 1418 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1424; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02250.1p  transcript_id AT1G02250.1  protein_id AT1G02250.1p  transcript_id AT1G02250.1  
At1g02260	chr1:000440757	0.0	C/440757-441013,441136-441325,441398-442459	AT1G02260.1 CDS  gene_syn T6A9.21  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process citrate transport|GO:0015746||IEA  go_function citrate transmembrane transporter activity|GO:0015137||IEA  go_component integral to membrane|GO:0016021||ISS  go_function transporter activity|GO:0005215||ISS  product transmembrane protein, putative  note transmembrane protein, putative; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 5612 Blast hits to 3945 proteins in 1017 species: Archae - 185; Bacteria - 4274; Metazoa - 237; Fungi - 56; Plants - 87; Viruses - 2; Other Eukaryotes - 771 (source: NCBI BLink).  protein_id AT1G02260.1p  transcript_id AT1G02260.1  protein_id AT1G02260.1p  transcript_id AT1G02260.1  
At1g02270	chr1:000443301	0.0	C/443301-443525,443629-443736,443979-444089,444258-444383,444489-444597,444683-444759,444846-445066,445454-445559,445648-445752,445844-445942,446030-446197	AT1G02270.1 CDS  gene_syn T6A9.35  go_component nucleus|GO:0005634|14617066|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process response to cold|GO:0009409|14617066|IEP  go_function catalytic activity|GO:0003824||ISS  go_function calcium ion binding|GO:0005509||ISS  product endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein  note endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein; FUNCTIONS IN: catalytic activity, calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT5G54130.2); Has 335 Blast hits to 335 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 41; Plants - 110; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G02270.1p  transcript_id AT1G02270.1  protein_id AT1G02270.1p  transcript_id AT1G02270.1  
At1g02280	chr1:000448665	0.0	C/448665-448733,448812-448973,449055-449123,449225-449489,449714-449838,449939-450046,450151-450246	AT1G02280.1 CDS  gene_syn ATTOC33, PLASTID PROTEIN IMPORT 1, PPI1, T6A9.32, TOC33, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33  gene TOC33  function Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast outer membrane|GO:0009707|10998188|IDA  go_process protein targeting to chloroplast|GO:0045036|9756470|TAS  go_function GTPase activity|GO:0003924|12782294|IDA  go_function protein binding|GO:0005515|15773849|IPI  go_function GTP binding|GO:0005525|12782294|IDA  go_function GTP binding|GO:0005525||ISS  product TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33); GTP binding / GTPase/ protein binding  note TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33 (TOC33); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34); GTP binding (TAIR:AT5G05000.3); Has 709 Blast hits to 702 proteins in 147 species: Archae - 0; Bacteria - 221; Metazoa - 232; Fungi - 11; Plants - 199; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G02280.1p  transcript_id AT1G02280.1  protein_id AT1G02280.1p  transcript_id AT1G02280.1  
At1g02280	chr1:000448665	0.0	C/448665-448733,448812-448973,449055-449123,449225-449489,449714-449838,449939-450046,450151-450246	AT1G02280.2 CDS  gene_syn ATTOC33, PLASTID PROTEIN IMPORT 1, PPI1, T6A9.32, TOC33, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33  gene TOC33  function Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast outer membrane|GO:0009707|10998188|IDA  go_process protein targeting to chloroplast|GO:0045036|9756470|TAS  go_function GTPase activity|GO:0003924|12782294|IDA  go_function protein binding|GO:0005515|15773849|IPI  go_function GTP binding|GO:0005525|12782294|IDA  go_function GTP binding|GO:0005525||ISS  product TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33); GTP binding / GTPase/ protein binding  note TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33 (TOC33); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast outer membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34); GTP binding (TAIR:AT5G05000.3); Has 709 Blast hits to 702 proteins in 147 species: Archae - 0; Bacteria - 221; Metazoa - 232; Fungi - 11; Plants - 199; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G02280.2p  transcript_id AT1G02280.2  protein_id AT1G02280.2p  transcript_id AT1G02280.2  
At1g02290	chr1:000450646	0.0	C/450646-451977	AT1G02290.1 CDS  gene_syn T6A9.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45830.1); Has 80 Blast hits to 80 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G02290.1p  transcript_id AT1G02290.1  protein_id AT1G02290.1p  transcript_id AT1G02290.1  
At1g02300	chr1:000453288	0.0	W/453288-453365,453594-453647,453730-453810,453907-454063,454197-454336,454415-454540,454622-454840,454927-455040,455112-455147,455242-455376	AT1G02300.1 CDS  gene_syn T6A9.28, T7I23.12, T7I23_12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process regulation of catalytic activity|GO:0050790||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cathepsin B-like cysteine protease, putative  note cathepsin B-like cysteine protease, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: cathepsin B-like cysteine protease, putative (TAIR:AT1G02305.1); Has 5732 Blast hits to 5708 proteins in 562 species: Archae - 31; Bacteria - 63; Metazoa - 2761; Fungi - 4; Plants - 1031; Viruses - 129; Other Eukaryotes - 1713 (source: NCBI BLink).  protein_id AT1G02300.1p  transcript_id AT1G02300.1  protein_id AT1G02300.1p  transcript_id AT1G02300.1  
At1g02305	chr1:000455816	0.0	W/455816-455902,456178-456231,456314-456394,456490-456646,456757-456761,456843-456917,457010-457135,457211-457429,457514-457627,457716-457751,457840-457974	AT1G02305.1 CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_process regulation of catalytic activity|GO:0050790||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cathepsin B-like cysteine protease, putative  note cathepsin B-like cysteine protease, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: cathepsin B-like cysteine protease, putative (TAIR:AT1G02300.1); Has 5940 Blast hits to 5910 proteins in 586 species: Archae - 35; Bacteria - 87; Metazoa - 2802; Fungi - 4; Plants - 1108; Viruses - 129; Other Eukaryotes - 1775 (source: NCBI BLink).  protein_id AT1G02305.1p  transcript_id AT1G02305.1  protein_id AT1G02305.1p  transcript_id AT1G02305.1  
At1g02310	chr1:000458243	0.0	C/458243-458636,458732-458940,459021-459143,459503-459682,460323-460652	AT1G02310.1 CDS  gene_syn T6A9.1, T6A9_1  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative  note glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, family 5, conserved site (InterPro:IPR018087), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: (1-4)-beta-mannan endohydrolase, putative (TAIR:AT5G66460.1); Has 452 Blast hits to 448 proteins in 121 species: Archae - 4; Bacteria - 114; Metazoa - 4; Fungi - 121; Plants - 186; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G02310.1p  transcript_id AT1G02310.1  protein_id AT1G02310.1p  transcript_id AT1G02310.1  
At1g02320	chr1:000461828	0.0	W/461828-461974	AT1G02320.1 CDS  gene_syn T6A9.30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G02320.1p  transcript_id AT1G02320.1  protein_id AT1G02320.1p  transcript_id AT1G02320.1  
At1g02330	chr1:000462202	0.0	C/462202-462383,462475-462632,462727-462800,462876-462999,463123-463323,463421-463521	AT1G02330.1 CDS  gene_syn T6A9.2, T6A9_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1111 Blast hits to 862 proteins in 155 species: Archae - 2; Bacteria - 54; Metazoa - 381; Fungi - 93; Plants - 45; Viruses - 5; Other Eukaryotes - 531 (source: NCBI BLink).  protein_id AT1G02330.1p  transcript_id AT1G02330.1  protein_id AT1G02330.1p  transcript_id AT1G02330.1  
At1g02335	chr1:000463979	0.0	C/463979-464523,464762-464876	AT1G02335.1 CDS  gene_syn GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR., GL22, T6A9.3  gene GL22  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  product GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR. (GL22); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / nutrient reservoir (TAIR:AT3G62020.1); Has 1351 Blast hits to 1293 proteins in 225 species: Archae - 0; Bacteria - 312; Metazoa - 0; Fungi - 63; Plants - 945; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G02335.1p  transcript_id AT1G02335.1  protein_id AT1G02335.1p  transcript_id AT1G02335.1  
At1g02340	chr1:000465933	0.0	C/465933-466247,466732-466797,466958-467086,467186-467552,467684-467685	AT1G02340.1 CDS  gene_syn FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REDUCED PHYTOCHROME SIGNALING 1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1, REP1, RSF1, T6A9.4, T6A9_4  gene HFR1  function Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.  go_component nucleus|GO:0005634|10995393|TAS  go_component nucleus|GO:0005634|15705947|IDA  go_process protein polyubiquitination|GO:0000209|15705947|IDA  go_process signal transduction|GO:0007165|10995393|TAS  go_process red, far-red light phototransduction|GO:0009585|12061902|TAS  go_process response to light intensity|GO:0009642|15705947|IEP  go_process blue light signaling pathway|GO:0009785|15705947|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function protein binding|GO:0005515|15705947|IPI  go_function protein binding|GO:0005515|15960622|IPI  product HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / protein binding / transcription factor  note LONG HYPOCOTYL IN FAR-RED (HFR1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: signal transduction, red, far-red light phototransduction, response to light intensity, protein polyubiquitination, blue light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator (TAIR:AT1G09530.2); Has 970 Blast hits to 970 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 963; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02340.1p  transcript_id AT1G02340.1  protein_id AT1G02340.1p  transcript_id AT1G02340.1  
At1g02350	chr1:000469818	0.0	W/469818-469971,470252-470288,470371-470482,470574-470693	AT1G02350.1 CDS  gene_syn T6A9.34  go_process siroheme biosynthetic process|GO:0019354||IEA  go_function molecular_function|GO:0003674||ND  product protoporphyrinogen oxidase-related  note protoporphyrinogen oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: siroheme biosynthetic process; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G02350.1p  transcript_id AT1G02350.1  protein_id AT1G02350.1p  transcript_id AT1G02350.1  
At1g02360	chr1:000472138	0.0	C/472138-472507,472668-473116	AT1G02360.1 CDS  gene_syn T6A9.5, T6A9_5  go_component endomembrane system|GO:0012505||IEA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function chitinase activity|GO:0004568||IEA  go_function chitinase activity|GO:0004568||ISS  product chitinase, putative  note chitinase, putative; FUNCTIONS IN: chitinase activity; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, cotyledon, root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase, putative (TAIR:AT4G01700.1); Has 1395 Blast hits to 1389 proteins in 323 species: Archae - 0; Bacteria - 316; Metazoa - 35; Fungi - 2; Plants - 988; Viruses - 2; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G02360.1p  transcript_id AT1G02360.1  protein_id AT1G02360.1p  transcript_id AT1G02360.1  
At1g02370	chr1:000474516	0.0	W/474516-474887,475142-476383	AT1G02370.1 CDS  gene_syn T6A9.6, T6A9_6  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G01990.1); Has 3083 Blast hits to 1840 proteins in 75 species: Archae - 0; Bacteria - 2; Metazoa - 43; Fungi - 27; Plants - 2899; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G02370.1p  transcript_id AT1G02370.1  protein_id AT1G02370.1p  transcript_id AT1G02370.1  
At1g02380	chr1:000477814	0.0	W/477814-478443	AT1G02380.1 CDS  gene_syn T6A9.7, T6A9_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 31 Blast hits to 31 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02380.1p  transcript_id AT1G02380.1  protein_id AT1G02380.1p  transcript_id AT1G02380.1  
At1g02390	chr1:000480921	0.0	W/480921-481619,482270-483163	AT1G02390.1 CDS  gene_syn ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, ATGPAT2, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, GPAT2, T6A9.8, T6A9_8  gene GPAT2  function Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.  go_process metabolic process|GO:0008152||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_process metabolic process|GO:0008152||ISS  go_function acyltransferase activity|GO:0008415||ISS  product GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2); acyltransferase  note GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2 (GPAT2); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3); acyltransferase (TAIR:AT4G01950.1); Has 185 Blast hits to 181 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02390.1p  transcript_id AT1G02390.1  protein_id AT1G02390.1p  transcript_id AT1G02390.1  
At1g02391	chr1:000483764	0.0	C/483764-483919	AT1G02391.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G02391.1p  transcript_id AT1G02391.1  protein_id AT1G02391.1p  transcript_id AT1G02391.1  
At1g02400	chr1:000486964	0.0	W/486964-487364,488720-489062,489146-489391	AT1G02400.1 CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, ATGA2OX4, ATGA2OX6, DOWNSTREAM TARGET OF AGL15 1, DTA1, GA2OX6, GIBBERELLIN 2-OXIDASE 6, T6A9.9, T6A9_9  gene GA2OX6  function Encodes a gibberellin 2-oxidase.  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process gibberellin catabolic process|GO:0045487|18805991|IDA  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|18805991|IDA  product GA2OX6 (GIBBERELLIN 2-OXIDASE 6); gibberellin 2-beta-dioxygenase  note GIBBERELLIN 2-OXIDASE 6 (GA2OX6); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; INVOLVED IN: response to red or far red light, gibberellin catabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4); gibberellin 2-beta-dioxygenase (TAIR:AT1G47990.1); Has 5629 Blast hits to 5612 proteins in 663 species: Archae - 0; Bacteria - 697; Metazoa - 72; Fungi - 544; Plants - 2992; Viruses - 0; Other Eukaryotes - 1324 (source: NCBI BLink).  protein_id AT1G02400.1p  transcript_id AT1G02400.1  protein_id AT1G02400.1p  transcript_id AT1G02400.1  
At1g02405	chr1:000490093	0.0	C/490093-490497	AT1G02405.1 CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G70990.1); Has 43114 Blast hits to 16780 proteins in 897 species: Archae - 84; Bacteria - 5479; Metazoa - 15161; Fungi - 3897; Plants - 10314; Viruses - 1979; Other Eukaryotes - 6200 (source: NCBI BLink).  protein_id AT1G02405.1p  transcript_id AT1G02405.1  protein_id AT1G02405.1p  transcript_id AT1G02405.1  
At1g02410	chr1:000491300	0.0	W/491300-491379,491488-491803,491907-491959,492086-492158,492248-492352,492443-492523,492607-492762	AT1G02410.1 CDS  gene_syn T6A9.10, T6A9_10  go_function copper ion binding|GO:0005507||IEA  go_process biological_process|GO:0008150||ND  product cytochrome c oxidase assembly protein CtaG / Cox11 family  note cytochrome c oxidase assembly protein CtaG / Cox11 family; FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533); Has 2371 Blast hits to 2371 proteins in 476 species: Archae - 0; Bacteria - 724; Metazoa - 77; Fungi - 85; Plants - 18; Viruses - 0; Other Eukaryotes - 1467 (source: NCBI BLink).  protein_id AT1G02410.1p  transcript_id AT1G02410.1  protein_id AT1G02410.1p  transcript_id AT1G02410.1  
At1g02420	chr1:000493683	0.0	W/493683-495158	AT1G02420.1 CDS  gene_syn T6A9.11, T6A9_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G61360.1); Has 14891 Blast hits to 5055 proteins in 157 species: Archae - 4; Bacteria - 12; Metazoa - 333; Fungi - 224; Plants - 13695; Viruses - 0; Other Eukaryotes - 623 (source: NCBI BLink).  protein_id AT1G02420.1p  transcript_id AT1G02420.1  protein_id AT1G02420.1p  transcript_id AT1G02420.1  
At1g02430	chr1:000495175	0.0	C/495175-495259,495350-495489,495563-495682,495757-495833,495912-496062	AT1G02430.1 CDS  gene_syn ADP-ribosylation factor D1B, ATARFD1B, T6A9.12, T6A9_12  gene ATARFD1B  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.  go_component intracellular|GO:0005622||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARFD1B (ADP-ribosylation factor D1B); GTP binding  note ADP-ribosylation factor D1B (ATARFD1B); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Ras GTPase (InterPro:IPR001806), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFD1A (ADP-ribosylation factor D1A); GTP binding (TAIR:AT1G02440.1); Has 6798 Blast hits to 6794 proteins in 312 species: Archae - 4; Bacteria - 5; Metazoa - 3121; Fungi - 943; Plants - 1175; Viruses - 3; Other Eukaryotes - 1547 (source: NCBI BLink).  protein_id AT1G02430.1p  transcript_id AT1G02430.1  protein_id AT1G02430.1p  transcript_id AT1G02430.1  
At1g02440	chr1:000496586	0.0	C/496586-496670,496760-496899,496972-497091,497165-497241,497329-497479	AT1G02440.1 CDS  gene_syn ADP-ribosylation factor D1A, ATARFD1A, T6A9.25  gene ATARFD1A  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.  go_component intracellular|GO:0005622||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function GTP binding|GO:0005525|12644670|ISS  product ATARFD1A (ADP-ribosylation factor D1A); GTP binding  note ADP-ribosylation factor D1A (ATARFD1A); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Ras GTPase (InterPro:IPR001806), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATARFD1B (ADP-ribosylation factor D1B); GTP binding (TAIR:AT1G02430.1); Has 6146 Blast hits to 6143 proteins in 309 species: Archae - 4; Bacteria - 15; Metazoa - 2918; Fungi - 855; Plants - 1046; Viruses - 3; Other Eukaryotes - 1305 (source: NCBI BLink).  protein_id AT1G02440.1p  transcript_id AT1G02440.1  protein_id AT1G02440.1p  transcript_id AT1G02440.1  
At1g02450	chr1:000498052	0.0	C/498052-498480	AT1G02450.1 CDS  gene_syn NIM1-INTERACTING 1, NIMIN-1, NIMIN1, T6A9.23  gene NIMIN1  function NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of systemic acquired resistance|GO:0010112|15749762|IMP  go_process negative regulation of transcription|GO:0016481|15749762|IMP  go_process defense response to bacterium|GO:0042742|15749762|IMP  go_function protein binding|GO:0005515|15749762|IPI  product NIMIN1 (NIM1-INTERACTING 1); protein binding  note NIM1-INTERACTING 1 (NIMIN1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of systemic acquired resistance, defense response to bacterium, negative regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 2; Plants - 14; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G02450.1p  transcript_id AT1G02450.1  protein_id AT1G02450.1p  transcript_id AT1G02450.1  
At1g02460	chr1:000504897	0.0	C/504897-505407,505499-505583,505845-506052,506137-506184,506367-506534,506644-507099	AT1G02460.1 CDS  gene_syn T6A9.22  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, root, seed, stamen; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT4G01890.1); Has 3418 Blast hits to 3150 proteins in 416 species: Archae - 2; Bacteria - 630; Metazoa - 242; Fungi - 1051; Plants - 1139; Viruses - 100; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G02460.1p  transcript_id AT1G02460.1  protein_id AT1G02460.1p  transcript_id AT1G02460.1  
At1g02470	chr1:000511916	0.0	C/511916-511990,512074-512121,512214-512262,512378-512430,512525-512620,513147-513246,513332-513573	AT1G02470.1 CDS  gene_syn T6A9.26  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 276 Blast hits to 276 proteins in 86 species: Archae - 0; Bacteria - 162; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT1G02470.1p  transcript_id AT1G02470.1  protein_id AT1G02470.1p  transcript_id AT1G02470.1  
At1g02470	chr1:000511916	0.0	C/511916-511990,512074-512121,512214-512262,512378-512430,512525-512620,513147-513249,513332-513573	AT1G02470.2 CDS  gene_syn T6A9.26  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 273 Blast hits to 273 proteins in 85 species: Archae - 0; Bacteria - 160; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G02470.2p  transcript_id AT1G02470.2  protein_id AT1G02470.2p  transcript_id AT1G02470.2  
At1g02475	chr1:000514110	0.0	C/514110-514184,514271-514318,514422-514470,514553-514605,514705-514800,514892-514991,515093-515331	AT1G02475.1 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01883.1); Has 350 Blast hits to 350 proteins in 105 species: Archae - 0; Bacteria - 211; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G02475.1p  transcript_id AT1G02475.1  protein_id AT1G02475.1p  transcript_id AT1G02475.1  
At1g02480	chr1:000515494	0.0	W/515494-515566	AT1G02480.1 tRNA  gene_syn 51953.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT1G02480.1  
At1g02490	chr1:000516618	0.0	W/516618-516734	AT1G02490.1 CDS  gene_syn T14P4.35, T14P4_35  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G02490.1p  transcript_id AT1G02490.1  protein_id AT1G02490.1p  transcript_id AT1G02490.1  
At1g02500	chr1:000519037	0.0	W/519037-520218	AT1G02500.1 CDS  gene_syn MAT1, S-ADENOSYLMETHIONINE SYNTHETASE 1, S-ADENOSYLMETHIONINE SYNTHETASE-1, SAM-1, SAM1  gene SAM1  function encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_process ethylene biosynthetic process|GO:0009693|2535470|TAS  go_function methionine adenosyltransferase activity|GO:0004478|16365035|IDA  go_function methionine adenosyltransferase activity|GO:0004478||ISS  product SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase  note S-ADENOSYLMETHIONINE SYNTHETASE 1 (SAM1); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ethylene biosynthetic process, S-adenosylmethionine biosynthetic process; LOCATED IN: cell wall, plasma membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); methionine adenosyltransferase (TAIR:AT4G01850.2); Has 8015 Blast hits to 8014 proteins in 1637 species: Archae - 6; Bacteria - 2990; Metazoa - 309; Fungi - 109; Plants - 502; Viruses - 0; Other Eukaryotes - 4099 (source: NCBI BLink).  protein_id AT1G02500.1p  transcript_id AT1G02500.1  protein_id AT1G02500.1p  transcript_id AT1G02500.1  
At1g02500	chr1:000519037	0.0	W/519037-520218	AT1G02500.2 CDS  gene_syn MAT1, S-ADENOSYLMETHIONINE SYNTHETASE 1, S-ADENOSYLMETHIONINE SYNTHETASE-1, SAM-1, SAM1  gene SAM1  function encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process S-adenosylmethionine biosynthetic process|GO:0006556||ISS  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_process ethylene biosynthetic process|GO:0009693|2535470|TAS  go_function methionine adenosyltransferase activity|GO:0004478|16365035|IDA  go_function methionine adenosyltransferase activity|GO:0004478||ISS  product SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1); methionine adenosyltransferase  note S-ADENOSYLMETHIONINE SYNTHETASE 1 (SAM1); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ethylene biosynthetic process, S-adenosylmethionine biosynthetic process; LOCATED IN: cell wall, plasma membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133); BEST Arabidopsis thaliana protein match is: SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2); methionine adenosyltransferase (TAIR:AT4G01850.2); Has 8015 Blast hits to 8014 proteins in 1637 species: Archae - 6; Bacteria - 2990; Metazoa - 309; Fungi - 109; Plants - 502; Viruses - 0; Other Eukaryotes - 4099 (source: NCBI BLink).  protein_id AT1G02500.2p  transcript_id AT1G02500.2  protein_id AT1G02500.2p  transcript_id AT1G02500.2  
At1g02510	chr1:000520687	0.0	C/520687-520804,520890-521626	AT1G02510.1 CDS  gene_syn ATKCO4, ATTPK4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, KCO4, T14P4.16, T14P4_16, TPK4  gene TPK4  function Encodes AtTPK4, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK4 is targeted to the plasma membrane. In contrast other members of the AtTPK proteins are located in tonoplast. AtTPK4 forms a voltage-independent K+ channel that is blocked by extracellular calcium ions. May form homomeric ion channels in vivo.  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_function outward rectifier potassium channel activity|GO:0015271||ISS  product TPK4; outward rectifier potassium channel  note TPK4; FUNCTIONS IN: outward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5); outward rectifier potassium channel (TAIR:AT4G01840.1); Has 3679 Blast hits to 3531 proteins in 680 species: Archae - 100; Bacteria - 1139; Metazoa - 1357; Fungi - 117; Plants - 118; Viruses - 19; Other Eukaryotes - 829 (source: NCBI BLink).  protein_id AT1G02510.1p  transcript_id AT1G02510.1  protein_id AT1G02510.1p  transcript_id AT1G02510.1  
At1g02520	chr1:000524134	0.0	W/524134-524436,524521-524575,524662-524837,524917-525138,525224-525462,525546-527202,527311-527577,527658-527921,528010-528309,528392-528745	AT1G02520.1 CDS  gene_syn P-GLYCOPROTEIN 11, PGP11, T14P4.15, T14P4_15  gene PGP11  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 11 (PGP11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP12 (P-GLYCOPROTEIN 12); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G02530.1); Has 498537 Blast hits to 232899 proteins in 2673 species: Archae - 8833; Bacteria - 334202; Metazoa - 15781; Fungi - 8550; Plants - 4753; Viruses - 34; Other Eukaryotes - 126384 (source: NCBI BLink).  protein_id AT1G02520.1p  transcript_id AT1G02520.1  protein_id AT1G02520.1p  transcript_id AT1G02520.1  
At1g02530	chr1:000529836	0.0	W/529836-530099,530182-530236,530403-530578,530681-530902,530980-531218,531325-533005,533079-533345,533453-533716,533808-534107,534189-534542	AT1G02530.1 CDS  gene_syn P-GLYCOPROTEIN 12, PGP12, T14P4.14, T14P4_14  gene PGP12  go_component integral to membrane|GO:0016021||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP12 (P-GLYCOPROTEIN 12); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 12 (PGP12); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G02520.1); Has 498500 Blast hits to 233438 proteins in 2643 species: Archae - 8817; Bacteria - 333877; Metazoa - 16004; Fungi - 8522; Plants - 4762; Viruses - 34; Other Eukaryotes - 126484 (source: NCBI BLink).  protein_id AT1G02530.1p  transcript_id AT1G02530.1  protein_id AT1G02530.1p  transcript_id AT1G02530.1  
At1g02540	chr1:000534827	0.0	C/534827-535699	AT1G02540.1 CDS  gene_syn T14P4.13, T14P4_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3646 Blast hits to 2149 proteins in 221 species: Archae - 14; Bacteria - 166; Metazoa - 1219; Fungi - 244; Plants - 71; Viruses - 209; Other Eukaryotes - 1723 (source: NCBI BLink).  protein_id AT1G02540.1p  transcript_id AT1G02540.1  protein_id AT1G02540.1p  transcript_id AT1G02540.1  
At1g02550	chr1:000536483	0.0	W/536483-537211	AT1G02550.1 CDS  gene_syn T14P4.25, T14P4_25  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT2G47340.1); Has 106 Blast hits to 101 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02550.1p  transcript_id AT1G02550.1  protein_id AT1G02550.1p  transcript_id AT1G02550.1  
At1g02560	chr1:000538000	0.0	W/538000-538130,538209-538328,538419-538533,538627-538719,538808-538853,538936-539008,539255-539289,539391-539479,539611-539805	AT1G02560.1 CDS  gene_syn CLP PROTEASE 1 PROTEOLYTIC SUBUNIT, CLPP5, NCLPP1, NCLPP5, NUCLEAR CLPP 5, NUCLEAR ENCODED CLP PROTEASE 5, NUCLEAR-ENCODED CLPP 1, T14P4.12, T14P4_12  gene CLPP5  function One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast thylakoid|GO:0009534|11278690|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  product CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase  note NUCLEAR ENCODED CLP PROTEASE 5 (CLPP5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPP3; serine-type endopeptidase (TAIR:AT1G66670.1); Has 9098 Blast hits to 9096 proteins in 1699 species: Archae - 2; Bacteria - 4626; Metazoa - 115; Fungi - 50; Plants - 688; Viruses - 75; Other Eukaryotes - 3542 (source: NCBI BLink).  protein_id AT1G02560.1p  transcript_id AT1G02560.1  protein_id AT1G02560.1p  transcript_id AT1G02560.1  
At1g02570	chr1:000541380	0.0	W/541380-541792,541856-542093,543339-543983	AT1G02570.1 CDS  gene_syn T14P4.23, T14P4_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, sperm cell, leaf whorl, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47360.1); Has 10 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02570.1p  transcript_id AT1G02570.1  protein_id AT1G02570.1p  transcript_id AT1G02570.1  
At1g02580	chr1:000544796	0.0	W/544796-544804,544973-545062,545632-545963,546062-546235,546313-546400,546512-546637,546727-546774,546871-546939,547024-547172,547248-547374,547463-547671,547748-547879,547970-548051,548134-548181,548311-548439,548525-548602,548815-548994	AT1G02580.1 CDS  gene_syn EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5, T14P4.11, T14P4_11  gene MEA  function Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization  go_component nucleus|GO:0005634|10962025|IDA  go_process response to absence of light|GO:0009646|12376626|IEP  go_process endosperm development|GO:0009960||NAS  go_process negative regulation of transcription|GO:0016481|16651654|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function sequence-specific DNA binding|GO:0043565|16651654|IDA  product MEA (MEDEA); sequence-specific DNA binding / transcription factor  note MEDEA (MEA); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding; INVOLVED IN: negative regulation of transcription, response to absence of light, endosperm development; LOCATED IN: nucleus; EXPRESSED IN: ovule, female gametophyte; EXPRESSED DURING: megagametophyte developmental stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET (InterPro:IPR001214), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: SWN (SWINGER); transcription factor (TAIR:AT4G02020.1); Has 3734 Blast hits to 3651 proteins in 341 species: Archae - 0; Bacteria - 294; Metazoa - 1636; Fungi - 324; Plants - 562; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT1G02580.1p  transcript_id AT1G02580.1  protein_id AT1G02580.1p  transcript_id AT1G02580.1  
At1g02590	chr1:000552138	0.0	C/552138-552182,552275-552373,552456-552506,552687-552761	AT1G02590.1 CDS  gene_syn T14P4.22, T14P4_22  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function aldehyde oxidase activity|GO:0004031||ISS  product aldehyde oxidase, putative  note aldehyde oxidase, putative; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, aldehyde oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4); aldehyde oxidase/ aryl-aldehyde oxidase (TAIR:AT1G04580.1); Has 1500 Blast hits to 1498 proteins in 348 species: Archae - 0; Bacteria - 421; Metazoa - 494; Fungi - 54; Plants - 97; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).  protein_id AT1G02590.1p  transcript_id AT1G02590.1  protein_id AT1G02590.1p  transcript_id AT1G02590.1  
At1g02600	chr1:000552640	0.0	W/552640-552711	AT1G02600.1 tRNA  gene_syn 51953.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT1G02600.1  
At1g02610	chr1:000553181	0.0	C/553181-553261,553395-553475,553600-553677,555572-555643,555726-555854	AT1G02610.1 CDS  gene_syn T14P4.10, T14P4_10  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: PIT1 (pitchoun 1); protein binding / zinc ion binding (TAIR:AT4G02075.1); Has 1164 Blast hits to 1147 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 636; Fungi - 68; Plants - 329; Viruses - 16; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G02610.1p  transcript_id AT1G02610.1  protein_id AT1G02610.1p  transcript_id AT1G02610.1  
At1g02620	chr1:000557092	0.0	W/557092-557108,557317-557668	AT1G02620.1 CDS  gene_syn T14P4.21, T14P4_21  go_component intracellular|GO:0005622||IEA  go_component endomembrane system|GO:0012505||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function GTP binding|GO:0005525||IEA  product GTP-binding protein (SAR1A)  note GTP-binding protein (SAR1A); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, intracellular; CONTAINS InterPro DOMAIN/s: GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2); GTP binding (TAIR:AT4G02080.1); Has 3545 Blast hits to 3545 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 1848; Fungi - 503; Plants - 612; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink).  protein_id AT1G02620.1p  transcript_id AT1G02620.1  protein_id AT1G02620.1p  transcript_id AT1G02620.1  
At1g02630	chr1:000561007	0.0	C/561007-561320,561453-561695,561902-562382	AT1G02630.2 CDS  gene_syn T14P4.9, T14P4_9  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  product equilibrative nucleoside transporter, putative (ENT8)  note equilibrative nucleoside transporter, putative (ENT8); FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1); nucleoside transmembrane transporter/ nucleoside transmembrane transporter, against a concentration gradient (TAIR:AT1G70330.1); Has 997 Blast hits to 684 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 670; Fungi - 64; Plants - 126; Viruses - 3; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G02630.2p  transcript_id AT1G02630.2  protein_id AT1G02630.2p  transcript_id AT1G02630.2  
At1g02630	chr1:000561007	0.0	C/561007-561695,561902-562382	AT1G02630.1 CDS  gene_syn T14P4.9, T14P4_9  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  product equilibrative nucleoside transporter, putative (ENT8)  note equilibrative nucleoside transporter, putative (ENT8); FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1); nucleoside transmembrane transporter/ nucleoside transmembrane transporter, against a concentration gradient (TAIR:AT1G70330.1); Has 882 Blast hits to 771 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 483; Fungi - 75; Plants - 90; Viruses - 3; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G02630.1p  transcript_id AT1G02630.1  protein_id AT1G02630.1p  transcript_id AT1G02630.1  
At1g02640	chr1:000564293	0.0	W/564293-564697,565433-565711,565784-565953,566043-566140,566226-567580	AT1G02640.1 CDS  gene_syn ATBXL2, BETA-XYLOSIDASE 2, BXL2, T14P4.8, T14P4_8  gene BXL2  function encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds  note BETA-XYLOSIDASE 2 (BXL2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G49360.1); Has 5305 Blast hits to 4699 proteins in 682 species: Archae - 16; Bacteria - 2573; Metazoa - 10; Fungi - 930; Plants - 294; Viruses - 0; Other Eukaryotes - 1482 (source: NCBI BLink).  protein_id AT1G02640.1p  transcript_id AT1G02640.1  protein_id AT1G02640.1p  transcript_id AT1G02640.1  
At1g02650	chr1:000568704	0.0	W/568704-568739,568832-569223,569305-570418	AT1G02650.1 CDS  gene_syn T14P4.7, T14P4_7  go_function binding|GO:0005488||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT4G02100.1); Has 132 Blast hits to 130 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 39; Fungi - 10; Plants - 74; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G02650.1p  transcript_id AT1G02650.1  protein_id AT1G02650.1p  transcript_id AT1G02650.1  
At1g02660	chr1:000572187	0.0	C/572187-572759,572836-573252,573338-573397,573489-573953,574120-574746	AT1G02660.1 CDS  gene_syn T14P4.6, T14P4_6  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT3G62590.1); Has 601 Blast hits to 595 proteins in 116 species: Archae - 0; Bacteria - 17; Metazoa - 188; Fungi - 136; Plants - 92; Viruses - 14; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G02660.1p  transcript_id AT1G02660.1  protein_id AT1G02660.1p  transcript_id AT1G02660.1  
At1g02670	chr1:000576046	0.0	W/576046-576145,576548-576613,576850-576912,576994-577592,577784-577941,577979-578079,578181-578244,578546-578620,578722-578791,578895-579017,579196-579312,579421-579525,579647-579799,579879-579967,580050-580130,580227-580299	AT1G02670.1 CDS  gene_syn T14P4.5, T14P4_5  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product DNA repair protein, putative  note DNA repair protein, putative; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (TAIR:AT1G05120.1); Has 13806 Blast hits to 10105 proteins in 994 species: Archae - 90; Bacteria - 3389; Metazoa - 3316; Fungi - 3044; Plants - 952; Viruses - 105; Other Eukaryotes - 2910 (source: NCBI BLink).  protein_id AT1G02670.1p  transcript_id AT1G02670.1  protein_id AT1G02670.1p  transcript_id AT1G02670.1  
At1g02680	chr1:000581084	0.0	W/581084-581186,581278-581315,581497-581556,581644-581718,581815-581919	AT1G02680.1 CDS  gene_syn T14P4.32, T14P4_32, TAF13, TBP-ASSOCIATED FACTOR 13  gene TAF13  go_component transcription factor complex|GO:0005667||IEA  go_process transcription from RNA polymerase II promoter|GO:0006366||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_component transcription factor complex|GO:0005667||ISS  go_process transcription initiation|GO:0006352||ISS  go_function RNA polymerase II transcription factor activity|GO:0003702||ISS  product TAF13 (TBP-ASSOCIATED FACTOR 13); DNA binding / RNA polymerase II transcription factor  note TBP-ASSOCIATED FACTOR 13 (TAF13); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding; INVOLVED IN: transcription initiation, transcription from RNA polymerase II promoter; LOCATED IN: transcription factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IID, 18 kDa subunit (InterPro:IPR003195), Histone-fold (InterPro:IPR009072); Has 401 Blast hits to 401 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 191; Plants - 19; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G02680.1p  transcript_id AT1G02680.1  protein_id AT1G02680.1p  transcript_id AT1G02680.1  
At1g02681	chr1:000582413	0.0	W/582413-582922	AT1G02681.1 pseudogenic_transcript  pseudo  function Pseudogene of AT4G02160  
At1g02690	chr1:000584397	0.0	W/584397-584618,584860-584956,585053-585144,585237-585368,585500-585685,585776-585942,586023-586101,586192-586320,586439-586566,586649-587036	AT1G02690.2 CDS  gene_syn IMPA-6, IMPORTIN ALPHA ISOFORM 6, T14P4.3, T14P4_3  gene IMPA-6  function Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus|GO:0006606||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-6 (IMPORTIN ALPHA ISOFORM 6); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 6 (IMPA-6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: MOS6 (MODIFIER OF SNC1, 6); binding / protein transporter (TAIR:AT4G02150.1); Has 3205 Blast hits to 2358 proteins in 229 species: Archae - 4; Bacteria - 31; Metazoa - 1609; Fungi - 356; Plants - 669; Viruses - 0; Other Eukaryotes - 536 (source: NCBI BLink).  protein_id AT1G02690.2p  transcript_id AT1G02690.2  protein_id AT1G02690.2p  transcript_id AT1G02690.2  
At1g02690	chr1:000584397	0.0	W/584397-584618,584860-584956,585053-585144,585237-585368,585500-585685,585779-585942,586023-586101,586192-586320,586439-586566,586649-587036	AT1G02690.1 CDS  gene_syn IMPA-6, IMPORTIN ALPHA ISOFORM 6, T14P4.3, T14P4_3  gene IMPA-6  function Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus|GO:0006606||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transporter activity|GO:0008565||ISS  product IMPA-6 (IMPORTIN ALPHA ISOFORM 6); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 6 (IMPA-6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: MOS6 (MODIFIER OF SNC1, 6); binding / protein transporter (TAIR:AT4G02150.1); Has 3205 Blast hits to 2408 proteins in 229 species: Archae - 4; Bacteria - 32; Metazoa - 1557; Fungi - 400; Plants - 681; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).  protein_id AT1G02690.1p  transcript_id AT1G02690.1  protein_id AT1G02690.1p  transcript_id AT1G02690.1  
At1g02700	chr1:000588367	0.0	W/588367-588540,588663-589232	AT1G02700.1 CDS  gene_syn T14P4.2, T14P4_2  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02140.1); Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 16; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G02700.1p  transcript_id AT1G02700.1  protein_id AT1G02700.1p  transcript_id AT1G02700.1  
At1g02710	chr1:000589706	0.0	C/589706-589996	AT1G02710.1 CDS  gene_syn T14P4.26, T14P4_26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 87773 Blast hits to 21059 proteins in 1292 species: Archae - 104; Bacteria - 30039; Metazoa - 26626; Fungi - 5362; Plants - 9346; Viruses - 1261; Other Eukaryotes - 15035 (source: NCBI BLink).  protein_id AT1G02710.1p  transcript_id AT1G02710.1  protein_id AT1G02710.1p  transcript_id AT1G02710.1  
At1g02720	chr1:000592115	0.0	W/592115-593200	AT1G02720.1 CDS  gene_syn GALACTURONOSYLTRANSFERASE 5, GATL5, T14P4.1, T14P4_1  gene GATL5  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL5 (GALACTURONOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GALACTURONOSYLTRANSFERASE 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL6; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT4G02130.3); Has 1149 Blast hits to 1139 proteins in 234 species: Archae - 0; Bacteria - 432; Metazoa - 230; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G02720.1p  transcript_id AT1G02720.1  protein_id AT1G02720.1p  transcript_id AT1G02720.1  
At1g02720	chr1:000592115	0.0	W/592115-593200	AT1G02720.2 CDS  gene_syn GALACTURONOSYLTRANSFERASE 5, GATL5, T14P4.1, T14P4_1  gene GATL5  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL5 (GALACTURONOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GALACTURONOSYLTRANSFERASE 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL6; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT4G02130.3); Has 1149 Blast hits to 1139 proteins in 234 species: Archae - 0; Bacteria - 432; Metazoa - 230; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G02720.2p  transcript_id AT1G02720.2  protein_id AT1G02720.2p  transcript_id AT1G02720.2  
At1g02730	chr1:000594697	0.0	C/594697-596478,596572-597382,597521-598473	AT1G02730.1 CDS  gene_syn ATCSLD5, CELLULOSE SYNTHASE LIKE D5, CELLULOSE SYNTHASE-LIKE D5, CSLD5, T14P4.29  gene ATCSLD5  function Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.  go_component Golgi apparatus|GO:0005794|17892446|IDA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_process plant-type cell wall biogenesis|GO:0009832||ISS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process cell wall biogenesis|GO:0042546|17892446|NAS  go_process shoot development|GO:0048367|17892446|IMP  go_function cellulose synthase activity|GO:0016759||ISS  go_function 1,4-beta-D-xylan synthase activity|GO:0047517|17892446|IMP  product ATCSLD5; 1,4-beta-D-xylan synthase/ cellulose synthase  note ATCSLD5; FUNCTIONS IN: 1,4-beta-D-xylan synthase activity, cellulose synthase activity; INVOLVED IN: response to cyclopentenone, shoot development, cell wall biogenesis, plant-type cell wall biogenesis, polysaccharide biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: CSLD3 (CELLULOSE SYNTHASE-LIKE D3); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT3G03050.1); Has 2218 Blast hits to 2004 proteins in 454 species: Archae - 2; Bacteria - 733; Metazoa - 91; Fungi - 12; Plants - 1317; Viruses - 2; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G02730.1p  transcript_id AT1G02730.1  protein_id AT1G02730.1p  transcript_id AT1G02730.1  
At1g02740	chr1:000599734	0.0	C/599734-599812,599892-599976,600065-600234,600434-600513,600721-600825,600936-600976,601227-601372,601547-601560,601653-601706,601812-602021	AT1G02740.1 CDS  gene_syn T14P4.28  go_component chromatin|GO:0000785||IEA  go_component nucleus|GO:0005634||IEA  go_process chromatin assembly or disassembly|GO:0006333||IEA  go_function chromatin binding|GO:0003682||IEA  product chromatin binding  note chromatin binding; FUNCTIONS IN: chromatin binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398), Tudor-like, plant (InterPro:IPR014002), MRG (InterPro:IPR008676), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: MRG family protein (TAIR:AT4G37280.1); Has 870 Blast hits to 753 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 682; Fungi - 111; Plants - 39; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G02740.1p  transcript_id AT1G02740.1  protein_id AT1G02740.1p  transcript_id AT1G02740.1  
At1g02750	chr1:000602673	0.0	W/602673-602754,602980-603125,603601-603678,603775-604134	AT1G02750.1 CDS  gene_syn T14P4.27  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to water deprivation|GO:0009414||ISS  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to water deprivation; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Drought induced 19 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: drought-responsive family protein (TAIR:AT4G02200.1); Has 126 Blast hits to 126 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02750.1p  transcript_id AT1G02750.1  protein_id AT1G02750.1p  transcript_id AT1G02750.1  
At1g02760	chr1:000604402	0.0	W/604402-604474	AT1G02760.1 tRNA  gene_syn 51600.TRNA-LYS-1, 51953.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT1G02760.1  
At1g02770	chr1:000605071	0.0	C/605071-605403,605515-605604,605705-605805,605919-606102,606176-606322,606529-606624	AT1G02770.1 CDS  gene_syn T14P4.24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19060.1); Has 77 Blast hits to 76 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02770.1p  transcript_id AT1G02770.1  protein_id AT1G02770.1p  transcript_id AT1G02770.1  
At1g02780	chr1:000608120	0.0	C/608120-608147,608242-608309,608398-608711,608816-608938,609280-609391	AT1G02780.1 CDS  gene_syn T14P4.34, emb2386, embryo defective 2386  gene emb2386  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product emb2386 (embryo defective 2386); structural constituent of ribosome  note embryo defective 2386 (emb2386); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19/L19e (InterPro:IPR000196), Ribosomal protein L19/L19e, domain 3 (InterPro:IPR015974), Ribosomal protein L19/L19e, domain 1 (InterPro:IPR015972); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L19 (RPL19C) (TAIR:AT4G02230.1); Has 865 Blast hits to 865 proteins in 295 species: Archae - 206; Bacteria - 0; Metazoa - 278; Fungi - 107; Plants - 94; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT1G02780.1p  transcript_id AT1G02780.1  protein_id AT1G02780.1p  transcript_id AT1G02780.1  
At1g02790	chr1:000610681	0.0	C/610681-610935,611026-611529,611618-611920,612019-612225	AT1G02790.1 CDS  gene_syn PGA4, POLYGALACTURONASE, POLYGALACTURONASE 4, T14P4.31  gene PGA4  function encodes a exopolygalacturonase.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650|10485285|ISS  go_function polygalacturonase activity|GO:0004650||ISS  product PGA4 (POLYGALACTURONASE 4); polygalacturonase  note POLYGALACTURONASE 4 (PGA4); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT3G07830.1); Has 2429 Blast hits to 2424 proteins in 312 species: Archae - 2; Bacteria - 478; Metazoa - 8; Fungi - 988; Plants - 879; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G02790.1p  transcript_id AT1G02790.1  protein_id AT1G02790.1p  transcript_id AT1G02790.1  
At1g02800	chr1:000613386	0.0	C/613386-613706,613994-614157,614240-614345,614449-614610,614722-614814,614989-615189,615277-615483,615852-616103	AT1G02800.1 CDS  gene_syn ARABIDOPSIS THALIANA CELLULASE 2, ATCEL2, CEL2, ENDO-1,4-BETA GLUCANASE, F22D16.21, F22D16_21  gene ATCEL2  function Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.  go_component endomembrane system|GO:0012505||IEA  go_process pattern specification process|GO:0007389|10074717|TAS  go_process response to nematode|GO:0009624|18069944|IEP  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function cellulase activity|GO:0008810|10074717|TAS  product ATCEL2; cellulase/ hydrolase, hydrolyzing O-glycosyl compounds  note ATCEL2; FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to nematode, pattern specification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G02290.1); Has 1137 Blast hits to 1132 proteins in 194 species: Archae - 0; Bacteria - 340; Metazoa - 132; Fungi - 14; Plants - 623; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G02800.1p  transcript_id AT1G02800.1  protein_id AT1G02800.1p  transcript_id AT1G02800.1  
At1g02810	chr1:000618284	0.0	W/618284-619328,619639-620333	AT1G02810.1 CDS  gene_syn F22D16.20, F22D16_20  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: ATPMEPCRB; pectinesterase (TAIR:AT4G02330.1); Has 1267 Blast hits to 1233 proteins in 181 species: Archae - 0; Bacteria - 238; Metazoa - 5; Fungi - 135; Plants - 888; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G02810.1p  transcript_id AT1G02810.1  protein_id AT1G02810.1p  transcript_id AT1G02810.1  
At1g02813	chr1:000620773	0.0	W/620773-621222	AT1G02813.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, cauline leaf, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02360.1); Has 289 Blast hits to 288 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 288; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G02813.1p  transcript_id AT1G02813.1  protein_id AT1G02813.1p  transcript_id AT1G02813.1  
At1g02816	chr1:000621637	0.0	W/621637-622137	AT1G02816.1 CDS  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02370.1); Has 327 Blast hits to 326 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 326; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G02816.1p  transcript_id AT1G02816.1  protein_id AT1G02816.1p  transcript_id AT1G02816.1  
At1g02820	chr1:000623933	0.0	C/623933-624134,624231-624304	AT1G02820.1 CDS  gene_syn F22D16.18, F22D16_18  go_process response to stress|GO:0006950||IEA  go_process embryonic development|GO:0009790||ISS  go_function molecular_function|GO:0003674||ND  product late embryogenesis abundant 3 family protein / LEA3 family protein  note late embryogenesis abundant 3 family protein / LEA3 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development, response to stress; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: SAG21 (SENESCENCE-ASSOCIATED GENE 21) (TAIR:AT4G02380.1); Has 95 Blast hits to 92 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02820.1p  transcript_id AT1G02820.1  protein_id AT1G02820.1p  transcript_id AT1G02820.1  
At1g02830	chr1:000625145	0.0	C/625145-625292,625373-625608	AT1G02830.1 CDS  gene_syn F22D16.17, F22D16_17  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  product 60S ribosomal protein L22 (RPL22A)  note 60S ribosomal protein L22 (RPL22A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: shoot apex, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L22 (RPL22C) (TAIR:AT5G27770.1); Has 490 Blast hits to 490 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 89; Plants - 73; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G02830.1p  transcript_id AT1G02830.1  protein_id AT1G02830.1p  transcript_id AT1G02830.1  
At1g02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,628935-628995	AT1G02840.2 CDS  gene_syn ATSRP34, F22D16.16, F22D16_16, SR1, SRP34  gene SR1  function SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|10215626|ISS  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_component interchromatin granule|GO:0035061|15034145|IDA  go_function RNA binding|GO:0003723||ISS  product SR1; RNA binding / nucleic acid binding / nucleotide binding  note SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor, putative / SR1 protein, putative (TAIR:AT4G02430.2); Has 20493 Blast hits to 14354 proteins in 599 species: Archae - 10; Bacteria - 760; Metazoa - 13252; Fungi - 2190; Plants - 1990; Viruses - 286; Other Eukaryotes - 2005 (source: NCBI BLink).  protein_id AT1G02840.2p  transcript_id AT1G02840.2  protein_id AT1G02840.2p  transcript_id AT1G02840.2  
At1g02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,629288-629321,629418-629494,629580-629583	AT1G02840.1 CDS  gene_syn ATSRP34, F22D16.16, F22D16_16, SR1, SRP34  gene SR1  function SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|10215626|ISS  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_component interchromatin granule|GO:0035061|15034145|IDA  go_function RNA binding|GO:0003723||ISS  product SR1; RNA binding / nucleic acid binding / nucleotide binding  note SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor, putative / SR1 protein, putative (TAIR:AT4G02430.2); Has 30426 Blast hits to 17112 proteins in 741 species: Archae - 12; Bacteria - 974; Metazoa - 19200; Fungi - 2749; Plants - 2550; Viruses - 546; Other Eukaryotes - 4395 (source: NCBI BLink).  protein_id AT1G02840.1p  transcript_id AT1G02840.1  protein_id AT1G02840.1p  transcript_id AT1G02840.1  
At1g02840	chr1:000626918	0.0	W/626918-627004,627100-627165,627308-627382,627482-627614,627701-627747,627835-627892,627970-628019,628112-628168,628246-628469,629288-629321,629418-629494,629580-629583	AT1G02840.3 CDS  gene_syn ATSRP34, F22D16.16, F22D16_16, SR1, SRP34  gene SR1  function SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|10215626|ISS  go_component nuclear speck|GO:0016607|15133128|IDA  go_component nuclear speck|GO:0016607|15686520|IDA  go_component interchromatin granule|GO:0035061|15034145|IDA  go_function RNA binding|GO:0003723||ISS  product SR1; RNA binding / nucleic acid binding / nucleotide binding  note SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor, putative / SR1 protein, putative (TAIR:AT4G02430.2); Has 30426 Blast hits to 17112 proteins in 741 species: Archae - 12; Bacteria - 974; Metazoa - 19200; Fungi - 2749; Plants - 2550; Viruses - 546; Other Eukaryotes - 4395 (source: NCBI BLink).  protein_id AT1G02840.3p  transcript_id AT1G02840.3  protein_id AT1G02840.3p  transcript_id AT1G02840.3  
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-631858,631928-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.2 CDS  gene_syn BETA GLUCOSIDASE 11, BGLU11, F22D16.15, F22D16_15  gene BGLU11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU11 (BETA GLUCOSIDASE 11); hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 11 (BGLU11); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 5757 Blast hits to 5510 proteins in 795 species: Archae - 98; Bacteria - 3123; Metazoa - 605; Fungi - 137; Plants - 850; Viruses - 0; Other Eukaryotes - 944 (source: NCBI BLink).  protein_id AT1G02850.2p  transcript_id AT1G02850.2  protein_id AT1G02850.2p  transcript_id AT1G02850.2  
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-631858,632000-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.3 CDS  gene_syn BETA GLUCOSIDASE 11, BGLU11, F22D16.15, F22D16_15  gene BGLU11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 5741 Blast hits to 5507 proteins in 795 species: Archae - 98; Bacteria - 3116; Metazoa - 605; Fungi - 137; Plants - 849; Viruses - 0; Other Eukaryotes - 936 (source: NCBI BLink).  protein_id AT1G02850.3p  transcript_id AT1G02850.3  protein_id AT1G02850.3p  transcript_id AT1G02850.3  
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-631858,632009-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.1 CDS  gene_syn BETA GLUCOSIDASE 11, BGLU11, F22D16.15, F22D16_15  gene BGLU11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 5733 Blast hits to 5503 proteins in 795 species: Archae - 98; Bacteria - 3112; Metazoa - 602; Fungi - 137; Plants - 849; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink).  protein_id AT1G02850.1p  transcript_id AT1G02850.1  protein_id AT1G02850.1p  transcript_id AT1G02850.1  
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-632043,632128-632348,632421-632449,632528-632615,632716-632806,632881-633085	AT1G02850.4 CDS  gene_syn BETA GLUCOSIDASE 11, BGLU11, F22D16.15, F22D16_15  gene BGLU11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 582 Blast hits to 531 proteins in 116 species: Archae - 3; Bacteria - 338; Metazoa - 157; Fungi - 24; Plants - 52; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G02850.4p  transcript_id AT1G02850.4  protein_id AT1G02850.4p  transcript_id AT1G02850.4  
At1g02850	chr1:000630569	0.0	W/630569-630703,630832-630895,630978-631033,631104-631179,631265-631336,631431-631518,631603-632043,632128-632348,632421-632449,632528-632615,632716-632806,632884-633085	AT1G02850.5 CDS  gene_syn BETA GLUCOSIDASE 11, BGLU11, F22D16.15, F22D16_15  gene BGLU11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU3 (BETA GLUCOSIDASE 2); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT4G22100.1); Has 5889 Blast hits to 5505 proteins in 795 species: Archae - 103; Bacteria - 3198; Metazoa - 607; Fungi - 137; Plants - 876; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).  protein_id AT1G02850.5p  transcript_id AT1G02850.5  protein_id AT1G02850.5p  transcript_id AT1G02850.5  
At1g02860	chr1:000635474	0.0	W/635474-635651,635739-635986,636081-636359,636592-636729,636828-636886,636978-637083	AT1G02860.1 CDS  gene_syn BAH1, BENZOIC ACID HYPERSENSITIVE 1, F22D16.14, F22D16_14, NLA, nitrogen limitation adaptation  gene NLA  function Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses.  go_component nucleus|GO:0005634|17355433|IDA  go_process plant-type hypersensitive response|GO:0009626|18753285|IMP  go_process systemic acquired resistance|GO:0009627|18753285|IMP  go_process salicylic acid biosynthetic process|GO:0009697|18753285|IMP  go_process response to salicylic acid stimulus|GO:0009751|18753285|IEP  go_process response to nitrate|GO:0010167|17355433|IMP  go_process regulation of salicylic acid metabolic process|GO:0010337|18753285|IMP  go_process defense response to bacterium|GO:0042742|18753285|IMP  go_process response to benzoic acid stimulus|GO:0080021|18753285|IEP  go_process response to benzoic acid stimulus|GO:0080021|18753285|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|18753285|TAS  product NLA (nitrogen limitation adaptation); ubiquitin-protein ligase  note nitrogen limitation adaptation (NLA); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (TAIR:AT2G38920.1); Has 1618 Blast hits to 1606 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 1274; Fungi - 87; Plants - 128; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT1G02860.1p  transcript_id AT1G02860.1  protein_id AT1G02860.1p  transcript_id AT1G02860.1  
At1g02860	chr1:000635474	0.0	W/635474-635651,635739-635986,636081-636359,636592-636729,636828-636886,636984-637083	AT1G02860.2 CDS  gene_syn BAH1, BENZOIC ACID HYPERSENSITIVE 1, F22D16.14, F22D16_14, NLA, nitrogen limitation adaptation  gene NLA  function Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses.  go_component nucleus|GO:0005634|17355433|IDA  go_process plant-type hypersensitive response|GO:0009626|18753285|IMP  go_process systemic acquired resistance|GO:0009627|18753285|IMP  go_process salicylic acid biosynthetic process|GO:0009697|18753285|IMP  go_process response to salicylic acid stimulus|GO:0009751|18753285|IEP  go_process response to nitrate|GO:0010167|17355433|IMP  go_process regulation of salicylic acid metabolic process|GO:0010337|18753285|IMP  go_process defense response to bacterium|GO:0042742|18753285|IMP  go_process response to benzoic acid stimulus|GO:0080021|18753285|IEP  go_process response to benzoic acid stimulus|GO:0080021|18753285|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|18753285|TAS  product NLA (nitrogen limitation adaptation); ubiquitin-protein ligase  note nitrogen limitation adaptation (NLA); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (TAIR:AT2G38920.2); Has 1544 Blast hits to 1532 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 1198; Fungi - 88; Plants - 127; Viruses - 1; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G02860.2p  transcript_id AT1G02860.2  protein_id AT1G02860.2p  transcript_id AT1G02860.2  
At1g02870	chr1:000637401	0.0	C/637401-637514,637602-637723,638258-638603	AT1G02870.1 CDS  gene_syn F22D16.13, F22D16_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 68 Blast hits to 68 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G02870.1p  transcript_id AT1G02870.1  protein_id AT1G02870.1p  transcript_id AT1G02870.1  
At1g02880	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643921	AT1G02880.4 CDS  gene_syn F22D16.12, F22D16_12, THIAMIN PYROPHOSPHOKINASE1, TPK1  gene TPK1  function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.  go_component cytosol|GO:0005829|17611796|IDA  go_process thiamin metabolic process|GO:0006772|17611796|IGI  go_process thiamin metabolic process|GO:0006772||ISS  go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA  go_function thiamin diphosphokinase activity|GO:0004788||ISS  product TPK1 (THIAMIN PYROPHOSPHOKINASE1); thiamin diphosphokinase  note THIAMIN PYROPHOSPHOKINASE1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding region (InterPro:IPR007373), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic region (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: TPK2 (Thiamin pyrophosphokinase 2); thiamin diphosphokinase (TAIR:AT2G44750.2); Has 584 Blast hits to 584 proteins in 211 species: Archae - 0; Bacteria - 172; Metazoa - 115; Fungi - 86; Plants - 45; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G02880.4p  transcript_id AT1G02880.4  protein_id AT1G02880.4p  transcript_id AT1G02880.4  
At1g02880	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643949,644160-644256,644350-644476	AT1G02880.2 CDS  gene_syn F22D16.12, F22D16_12, THIAMIN PYROPHOSPHOKINASE1, TPK1  gene TPK1  function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.  go_component cytosol|GO:0005829|17611796|IDA  go_process thiamin metabolic process|GO:0006772|17611796|IGI  go_process thiamin metabolic process|GO:0006772||ISS  go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA  go_function thiamin diphosphokinase activity|GO:0004788||ISS  product TPK1 (THIAMIN PYROPHOSPHOKINASE1); thiamin diphosphokinase  note THIAMIN PYROPHOSPHOKINASE1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding region (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic region (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: TPK2 (Thiamin pyrophosphokinase 2); thiamin diphosphokinase (TAIR:AT2G44750.2); Has 813 Blast hits to 813 proteins in 283 species: Archae - 0; Bacteria - 306; Metazoa - 116; Fungi - 91; Plants - 46; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G02880.2p  transcript_id AT1G02880.2  protein_id AT1G02880.2p  transcript_id AT1G02880.2  
At1g02880	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643949,644160-644256,644350-644485	AT1G02880.3 CDS  gene_syn F22D16.12, F22D16_12, THIAMIN PYROPHOSPHOKINASE1, TPK1  gene TPK1  function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.  go_component cytosol|GO:0005829|17611796|IDA  go_process thiamin metabolic process|GO:0006772|17611796|IGI  go_process thiamin metabolic process|GO:0006772||ISS  go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA  go_function thiamin diphosphokinase activity|GO:0004788||ISS  product TPK1 (THIAMIN PYROPHOSPHOKINASE1); thiamin diphosphokinase  note THIAMIN PYROPHOSPHOKINASE1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding region (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic region (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: TPK2 (Thiamin pyrophosphokinase 2); thiamin diphosphokinase (TAIR:AT2G44750.2); Has 813 Blast hits to 813 proteins in 283 species: Archae - 0; Bacteria - 306; Metazoa - 116; Fungi - 91; Plants - 46; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G02880.3p  transcript_id AT1G02880.3  protein_id AT1G02880.3p  transcript_id AT1G02880.3  
At1g02880	chr1:000643063	0.0	C/643063-643208,643305-643554,643644-643745,643877-643972	AT1G02880.1 CDS  gene_syn F22D16.12, F22D16_12, THIAMIN PYROPHOSPHOKINASE1, TPK1  gene TPK1  function Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.  go_component cytosol|GO:0005829|17611796|IDA  go_process thiamin metabolic process|GO:0006772|17611796|IGI  go_process thiamin metabolic process|GO:0006772||ISS  go_function thiamin diphosphokinase activity|GO:0004788|17611796|IDA  go_function thiamin diphosphokinase activity|GO:0004788||ISS  product TPK1 (THIAMIN PYROPHOSPHOKINASE1); thiamin diphosphokinase  note THIAMIN PYROPHOSPHOKINASE1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding region (InterPro:IPR007373), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic region (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: TPK2 (Thiamin pyrophosphokinase 2); thiamin diphosphokinase (TAIR:AT2G44750.2); Has 765 Blast hits to 765 proteins in 268 species: Archae - 0; Bacteria - 282; Metazoa - 115; Fungi - 88; Plants - 44; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G02880.1p  transcript_id AT1G02880.1  protein_id AT1G02880.1p  transcript_id AT1G02880.1  
At1g02890	chr1:000645372	0.0	C/645372-645485,645575-645679,645755-645814,645899-646037,646126-646310,646406-646489,646567-646689,646777-646956,647038-647107,647184-647280,647367-647442,647531-647620,647703-647807,647924-647995,648102-648275,648362-648432,648523-648656,648766-648829,648911-649139,649368-649459,649551-649675,649762-650445,650537-650709,650791-650904,651128-651219,651320-651539,651711-651797	AT1G02890.1 CDS  gene_syn F22D16.11, F22D16_11  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 23205 Blast hits to 21556 proteins in 1781 species: Archae - 951; Bacteria - 7411; Metazoa - 4074; Fungi - 2356; Plants - 1493; Viruses - 28; Other Eukaryotes - 6892 (source: NCBI BLink).  protein_id AT1G02890.1p  transcript_id AT1G02890.1  protein_id AT1G02890.1p  transcript_id AT1G02890.1  
At1g02890	chr1:000645372	0.0	C/645372-645485,645575-645679,645755-645814,645899-646037,646126-646310,646567-646689,646777-646956,647038-647107,647184-647280,647367-647442,647531-647620,647703-647807,647924-647995,648102-648275,648362-648432,648523-648656,648766-648829,648911-649139,649368-649459,649551-649675,649762-650445,650537-650709,650791-650904,651128-651219,651320-651539,651711-651797	AT1G02890.2 CDS  gene_syn F22D16.11, F22D16_11  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 19180 Blast hits to 17754 proteins in 1697 species: Archae - 836; Bacteria - 5167; Metazoa - 3754; Fungi - 2073; Plants - 1340; Viruses - 10; Other Eukaryotes - 6000 (source: NCBI BLink).  protein_id AT1G02890.2p  transcript_id AT1G02890.2  protein_id AT1G02890.2p  transcript_id AT1G02890.2  
At1g02900	chr1:000653976	0.0	C/653976-654338	AT1G02900.1 CDS  gene_syn ATRALF1, F22D16.10, F22D16_10, RALF-LIKE 1, RALF1, RALFL1, RAPID ALKALINIZATION FACTOR 1  gene RALF1  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALF1 (RAPID ALKALINIZATION FACTOR 1); signal transducer  note RAPID ALKALINIZATION FACTOR 1 (RALF1); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL22 (ralf-like 22); signal transducer (TAIR:AT3G05490.1); Has 158 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02900.1p  transcript_id AT1G02900.1  protein_id AT1G02900.1p  transcript_id AT1G02900.1  
At1g02910	chr1:000655749	0.0	C/655749-655823,655933-656029,656134-656234,656317-656505,656588-656745,656827-657058,657142-657277,657392-657495,657856-658125	AT1G02910.1 CDS  gene_syn F22D16.9, F22D16_9, LOW PSII ACCUMULATION1, LPA1  gene LPA1  function Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues.  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_process photosystem II oxygen evolving complex assembly|GO:0010270|16531500|IMP  product LPA1 (LOW PSII ACCUMULATION1); binding  note LOW PSII ACCUMULATION1 (LPA1); FUNCTIONS IN: binding; INVOLVED IN: photosystem II oxygen evolving complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28740.1); Has 119 Blast hits to 119 proteins in 33 species: Archae - 3; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G02910.1p  transcript_id AT1G02910.1  protein_id AT1G02910.1p  transcript_id AT1G02910.1  
At1g02920	chr1:000658886	0.0	C/658886-659316,659423-659471,659556-659705	AT1G02920.1 CDS  gene_syn ATGSTF7, ATGSTF8, F22D16.8, F22D16_8, GLUTATHIONE S-TRANSFERASE 11, GST11, GSTF7  gene GSTF7  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component vacuole|GO:0005773|15539469|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_function glutathione binding|GO:0043295|15159623|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product GSTF7; copper ion binding / glutathione binding / glutathione transferase  note GSTF7; FUNCTIONS IN: glutathione transferase activity, copper ion binding, glutathione binding; INVOLVED IN: response to cadmium ion, response to salt stress, defense response to bacterium, toxin catabolic process; LOCATED IN: nucleus, vacuole, cytoplasm; EXPRESSED IN: root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTF6 (GLUTATHIONE S-TRANSFERASE); copper ion binding / glutathione binding / glutathione transferase (TAIR:AT1G02930.1); Has 8010 Blast hits to 8005 proteins in 880 species: Archae - 0; Bacteria - 3838; Metazoa - 1332; Fungi - 426; Plants - 719; Viruses - 0; Other Eukaryotes - 1695 (source: NCBI BLink).  protein_id AT1G02920.1p  transcript_id AT1G02920.1  protein_id AT1G02920.1p  transcript_id AT1G02920.1  
At1g02930	chr1:000661363	0.0	C/661363-661790,661901-661949,662042-662191	AT1G02930.1 CDS  gene_syn ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ATGSTF3, ATGSTF6, EARLY RESPONSIVE TO DEHYDRATION 11, ERD11, F22D16.7, F22D16_7, GLUTATHIONE S-TRANSFERASE, GLUTATHIONE S-TRANSFERASE 1, GLUTATHIONE S-TRANSFERASE 6, GST1, GSTF6  gene ATGSTF6  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function copper ion binding|GO:0005507|16526091|IDA  go_function glutathione binding|GO:0043295|15159623|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to stress|GO:0006950||IEP  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_process response to oxidative stress|GO:0006979|9501110|IEP  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to water deprivation|GO:0009414|8253194|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF6 (GLUTATHIONE S-TRANSFERASE); copper ion binding / glutathione binding / glutathione transferase  note GLUTATHIONE S-TRANSFERASE (ATGSTF6); FUNCTIONS IN: glutathione transferase activity, copper ion binding, glutathione binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, cell wall, vacuole, cytoplasm; EXPRESSED IN: fruit, root, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF7; copper ion binding / glutathione binding / glutathione transferase (TAIR:AT1G02920.1); Has 8468 Blast hits to 8463 proteins in 939 species: Archae - 0; Bacteria - 4029; Metazoa - 1462; Fungi - 377; Plants - 818; Viruses - 0; Other Eukaryotes - 1782 (source: NCBI BLink).  protein_id AT1G02930.1p  transcript_id AT1G02930.1  protein_id AT1G02930.1p  transcript_id AT1G02930.1  
At1g02940	chr1:000663079	0.0	C/663079-663545,663615-663663,663760-663902,664017-664128	AT1G02940.1 CDS  gene_syn ATGSTF5, F22D16.6, F22D16_6, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5, GSTF5  gene GSTF5  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cytoplasm|GO:0005737|12090627|NAS  go_component mitochondrion|GO:0005739|14671022|IDA  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase  note GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5 (GSTF5); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: N-terminal protein myristoylation, toxin catabolic process; LOCATED IN: mitochondrion, cytoplasm; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336), Glutathione S-transferase, N-terminal (InterPro:IPR004045); BEST Arabidopsis thaliana protein match is: ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4); glutathione transferase (TAIR:AT1G02950.3); Has 10445 Blast hits to 10437 proteins in 917 species: Archae - 2; Bacteria - 5511; Metazoa - 1521; Fungi - 454; Plants - 763; Viruses - 0; Other Eukaryotes - 2194 (source: NCBI BLink).  protein_id AT1G02940.1p  transcript_id AT1G02940.1  protein_id AT1G02940.1p  transcript_id AT1G02940.1  
At1g02950	chr1:000665308	0.0	C/665308-665777,665858-665910,666114-666244	AT1G02950.4 CDS  gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GLUTATHIONE S-TRANSFERASE F4, GST31  gene ATGSTF4  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4); glutathione transferase  note GLUTATHIONE S-TRANSFERASE F4 (ATGSTF4); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933); BEST Arabidopsis thaliana protein match is: GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase (TAIR:AT1G02940.1); Has 529 Blast hits to 529 proteins in 79 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 60; Plants - 453; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G02950.4p  transcript_id AT1G02950.4  protein_id AT1G02950.4p  transcript_id AT1G02950.4  
At1g02950	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666256,666351-666420	AT1G02950.1 CDS  gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GLUTATHIONE S-TRANSFERASE F4, GST31  gene ATGSTF4  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4); glutathione transferase  note GLUTATHIONE S-TRANSFERASE F4 (ATGSTF4); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase (TAIR:AT1G02940.1); Has 5399 Blast hits to 5394 proteins in 755 species: Archae - 0; Bacteria - 2403; Metazoa - 855; Fungi - 197; Plants - 605; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT1G02950.1p  transcript_id AT1G02950.1  protein_id AT1G02950.1p  transcript_id AT1G02950.1  
At1g02950	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666256,666351-666420	AT1G02950.3 CDS  gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GLUTATHIONE S-TRANSFERASE F4, GST31  gene ATGSTF4  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4); glutathione transferase  note GLUTATHIONE S-TRANSFERASE F4 (ATGSTF4); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase (TAIR:AT1G02940.1); Has 5399 Blast hits to 5394 proteins in 755 species: Archae - 0; Bacteria - 2403; Metazoa - 855; Fungi - 197; Plants - 605; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT1G02950.3p  transcript_id AT1G02950.3  protein_id AT1G02950.3p  transcript_id AT1G02950.3  
At1g02950	chr1:000665308	0.0	C/665308-665777,665862-665910,666114-666262,666351-666420	AT1G02950.2 CDS  gene_syn ATGSTF4, F22D16.5, F22D16_5, GLUTATHIONE S-TRANSFERASE 31, GLUTATHIONE S-TRANSFERASE F4, GST31  gene ATGSTF4  function Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4); glutathione transferase  note GLUTATHIONE S-TRANSFERASE F4 (ATGSTF4); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5); glutathione transferase (TAIR:AT1G02940.1); Has 5415 Blast hits to 5410 proteins in 756 species: Archae - 0; Bacteria - 2409; Metazoa - 863; Fungi - 197; Plants - 613; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).  protein_id AT1G02950.2p  transcript_id AT1G02950.2  protein_id AT1G02950.2p  transcript_id AT1G02950.2  
At1g02952	chr1:000665354	0.0	W/665354-666367	AT1G02952.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G02950  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G02952.1  
At1g02960	chr1:000667002	0.0	C/667002-667068,667151-667281,667373-667437,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.1 CDS  gene_syn F22D16.4, F22D16_4  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 64 Blast hits to 63 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 19; Fungi - 5; Plants - 15; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G02960.1p  transcript_id AT1G02960.1  protein_id AT1G02960.1p  transcript_id AT1G02960.1  
At1g02960	chr1:000667002	0.0	C/667002-667068,667151-667281,667373-667464,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.2 CDS  gene_syn F22D16.4, F22D16_4  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 81 Blast hits to 80 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 11; Plants - 15; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G02960.2p  transcript_id AT1G02960.2  protein_id AT1G02960.2p  transcript_id AT1G02960.2  
At1g02960	chr1:000667325	0.0	C/667325-667437,667541-667641,667735-667868,667957-668082,668173-668468,668613-668745,668856-668987,669079-669134,669227-669266,669461-669513,669620-669650,669750-669773	AT1G02960.3 CDS  gene_syn F22D16.4, F22D16_4  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 63 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 19; Fungi - 5; Plants - 14; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G02960.3p  transcript_id AT1G02960.3  protein_id AT1G02960.3p  transcript_id AT1G02960.3  
At1g02965	chr1:000671661	0.0	C/671661-671783,671919-671974,672106-672145,672332-672406,672518-672548,672651-672814	AT1G02965.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02960.3); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G02965.1p  transcript_id AT1G02965.1  protein_id AT1G02965.1p  transcript_id AT1G02965.1  
At1g02970	chr1:000673408	0.0	W/673408-673706,673964-674024,674099-674165,674441-674704,674813-674880,674968-675077,675187-675227,675340-675494,675592-675945,676044-676127	AT1G02970.1 CDS  gene_syn ARABIDOPSIS WEE1 KINASE HOMOLOG, ATWEE1, F22D16.3, F22D16_3, WEE1, WEE1-KINASE  gene WEE1  function Protein kinase that negatively regulates the entry into mitosis.  go_process DNA replication checkpoint|GO:0000076|17209125|IEP  go_process cell cycle arrest|GO:0007050|17209125|IEP  go_function protein kinase activity|GO:0004672|16856985|IDA  go_function kinase activity|GO:0016301||ISS  product WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG); kinase/ protein kinase  note ARABIDOPSIS WEE1 KINASE HOMOLOG (WEE1); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: DNA replication checkpoint, cell cycle arrest; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CPK29; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G76040.2); Has 74407 Blast hits to 73361 proteins in 3002 species: Archae - 70; Bacteria - 6701; Metazoa - 34012; Fungi - 7315; Plants - 10592; Viruses - 376; Other Eukaryotes - 15341 (source: NCBI BLink).  protein_id AT1G02970.1p  transcript_id AT1G02970.1  protein_id AT1G02970.1p  transcript_id AT1G02970.1  
At1g02980	chr1:000677869	0.0	W/677869-678002,678094-678193,678289-678522,678592-678873,678971-679060,679148-679288,679368-679490,679578-679730,679821-679997,680103-680264,680341-680484,680559-680777,680858-681025,681111-681212	AT1G02980.1 CDS  gene_syn ATCUL2, CUL2, CULLIN 2, F22D16.2, F22D16_2  gene CUL2  function encodes an Arabidopsis cullin  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin protein ligase binding|GO:0031625||IEA  go_component SCF ubiquitin ligase complex|GO:0019005|12795696|ISS  go_process cell cycle|GO:0007049||ISS  product CUL2 (CULLIN 2); ubiquitin protein ligase binding  note CULLIN 2 (CUL2); FUNCTIONS IN: ubiquitin protein ligase binding; INVOLVED IN: cell cycle, ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, chloroplast envelope; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: ubiquitin protein ligase binding (TAIR:AT1G43140.1); Has 1643 Blast hits to 1621 proteins in 174 species: Archae - 0; Bacteria - 8; Metazoa - 804; Fungi - 327; Plants - 196; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT1G02980.1p  transcript_id AT1G02980.1  protein_id AT1G02980.1p  transcript_id AT1G02980.1  
At1g02990	chr1:000681724	0.0	C/681724-681921,682243-682403,682732-682892,683175-683317,683402-684777,684864-685965,686056-686424,686505-686597,686679-686751,686844-686884	AT1G02990.2 CDS  gene_syn F22D16.1, F22D16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G62900.1); Has 5176 Blast hits to 3822 proteins in 317 species: Archae - 10; Bacteria - 289; Metazoa - 2234; Fungi - 277; Plants - 207; Viruses - 11; Other Eukaryotes - 2148 (source: NCBI BLink).  protein_id AT1G02990.2p  transcript_id AT1G02990.2  protein_id AT1G02990.2p  transcript_id AT1G02990.2  
At1g02990	chr1:000683065	0.0	C/683065-683077,683175-683317,683402-684777,684864-685965,686056-686424,686505-686597,686679-686751,686844-686884	AT1G02990.1 CDS  gene_syn F22D16.1, F22D16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G62900.1); Has 5071 Blast hits to 3731 proteins in 313 species: Archae - 10; Bacteria - 271; Metazoa - 2187; Fungi - 266; Plants - 194; Viruses - 11; Other Eukaryotes - 2132 (source: NCBI BLink).  protein_id AT1G02990.1p  transcript_id AT1G02990.1  protein_id AT1G02990.1p  transcript_id AT1G02990.1  
At1g03000	chr1:000688057	0.0	C/688057-688146,688281-688364,688458-688602,688679-688950,689036-689158,689251-689409,689532-689813,689985-690173,690399-690579,690757-690898,691121-691364,691443-692078,692175-692453	AT1G03000.1 CDS  gene_syn F10O3.18, F10O3_18, PEROXIN 6, PEX6  gene PEX6  function Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process fatty acid beta-oxidation|GO:0006635|17478547|IMP  go_process protein import into peroxisome matrix|GO:0016558|14745029|IMP  go_process protein import into peroxisome matrix|GO:0016558|17478547|IMP  go_function ATPase activity|GO:0016887||ISS  product PEX6 (PEROXIN 6); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding  note PEROXIN 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48, putative / CDC48, putative (TAIR:AT3G53230.1); Has 24319 Blast hits to 21520 proteins in 1795 species: Archae - 946; Bacteria - 7551; Metazoa - 4455; Fungi - 2626; Plants - 1800; Viruses - 24; Other Eukaryotes - 6917 (source: NCBI BLink).  protein_id AT1G03000.1p  transcript_id AT1G03000.1  protein_id AT1G03000.1p  transcript_id AT1G03000.1  
At1g03010	chr1:000693480	0.0	W/693480-693571,694117-694183,694280-695476,695547-695793,695887-696188	AT1G03010.1 CDS  gene_syn F10O3.17, F10O3_17  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: inflorescence meristem, leaf apex, cauline leaf, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT2G47860.1); Has 432 Blast hits to 419 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 428; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03010.1p  transcript_id AT1G03010.1  protein_id AT1G03010.1p  transcript_id AT1G03010.1  
At1g03020	chr1:000698207	0.0	C/698207-698515	AT1G03020.1 CDS  gene_syn F10O3.16, F10O3_16  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  go_function arsenate reductase (glutaredoxin) activity|GO:0008794||ISS  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT3G62930.1); Has 1106 Blast hits to 1104 proteins in 204 species: Archae - 0; Bacteria - 71; Metazoa - 291; Fungi - 226; Plants - 428; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G03020.1p  transcript_id AT1G03020.1  protein_id AT1G03020.1p  transcript_id AT1G03020.1  
At1g03022	chr1:000699121	0.0	W/699121-699246	AT1G03022.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G03022.1p  transcript_id AT1G03022.1  protein_id AT1G03022.1p  transcript_id AT1G03022.1  
At1g03030	chr1:000701621	0.0	W/701621-701681,701775-701875,701976-702019,702106-702183,702276-702468,702567-702597,702679-702737,702828-702901,703012-703098,703195-703256,703353-703381,703482-703568	AT1G03030.1 CDS  gene_syn F10O3.15, F10O3_15  go_component chloroplast|GO:0009507|18431481|IDA  go_function ATP binding|GO:0005524||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product phosphoribulokinase/uridine kinase family protein  note phosphoribulokinase/uridine kinase family protein; FUNCTIONS IN: kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uridine kinase (InterPro:IPR000764); Has 1794 Blast hits to 1794 proteins in 581 species: Archae - 7; Bacteria - 1124; Metazoa - 151; Fungi - 173; Plants - 39; Viruses - 0; Other Eukaryotes - 300 (source: NCBI BLink).  protein_id AT1G03030.1p  transcript_id AT1G03030.1  protein_id AT1G03030.1p  transcript_id AT1G03030.1  
At1g03040	chr1:000704279	0.0	C/704279-704494,704588-704668,705064-705129,705302-705367,705534-705656,706101-706457	AT1G03040.1 CDS  gene_syn F10O3.14, F10O3_14  go_component nucleus|GO:0005634||IEA  go_process acetyl-CoA biosynthetic process from pyruvate|GO:0006086||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor (TAIR:AT4G02590.2); Has 1617 Blast hits to 1617 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 1602; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03040.1p  transcript_id AT1G03040.1  protein_id AT1G03040.1p  transcript_id AT1G03040.1  
At1g03050	chr1:000707726	0.0	W/707726-708189,708304-708509,708601-709467,709598-709860	AT1G03050.1 CDS  gene_syn F10O3.13, F10O3_13  go_component clathrin coat|GO:0030118||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: N-terminal protein myristoylation, clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT4G02650.1); Has 1593 Blast hits to 1129 proteins in 163 species: Archae - 4; Bacteria - 34; Metazoa - 881; Fungi - 155; Plants - 233; Viruses - 12; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT1G03050.1p  transcript_id AT1G03050.1  protein_id AT1G03050.1p  transcript_id AT1G03050.1  
At1g03055	chr1:000710102	0.0	C/710102-710136,710241-710333,710695-710801,710955-711016,711092-711184,711263-711408,711505-711763	AT1G03055.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G03055.1p  transcript_id AT1G03055.1  protein_id AT1G03055.1p  transcript_id AT1G03055.1  
At1g03055	chr1:000710912	0.0	C/710912-711016,711092-711184,711263-711408,711505-711763	AT1G03055.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G03055.2p  transcript_id AT1G03055.2  protein_id AT1G03055.2p  transcript_id AT1G03055.2  
At1g03060	chr1:000712971	0.0	C/712971-714206,714317-714463,714558-714864,715007-715315,715660-718662,718935-720585,720681-721795,721905-722007,722116-722815,722966-724119,724275-724389,724681-724746,724890-725081,725236-725409,725552-725608,725689-725824,726037-726122,726275-726347,726710-726891	AT1G03060.1 CDS  gene_syn F10O3.12, F10O3_12  go_function binding|GO:0005488||IEA  go_process signal transduction|GO:0007165||ISS  product WD-40 repeat family protein / beige-related  note WD-40 repeat family protein / beige-related; FUNCTIONS IN: binding; INVOLVED IN: signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / beige-related (TAIR:AT4G02660.1); Has 6446 Blast hits to 4823 proteins in 277 species: Archae - 4; Bacteria - 1008; Metazoa - 3138; Fungi - 867; Plants - 406; Viruses - 0; Other Eukaryotes - 1023 (source: NCBI BLink).  protein_id AT1G03060.1p  transcript_id AT1G03060.1  protein_id AT1G03060.1p  transcript_id AT1G03060.1  
At1g03070	chr1:000730148	0.0	W/730148-730415,730497-730610,730916-731073,731176-731379	AT1G03070.1 CDS  gene_syn F10O3.11, F10O3_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function glutamate binding|GO:0016595||ISS  product glutamate binding  note glutamate binding; FUNCTIONS IN: glutamate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: glutamate binding (TAIR:AT4G02690.1); Has 3927 Blast hits to 3927 proteins in 938 species: Archae - 0; Bacteria - 1737; Metazoa - 709; Fungi - 89; Plants - 119; Viruses - 54; Other Eukaryotes - 1219 (source: NCBI BLink).  protein_id AT1G03070.1p  transcript_id AT1G03070.1  protein_id AT1G03070.1p  transcript_id AT1G03070.1  
At1g03080	chr1:000731794	0.0	C/731794-732741,732928-737081,737233-737332	AT1G03080.1 CDS  gene_syn F10O3.10, F10O3_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT3G22790.1); Has 169162 Blast hits to 69460 proteins in 2232 species: Archae - 2114; Bacteria - 24914; Metazoa - 82448; Fungi - 11850; Plants - 6375; Viruses - 760; Other Eukaryotes - 40701 (source: NCBI BLink).  protein_id AT1G03080.1p  transcript_id AT1G03080.1  protein_id AT1G03080.1p  transcript_id AT1G03080.1  
At1g03090	chr1:000739715	0.0	W/739715-740050,740124-740245,740355-740502,740620-740757,740970-741065,741148-741207,741509-741601,741684-741795,741946-742050,742181-742317,742502-742736,742822-742982,743090-743203,743301-743546,743620-743716,743815-743819	AT1G03090.2 CDS  gene_syn MCCA  gene MCCA  function MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component mitochondrion|GO:0005739|12068107|IDA  go_process leucine catabolic process|GO:0006552|12068107|IDA  go_function methylcrotonoyl-CoA carboxylase activity|GO:0004485|12068107|IDA  product MCCA; methylcrotonoyl-CoA carboxylase  note MCCA; FUNCTIONS IN: methylcrotonoyl-CoA carboxylase activity; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, cytosolic ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), PreATP-grasp-like fold (InterPro:IPR016185), Biotin-binding site (InterPro:IPR001882), Biotin carboxylation region (InterPro:IPR011764), ATP-grasp fold (InterPro:IPR011761), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054); BEST Arabidopsis thaliana protein match is: CAC2; acetyl-CoA carboxylase/ biotin carboxylase (TAIR:AT5G35360.1); Has 27432 Blast hits to 23731 proteins in 2048 species: Archae - 438; Bacteria - 14075; Metazoa - 1293; Fungi - 738; Plants - 543; Viruses - 0; Other Eukaryotes - 10345 (source: NCBI BLink).  protein_id AT1G03090.2p  transcript_id AT1G03090.2  protein_id AT1G03090.2p  transcript_id AT1G03090.2  
At1g03090	chr1:000739715	0.0	W/739715-740050,740124-740245,740355-740502,740620-740757,740970-741065,741509-741601,741684-741795,741946-742050,742181-742317,742502-742736,742822-742982,743090-743203,743301-743546,743620-743716,743815-743819	AT1G03090.1 CDS  gene_syn MCCA  gene MCCA  function MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component mitochondrion|GO:0005739|12068107|IDA  go_process leucine catabolic process|GO:0006552|12068107|IDA  go_function methylcrotonoyl-CoA carboxylase activity|GO:0004485|12068107|IDA  product MCCA; methylcrotonoyl-CoA carboxylase  note MCCA; FUNCTIONS IN: methylcrotonoyl-CoA carboxylase activity; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, cytosolic ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089), Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), PreATP-grasp-like fold (InterPro:IPR016185), Biotin-binding site (InterPro:IPR001882), Biotin carboxylation region (InterPro:IPR011764), Biotin carboxylase, C-terminal (InterPro:IPR005482), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Rudiment single hybrid motif (InterPro:IPR011054), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: CAC2; acetyl-CoA carboxylase/ biotin carboxylase (TAIR:AT5G35360.1); Has 23363 Blast hits to 20935 proteins in 1747 species: Archae - 377; Bacteria - 11833; Metazoa - 763; Fungi - 593; Plants - 534; Viruses - 0; Other Eukaryotes - 9263 (source: NCBI BLink).  protein_id AT1G03090.1p  transcript_id AT1G03090.1  protein_id AT1G03090.1p  transcript_id AT1G03090.1  
At1g03100	chr1:000744026	0.0	C/744026-746407	AT1G03100.1 CDS  gene_syn F10O3.8, F10O3_8  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G69290.1); Has 4755 Blast hits to 2316 proteins in 91 species: Archae - 0; Bacteria - 27; Metazoa - 106; Fungi - 14; Plants - 4500; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G03100.1p  transcript_id AT1G03100.1  protein_id AT1G03100.1p  transcript_id AT1G03100.1  
At1g03103	chr1:000747219	0.0	W/747219-747531,747622-747726,747858-747955	AT1G03103.1 CDS  go_process lipid transport|GO:0006869||IEA  go_component membrane|GO:0016020|11152613|ISS  go_function molecular_function|GO:0003674||ND  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G22600.1); Has 661 Blast hits to 612 proteins in 56 species: Archae - 7; Bacteria - 29; Metazoa - 10; Fungi - 5; Plants - 536; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G03103.1p  transcript_id AT1G03103.1  protein_id AT1G03103.1p  transcript_id AT1G03103.1  
At1g03106	chr1:000748442	0.0	C/748442-748639	AT1G03106.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03106.1p  transcript_id AT1G03106.1  protein_id AT1G03106.1p  transcript_id AT1G03106.1  
At1g03110	chr1:000749359	0.0	W/749359-749495,749785-749949,750118-750298,750416-750472,750557-750627,750796-750874,750957-751016,751120-751223,751297-751357,751428-751796	AT1G03110.1 CDS  gene_syn F10O3.6, F10O3_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / katanin p80 subunit, putative (TAIR:AT1G61210.1); Has 10142 Blast hits to 5991 proteins in 342 species: Archae - 38; Bacteria - 2987; Metazoa - 3498; Fungi - 1909; Plants - 650; Viruses - 0; Other Eukaryotes - 1060 (source: NCBI BLink).  protein_id AT1G03110.1p  transcript_id AT1G03110.1  protein_id AT1G03110.1p  transcript_id AT1G03110.1  
At1g03120	chr1:000752271	0.0	W/752271-752660,752982-753140	AT1G03120.1 CDS  gene_syn ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 28, ATRAB28, F10O3.5, F10O3_5  gene ATRAB28  function Atrab28 plays a role in the ion cell balance during late embryogenesis and germination.  go_component nucleus|GO:0005634|12175017|IDA  go_component nucleus|GO:0005634|12175017|ISS  go_component nucleolus|GO:0005730|12175017|IDA  go_process cellular ion homeostasis|GO:0006873|12175017|IMP  go_process multicellular organismal development|GO:0007275||ISS  go_process seed germination|GO:0009845|12175017|IMP  go_process response to lithium ion|GO:0010226|12175017|IMP  product ATRAB28  note ATRAB28; INVOLVED IN: multicellular organismal development, response to lithium ion, cellular ion homeostasis, seed germination; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: procambium; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: seed maturation family protein (TAIR:AT5G27980.1); Has 95 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G03120.1p  transcript_id AT1G03120.1  protein_id AT1G03120.1p  transcript_id AT1G03120.1  
At1g03130	chr1:000753528	0.0	C/753528-754142	AT1G03130.1 CDS  gene_syn PSAD-2, PSI-D, photosystem I subunit D-2  gene PSAD-2  function Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2)  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem I reaction center|GO:0009538||ISS  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSAD-2 (photosystem I subunit D-2)  note photosystem I subunit D-2 (PSAD-2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I protein PsaD (InterPro:IPR003685); BEST Arabidopsis thaliana protein match is: PSAD-1 (photosystem I subunit D-1) (TAIR:AT4G02770.1); Has 444 Blast hits to 444 proteins in 112 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 1; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G03130.1p  transcript_id AT1G03130.1  protein_id AT1G03130.1p  transcript_id AT1G03130.1  
At1g03140	chr1:000754471	0.0	C/754471-754890,755381-756223	AT1G03140.1 CDS  gene_syn F10O3.3, F10O3_3  go_component spliceosome|GO:0005681||IEA  go_process RNA splicing|GO:0008380||IEA  go_component spliceosome|GO:0005681||ISS  go_process RNA splicing|GO:0008380||ISS  product splicing factor Prp18 family protein  note splicing factor Prp18 family protein; INVOLVED IN: RNA splicing; LOCATED IN: spliceosome; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), Splicing factor motif (InterPro:IPR003648), Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: splicing factor Prp18 family protein (TAIR:AT1G54590.1); Has 509 Blast hits to 499 proteins in 150 species: Archae - 0; Bacteria - 4; Metazoa - 224; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G03140.1p  transcript_id AT1G03140.1  protein_id AT1G03140.1p  transcript_id AT1G03140.1  
At1g03150	chr1:000756461	0.0	W/756461-756538,756645-756735,757554-757686,757937-758006,758199-758259,758350-758441	AT1G03150.1 CDS  gene_syn F10O3.2, F10O3_2  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase, putative (TAIR:AT5G13780.1); Has 1587 Blast hits to 1587 proteins in 440 species: Archae - 135; Bacteria - 362; Metazoa - 485; Fungi - 260; Plants - 84; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink).  protein_id AT1G03150.1p  transcript_id AT1G03150.1  protein_id AT1G03150.1p  transcript_id AT1G03150.1  
At1g03160	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,763980-764066,764157-764597,764699-764866,765025-765255,765485-765600,765753-766053	AT1G03160.1 CDS  gene_syn F10O3.1, F10O3_1, FZL, FZO-LIKE  gene FZL  function A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTPase activity|GO:0003924||IEA  go_function thiamin-phosphate diphosphorylase activity|GO:0004789||IEA  go_function GTP binding|GO:0005525||IEA  go_component chloroplast membrane|GO:0031969|16617119|IDA  go_process thylakoid membrane organization|GO:0010027|16617119|IMP  go_process vegetative to reproductive phase transition|GO:0010228|16617119|IMP  product FZL (FZO-LIKE); GTP binding / GTPase/ thiamin-phosphate diphosphorylase  note FZO-LIKE (FZL); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, GTP binding, GTPase activity; INVOLVED IN: thylakoid membrane organization, vegetative to reproductive phase transition; LOCATED IN: chloroplast membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), Dynamin, GTPase region (InterPro:IPR001401); Has 2427 Blast hits to 2247 proteins in 614 species: Archae - 35; Bacteria - 1764; Metazoa - 373; Fungi - 57; Plants - 35; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G03160.1p  transcript_id AT1G03160.1  protein_id AT1G03160.1p  transcript_id AT1G03160.1  
At1g03160	chr1:000761321	0.0	W/761321-761810,761886-762391,762510-762578,763013-763210,763299-763430,763980-764066,764157-764597,764699-764931,765025-765091	AT1G03160.2 CDS  gene_syn F10O3.1, F10O3_1, FZL, FZO-LIKE  gene FZL  function A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.  go_component chloroplast|GO:0009507|18431481|IDA  go_function GTPase activity|GO:0003924||IEA  go_function thiamin-phosphate diphosphorylase activity|GO:0004789||IEA  go_function GTP binding|GO:0005525||IEA  go_component chloroplast membrane|GO:0031969|16617119|IDA  go_process thylakoid membrane organization|GO:0010027|16617119|IMP  go_process vegetative to reproductive phase transition|GO:0010228|16617119|IMP  product FZL (FZO-LIKE); GTP binding / GTPase/ thiamin-phosphate diphosphorylase  note FZO-LIKE (FZL); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, GTP binding, GTPase activity; INVOLVED IN: thylakoid membrane organization, vegetative to reproductive phase transition; LOCATED IN: chloroplast membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), Dynamin, GTPase region (InterPro:IPR001401); Has 2432 Blast hits to 2250 proteins in 614 species: Archae - 35; Bacteria - 1770; Metazoa - 373; Fungi - 57; Plants - 34; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G03160.2p  transcript_id AT1G03160.2  protein_id AT1G03160.2p  transcript_id AT1G03160.2  
At1g03170	chr1:000769805	0.0	W/769805-770527	AT1G03170.1 CDS  gene_syn F15K9.22, F15K9_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02810.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03170.1p  transcript_id AT1G03170.1  protein_id AT1G03170.1p  transcript_id AT1G03170.1  
At1g03180	chr1:000773543	0.0	W/773543-773691,774096-774153,774231-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.1 CDS  gene_syn F15K9.21, F15K9_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03180.1p  transcript_id AT1G03180.1  protein_id AT1G03180.1p  transcript_id AT1G03180.1  
At1g03180	chr1:000773989	0.0	W/773989-774153,774231-774539,774652-774700,774785-774879,774968-775047,775122-775179	AT1G03180.2 CDS  gene_syn F15K9.21, F15K9_21  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03180.2p  transcript_id AT1G03180.2  protein_id AT1G03180.2p  transcript_id AT1G03180.2  
At1g03190	chr1:000775822	0.0	W/775822-776355,776482-776762,777155-777237,777336-777739,777872-778065,778153-778333,778486-778610,778807-778896,779002-779080,779174-779250,779538-779646,779744-779863	AT1G03190.1 CDS  gene_syn ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, ATXPD, ULTRAVIOLET HYPERSENSITIVE 6, UVH6  gene UVH6  function UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response.  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_process DNA repair|GO:0006281|12857822|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to heat|GO:0009408|9414549|IMP  go_process response to UV|GO:0009411|9414549|IMP  product UVH6 (ULTRAVIOLET HYPERSENSITIVE 6); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding  note ULTRAVIOLET HYPERSENSITIVE 6 (UVH6); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to UV, DNA repair, response to heat; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helicase, superfamily 1 and 2, ATP-binding, DinG/Rad3-type (InterPro:IPR014013), Xeroderma pigmentosum group D protein (InterPro:IPR001945), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Protein of unknown function DUF1227 (InterPro:IPR010643); BEST Arabidopsis thaliana protein match is: helicase-related (TAIR:AT1G79950.1); Has 2121 Blast hits to 1696 proteins in 465 species: Archae - 180; Bacteria - 586; Metazoa - 533; Fungi - 241; Plants - 97; Viruses - 2; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT1G03190.1p  transcript_id AT1G03190.1  protein_id AT1G03190.1p  transcript_id AT1G03190.1  
At1g03190	chr1:000775822	0.0	W/775822-776355,776482-776762,777155-777237,777336-777739,777872-778065,778153-778333,778486-778610,778807-778896,779002-779080,779174-779250,779538-779646,779744-779863	AT1G03190.2 CDS  gene_syn ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, ATXPD, ULTRAVIOLET HYPERSENSITIVE 6, UVH6  gene UVH6  function UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response.  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_process DNA repair|GO:0006281|12857822|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to heat|GO:0009408|9414549|IMP  go_process response to UV|GO:0009411|9414549|IMP  product UVH6 (ULTRAVIOLET HYPERSENSITIVE 6); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding  note ULTRAVIOLET HYPERSENSITIVE 6 (UVH6); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to UV, DNA repair, response to heat; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helicase, superfamily 1 and 2, ATP-binding, DinG/Rad3-type (InterPro:IPR014013), Xeroderma pigmentosum group D protein (InterPro:IPR001945), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Protein of unknown function DUF1227 (InterPro:IPR010643); BEST Arabidopsis thaliana protein match is: helicase-related (TAIR:AT1G79950.1); Has 2121 Blast hits to 1696 proteins in 465 species: Archae - 180; Bacteria - 586; Metazoa - 533; Fungi - 241; Plants - 97; Viruses - 2; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT1G03190.2p  transcript_id AT1G03190.2  protein_id AT1G03190.2p  transcript_id AT1G03190.2  
At1g03200	chr1:000780755	0.0	W/780755-780836,781081-781124	AT1G03200.1 CDS  gene_syn F15K9.24, F15K9_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03240.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03200.1p  transcript_id AT1G03200.1  protein_id AT1G03200.1p  transcript_id AT1G03200.1  
At1g03210	chr1:000782948	0.0	W/782948-783175,783318-783596,783681-783842,783943-784026,784133-784240	AT1G03210.1 CDS  gene_syn F15K9.19, F15K9_19  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function catalytic activity|GO:0003824||ISS  product phenazine biosynthesis PhzC/PhzF family protein  note phenazine biosynthesis PhzC/PhzF family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT4G02860.1); Has 2445 Blast hits to 2445 proteins in 666 species: Archae - 26; Bacteria - 1600; Metazoa - 99; Fungi - 79; Plants - 43; Viruses - 0; Other Eukaryotes - 598 (source: NCBI BLink).  protein_id AT1G03210.1p  transcript_id AT1G03210.1  protein_id AT1G03210.1p  transcript_id AT1G03210.1  
At1g03220	chr1:000787143	0.0	W/787143-788444	AT1G03220.1 CDS  gene_syn F15K9.17, F15K9_17  go_component cell wall|GO:0005618|14595688|IDA  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  product extracellular dermal glycoprotein, putative / EDGP, putative  note extracellular dermal glycoprotein, putative / EDGP, putative; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: cell wall, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: stem, root, callus, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: extracellular dermal glycoprotein, putative / EDGP, putative (TAIR:AT1G03230.1); Has 790 Blast hits to 787 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 790; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03220.1p  transcript_id AT1G03220.1  protein_id AT1G03220.1p  transcript_id AT1G03220.1  
At1g03230	chr1:000790110	0.0	W/790110-791414	AT1G03230.1 CDS  gene_syn F15K9.16, F15K9_16  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product extracellular dermal glycoprotein, putative / EDGP, putative  note extracellular dermal glycoprotein, putative / EDGP, putative; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: extracellular dermal glycoprotein, putative / EDGP, putative (TAIR:AT1G03220.1); Has 798 Blast hits to 797 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 798; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03230.1p  transcript_id AT1G03230.1  protein_id AT1G03230.1p  transcript_id AT1G03230.1  
At1g03240	chr1:000792418	0.0	C/792418-792461,792754-792838	AT1G03240.1 CDS  gene_syn F15K9.25, F15K9_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03200.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03240.1p  transcript_id AT1G03240.1  protein_id AT1G03240.1p  transcript_id AT1G03240.1  
At1g03250	chr1:000793576	0.0	C/793576-793731,793829-793930,794022-794180,794328-794410,794542-794650,794899-794969,795102-795159	AT1G03250.1 CDS  gene_syn F15K9.15, F15K9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 65 Blast hits to 65 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G03250.1p  transcript_id AT1G03250.1  protein_id AT1G03250.1p  transcript_id AT1G03250.1  
At1g03260	chr1:000795678	0.0	C/795678-795856,795988-796018,796536-796628,796776-796892,797041-797127,797313-797411,797546-797600,797728-797789,798001-798102	AT1G03260.1 CDS  gene_syn F15K9.14, F15K9_14  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19070.1); Has 3432 Blast hits to 3432 proteins in 730 species: Archae - 8; Bacteria - 1831; Metazoa - 239; Fungi - 87; Plants - 162; Viruses - 0; Other Eukaryotes - 1105 (source: NCBI BLink).  protein_id AT1G03260.1p  transcript_id AT1G03260.1  protein_id AT1G03260.1p  transcript_id AT1G03260.1  
At1g03270	chr1:000799191	0.0	W/799191-799431,799641-799717,799827-799910,799999-800112,800382-800465,800629-800700,800972-801039,801185-801272,801356-801429,801517-801889,802012-802058,802163-802223,802320-802436	AT1G03270.1 CDS  gene_syn F15K9.13, F15K9_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14240.1); Has 6515 Blast hits to 6357 proteins in 1347 species: Archae - 64; Bacteria - 4189; Metazoa - 291; Fungi - 188; Plants - 123; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink).  protein_id AT1G03270.1p  transcript_id AT1G03270.1  protein_id AT1G03270.1p  transcript_id AT1G03270.1  
At1g03280	chr1:000803635	0.0	W/803635-803687,803835-803957,804247-804367,804739-804852,804961-805070,805167-805350,805458-805652,805860-806087,806196-806409,806661-806758	AT1G03280.1 CDS  gene_syn F15K9.12, F15K9_12  go_component transcription factor TFIIE complex|GO:0005673||IEA  go_component endomembrane system|GO:0012505||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_component transcription factor TFIIE complex|GO:0005673||ISS  go_function transcription initiation factor activity|GO:0016986||ISS  product transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein  note transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT4G20340.1); Has 683 Blast hits to 606 proteins in 133 species: Archae - 3; Bacteria - 10; Metazoa - 347; Fungi - 130; Plants - 70; Viruses - 11; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G03280.1p  transcript_id AT1G03280.1  protein_id AT1G03280.1p  transcript_id AT1G03280.1  
At1g03290	chr1:000807970	0.0	W/807970-808017,808229-808394,808532-809214,809409-809582,809672-809788,809911-810090,810188-810234,810380-810680	AT1G03290.1 CDS  gene_syn F15K9.11, F15K9_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.1); Has 10945 Blast hits to 7852 proteins in 686 species: Archae - 147; Bacteria - 1290; Metazoa - 5004; Fungi - 733; Plants - 317; Viruses - 53; Other Eukaryotes - 3401 (source: NCBI BLink).  protein_id AT1G03290.1p  transcript_id AT1G03290.1  protein_id AT1G03290.1p  transcript_id AT1G03290.1  
At1g03300	chr1:000811033	0.0	C/811033-811988,812030-813086	AT1G03300.1 CDS  gene_syn F15K9.10, F15K9_10  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT2G47230.1); Has 474 Blast hits to 388 proteins in 75 species: Archae - 2; Bacteria - 18; Metazoa - 141; Fungi - 31; Plants - 145; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G03300.1p  transcript_id AT1G03300.1  protein_id AT1G03300.1p  transcript_id AT1G03300.1  
At1g03310	chr1:000813975	0.0	W/813975-816623	AT1G03310.1 CDS  gene_syn ARABIDOPSIS THALIANA ISOAMYLASE 2, ATISA2, BE2, BRANCHING ENZYME 2, DBE1, DEBRANCHING ENZYME 1, F15K9.9, F15K9_9, ISA2  gene DBE1  function Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process amylopectin biosynthetic process|GO:0010021|18815382|IMP  go_function alpha-amylase activity|GO:0004556||ISS  go_function isoamylase activity|GO:0019156|15743447|IMP  go_function isoamylase activity|GO:0019156|18815382|IDA  product isoamylase, putative / starch debranching enzyme, putative  note DEBRANCHING ENZYME 1 (DBE1); FUNCTIONS IN: isoamylase activity, alpha-amylase activity; INVOLVED IN: amylopectin biosynthetic process, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase (TAIR:AT4G09020.1); Has 5747 Blast hits to 5734 proteins in 1167 species: Archae - 59; Bacteria - 4326; Metazoa - 119; Fungi - 138; Plants - 353; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink).  protein_id AT1G03310.1p  transcript_id AT1G03310.1  protein_id AT1G03310.1p  transcript_id AT1G03310.1  
At1g03310	chr1:000813975	0.0	W/813975-816623	AT1G03310.2 CDS  gene_syn ARABIDOPSIS THALIANA ISOAMYLASE 2, ATISA2, BE2, BRANCHING ENZYME 2, DBE1, DEBRANCHING ENZYME 1, F15K9.9, F15K9_9, ISA2  gene DBE1  function Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_process amylopectin biosynthetic process|GO:0010021|18815382|IMP  go_function alpha-amylase activity|GO:0004556||ISS  go_function isoamylase activity|GO:0019156|15743447|IMP  go_function isoamylase activity|GO:0019156|18815382|IDA  product isoamylase, putative / starch debranching enzyme, putative  note DEBRANCHING ENZYME 1 (DBE1); FUNCTIONS IN: isoamylase activity, alpha-amylase activity; INVOLVED IN: amylopectin biosynthetic process, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic region (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: ISA3 (ISOAMYLASE 3); alpha-amylase/ isoamylase (TAIR:AT4G09020.1); Has 5747 Blast hits to 5734 proteins in 1167 species: Archae - 59; Bacteria - 4326; Metazoa - 119; Fungi - 138; Plants - 353; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink).  protein_id AT1G03310.2p  transcript_id AT1G03310.2  protein_id AT1G03310.2p  transcript_id AT1G03310.2  
At1g03320	chr1:000817027	0.0	W/817027-817096,817175-817767	AT1G03320.1 CDS  gene_syn F15K9.8, F15K9_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1133 Blast hits to 723 proteins in 102 species: Archae - 4; Bacteria - 14; Metazoa - 406; Fungi - 130; Plants - 78; Viruses - 8; Other Eukaryotes - 493 (source: NCBI BLink).  protein_id AT1G03320.1p  transcript_id AT1G03320.1  protein_id AT1G03320.1p  transcript_id AT1G03320.1  
At1g03330	chr1:000818161	0.0	C/818161-818280,818920-819078,819295-819297	AT1G03330.1 CDS  gene_syn F15K9.7, F15K9_7  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative  note small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), U6 snRNA-associated Sm-like protein LSm2 (InterPro:IPR016654), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649); Has 577 Blast hits to 577 proteins in 157 species: Archae - 2; Bacteria - 0; Metazoa - 264; Fungi - 157; Plants - 51; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT1G03330.1p  transcript_id AT1G03330.1  protein_id AT1G03330.1p  transcript_id AT1G03330.1  
At1g03340	chr1:000819712	0.0	W/819712-819783,819897-820077,820159-820501,820595-820666,820738-821227	AT1G03340.1 CDS  gene_syn F15K9.6, F15K9_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02920.1); Has 23 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03340.1p  transcript_id AT1G03340.1  protein_id AT1G03340.1p  transcript_id AT1G03340.1  
At1g03350	chr1:000822834	0.0	C/822834-824246	AT1G03350.1 CDS  gene_syn F15K9.5, F15K9_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT4G13110.1); Has 9675 Blast hits to 5119 proteins in 484 species: Archae - 40; Bacteria - 3294; Metazoa - 2852; Fungi - 1070; Plants - 279; Viruses - 71; Other Eukaryotes - 2069 (source: NCBI BLink).  protein_id AT1G03350.1p  transcript_id AT1G03350.1  protein_id AT1G03350.1p  transcript_id AT1G03350.1  
At1g03360	chr1:000824653	0.0	W/824653-824813,824891-824992,825102-825147,825253-825342,825422-825487,825587-825655,825745-826179	AT1G03360.1 CDS  gene_syn ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4, ATRRP4, F15K9.4, F15K9_4  gene ATRRP4  go_component mitochondrion|GO:0005739||IEA  go_function RNA binding|GO:0003723||IEA  go_function exonuclease activity|GO:0004527||ISS  product ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4); RNA binding / exonuclease  note ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4 (ATRRP4); FUNCTIONS IN: RNA binding, exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), S1, RNA binding (InterPro:IPR003029); Has 443 Blast hits to 443 proteins in 204 species: Archae - 97; Bacteria - 0; Metazoa - 111; Fungi - 87; Plants - 23; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G03360.1p  transcript_id AT1G03360.1  protein_id AT1G03360.1p  transcript_id AT1G03360.1  
At1g03370	chr1:000827182	0.0	W/827182-829182,829721-830187,830958-831313,831420-832640,832753-832935,833084-833367,833415-833570,833694-833956,834254-834419,834514-834996	AT1G03370.1 CDS  gene_syn F15K9.2, F15K9_2  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), GRAM (InterPro:IPR004182), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G03000.2); Has 36666 Blast hits to 23729 proteins in 1173 species: Archae - 306; Bacteria - 2687; Metazoa - 20823; Fungi - 2509; Plants - 2020; Viruses - 91; Other Eukaryotes - 8230 (source: NCBI BLink).  protein_id AT1G03370.1p  transcript_id AT1G03370.1  protein_id AT1G03370.1p  transcript_id AT1G03370.1  
At1g03380	chr1:000836155	0.0	W/836155-836328,836769-837233,837471-837908,838069-838314,838400-839227,839312-839469,839678-839805,839920-840362	AT1G03380.1 CDS  gene_syn ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 (ATG18) G, ATATG18G, F21B7.1  gene ATATG18G  go_process response to starvation|GO:0042594|15860012|IEP  go_function molecular_function|GO:0003674||ND  product AtATG18g  note AtATG18g; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: AtATG18h (TAIR:AT1G54710.1); Has 249 Blast hits to 247 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 28; Plants - 35; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G03380.1p  transcript_id AT1G03380.1  protein_id AT1G03380.1p  transcript_id AT1G03380.1  
At1g03390	chr1:000841033	0.0	C/841033-842418	AT1G03390.1 CDS  gene_syn F21B7.2, F21B7_2  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G41040.2); Has 1310 Blast hits to 1295 proteins in 110 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 33; Plants - 1275; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03390.1p  transcript_id AT1G03390.1  protein_id AT1G03390.1p  transcript_id AT1G03390.1  
At1g03400	chr1:000842895	0.0	C/842895-843146,843231-843552,843677-844158	AT1G03400.1 CDS  gene_syn F21B7.39, F21B7_39  function A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|7579161|ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2A6; oxidoreductase (TAIR:AT1G03410.1); Has 5645 Blast hits to 5635 proteins in 687 species: Archae - 0; Bacteria - 718; Metazoa - 123; Fungi - 544; Plants - 3050; Viruses - 0; Other Eukaryotes - 1210 (source: NCBI BLink).  protein_id AT1G03400.1p  transcript_id AT1G03400.1  protein_id AT1G03400.1p  transcript_id AT1G03400.1  
At1g03410	chr1:000844782	0.0	C/844782-845033,845114-845435,845952-846574	AT1G03410.1 CDS  gene_syn 2A6, F21B7.3  gene 2A6  go_component endomembrane system|GO:0012505||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product 2A6; oxidoreductase  note 2A6; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G03400.1); Has 5739 Blast hits to 5722 proteins in 684 species: Archae - 0; Bacteria - 723; Metazoa - 121; Fungi - 564; Plants - 3066; Viruses - 0; Other Eukaryotes - 1265 (source: NCBI BLink).  protein_id AT1G03410.1p  transcript_id AT1G03410.1  protein_id AT1G03410.1p  transcript_id AT1G03410.1  
At1g03420	chr1:000846664	0.0	W/846664-847739	AT1G03420.1 mRNA_TE_gene  pseudo  gene_syn F21B7.4, F21B7_4, SADHU NON-CODING RETROTRANSPOSON, Sadhu4-2  gene Sadhu4-2  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At1g03430	chr1:000848159	0.0	W/848159-848227,848367-848497,848642-848713,848808-848879,848998-849070,849179-849235	AT1G03430.1 CDS  gene_syn AHP5, F21B7.5, HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5  gene AHP5  function Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).  go_component nucleus|GO:0005634|17122069|IDA  go_component cytoplasm|GO:0005737|17122069|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|11828030|TAS  go_process cytokinin mediated signaling|GO:0009736|17122069|IGI  go_process cytokinin mediated signaling|GO:0009736|17122069|IMP  go_function histidine phosphotransfer kinase activity|GO:0009927|10050311|IDA  go_function histidine phosphotransfer kinase activity|GO:0009927|11193423|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927|17122069|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927|9804162|IDA  product AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase  note HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5 (AHP5); FUNCTIONS IN: histidine phosphotransfer kinase activity; INVOLVED IN: cytokinin mediated signaling, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) region (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ protein binding / signal transducer (TAIR:AT3G29350.1); Has 170 Blast hits to 169 proteins in 32 species: Archae - 2; Bacteria - 20; Metazoa - 0; Fungi - 8; Plants - 138; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G03430.1p  transcript_id AT1G03430.1  protein_id AT1G03430.1p  transcript_id AT1G03430.1  
At1g03440	chr1:000852681	0.0	W/852681-853874	AT1G03440.1 CDS  gene_syn F21B7.6, F21B7_6  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G03010.1); Has 30989 Blast hits to 11581 proteins in 598 species: Archae - 15; Bacteria - 1130; Metazoa - 5265; Fungi - 242; Plants - 22372; Viruses - 0; Other Eukaryotes - 1965 (source: NCBI BLink).  protein_id AT1G03440.1p  transcript_id AT1G03440.1  protein_id AT1G03440.1p  transcript_id AT1G03440.1  
At1g03445	chr1:000854653	0.0	C/854653-854706,854803-854933,855031-855166,855255-855330,855405-855601,855688-855786,855859-855943,856056-856294,856370-856444,856540-856651,856759-856840,857013-857093,857279-857437,857547-857628,857704-857799,857971-858040,858120-858216,858599-858693,858777-858850,859001-859079,859232-859292,859398-859599	AT1G03445.1 CDS  gene_syn BRI1 SUPPRESSOR 1, BSU1, F21B7.7  gene BSU1  function encodes a serine threonine protein phosphatase with an N-terminal Kelch-repeat domain, which is nuclear localized and expressed preferentially in elongating cells. Genetic evidence suggest that this gene plays a redundant role (along with other members of the same gene family) in modulating growth in response to brassinosteroid.  go_component nucleus|GO:0005634|14977918|IDA  go_process brassinosteroid mediated signaling|GO:0009742|14977918|IGI  go_process regulation of protein localization|GO:0032880|17873094|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722|14977918|IDA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product BSU1 (BRI1 SUPPRESSOR 1); protein serine/threonine phosphatase  note BRI1 SUPPRESSOR 1 (BSU1); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: brassinosteroid mediated signaling, regulation of protein localization; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Metallophosphoesterase (InterPro:IPR004843), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Serine/threonine protein phosphatase, BSU1 (InterPro:IPR012391), Kelch-type beta propeller (InterPro:IPR015915), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: kelch repeat-containing serine/threonine phosphoesterase family protein (TAIR:AT4G03080.1); Has 9074 Blast hits to 7377 proteins in 465 species: Archae - 53; Bacteria - 346; Metazoa - 3602; Fungi - 1433; Plants - 1307; Viruses - 7; Other Eukaryotes - 2326 (source: NCBI BLink).  protein_id AT1G03445.1p  transcript_id AT1G03445.1  protein_id AT1G03445.1p  transcript_id AT1G03445.1  
At1g03457	chr1:000861109	0.0	C/861109-861278,861368-861511,861606-861909,862042-862212,862314-862393,862488-862613,862753-862804,863459-863541,863860-864019	AT1G03457.1 CDS  gene_syn F21B7.8  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT4G03110.1); Has 22287 Blast hits to 12792 proteins in 586 species: Archae - 14; Bacteria - 958; Metazoa - 13562; Fungi - 2206; Plants - 3077; Viruses - 0; Other Eukaryotes - 2470 (source: NCBI BLink).  protein_id AT1G03457.1p  transcript_id AT1G03457.1  protein_id AT1G03457.1p  transcript_id AT1G03457.1  
At1g03457	chr1:000861109	0.0	C/861109-861278,861368-861511,861606-861909,862042-862212,862314-862393,862488-862640,862753-862804,863459-863541,863860-864019	AT1G03457.2 CDS  gene_syn F21B7.8  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA-binding protein, putative  note RNA-binding protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343); BEST Arabidopsis thaliana protein match is: RNA-binding protein, putative (TAIR:AT4G03110.1); Has 21968 Blast hits to 12589 proteins in 581 species: Archae - 14; Bacteria - 954; Metazoa - 13308; Fungi - 2195; Plants - 3046; Viruses - 0; Other Eukaryotes - 2451 (source: NCBI BLink).  protein_id AT1G03457.2p  transcript_id AT1G03457.2  protein_id AT1G03457.2p  transcript_id AT1G03457.2  
At1g03470	chr1:000866217	0.0	C/866217-866941,867409-867493	AT1G03470.1 CDS  gene_syn F21B7.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase interacting family protein  note kinase interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT2G47920.1); Has 483 Blast hits to 464 proteins in 82 species: Archae - 6; Bacteria - 7; Metazoa - 113; Fungi - 35; Plants - 165; Viruses - 3; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G03470.1p  transcript_id AT1G03470.1  protein_id AT1G03470.1p  transcript_id AT1G03470.1  
At1g03470	chr1:000866217	0.0	C/866217-866941,867409-867493	AT1G03470.2 CDS  gene_syn F21B7.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase interacting family protein  note kinase interacting family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT2G47920.1); Has 483 Blast hits to 464 proteins in 82 species: Archae - 6; Bacteria - 7; Metazoa - 113; Fungi - 35; Plants - 165; Viruses - 3; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G03470.2p  transcript_id AT1G03470.2  protein_id AT1G03470.2p  transcript_id AT1G03470.2  
At1g03475	chr1:000869302	0.0	C/869302-869370,869454-869552,869658-869782,869875-869962,870144-870227,870313-870407,870496-870571,870651-871175	AT1G03475.1 CDS  gene_syn ATCPO-I, COPROPORPHYRINOGEN III OXIDASE, CPO, F21B7.10, HEMF1, LESION INITIATION 2, LIN2  gene LIN2  function Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component plastid|GO:0009536||IDA  go_process tetrapyrrole biosynthetic process|GO:0033014||IC  go_function coproporphyrinogen oxidase activity|GO:0004109||IGI  go_function coproporphyrinogen oxidase activity|GO:0004109||ISS  product LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase  note LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative (TAIR:AT4G03205.2); Has 3949 Blast hits to 3945 proteins in 816 species: Archae - 0; Bacteria - 1345; Metazoa - 96; Fungi - 104; Plants - 57; Viruses - 0; Other Eukaryotes - 2347 (source: NCBI BLink).  protein_id AT1G03475.1p  transcript_id AT1G03475.1  protein_id AT1G03475.1p  transcript_id AT1G03475.1  
At1g03490	chr1:000871874	0.0	W/871874-872212,872292-872393,872445-872682,872740-872906	AT1G03490.1 CDS  gene_syn ANAC006, Arabidopsis NAC domain containing protein 6, F21B7.11  gene ANAC006  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC006 (Arabidopsis NAC domain containing protein 6); transcription factor  note Arabidopsis NAC domain containing protein 6 (ANAC006); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G19040.1); Has 1670 Blast hits to 1106 proteins in 103 species: Archae - 0; Bacteria - 24; Metazoa - 527; Fungi - 24; Plants - 556; Viruses - 101; Other Eukaryotes - 438 (source: NCBI BLink).  protein_id AT1G03490.1p  transcript_id AT1G03490.1  protein_id AT1G03490.1p  transcript_id AT1G03490.1  
At1g03495	chr1:000873436	0.0	W/873436-874832	AT1G03495.1 CDS  gene_syn F21B7.12  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase/ transferase, transferring acyl groups other than amino-acyl groups  note transferase/ transferase, transferring acyl groups other than amino-acyl groups; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT1G03940.1); Has 988 Blast hits to 979 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 975; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03495.1p  transcript_id AT1G03495.1  protein_id AT1G03495.1p  transcript_id AT1G03495.1  
At1g03502	chr1:000875358	0.0	C/875358-875471	AT1G03502.1 snoRNA  gene_syn 50828.SNORNA00002  function small nucleolar RNA  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G03502.1  
At1g03506	chr1:000875518	0.0	C/875518-875604	AT1G03506.1 snoRNA  gene_syn 50828.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G03506.1  
At1g03510	chr1:000876258	0.0	C/876258-877547	AT1G03510.1 CDS  gene_syn F21B7.13  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G20540.1); Has 12275 Blast hits to 4796 proteins in 128 species: Archae - 0; Bacteria - 28; Metazoa - 52; Fungi - 52; Plants - 11925; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G03510.1p  transcript_id AT1G03510.1  protein_id AT1G03510.1p  transcript_id AT1G03510.1  
At1g03515	chr1:000877648	0.0	W/877648-877719	AT1G03515.1 tRNA  gene_syn 50828.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G03515.1  
At1g03520	chr1:000877948	0.0	C/877948-878456,878540-878655,878735-878810,878911-879286	AT1G03520.2 CDS  gene_syn F21B7.14  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT4G03340.1); Has 691 Blast hits to 688 proteins in 86 species: Archae - 0; Bacteria - 14; Metazoa - 462; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G03520.2p  transcript_id AT1G03520.2  protein_id AT1G03520.2p  transcript_id AT1G03520.2  
At1g03520	chr1:000877948	0.0	C/877948-878456,878540-878655,878735-878810,878911-879553	AT1G03520.1 CDS  gene_syn F21B7.14  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein  note glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406); BEST Arabidopsis thaliana protein match is: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (TAIR:AT4G03340.1); Has 691 Blast hits to 688 proteins in 86 species: Archae - 0; Bacteria - 14; Metazoa - 462; Fungi - 0; Plants - 190; Viruses - 14; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G03520.1p  transcript_id AT1G03520.1  protein_id AT1G03520.1p  transcript_id AT1G03520.1  
At1g03530	chr1:000880638	0.0	C/880638-881876,881978-882055,882250-883338	AT1G03530.1 CDS  gene_syn ATNAF1, F21B7.15, NAF1, NUCLEAR ASSEMBLY FACTOR 1  gene NAF1  go_process biological_process|GO:0008150||ND  product NAF1 (NUCLEAR ASSEMBLY FACTOR 1)  note NUCLEAR ASSEMBLY FACTOR 1 (NAF1); INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAF1 (InterPro:IPR008696); Has 52447 Blast hits to 27785 proteins in 1193 species: Archae - 268; Bacteria - 8558; Metazoa - 17671; Fungi - 7717; Plants - 3404; Viruses - 822; Other Eukaryotes - 14007 (source: NCBI BLink).  protein_id AT1G03530.1p  transcript_id AT1G03530.1  protein_id AT1G03530.1p  transcript_id AT1G03530.1  
At1g03540	chr1:000883782	0.0	W/883782-885611	AT1G03540.1 CDS  gene_syn F21B7.16  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G13600.1); Has 15175 Blast hits to 5044 proteins in 136 species: Archae - 0; Bacteria - 3; Metazoa - 61; Fungi - 63; Plants - 14719; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G03540.1p  transcript_id AT1G03540.1  protein_id AT1G03540.1p  transcript_id AT1G03540.1  
At1g03550	chr1:000885851	0.0	C/885851-885937,886035-886100,886196-886244,886393-886460,886554-886599,886696-886789,886878-886940,887015-887137,887225-887258,887368-887430,887531-887635,887725-887778	AT1G03550.1 CDS  gene_syn F21B7.17, F21B7_17  go_component integral to membrane|GO:0016021||IEA  go_process protein transport|GO:0015031||IEA  go_function transmembrane transporter activity|GO:0022857||ISS  product secretory carrier membrane protein (SCAMP) family protein  note secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1); Has 516 Blast hits to 516 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 12; Plants - 121; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G03550.1p  transcript_id AT1G03550.1  protein_id AT1G03550.1p  transcript_id AT1G03550.1  
At1g03560	chr1:000890428	0.0	C/890428-892410	AT1G03560.1 CDS  gene_syn F21B7.18  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 22539 Blast hits to 6065 proteins in 191 species: Archae - 3; Bacteria - 41; Metazoa - 565; Fungi - 536; Plants - 20393; Viruses - 0; Other Eukaryotes - 1001 (source: NCBI BLink).  protein_id AT1G03560.1p  transcript_id AT1G03560.1  protein_id AT1G03560.1p  transcript_id AT1G03560.1  
At1g03570	chr1:000892514	0.0	W/892514-892585	AT1G03570.1 tRNA  gene_syn 50828.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: CTG)  transcript_id AT1G03570.1  
At1g03580	chr1:000892847	0.0	W/892847-894052	AT1G03580.1 pseudogenic_transcript  pseudo  note pseudogene, meprin and TRAF homology (MATH) domain protein -related, weak similarity to ubiquitin-specific protease 12 (Arabidopsis thaliana) GI:11993471; contains weak hit to Pfam PF00917: MATH domain  
At1g03590	chr1:000894480	0.0	C/894480-894944,895030-895253,895355-895472,895583-895921,896015-896257	AT1G03590.1 CDS  gene_syn F21B7.20  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product catalytic/ protein serine/threonine phosphatase  note catalytic/ protein serine/threonine phosphatase; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: catalytic/ protein serine/threonine phosphatase (TAIR:AT4G03415.1); Has 3866 Blast hits to 3864 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 1197; Fungi - 465; Plants - 1287; Viruses - 5; Other Eukaryotes - 912 (source: NCBI BLink).  protein_id AT1G03590.1p  transcript_id AT1G03590.1  protein_id AT1G03590.1p  transcript_id AT1G03590.1  
At1g03600	chr1:000898916	0.0	W/898916-899440	AT1G03600.1 CDS  gene_syn F21B7.21  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast photosystem II|GO:0030095||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product photosystem II family protein  note photosystem II family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 218 Blast hits to 218 proteins in 63 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G03600.1p  transcript_id AT1G03600.1  protein_id AT1G03600.1p  transcript_id AT1G03600.1  
At1g03610	chr1:000901304	0.0	W/901304-901396,901486-901706,901891-902077,902170-902347,902425-902672	AT1G03610.1 CDS  gene_syn F21B7.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03420.1); Has 147 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G03610.1p  transcript_id AT1G03610.1  protein_id AT1G03610.1p  transcript_id AT1G03610.1  
At1g03620	chr1:000904319	0.0	C/904319-904420,904521-904615,904728-904775,904881-905004,905119-905173,905268-905383,905497-905565,905667-905784,905943-906013	AT1G03620.1 CDS  gene_syn F21B7.23  go_component cytoskeleton|GO:0005856||IEA  go_process phagocytosis|GO:0006909||IEA  go_function molecular_function|GO:0003674||ND  product phagocytosis and cell motility protein ELMO1-related  note phagocytosis and cell motility protein ELMO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment and cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: phagocytosis and cell motility protein ELMO1-related (TAIR:AT3G03610.1); Has 640 Blast hits to 640 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 428; Fungi - 27; Plants - 109; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT1G03620.1p  transcript_id AT1G03620.1  protein_id AT1G03620.1p  transcript_id AT1G03620.1  
At1g03630	chr1:000907699	0.0	W/907699-907755,907849-907947,908033-908570,908655-909010,909090-909245	AT1G03630.1 CDS  gene_syn F21B7.24, NADPH:PROTOCHLOROPHYLLIDE OXIDOREDUCTASE, POR C, PORC, PROTOCHLOROPHYLLIDE OXIDOREDUCTASE  gene POR C  function Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|8624514|NAS  go_process chlorophyll biosynthetic process|GO:0015995|10838072|TAS  go_function NADPH dehydrogenase activity|GO:0003959|11785941|IDA  go_function oxidoreductase activity|GO:0016491||ISS  go_function protochlorophyllide reductase activity|GO:0016630|11785941|IDA  product POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase  note PROTOCHLOROPHYLLIDE OXIDOREDUCTASE (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: PORA; oxidoreductase/ protochlorophyllide reductase (TAIR:AT5G54190.1); Has 14392 Blast hits to 14373 proteins in 1320 species: Archae - 117; Bacteria - 6826; Metazoa - 1625; Fungi - 1207; Plants - 577; Viruses - 0; Other Eukaryotes - 4040 (source: NCBI BLink).  protein_id AT1G03630.1p  transcript_id AT1G03630.1  protein_id AT1G03630.1p  transcript_id AT1G03630.1  
At1g03630	chr1:000907699	0.0	W/907699-907755,907849-907947,908039-908570,908655-909010,909090-909245	AT1G03630.2 CDS  gene_syn F21B7.24, NADPH:PROTOCHLOROPHYLLIDE OXIDOREDUCTASE, POR C, PORC, PROTOCHLOROPHYLLIDE OXIDOREDUCTASE  gene POR C  function Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|8624514|NAS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process chlorophyll biosynthetic process|GO:0015995|10838072|TAS  go_function NADPH dehydrogenase activity|GO:0003959|11785941|IDA  go_function oxidoreductase activity|GO:0016491||ISS  go_function protochlorophyllide reductase activity|GO:0016630|11785941|IDA  product POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase  note PROTOCHLOROPHYLLIDE OXIDOREDUCTASE (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: PORA; oxidoreductase/ protochlorophyllide reductase (TAIR:AT5G54190.1); Has 14378 Blast hits to 14359 proteins in 1319 species: Archae - 117; Bacteria - 6816; Metazoa - 1625; Fungi - 1206; Plants - 575; Viruses - 0; Other Eukaryotes - 4039 (source: NCBI BLink).  protein_id AT1G03630.2p  transcript_id AT1G03630.2  protein_id AT1G03630.2p  transcript_id AT1G03630.2  
At1g03640	chr1:000909811	0.0	C/909811-909883	AT1G03640.1 tRNA  gene_syn 50828.TRNA-PHE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Phe (anticodon: GAA)  transcript_id AT1G03640.1  
At1g03650	chr1:000910249	0.0	C/910249-910481,910860-911103	AT1G03650.1 CDS  gene_syn F21B7.25  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 1907 Blast hits to 1907 proteins in 687 species: Archae - 132; Bacteria - 1082; Metazoa - 181; Fungi - 133; Plants - 50; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G03650.1p  transcript_id AT1G03650.1  protein_id AT1G03650.1p  transcript_id AT1G03650.1  
At1g03660	chr1:000911436	0.0	C/911436-911759	AT1G03660.1 CDS  gene_syn F21B7.26, F21B7_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G03670.1); Has 53 Blast hits to 53 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03660.1p  transcript_id AT1G03660.1  protein_id AT1G03660.1p  transcript_id AT1G03660.1  
At1g03670	chr1:000914222	0.0	C/914222-914839,914909-915456,915538-916222	AT1G03670.1 CDS  gene_syn F21B7.27  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G03500.1); Has 31922 Blast hits to 13861 proteins in 487 species: Archae - 21; Bacteria - 1646; Metazoa - 17487; Fungi - 2073; Plants - 1702; Viruses - 203; Other Eukaryotes - 8790 (source: NCBI BLink).  protein_id AT1G03670.1p  transcript_id AT1G03670.1  protein_id AT1G03670.1p  transcript_id AT1G03670.1  
At1g03680	chr1:000916990	0.0	C/916990-917303,917640-917865	AT1G03680.1 CDS  gene_syn ABC TRANSPORTER OF THE MITOCHONDRION, ARABIDOPSIS THIOREDOXIN M-TYPE 1, ATHM1, ATM1, THIOREDOXIN M-TYPE 1, TRX-M1  gene ATHM1  function encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid|GO:0009534|19259774|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast stroma|GO:0009570|19259774|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to oxidative stress|GO:0006979|11169189|IGI  go_process response to cold|GO:0009409|16923014|IEP  go_process positive regulation of catalytic activity|GO:0043085|11169189|IDA  go_function enzyme activator activity|GO:0008047|11169189|IDA  product ATHM1; enzyme activator  note ATHM1; FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, response to cold, positive regulation of catalytic activity; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATHM2; enzyme activator (TAIR:AT4G03520.1); Has 14490 Blast hits to 13443 proteins in 1733 species: Archae - 183; Bacteria - 6149; Metazoa - 2544; Fungi - 764; Plants - 1140; Viruses - 4; Other Eukaryotes - 3706 (source: NCBI BLink).  protein_id AT1G03680.1p  transcript_id AT1G03680.1  protein_id AT1G03680.1p  transcript_id AT1G03680.1  
At1g03687	chr1:000918308	0.0	W/918308-918601,918868-919008,919096-919188,919267-919393,919503-919609,919737-919817,919913-919995,920087-920306	AT1G03687.1 CDS  gene_syn F21B7.29, F21B7_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636); Has 347 Blast hits to 347 proteins in 176 species: Archae - 0; Bacteria - 320; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G03687.1p  transcript_id AT1G03687.1  protein_id AT1G03687.1p  transcript_id AT1G03687.1  
At1g03687	chr1:000918308	0.0	W/918308-918601,918868-919008,919096-919188,919267-919393,919503-919609,919737-919817,919913-919999	AT1G03687.2 CDS  gene_syn F21B7.29, F21B7_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DTW (InterPro:IPR005636); Has 280 Blast hits to 280 proteins in 148 species: Archae - 0; Bacteria - 258; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G03687.2p  transcript_id AT1G03687.2  protein_id AT1G03687.2p  transcript_id AT1G03687.2  
At1g03700	chr1:000921038	0.0	W/921038-921195,921299-921401,921611-921844	AT1G03700.1 CDS  gene_syn F21B7.30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT4G03540.1); Has 260 Blast hits to 260 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03700.1p  transcript_id AT1G03700.1  protein_id AT1G03700.1p  transcript_id AT1G03700.1  
At1g03710	chr1:000923492	0.0	W/923492-923755,923828-923977,924093-924287	AT1G03710.1 CDS  gene_syn F21B7.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 51 Blast hits to 49 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G03710.1p  transcript_id AT1G03710.1  protein_id AT1G03710.1p  transcript_id AT1G03710.1  
At1g03710	chr1:000923492	0.0	W/923492-923755,923828-923977,924093-924287	AT1G03710.2 CDS  gene_syn F21B7.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 51 Blast hits to 49 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G03710.2p  transcript_id AT1G03710.2  protein_id AT1G03710.2p  transcript_id AT1G03710.2  
At1g03720	chr1:000924996	0.0	C/924996-925208,925279-925446,925551-925780,926160-926373	AT1G03720.1 CDS  gene_syn F21B7.32  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  product cathepsin-related  note cathepsin-related; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668); BEST Arabidopsis thaliana protein match is: cathepsin-related (TAIR:AT5G17080.1); Has 1745 Blast hits to 1745 proteins in 329 species: Archae - 2; Bacteria - 34; Metazoa - 852; Fungi - 0; Plants - 371; Viruses - 62; Other Eukaryotes - 424 (source: NCBI BLink).  protein_id AT1G03720.1p  transcript_id AT1G03720.1  protein_id AT1G03720.1p  transcript_id AT1G03720.1  
At1g03730	chr1:000931017	0.0	C/931017-931520	AT1G03730.1 CDS  gene_syn F21B7.33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03600.1); Has 27 Blast hits to 27 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03730.1p  transcript_id AT1G03730.1  protein_id AT1G03730.1p  transcript_id AT1G03730.1  
At1g03740	chr1:000934055	0.0	W/934055-934708,934785-935069,935164-935481,935570-935797,935882-936097,936189-936572,936655-936792	AT1G03740.1 CDS  gene_syn F21B7.34  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G44290.4); Has 90393 Blast hits to 89297 proteins in 3132 species: Archae - 37; Bacteria - 7556; Metazoa - 39924; Fungi - 8378; Plants - 17428; Viruses - 409; Other Eukaryotes - 16661 (source: NCBI BLink).  protein_id AT1G03740.1p  transcript_id AT1G03740.1  protein_id AT1G03740.1p  transcript_id AT1G03740.1  
At1g03740	chr1:000934055	0.0	W/934055-934708,934785-935069,935164-935481,935570-935797,935882-936097,936189-936581	AT1G03740.2 CDS  gene_syn F21B7.34  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G44290.4); Has 90393 Blast hits to 89297 proteins in 3132 species: Archae - 37; Bacteria - 7556; Metazoa - 39924; Fungi - 8378; Plants - 17428; Viruses - 409; Other Eukaryotes - 16661 (source: NCBI BLink).  protein_id AT1G03740.2p  transcript_id AT1G03740.2  protein_id AT1G03740.2p  transcript_id AT1G03740.2  
At1g03743	chr1:000937207	0.0	C/937207-937287	AT1G03743.1 snoRNA  gene_syn 50828.SNORNA00003  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G03743.1  
At1g03746	chr1:000937401	0.0	C/937401-937485	AT1G03746.1 snoRNA  gene_syn 50728.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G03746.1  
At1g03750	chr1:000937920	0.0	W/937920-938309,938424-938530,938634-939800,939876-940002,940092-940367,940453-940678,940773-941068	AT1G03750.1 CDS  gene_syn CHR9, CHROMATIN REMODELING 9, F21M11.34, F21M11_34, SNF2, SUCROSE NON-FERMENTING 2, SWI2, SWITCH 2  gene SWI2  go_component membrane|GO:0016020|17432890|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function helicase activity|GO:0004386||ISS  product SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding  note SWITCH 2 (SWI2); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), SEC-C motif (InterPro:IPR004027), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G19210.1); Has 13589 Blast hits to 9821 proteins in 922 species: Archae - 71; Bacteria - 3060; Metazoa - 3624; Fungi - 2838; Plants - 971; Viruses - 151; Other Eukaryotes - 2874 (source: NCBI BLink).  protein_id AT1G03750.1p  transcript_id AT1G03750.1  protein_id AT1G03750.1p  transcript_id AT1G03750.1  
At1g03760	chr1:000941211	0.0	C/941211-941267,941366-941431,941537-941572,941694-941794,941915-941948,942031-942105,942187-942567,942653-942820,942980-943039,943123-943320	AT1G03760.1 CDS  gene_syn F21M11.33, F21M11_33  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component prefoldin complex|GO:0016272||ISS  go_process protein folding|GO:0006457||ISS  product prefoldin subunit family protein  note prefoldin subunit family protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053); Has 362 Blast hits to 355 proteins in 112 species: Archae - 19; Bacteria - 6; Metazoa - 196; Fungi - 10; Plants - 22; Viruses - 5; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G03760.1p  transcript_id AT1G03760.1  protein_id AT1G03760.1p  transcript_id AT1G03760.1  
At1g03770	chr1:000944772	0.0	W/944772-944982,945117-945168,945472-945530,945780-945861,945952-946072,946169-946210,946309-946812,946894-947001,947123-947293,947399-947431	AT1G03770.1 CDS  gene_syn ARABIDOPSIS THALIANA RING 1B, ATRING1B, F21M11.32, F21M11_32, RING 1B, RING1B  gene RING1B  function Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|19097900|IDA  go_component PRC1 complex|GO:0035102|19097900|IPI  go_process negative regulation of gene expression, epigenetic|GO:0045814|19097900|IGI  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RING1B (RING 1B); protein binding / zinc ion binding  note RING 1B (RING1B); FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: negative regulation of gene expression, epigenetic; LOCATED IN: nucleus, PRC1 complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RING1A (RING 1A); protein binding / zinc ion binding (TAIR:AT5G44280.1); Has 9167 Blast hits to 3918 proteins in 410 species: Archae - 10; Bacteria - 184; Metazoa - 6189; Fungi - 347; Plants - 323; Viruses - 323; Other Eukaryotes - 1791 (source: NCBI BLink).  protein_id AT1G03770.1p  transcript_id AT1G03770.1  protein_id AT1G03770.1p  transcript_id AT1G03770.1  
At1g03780	chr1:000947785	0.0	C/947785-948009,948088-948147,948235-948343,948429-948595,948697-948816,948912-948992,949076-949207,949297-949452,949541-949621,949734-949796,949883-950125,950198-950311,950404-950500,950582-950794,950881-951041,951126-951211,951528-951696	AT1G03780.2 CDS  gene_syn F21M11.31, F21M11_31, TARGETING PROTEIN FOR XKLP2, TPX2  gene TPX2  function Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.  go_component nucleus|GO:0005634|18941054|IDA  go_process spindle assembly|GO:0051225|18941054|IMP  go_function microtubule binding|GO:0008017|18941054|IDA  product targeting protein-related  note TARGETING PROTEIN FOR XKLP2 (TPX2); FUNCTIONS IN: microtubule binding; INVOLVED IN: spindle assembly; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22860.1); Has 1795 Blast hits to 1328 proteins in 174 species: Archae - 5; Bacteria - 77; Metazoa - 847; Fungi - 137; Plants - 212; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).  protein_id AT1G03780.2p  transcript_id AT1G03780.2  protein_id AT1G03780.2p  transcript_id AT1G03780.2  
At1g03780	chr1:000948064	0.0	C/948064-948343,948429-948640,948697-948816,949076-949207,949297-949452,949541-949621,949883-950125,950198-950311,950404-950500,950582-950794,950881-951041,951126-951211,951528-951696	AT1G03780.1 CDS  gene_syn F21M11.31, F21M11_31, TARGETING PROTEIN FOR XKLP2, TPX2  gene TPX2  function Homolog of vertebrate TPX2. Protein has three domains involved in nuclear targeting, one in nuclear export and two in microtubule binding. Involved in mitotic spindle assembly during late prophase and early prometaphase.  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component nucleus|GO:0005634|18941054|IDA  go_process spindle assembly|GO:0051225|18941054|IMP  go_function microtubule binding|GO:0008017|18941054|IDA  product targeting protein-related  note TARGETING PROTEIN FOR XKLP2 (TPX2); FUNCTIONS IN: microtubule binding; INVOLVED IN: spindle assembly; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Targeting for Xklp2 (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22860.1); Has 767 Blast hits to 635 proteins in 103 species: Archae - 2; Bacteria - 27; Metazoa - 428; Fungi - 37; Plants - 70; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).  protein_id AT1G03780.1p  transcript_id AT1G03780.1  protein_id AT1G03780.1p  transcript_id AT1G03780.1  
At1g03790	chr1:000954589	0.0	W/954589-955770	AT1G03790.1 CDS  gene_syn F21M11.30, F21M11_30, SOM, SOMNUS  gene SOM  function Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).  go_component nucleus|GO:0005634|18487351|IDA  go_process negative regulation of seed germination|GO:0010187|18487351|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SOM (SOMNUS); nucleic acid binding / transcription factor  note SOMNUS (SOM); FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: negative regulation of seed germination, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT5G44260.1); Has 3000 Blast hits to 784 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 404; Fungi - 22; Plants - 222; Viruses - 2; Other Eukaryotes - 2350 (source: NCBI BLink).  protein_id AT1G03790.1p  transcript_id AT1G03790.1  protein_id AT1G03790.1p  transcript_id AT1G03790.1  
At1g03800	chr1:000957261	0.0	C/957261-957998	AT1G03800.1 CDS  gene_syn ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ATERF10, ERF DOMAIN PROTEIN 10, ERF10, F21M11.29, F21M11_29  gene ERF10  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-10). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677|11487705|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487705|TAS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription repressor activity|GO:0016564|11487705|TAS  product ERF10 (ERF DOMAIN PROTEIN 10); DNA binding / transcription factor/ transcription repressor  note ERF DOMAIN PROTEIN 10 (ERF10); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF9 (ERF DOMAIN PROTEIN 9); DNA binding / transcription factor/ transcription repressor (TAIR:AT5G44210.1); Has 4036 Blast hits to 3747 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4028; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G03800.1p  transcript_id AT1G03800.1  protein_id AT1G03800.1p  transcript_id AT1G03800.1  
At1g03810	chr1:000958759	0.0	W/958759-959008,959428-959609	AT1G03810.1 CDS  gene_syn F21M11.28, F21M11_28  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT4G28440.1); Has 121 Blast hits to 121 proteins in 28 species: Archae - 12; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G03810.1p  transcript_id AT1G03810.1  protein_id AT1G03810.1p  transcript_id AT1G03810.1  
At1g03820	chr1:000960008	0.0	C/960008-960676	AT1G03820.1 CDS  gene_syn F21M11.27, F21M11_27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1356 Blast hits to 1124 proteins in 87 species: Archae - 0; Bacteria - 21; Metazoa - 28; Fungi - 30; Plants - 81; Viruses - 0; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT1G03820.1p  transcript_id AT1G03820.1  protein_id AT1G03820.1p  transcript_id AT1G03820.1  
At1g03830	chr1:000962128	0.0	C/962128-963321,963469-963546,963639-964191,964295-964380,964504-964626,964739-964873,964952-965041,965124-965309,965453-965506,965599-965736,965996-966157,966446-966622	AT1G03830.1 CDS  gene_syn F21M11.26, F21M11_26  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process immune response|GO:0006955||ISS  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product guanylate-binding family protein  note guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein-like, C-terminal (InterPro:IPR015900), Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: GTP binding / GTPase (TAIR:AT5G46070.1); Has 80855 Blast hits to 44175 proteins in 1894 species: Archae - 979; Bacteria - 10229; Metazoa - 40526; Fungi - 6109; Plants - 3316; Viruses - 380; Other Eukaryotes - 19316 (source: NCBI BLink).  protein_id AT1G03830.1p  transcript_id AT1G03830.1  protein_id AT1G03830.1p  transcript_id AT1G03830.1  
At1g03840	chr1:000967596	0.0	C/967596-968568,969315-969705,969908-970058	AT1G03840.2 CDS  gene_syn F21M11.25, F21M11_25, MGP, Magpie  gene MGP  function MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.  go_component nucleus|GO:0005634|17785527|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|17785527|IPI  go_function zinc ion binding|GO:0008270||ISS  product MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding  note Magpie (MGP); FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: NUC (nutcracker); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G44160.1); Has 42484 Blast hits to 16474 proteins in 313 species: Archae - 0; Bacteria - 0; Metazoa - 40730; Fungi - 160; Plants - 392; Viruses - 4; Other Eukaryotes - 1198 (source: NCBI BLink).  protein_id AT1G03840.2p  transcript_id AT1G03840.2  protein_id AT1G03840.2p  transcript_id AT1G03840.2  
At1g03840	chr1:000967596	0.0	C/967596-968568,969315-969711,969908-970058	AT1G03840.1 CDS  gene_syn F21M11.25, F21M11_25, MGP, Magpie  gene MGP  function MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.  go_component nucleus|GO:0005634|17785527|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|17785527|IPI  go_function zinc ion binding|GO:0008270||ISS  product MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding  note Magpie (MGP); FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: NUC (nutcracker); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G44160.1); Has 42319 Blast hits to 16428 proteins in 301 species: Archae - 0; Bacteria - 0; Metazoa - 40564; Fungi - 162; Plants - 395; Viruses - 4; Other Eukaryotes - 1194 (source: NCBI BLink).  protein_id AT1G03840.1p  transcript_id AT1G03840.1  protein_id AT1G03840.1p  transcript_id AT1G03840.1  
At1g03850	chr1:000976428	0.0	C/976428-976501,977280-977685	AT1G03850.1 CDS  gene_syn F21M11.22, F21M11_22  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: response to cytokinin stimulus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GRX480; electron carrier/ protein disulfide oxidoreductase (TAIR:AT1G28480.1); Has 255 Blast hits to 255 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 5; Plants - 246; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03850.1p  transcript_id AT1G03850.1  protein_id AT1G03850.1p  transcript_id AT1G03850.1  
At1g03850	chr1:000977233	0.0	C/977233-977685	AT1G03850.2 CDS  gene_syn F21M11.22, F21M11_22  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: response to cytokinin stimulus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: GRX480; electron carrier/ protein disulfide oxidoreductase (TAIR:AT1G28480.1); Has 378 Blast hits to 378 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 14; Plants - 331; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G03850.2p  transcript_id AT1G03850.2  protein_id AT1G03850.2p  transcript_id AT1G03850.2  
At1g03860	chr1:000979611	0.0	C/979611-979799,979891-980103,980185-980355,980778-980870	AT1G03860.2 CDS  gene_syn ATPHB2, F21M11.21, F21M11_21, PROHIBITIN 2  gene ATPHB2  function prohibitin 2  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  product ATPHB2 (PROHIBITIN 2)  note PROHIBITIN 2 (ATPHB2); INVOLVED IN: biological_process unknown; LOCATED IN: in 6 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB1 (PROHIBITIN 1) (TAIR:AT4G28510.1); Has 2516 Blast hits to 2515 proteins in 668 species: Archae - 99; Bacteria - 1074; Metazoa - 415; Fungi - 193; Plants - 142; Viruses - 7; Other Eukaryotes - 586 (source: NCBI BLink).  protein_id AT1G03860.2p  transcript_id AT1G03860.2  protein_id AT1G03860.2p  transcript_id AT1G03860.2  
At1g03860	chr1:000979611	0.0	C/979611-979799,979891-980103,980185-980355,980778-980894,980987-981157	AT1G03860.1 CDS  gene_syn ATPHB2, F21M11.21, F21M11_21, PROHIBITIN 2  gene ATPHB2  function prohibitin 2  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  product ATPHB2 (PROHIBITIN 2)  note PROHIBITIN 2 (ATPHB2); INVOLVED IN: biological_process unknown; LOCATED IN: in 7 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB1 (PROHIBITIN 1) (TAIR:AT4G28510.1); Has 2911 Blast hits to 2909 proteins in 772 species: Archae - 127; Bacteria - 1339; Metazoa - 429; Fungi - 193; Plants - 157; Viruses - 14; Other Eukaryotes - 652 (source: NCBI BLink).  protein_id AT1G03860.1p  transcript_id AT1G03860.1  protein_id AT1G03860.1p  transcript_id AT1G03860.1  
At1g03860	chr1:000979611	0.0	C/979611-979799,979891-980103,980185-980355,980778-980894,980987-981157	AT1G03860.3 CDS  gene_syn ATPHB2, F21M11.21, F21M11_21, PROHIBITIN 2  gene ATPHB2  function prohibitin 2  go_component cell wall|GO:0005618|16287169|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrion|GO:0005739|17883375|IDA  go_component plastid|GO:0009536|16618929|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process biological_process|GO:0008150||ND  product ATPHB2 (PROHIBITIN 2)  note PROHIBITIN 2 (ATPHB2); INVOLVED IN: biological_process unknown; LOCATED IN: in 6 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: ATPHB1 (PROHIBITIN 1) (TAIR:AT4G28510.1); Has 2911 Blast hits to 2909 proteins in 772 species: Archae - 127; Bacteria - 1339; Metazoa - 429; Fungi - 193; Plants - 157; Viruses - 14; Other Eukaryotes - 652 (source: NCBI BLink).  protein_id AT1G03860.3p  transcript_id AT1G03860.3  protein_id AT1G03860.3p  transcript_id AT1G03860.3  
At1g03870	chr1:000982625	0.0	C/982625-983368	AT1G03870.1 CDS  gene_syn F21M11.20, F21M11_20, FASCICLIN-LIKE ARABINOOGALACTAN 9, FLA9  gene FLA9  function fasciclin-like arabinogalactan-protein 9 (Fla9)  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|14517339|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9)  note FASCICLIN-LIKE ARABINOOGALACTAN 9 (FLA9); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) (TAIR:AT5G44130.1); Has 676 Blast hits to 664 proteins in 130 species: Archae - 14; Bacteria - 201; Metazoa - 17; Fungi - 4; Plants - 405; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G03870.1p  transcript_id AT1G03870.1  protein_id AT1G03870.1p  transcript_id AT1G03870.1  
At1g03880	chr1:000985786	0.0	W/985786-986068,986279-986541,986854-987282,987524-987916	AT1G03880.1 CDS  gene_syn CRB, CRU2, CRUCIFERIN 2, CRUCIFERIN B, F21M11.19, F21M11_19  gene CRU2  function Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_process seed germination|GO:0009845||TAS  go_function nutrient reservoir activity|GO:0045735||ISS  product CRU2 (CRUCIFERIN 2); nutrient reservoir  note CRUCIFERIN 2 (CRU2); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus, seed germination; LOCATED IN: endomembrane system; EXPRESSED IN: leaf, seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRA1 (CRUCIFERINA); nutrient reservoir (TAIR:AT5G44120.3); Has 688 Blast hits to 653 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 683; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G03880.1p  transcript_id AT1G03880.1  protein_id AT1G03880.1p  transcript_id AT1G03880.1  
At1g03890	chr1:000989250	0.0	W/989250-989550,989653-989918,990049-990459,990531-990908	AT1G03890.1 CDS  gene_syn F21M11.18, F21M11_18  go_component endomembrane system|GO:0012505||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product cupin family protein  note cupin family protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf, seed; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: CRA1 (CRUCIFERINA); nutrient reservoir (TAIR:AT5G44120.3); Has 691 Blast hits to 656 proteins in 126 species: Archae - 0; Bacteria - 61; Metazoa - 2; Fungi - 0; Plants - 627; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G03890.1p  transcript_id AT1G03890.1  protein_id AT1G03890.1p  transcript_id AT1G03890.1  
At1g03900	chr1:000991252	0.0	W/991252-991746,992443-992691,992778-992852	AT1G03900.1 CDS  gene_syn ATNAP4, Arabidopsis thaliana non-intrinsic ABC protein 4, F21M11.36  gene ATNAP4  function member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.  go_component membrane|GO:0016020||IEA  go_process extracellular transport|GO:0006858|11346655|ISS  go_function transporter activity|GO:0005215||ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4); ATPase, coupled to transmembrane movement of substances / transporter  note Arabidopsis thaliana non-intrinsic ABC protein 4 (ATNAP4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: extracellular transport; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58600.1); Has 315 Blast hits to 315 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 35; Plants - 71; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G03900.1p  transcript_id AT1G03900.1  protein_id AT1G03900.1p  transcript_id AT1G03900.1  
At1g03905	chr1:000993478	0.0	W/993478-993631,994046-994206,994354-994405,994496-994632,994828-994914,995313-995594	AT1G03905.1 CDS  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity|GO:0016887||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: POP1; transporter (TAIR:AT5G44110.1); Has 104361 Blast hits to 99730 proteins in 2063 species: Archae - 2221; Bacteria - 80319; Metazoa - 1669; Fungi - 992; Plants - 893; Viruses - 4; Other Eukaryotes - 18263 (source: NCBI BLink).  protein_id AT1G03905.1p  transcript_id AT1G03905.1  protein_id AT1G03905.1p  transcript_id AT1G03905.1  
At1g03910	chr1:000996432	0.0	W/996432-996734,996848-996939,997177-997276,997418-997489,997604-997666,997755-997895,998420-998515,998733-999017,999109-999411,999504-999680,999760-1000026,1000112-1000231	AT1G03910.1 CDS  gene_syn F21M11.16, F21M11_16  product unknown protein  note EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11516 Blast hits to 6722 proteins in 356 species: Archae - 23; Bacteria - 259; Metazoa - 6122; Fungi - 1009; Plants - 493; Viruses - 33; Other Eukaryotes - 3577 (source: NCBI BLink).  protein_id AT1G03910.1p  transcript_id AT1G03910.1  protein_id AT1G03910.1p  transcript_id AT1G03910.1  
At1g03920	chr1:001001473	0.0	W/1001473-1001747,1001809-1002067,1002143-1002384,1002471-1002687,1002783-1002862,1002948-1003032,1003137-1003268,1003389-1003502,1003607-1003654,1003810-1003894,1003971-1004027,1004125-1004240	AT1G03920.1 CDS  gene_syn F21M11.15, F21M11_15  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT2G20470.1); Has 79582 Blast hits to 78618 proteins in 2770 species: Archae - 61; Bacteria - 7465; Metazoa - 33348; Fungi - 7738; Plants - 14842; Viruses - 403; Other Eukaryotes - 15725 (source: NCBI BLink).  protein_id AT1G03920.1p  transcript_id AT1G03920.1  protein_id AT1G03920.1p  transcript_id AT1G03920.1  
At1g03930	chr1:001005439	0.0	W/1005439-1005514,1005612-1005652,1005746-1005815,1005926-1006074,1006176-1006271,1006428-1006498,1006581-1006642,1006734-1006797,1006917-1007001,1007081-1007207,1007290-1007375,1007459-1007525,1007602-1007732,1007828-1008118	AT1G03930.1 CDS  gene_syn ADK1, CASEIN KINASE I-LIKE 9 ALPHA, CASEIN KINASE I-LIKE 9 BETA, CKL9ALPHA, CKL9BETA, DUAL SPECIFICITY KINASE 1, F21M11.14, F21M11_14, dual specificity kinase 1  gene ADK1  function Phosphorylates serine, threonine, and tyrosine  go_component nucleus|GO:0005634|16126836|IDA  go_component cytoplasm|GO:0005737|16126836|IDA  go_process signal transduction|GO:0007165|7527390|TAS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|7527390|IDA  go_function kinase activity|GO:0016301||ISS  product ADK1 (dual specificity kinase 1); kinase/ protein serine/threonine/tyrosine kinase  note dual specificity kinase 1 (ADK1); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ckl7 (Casein Kinase I-like 7); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G44100.1); Has 50185 Blast hits to 43798 proteins in 1410 species: Archae - 11; Bacteria - 5418; Metazoa - 19913; Fungi - 4088; Plants - 6012; Viruses - 381; Other Eukaryotes - 14362 (source: NCBI BLink).  protein_id AT1G03930.1p  transcript_id AT1G03930.1  protein_id AT1G03930.1p  transcript_id AT1G03930.1  
At1g03935	chr1:001008810	0.0	W/1008810-1008896	AT1G03935.1 snoRNA  gene_syn 50728.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G03935.1  
At1g03940	chr1:001009542	0.0	C/1009542-1010951	AT1G03940.1 CDS  gene_syn F21M11.13, F21M11_13  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT1G03495.1); Has 963 Blast hits to 954 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 950; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G03940.1p  transcript_id AT1G03940.1  protein_id AT1G03940.1p  transcript_id AT1G03940.1  
At1g03950	chr1:001011388	0.0	C/1011388-1011433,1011502-1011557,1011654-1011689,1011778-1011858,1011942-1012013,1012165-1012236,1012335-1012439,1012509-1012559,1012646-1012680,1012868-1012912,1013179-1013212	AT1G03950.1 CDS  gene_syn F21M11.12, F21M11_12, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3, VPS2, VPS2.3  gene VPS2.3  go_component ESCRT III complex|GO:0000815|17090720|ISS  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)  note VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3 (VPS2.3); INVOLVED IN: vesicle-mediated transport; LOCATED IN: ESCRT III complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS2.2 (TAIR:AT5G44560.1); Has 1238 Blast hits to 1237 proteins in 168 species: Archae - 0; Bacteria - 6; Metazoa - 605; Fungi - 223; Plants - 241; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G03950.1p  transcript_id AT1G03950.1  protein_id AT1G03950.1p  transcript_id AT1G03950.1  
At1g03960	chr1:001014085	0.0	W/1014085-1014237,1014334-1014543,1014767-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.1 CDS  gene_syn F21M11.11, F21M11_11  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B   regulatory subunit, putative (TAIR:AT5G44090.1); Has 558 Blast hits to 555 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 328; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT1G03960.1p  transcript_id AT1G03960.1  protein_id AT1G03960.1p  transcript_id AT1G03960.1  
At1g03960	chr1:001014824	0.0	W/1014824-1014872,1014951-1015050,1015199-1015304,1015428-1015518,1015684-1015825,1016079-1016226,1016340-1016449,1016795-1016951,1017058-1017183,1017332-1017472	AT1G03960.2 CDS  gene_syn F21M11.11, F21M11_11  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B   regulatory subunit, putative (TAIR:AT5G44090.1); Has 551 Blast hits to 551 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT1G03960.2p  transcript_id AT1G03960.2  protein_id AT1G03960.2p  transcript_id AT1G03960.2  
At1g03970	chr1:001018237	0.0	W/1018237-1019049	AT1G03970.1 CDS  gene_syn F21M11.10, F21M11_10, G-BOX BINDING FACTOR 4, GBF4  gene GBF4  function encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9193069|IDA  go_function DNA binding|GO:0003677|8146148|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function sequence-specific DNA binding|GO:0043565|8146148|IDA  product GBF4; DNA binding / sequence-specific DNA binding / transcription factor  note GBF4; FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT5G44080.1); Has 977 Blast hits to 977 proteins in 101 species: Archae - 0; Bacteria - 2; Metazoa - 338; Fungi - 8; Plants - 587; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G03970.1p  transcript_id AT1G03970.1  protein_id AT1G03970.1p  transcript_id AT1G03970.1  
At1g03980	chr1:001019311	0.0	C/1019311-1019394,1019604-1019779,1019906-1020092,1020187-1020414,1020513-1020564,1020655-1020818,1020982-1021220,1021287-1021443,1021800-1021871	AT1G03980.1 CDS  gene_syn ATPCS2, F21M11.9, F21M11_9, phytochelatin synthase 2  gene ATPCS2  function Encodes a protein with phytochelatin synthase activity which binds Cd2+ and Cd-glutathione complexes with high affinity. The protein has been postulated to be involved in Cd2+ tolerance. AtPCS2 expression appears to be less than that of AtPCS1, explaining the inability of endogenous AtPCS2 to substitute for AtPCS1 in the cad1-3 mutant (AtPCS1 null).  go_component cellular_component|GO:0005575||ND  go_process phytochelatin biosynthetic process|GO:0046938|11684101|IDA  go_process phytochelatin biosynthetic process|GO:0046938||ISS  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756|11684101|IDA  go_function glutathione gamma-glutamylcysteinyltransferase activity|GO:0016756||ISS  product ATPCS2 (phytochelatin synthase 2); glutathione gamma-glutamylcysteinyltransferase  note phytochelatin synthase 2 (ATPCS2); FUNCTIONS IN: glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: phytochelatin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phytochelatin synthase, C-terminal (InterPro:IPR015407), Phytochelatin synthase (InterPro:IPR007719); BEST Arabidopsis thaliana protein match is: CAD1 (CADMIUM SENSITIVE 1); cadmium ion binding / copper ion binding / glutathione gamma-glutamylcysteinyltransferase (TAIR:AT5G44070.1); Has 232 Blast hits to 232 proteins in 107 species: Archae - 0; Bacteria - 105; Metazoa - 28; Fungi - 5; Plants - 76; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G03980.1p  transcript_id AT1G03980.1  protein_id AT1G03980.1p  transcript_id AT1G03980.1  
At1g03982	chr1:001022424	0.0	C/1022424-1022746,1022831-1022912,1023008-1023136	AT1G03982.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6) (TAIR:AT2G20430.1); Has 96 Blast hits to 96 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G03982.1p  transcript_id AT1G03982.1  protein_id AT1G03982.1p  transcript_id AT1G03982.1  
At1g03990	chr1:001024847	0.0	W/1024847-1025095,1025293-1025568,1025865-1027616	AT1G03990.1 CDS  gene_syn F21M11.7, F21M11_7  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product alcohol oxidase-related  note alcohol oxidase-related; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, oxidoreductase activity, FAD binding; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: alcohol oxidase-related (TAIR:AT4G28570.1); Has 2202 Blast hits to 2109 proteins in 514 species: Archae - 16; Bacteria - 1333; Metazoa - 16; Fungi - 113; Plants - 79; Viruses - 0; Other Eukaryotes - 645 (source: NCBI BLink).  protein_id AT1G03990.1p  transcript_id AT1G03990.1  protein_id AT1G03990.1p  transcript_id AT1G03990.1  
At1g04000	chr1:001028415	0.0	C/1028415-1028873	AT1G04000.1 CDS  gene_syn F21M11.6, F21M11_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 36 Blast hits to 36 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04000.1p  transcript_id AT1G04000.1  protein_id AT1G04000.1p  transcript_id AT1G04000.1  
At1g04010	chr1:001031703	0.0	C/1031703-1031784,1031901-1031985,1032059-1032163,1032244-1032412,1032582-1032653,1032808-1032859,1033187-1033281,1033438-1033537,1033876-1034029,1034122-1034338,1034702-1034778,1034886-1035055,1035140-1035284,1035383-1035518,1035886-1036128	AT1G04010.1 CDS  gene_syn F21M11.5, F21M11_5  go_component microsome|GO:0005792|16020547|IDA  go_process lipid metabolic process|GO:0006629||ISS  go_process sterol esterification|GO:0034434|16020547|IDA  go_process sterol esterification|GO:0034434|16020547|IMP  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607|16020547|IDA  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||ISS  go_function phosphatidylethanolamine-sterol O-acyltransferase activity|GO:0080095|16020547|IDA  go_function phosphatidate-sterol O-acyltransferase activity|GO:0080096|16020547|IDA  product phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase  note phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity, phosphatidylethanolamine-sterol O-acyltransferase activity, phosphatidate-sterol O-acyltransferase activity; INVOLVED IN: sterol esterification, lipid metabolic process; LOCATED IN: microsome; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: ATPDAT; phosphatidylcholine-sterol O-acyltransferase (TAIR:AT5G13640.1); Has 448 Blast hits to 445 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 219; Fungi - 76; Plants - 80; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G04010.1p  transcript_id AT1G04010.1  protein_id AT1G04010.1p  transcript_id AT1G04010.1  
At1g04020	chr1:001036610	0.0	W/1036610-1036692,1036797-1036850,1036944-1037014,1037089-1037441,1037531-1037746,1037921-1038175,1038276-1038376,1038519-1038705,1038801-1038898,1038995-1039085,1039224-1039389,1039488-1039606,1039695-1040045	AT1G04020.1 CDS  gene_syn ATBARD1, BARD1, BREAST CANCER ASSOCIATED RING 1, F21M11.4, F21M11_4  gene BARD1  function Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process DNA repair|GO:0006281|16957774|IMP  go_process regulation of meristem organization|GO:0009934|18591352|IMP  go_process leaf development|GO:0048366|18591352|IMP  go_function DNA binding|GO:0003677|18591352|IDA  go_function transcription coactivator activity|GO:0003713||ISS  product BARD1 (BREAST CANCER ASSOCIATED RING 1); DNA binding / transcription coactivator  note BREAST CANCER ASSOCIATED RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: regulation of meristem organization, DNA repair, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: ATBRCA1; ubiquitin-protein ligase (TAIR:AT4G21070.1); Has 4928 Blast hits to 4635 proteins in 247 species: Archae - 0; Bacteria - 10; Metazoa - 3954; Fungi - 264; Plants - 298; Viruses - 11; Other Eukaryotes - 391 (source: NCBI BLink).  protein_id AT1G04020.1p  transcript_id AT1G04020.1  protein_id AT1G04020.1p  transcript_id AT1G04020.1  
At1g04020	chr1:001036610	0.0	W/1036610-1036692,1036797-1036850,1036944-1037018,1037093-1037441,1037531-1037746,1037924-1038175,1038276-1038376,1038519-1038705,1038801-1038898,1038995-1039085,1039224-1039389,1039488-1039606,1039695-1040045	AT1G04020.2 CDS  gene_syn ATBARD1, BARD1, BREAST CANCER ASSOCIATED RING 1, F21M11.4, F21M11_4  gene BARD1  function Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process DNA repair|GO:0006281|16957774|IMP  go_process regulation of meristem organization|GO:0009934|18591352|IMP  go_process leaf development|GO:0048366|18591352|IMP  go_function DNA binding|GO:0003677|18591352|IDA  go_function transcription coactivator activity|GO:0003713||ISS  product BARD1 (BREAST CANCER ASSOCIATED RING 1); DNA binding / transcription coactivator  note BREAST CANCER ASSOCIATED RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: regulation of meristem organization, DNA repair, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: ATBRCA1; ubiquitin-protein ligase (TAIR:AT4G21070.1); Has 5084 Blast hits to 4808 proteins in 251 species: Archae - 0; Bacteria - 39; Metazoa - 4093; Fungi - 261; Plants - 273; Viruses - 11; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT1G04020.2p  transcript_id AT1G04020.2  protein_id AT1G04020.2p  transcript_id AT1G04020.2  
At1g04030	chr1:001040518	0.0	W/1040518-1040553,1040874-1040974,1041049-1042093,1042239-1042313	AT1G04030.1 CDS  gene_syn F21M11.3, F21M11_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1); Has 1619 Blast hits to 1300 proteins in 197 species: Archae - 5; Bacteria - 140; Metazoa - 374; Fungi - 118; Plants - 115; Viruses - 23; Other Eukaryotes - 844 (source: NCBI BLink).  protein_id AT1G04030.1p  transcript_id AT1G04030.1  protein_id AT1G04030.1p  transcript_id AT1G04030.1  
At1g04040	chr1:001042564	0.0	C/1042564-1042741,1042954-1043163,1043392-1043819	AT1G04040.1 CDS  gene_syn F21M11.2, F21M11_2  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function acid phosphatase activity|GO:0003993||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product acid phosphatase class B family protein  note acid phosphatase class B family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: acid phosphatase class B family protein (TAIR:AT5G44020.1); Has 628 Blast hits to 624 proteins in 160 species: Archae - 0; Bacteria - 265; Metazoa - 2; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT1G04040.1p  transcript_id AT1G04040.1  protein_id AT1G04040.1p  transcript_id AT1G04040.1  
At1g04050	chr1:001045967	0.0	C/1045967-1045995,1046099-1046195,1046329-1046379,1046470-1046536,1046624-1046877,1046987-1048005,1048152-1048422,1048499-1048630,1048720-1048758,1048853-1048915,1049014-1049196	AT1G04050.1 CDS  gene_syn ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1, AT1G04060, F21M11.35, F21M11_35, SDG13, SET DOMAIN PROTEIN 13, SUVR1  gene SUVR1  function Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.  go_process chromatin modification|GO:0016568||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  go_component nucleolus|GO:0005730|17020925|IDA  product SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding  note ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1 (SUVR1); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET zinc-binding region (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SUVR2; histone-lysine N-methyltransferase/ zinc ion binding (TAIR:AT5G43990.4); Has 4225 Blast hits to 3835 proteins in 332 species: Archae - 0; Bacteria - 220; Metazoa - 2113; Fungi - 528; Plants - 493; Viruses - 9; Other Eukaryotes - 862 (source: NCBI BLink).  protein_id AT1G04050.1p  transcript_id AT1G04050.1  protein_id AT1G04050.1p  transcript_id AT1G04050.1  
At1g04070	chr1:001050832	0.0	C/1050832-1051116	AT1G04070.1 CDS  gene_syn ATTOM22-I, F20D22.15, TOM22, TOM22-I, TRANSLOCASE OF OUTER MEMBRANE 22-I  gene TOM22-I  function Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.  go_component mitochondrial outer membrane translocase complex|GO:0005742|10889230|ISS  go_process protein targeting to mitochondrion|GO:0006626|10889230|ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|10889230|ISS  product TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I); P-P-bond-hydrolysis-driven protein transmembrane transporter  note TRANSLOCASE OF OUTER MEMBRANE 22-I (TOM22-I); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: mitochondrial outer membrane translocase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import receptor, TOM9-2 subunit, plant (InterPro:IPR017411); BEST Arabidopsis thaliana protein match is: TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT5G43970.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04070.1p  transcript_id AT1G04070.1  protein_id AT1G04070.1p  transcript_id AT1G04070.1  
At1g04080	chr1:001051803	0.0	W/1051803-1052037,1052160-1052269,1052546-1052775,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.1 CDS  gene_syn F20D22.14, PRP39  gene PRP39  go_component intracellular|GO:0005622||IEA  go_function binding|GO:0005488||IEA  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16807317|IMP  product PRP39; binding  note PRP39; FUNCTIONS IN: binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: PRP39-2 (TAIR:AT5G46400.1); Has 3312 Blast hits to 2661 proteins in 380 species: Archae - 0; Bacteria - 496; Metazoa - 1500; Fungi - 623; Plants - 264; Viruses - 71; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G04080.1p  transcript_id AT1G04080.1  protein_id AT1G04080.1p  transcript_id AT1G04080.1  
At1g04080	chr1:001053171	0.0	W/1053171-1053187,1053327-1053494,1053807-1054200,1054663-1054806,1054936-1055088,1055174-1055290,1055478-1055708,1055798-1056103,1056187-1056288,1056434-1056550	AT1G04080.2 CDS  gene_syn F20D22.14, PRP39  gene PRP39  go_component intracellular|GO:0005622||IEA  go_function binding|GO:0005488||IEA  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|16807317|IMP  product PRP39; binding  note PRP39; FUNCTIONS IN: binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), RNA-processing protein, HAT helix (InterPro:IPR003107); BEST Arabidopsis thaliana protein match is: PRP39-2 (TAIR:AT5G46400.1).  protein_id AT1G04080.2p  transcript_id AT1G04080.2  protein_id AT1G04080.2p  transcript_id AT1G04080.2  
At1g04090	chr1:001057225	0.0	W/1057225-1057330,1057635-1059247	AT1G04090.1 CDS  gene_syn F20D22.17, F20D22_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946, plant (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43950.1); Has 205 Blast hits to 195 proteins in 56 species: Archae - 0; Bacteria - 14; Metazoa - 13; Fungi - 66; Plants - 107; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G04090.1p  transcript_id AT1G04090.1  protein_id AT1G04090.1p  transcript_id AT1G04090.1  
At1g04100	chr1:001059809	0.0	W/1059809-1060080,1060324-1060634,1060732-1060864,1060957-1061026	AT1G04100.1 CDS  gene_syn AUXIN-INDUCED PROTEIN 10, F20D22.13, F20D22_13, IAA10, INDOLEACETIC ACID-INDUCED PROTEIN 10  gene IAA10  function Auxin induced gene, IAA10 (IAA10).  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA10; transcription factor  note IAA10; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus, response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor (TAIR:AT4G28640.2); Has 879 Blast hits to 879 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 878; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G04100.1p  transcript_id AT1G04100.1  protein_id AT1G04100.1p  transcript_id AT1G04100.1  
At1g04110	chr1:001061457	0.0	C/1061457-1063784	AT1G04110.1 CDS  gene_syn F20D22.12, F20D22_12, SDD1, STOMATAL DENSITY AND DISTRIBUTION  gene SDD1  function Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases.  go_component external side of plasma membrane|GO:0009897|12119372|IDA  go_process proteolysis|GO:0006508||ISS  go_process stomatal complex morphogenesis|GO:0010103|10809670|IMP  go_process regulation of cell proliferation|GO:0042127|10809670|IMP  go_function serine-type endopeptidase activity|GO:0004252|12119372|ISS  product SDD1 (STOMATAL DENSITY AND DISTRIBUTION); serine-type endopeptidase  note STOMATAL DENSITY AND DISTRIBUTION (SDD1); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: stomatal complex morphogenesis, proteolysis, regulation of cell proliferation; LOCATED IN: external side of plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT2G05920.1); Has 5219 Blast hits to 4504 proteins in 794 species: Archae - 177; Bacteria - 3003; Metazoa - 171; Fungi - 339; Plants - 876; Viruses - 0; Other Eukaryotes - 653 (source: NCBI BLink).  protein_id AT1G04110.1p  transcript_id AT1G04110.1  protein_id AT1G04110.1p  transcript_id AT1G04110.1  
At1g04120	chr1:001064848	0.0	C/1064848-1064960,1065055-1065294,1065380-1065443,1065550-1065855,1065935-1066149,1066231-1066525,1066607-1066771,1066852-1067550,1067763-1067849,1067927-1068247,1068357-1070396	AT1G04120.1 CDS  gene_syn ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5, ATMRP5, MRP5, MULTIDRUG RESISTANCE PROTEIN 5  gene ATMRP5  function member of MRP subfamily  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process response to salt stress|GO:0009651|14684837|IMP  go_process cellular potassium ion homeostasis|GO:0030007|14684837|IMP  go_function sulfonylurea receptor activity|GO:0008281|14684837|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP5; ATPase, coupled to transmembrane movement of substances / sulfonylurea receptor  note ATMRP5; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, sulfonylurea receptor activity; INVOLVED IN: response to salt stress, cellular potassium ion homeostasis; LOCATED IN: vacuolar membrane, plasma membrane, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP3; ATPase, coupled to transmembrane movement of substances / chlorophyll catabolite transporter/ glutathione S-conjugate-exporting ATPase (TAIR:AT3G13080.1); Has 406468 Blast hits to 214472 proteins in 2608 species: Archae - 7504; Bacteria - 289383; Metazoa - 10612; Fungi - 5093; Plants - 3290; Viruses - 21; Other Eukaryotes - 90565 (source: NCBI BLink).  protein_id AT1G04120.1p  transcript_id AT1G04120.1  protein_id AT1G04120.1p  transcript_id AT1G04120.1  
At1g04130	chr1:001073465	0.0	W/1073465-1073569,1073649-1073861,1073940-1074131,1074225-1074425,1074530-1074610,1074898-1075021,1075108-1075200,1075301-1075374	AT1G04130.1 CDS  gene_syn F20D22.10, F20D22_10  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase-related (TAIR:AT1G56440.1); Has 3930 Blast hits to 3426 proteins in 259 species: Archae - 8; Bacteria - 133; Metazoa - 1878; Fungi - 572; Plants - 573; Viruses - 0; Other Eukaryotes - 766 (source: NCBI BLink).  protein_id AT1G04130.1p  transcript_id AT1G04130.1  protein_id AT1G04130.1p  transcript_id AT1G04130.1  
At1g04140	chr1:001075984	0.0	C/1075984-1076010,1076136-1076225,1076311-1076424,1076566-1076679,1076872-1076932,1077036-1077236,1077341-1078353,1078427-1078552,1078682-1078749,1078838-1078946,1079246-1079330,1079410-1079526,1079621-1079779,1080233-1080321	AT1G04140.1 CDS  gene_syn F20D22.9, F20D22_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43930.3); Has 18206 Blast hits to 8655 proteins in 356 species: Archae - 50; Bacteria - 4336; Metazoa - 6723; Fungi - 3683; Plants - 1049; Viruses - 0; Other Eukaryotes - 2365 (source: NCBI BLink).  protein_id AT1G04140.1p  transcript_id AT1G04140.1  protein_id AT1G04140.1p  transcript_id AT1G04140.1  
At1g04140	chr1:001075992	0.0	C/1075992-1076010,1076119-1076225,1076311-1076424,1076566-1076679,1076872-1076932,1077036-1077236,1077341-1078353,1078427-1078552,1078682-1078749,1078838-1078946,1079246-1079330,1079410-1079526,1079621-1079779,1080233-1080321	AT1G04140.2 CDS  gene_syn F20D22.9, F20D22_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43930.3); Has 18156 Blast hits to 8656 proteins in 356 species: Archae - 50; Bacteria - 4318; Metazoa - 6686; Fungi - 3683; Plants - 1054; Viruses - 0; Other Eukaryotes - 2365 (source: NCBI BLink).  protein_id AT1G04140.2p  transcript_id AT1G04140.2  protein_id AT1G04140.2p  transcript_id AT1G04140.2  
At1g04150	chr1:001081208	0.0	C/1081208-1084246	AT1G04150.1 CDS  gene_syn F20D22.8, F20D22_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G12970.1); Has 2701 Blast hits to 2265 proteins in 163 species: Archae - 0; Bacteria - 2; Metazoa - 1863; Fungi - 64; Plants - 546; Viruses - 2; Other Eukaryotes - 224 (source: NCBI BLink).  protein_id AT1G04150.1p  transcript_id AT1G04150.1  protein_id AT1G04150.1p  transcript_id AT1G04150.1  
At1g04160	chr1:001086495	0.0	W/1086495-1086497,1087114-1087242,1087370-1087513,1087657-1087802,1087890-1088049,1088251-1088309,1088411-1088570,1088664-1088813,1088895-1089031,1089121-1089267,1089393-1089494,1089912-1089969,1090061-1090162,1090406-1090443,1090567-1090693,1090815-1090982,1091074-1091205,1091304-1091413,1091502-1091562,1091656-1091833,1091926-1092131,1092302-1092421,1092572-1092670,1092776-1092988,1093109-1093248,1093336-1093450,1093541-1093585,1093692-1093742,1093825-1093995,1094312-1094464,1094551-1094742,1094901-1095029,1095107-1095177,1095347-1095443,1095518-1095574,1095665-1095721,1095804-1095967,1096035-1096146	AT1G04160.1 CDS  gene_syn ARABIDOPSIS THALIANA MYOSIN XI B, ATXIB, F20D22.7, F20D22_7, MYOSIN XI B, MYOSIN XI-8, XI-8, XI-B, XIB  gene XIB  function Encodes a member of the type XI myosin protein family involved in root hair elongation.  go_component myosin complex|GO:0016459||IEA  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_process root hair elongation|GO:0048767|19060218|IGI  go_function motor activity|GO:0003774|11516337|ISS  product XIB (MYOSIN XI B); motor  note MYOSIN XI B (XIB); FUNCTIONS IN: motor activity; INVOLVED IN: root hair elongation, actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: MYA2 (ARABIDOPSIS MYOSIN 2); GTP-dependent protein binding / Rab GTPase binding / motor (TAIR:AT5G43900.1); Has 21601 Blast hits to 14401 proteins in 991 species: Archae - 217; Bacteria - 1240; Metazoa - 13286; Fungi - 1245; Plants - 713; Viruses - 88; Other Eukaryotes - 4812 (source: NCBI BLink).  protein_id AT1G04160.1p  transcript_id AT1G04160.1  protein_id AT1G04160.1p  transcript_id AT1G04160.1  
At1g04170	chr1:001097423	0.0	W/1097423-1097531,1097619-1097680,1097800-1097912,1097999-1098101,1098379-1098606,1098718-1098936,1099037-1099297,1099400-1099702	AT1G04170.1 CDS  gene_syn EIF2 GAMMA, EUKARYOTIC TRANSLATION INITIATION FACTOR 2 GAMMA SUBUNIT, F20D22.6, F20D22_6  gene EIF2 GAMMA  function protein synthesis initiation factor eIF2 gamma  go_function translation initiation factor activity|GO:0003743||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product EIF2 GAMMA; translation factor, nucleic acid binding / translation initiation factor  note EIF2 GAMMA; FUNCTIONS IN: translation factor activity, nucleic acid binding, translation initiation factor activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative (TAIR:AT4G18330.2); Has 20108 Blast hits to 20075 proteins in 4607 species: Archae - 440; Bacteria - 10098; Metazoa - 3659; Fungi - 379; Plants - 626; Viruses - 0; Other Eukaryotes - 4906 (source: NCBI BLink).  protein_id AT1G04170.1p  transcript_id AT1G04170.1  protein_id AT1G04170.1p  transcript_id AT1G04170.1  
At1g04171	chr1:001100444	0.0	C/1100444-1100608	AT1G04171.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G04171.1p  transcript_id AT1G04171.1  protein_id AT1G04171.1p  transcript_id AT1G04171.1  
At1g04180	chr1:001104623	0.0	W/1104623-1105288,1105389-1105988	AT1G04180.1 CDS  gene_syn F20D22.5, F20D22_5  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: YUCCA5; monooxygenase (TAIR:AT5G43890.1); Has 7796 Blast hits to 7785 proteins in 1030 species: Archae - 8; Bacteria - 3977; Metazoa - 680; Fungi - 943; Plants - 361; Viruses - 0; Other Eukaryotes - 1827 (source: NCBI BLink).  protein_id AT1G04180.1p  transcript_id AT1G04180.1  protein_id AT1G04180.1p  transcript_id AT1G04180.1  
At1g04190	chr1:001106617	0.0	C/1106617-1106692,1106857-1106990,1107070-1107189,1107268-1107447,1107556-1107729,1107820-1107870,1107985-1108078,1108400-1108557	AT1G04190.1 CDS  gene_syn F20D22.4, F20D22_4  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 15524 Blast hits to 9686 proteins in 698 species: Archae - 779; Bacteria - 4552; Metazoa - 3572; Fungi - 847; Plants - 951; Viruses - 0; Other Eukaryotes - 4823 (source: NCBI BLink).  protein_id AT1G04190.1p  transcript_id AT1G04190.1  protein_id AT1G04190.1p  transcript_id AT1G04190.1  
At1g04200	chr1:001109676	0.0	W/1109676-1109865,1109984-1110223,1110300-1110363,1110457-1110586,1110678-1110819,1110983-1111228,1111305-1111392,1111523-1111625,1111791-1111919,1112001-1112114,1112291-1112409,1112500-1112590,1112689-1112781,1112861-1112950,1113072-1113191,1113301-1113392,1113507-1113564,1113786-1113875	AT1G04200.1 CDS  gene_syn F20D22.3, F20D22_3  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 296 Blast hits to 293 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 238; Fungi - 12; Plants - 16; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G04200.1p  transcript_id AT1G04200.1  protein_id AT1G04200.1p  transcript_id AT1G04200.1  
At1g04210	chr1:001114696	0.0	W/1114696-1115192,1115557-1115821,1115938-1116100,1116226-1116961,1117053-1117482,1117575-1117756,1117989-1118145,1118223-1118447,1118531-1118881,1118968-1119069,1119153-1119383	AT1G04210.1 CDS  gene_syn F20D22.2, F20D22_2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MEKK1 (MAP KINASE KINASE KINASE 1); DNA binding / MAP kinase kinase kinase/ kinase/ kinase binding / protein binding (TAIR:AT4G08500.1); Has 93749 Blast hits to 76874 proteins in 1795 species: Archae - 79; Bacteria - 8196; Metazoa - 43368; Fungi - 6667; Plants - 20883; Viruses - 341; Other Eukaryotes - 14215 (source: NCBI BLink).  protein_id AT1G04210.1p  transcript_id AT1G04210.1  protein_id AT1G04210.1p  transcript_id AT1G04210.1  
At1g04220	chr1:001119853	0.0	C/1119853-1120671,1121716-1122483	AT1G04220.1 CDS  gene_syn 3-KETOACYL-COA SYNTHASE 2, F20D22.1, F20D22_1, KCS2  gene KCS2  function Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020||IEA  go_process response to osmotic stress|GO:0006970|18786002|IEP  go_process response to wounding|GO:0009611|18786002|IEP  go_process suberin biosynthetic process|GO:0010345|18786002|IMP  go_function fatty acid elongase activity|GO:0009922|15277688|IDA  product KCS2 (3-KETOACYL-COA SYNTHASE 2); fatty acid elongase  note 3-KETOACYL-COA SYNTHASE 2 (KCS2); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: response to wounding, response to osmotic stress, suberin biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS20 (3-KETOACYL-COA SYNTHASE 20); fatty acid elongase (TAIR:AT5G43760.1); Has 3471 Blast hits to 3463 proteins in 932 species: Archae - 0; Bacteria - 1380; Metazoa - 0; Fungi - 4; Plants - 1937; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT1G04220.1p  transcript_id AT1G04220.1  protein_id AT1G04220.1p  transcript_id AT1G04220.1  
At1g04230	chr1:001125576	0.0	W/1125576-1125728,1125995-1126124,1126233-1126363,1126535-1126673,1126848-1126962,1127193-1127256,1127434-1127673,1127823-1127828	AT1G04230.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G43720.1); Has 1140 Blast hits to 725 proteins in 146 species: Archae - 0; Bacteria - 18; Metazoa - 635; Fungi - 256; Plants - 52; Viruses - 5; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT1G04230.1p  transcript_id AT1G04230.1  protein_id AT1G04230.1p  transcript_id AT1G04230.1  
At1g04240	chr1:001128564	0.0	C/1128564-1128639,1128744-1129052,1129135-1129319	AT1G04240.1 CDS  gene_syn F19P19.32, F19P19_32, IAA3, INDOLE-3-ACETIC ACID 3, SHORT HYPOCOTYL 2, SHY2  gene SHY2  function SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|11884676|IMP  go_process response to brassinosteroid stimulus|GO:0009741|16367964|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product SHY2 (SHORT HYPOCOTYL 2); transcription factor  note SHORT HYPOCOTYL 2 (SHY2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor (TAIR:AT5G43700.1); Has 1102 Blast hits to 1101 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1101; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G04240.1p  transcript_id AT1G04240.1  protein_id AT1G04240.1p  transcript_id AT1G04240.1  
At1g04250	chr1:001136382	0.0	W/1136382-1136620,1136934-1137145,1137460-1137598,1137740-1137801,1138303-1138340	AT1G04250.1 CDS  gene_syn AUXIN RESISTANT 3, AXR3, F19P19.31, F19P19_31, IAA17, INDOLE ACETIC ACID 17  gene AXR3  function Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.  go_component proteasome complex|GO:0000502|15994909|IDA  go_component nucleus|GO:0005634|15994909|IDA  go_component signalosome|GO:0008180|15994909|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|15994909|IDA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to auxin stimulus|GO:0009733|17919906|IEP  go_process response to auxin stimulus|GO:0009733|9478901|IMP  go_process auxin mediated signaling pathway|GO:0009734|11283339|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||NAS  product AXR3 (AUXIN RESISTANT 3); transcription factor  note AUXIN RESISTANT 3 (AXR3); FUNCTIONS IN: transcription factor activity; INVOLVED IN: auxin mediated signaling pathway, response to auxin stimulus; LOCATED IN: proteasome complex, signalosome, SCF ubiquitin ligase complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14); protein binding / transcription factor/ transcription repressor (TAIR:AT4G14550.1); Has 1100 Blast hits to 1100 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1099; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G04250.1p  transcript_id AT1G04250.1  protein_id AT1G04250.1p  transcript_id AT1G04250.1  
At1g04260	chr1:001140749	0.0	C/1140749-1141297	AT1G04260.1 CDS  gene_syn CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7, F19P19.30, F19P19_30, MPI7, MPIP7, PRA1.D, PRENYLATED RAB ACCEPTOR 1.D  gene MPI7  function Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors.  go_component cytoplasm|GO:0005737|11725951|IDA  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_process spread of virus within host|GO:0046739|11725951|TAS  go_function protein binding|GO:0005515|11725951|IPI  product MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7); protein binding  note CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7 (MPI7); FUNCTIONS IN: protein binding; INVOLVED IN: vesicle-mediated transport, spread of virus within host; LOCATED IN: endoplasmic reticulum, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1.E (PRENYLATED RAB ACCEPTOR 1.E) (TAIR:AT1G08770.1); Has 409 Blast hits to 409 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 52; Plants - 217; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G04260.1p  transcript_id AT1G04260.1  protein_id AT1G04260.1p  transcript_id AT1G04260.1  
At1g04270	chr1:001141852	0.0	C/1141852-1142100,1142576-1142633,1142721-1142869,1142958-1142960	AT1G04270.1 CDS  gene_syn CYTOSOLIC RIBOSOMAL PROTEIN S15, F19P19.29, F19P19_29, RIBOSOMAL PROTEIN S15, RPS15  gene RPS15  function Encodes cytosolic ribosomal protein S15.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome  note CYTOSOLIC RIBOSOMAL PROTEIN S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15 (RPS15D) (TAIR:AT5G09510.1); Has 5180 Blast hits to 5180 proteins in 1501 species: Archae - 179; Bacteria - 2245; Metazoa - 207; Fungi - 151; Plants - 555; Viruses - 0; Other Eukaryotes - 1843 (source: NCBI BLink).  protein_id AT1G04270.1p  transcript_id AT1G04270.1  protein_id AT1G04270.1p  transcript_id AT1G04270.1  
At1g04270	chr1:001141852	0.0	C/1141852-1142100,1142579-1142633,1142721-1142869,1142958-1142960	AT1G04270.2 CDS  gene_syn CYTOSOLIC RIBOSOMAL PROTEIN S15, F19P19.29, F19P19_29, RIBOSOMAL PROTEIN S15, RPS15  gene RPS15  function Encodes cytosolic ribosomal protein S15.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome  note CYTOSOLIC RIBOSOMAL PROTEIN S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15 (RPS15D) (TAIR:AT5G09510.1); Has 5435 Blast hits to 5435 proteins in 1600 species: Archae - 179; Bacteria - 2449; Metazoa - 207; Fungi - 153; Plants - 562; Viruses - 0; Other Eukaryotes - 1885 (source: NCBI BLink).  protein_id AT1G04270.2p  transcript_id AT1G04270.2  protein_id AT1G04270.2p  transcript_id AT1G04270.2  
At1g04280	chr1:001143643	0.0	C/1143643-1143888,1143980-1144124,1144234-1144556,1144655-1144784,1144876-1145094,1145295-1145359,1145497-1145720,1146141-1146374,1146523-1146541	AT1G04280.1 CDS  gene_syn F19P19.28, F19P19_28  go_component membrane|GO:0016020|17432890|IDA  product unknown protein  note unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06750.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G04280.1p  transcript_id AT1G04280.1  protein_id AT1G04280.1p  transcript_id AT1G04280.1  
At1g04290	chr1:001147721	0.0	C/1147721-1147864,1147948-1148091,1148173-1148352	AT1G04290.1 CDS  gene_syn F19P19.27, F19P19_27  go_component peroxisome|GO:0005777|17951448|IDA  go_process biological_process|GO:0008150||ND  go_function acyl-CoA thioesterase activity|GO:0016291||ISS  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product thioesterase family protein  note thioesterase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: thioesterase family protein (TAIR:AT2G29590.1); Has 654 Blast hits to 653 proteins in 190 species: Archae - 15; Bacteria - 172; Metazoa - 161; Fungi - 107; Plants - 138; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G04290.1p  transcript_id AT1G04290.1  protein_id AT1G04290.1p  transcript_id AT1G04290.1  
At1g04295	chr1:001147781	0.0	W/1147781-1148435	AT1G04295.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G04290  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G04295.1  
At1g04300	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1152947,1153036-1153124,1153234-1153345,1153718-1153895	AT1G04300.1 CDS  gene_syn F19P19.26, F19P19_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15585 Blast hits to 9972 proteins in 679 species: Archae - 16; Bacteria - 1260; Metazoa - 5683; Fungi - 2012; Plants - 671; Viruses - 109; Other Eukaryotes - 5834 (source: NCBI BLink).  protein_id AT1G04300.1p  transcript_id AT1G04300.1  protein_id AT1G04300.1p  transcript_id AT1G04300.1  
At1g04300	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1152971,1153036-1153124,1153234-1153345,1153718-1153895	AT1G04300.3 CDS  gene_syn F19P19.26, F19P19_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15485 Blast hits to 9800 proteins in 673 species: Archae - 16; Bacteria - 1225; Metazoa - 5601; Fungi - 1994; Plants - 616; Viruses - 101; Other Eukaryotes - 5932 (source: NCBI BLink).  protein_id AT1G04300.3p  transcript_id AT1G04300.3  protein_id AT1G04300.3p  transcript_id AT1G04300.3  
At1g04300	chr1:001148818	0.0	C/1148818-1149996,1150118-1150319,1150392-1150882,1150968-1151118,1151212-1151324,1151503-1151851,1152317-1152475,1152677-1152809,1152879-1153095	AT1G04300.2 CDS  gene_syn F19P19.26, F19P19_26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15192 Blast hits to 9607 proteins in 677 species: Archae - 16; Bacteria - 1260; Metazoa - 5600; Fungi - 1932; Plants - 456; Viruses - 109; Other Eukaryotes - 5819 (source: NCBI BLink).  protein_id AT1G04300.2p  transcript_id AT1G04300.2  protein_id AT1G04300.2p  transcript_id AT1G04300.2  
At1g04310	chr1:001155116	0.0	C/1155116-1155277,1155350-1157125	AT1G04310.1 CDS  gene_syn ERS2, ERS2 PROTEIN, ETHYLENE RESPONSE SENSOR 2, F19P19.25, F19P19_25  gene ERS2  function encodes an ethylene receptor related to bacterial two-component histidine kinases.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process negative regulation of ethylene mediated signaling pathway|GO:0010105|7569898|TAS  go_function protein histidine kinase activity|GO:0004673||ISS  go_function glycogen synthase kinase 3 activity|GO:0004696|15703053|TAS  go_function receptor activity|GO:0004872|7569898|TAS  go_function ethylene binding|GO:0051740|15703053|IDA  product ERS2 (ETHYLENE RESPONSE SENSOR 2); ethylene binding / glycogen synthase kinase 3/ protein histidine kinase/ receptor  note ETHYLENE RESPONSE SENSOR 2 (ERS2); FUNCTIONS IN: ethylene binding, receptor activity, protein histidine kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: negative regulation of ethylene mediated signaling pathway; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: ETR2 (ethylene response 2); ethylene binding / glycogen synthase kinase 3/ protein histidine kinase/ receptor (TAIR:AT3G23150.1); Has 6424 Blast hits to 6310 proteins in 841 species: Archae - 27; Bacteria - 5090; Metazoa - 0; Fungi - 250; Plants - 704; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).  protein_id AT1G04310.1p  transcript_id AT1G04310.1  protein_id AT1G04310.1p  transcript_id AT1G04310.1  
At1g04320	chr1:001159023	0.0	W/1159023-1159093	AT1G04320.1 tRNA  gene_syn 51096.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G04320.1  
At1g04330	chr1:001161584	0.0	C/1161584-1161886	AT1G04330.1 CDS  gene_syn F19P19.24, F19P19_24  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 63 Blast hits to 63 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04330.1p  transcript_id AT1G04330.1  protein_id AT1G04330.1p  transcript_id AT1G04330.1  
At1g04340	chr1:001163345	0.0	C/1163345-1163452,1163606-1163704,1163791-1163880,1163972-1164086,1164670-1164737	AT1G04340.1 CDS  gene_syn F19P19.23, F19P19_23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product lesion inducing protein-related  note lesion inducing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: lesion inducing protein-related (TAIR:AT5G43460.1); Has 99 Blast hits to 99 proteins in 21 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G04340.1p  transcript_id AT1G04340.1  protein_id AT1G04340.1p  transcript_id AT1G04340.1  
At1g04350	chr1:001165296	0.0	W/1165296-1165801,1165873-1166194,1166284-1166538	AT1G04350.1 CDS  gene_syn F19P19.22, F19P19_22  function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT5G59540.1); Has 5572 Blast hits to 5558 proteins in 676 species: Archae - 0; Bacteria - 688; Metazoa - 121; Fungi - 531; Plants - 3056; Viruses - 0; Other Eukaryotes - 1176 (source: NCBI BLink).  protein_id AT1G04350.1p  transcript_id AT1G04350.1  protein_id AT1G04350.1p  transcript_id AT1G04350.1  
At1g04360	chr1:001167507	0.0	C/1167507-1168652	AT1G04360.1 CDS  gene_syn F19P19.21, F19P19_21  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G43420.1); Has 6245 Blast hits to 6224 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 1993; Fungi - 432; Plants - 2648; Viruses - 79; Other Eukaryotes - 1093 (source: NCBI BLink).  protein_id AT1G04360.1p  transcript_id AT1G04360.1  protein_id AT1G04360.1p  transcript_id AT1G04360.1  
At1g04370	chr1:001175177	0.0	W/1175177-1175578	AT1G04370.1 CDS  gene_syn ATERF14, Ethylene-responsive element binding factor 14, F19P19.19, F19P19_19  gene ATERF14  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ATERF14 (Ethylene-responsive element binding factor 14); DNA binding / transcription factor  note Ethylene-responsive element binding factor 14 (ATERF14); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive factor, putative (TAIR:AT5G43410.1); Has 3937 Blast hits to 3712 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3927; Viruses - 2; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G04370.1p  transcript_id AT1G04370.1  protein_id AT1G04370.1p  transcript_id AT1G04370.1  
At1g04380	chr1:001177142	0.0	C/1177142-1177393,1177526-1177847,1177921-1178384	AT1G04380.1 CDS  gene_syn F19P19.18, F19P19_18  function encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G04350.1); Has 5591 Blast hits to 5571 proteins in 683 species: Archae - 0; Bacteria - 708; Metazoa - 124; Fungi - 500; Plants - 3059; Viruses - 0; Other Eukaryotes - 1200 (source: NCBI BLink).  protein_id AT1G04380.1p  transcript_id AT1G04380.1  protein_id AT1G04380.1p  transcript_id AT1G04380.1  
At1g04390	chr1:001179678	0.0	C/1179678-1180110,1180479-1180631,1180717-1181481,1181669-1181769,1182081-1182323,1182454-1182587,1182691-1183198,1183302-1183428,1183530-1183615	AT1G04390.1 CDS  gene_syn F19P19.16, F19P19_16  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); Has 127 Blast hits to 118 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04390.1p  transcript_id AT1G04390.1  protein_id AT1G04390.1p  transcript_id AT1G04390.1  
At1g04400	chr1:001185719	0.0	C/1185719-1186306,1186452-1187164,1187260-1187484,1187589-1187901	AT1G04400.1 CDS  gene_syn AT-PHH1, CRY2, CRYPTOCHROME 2, CRYPTOCHROME 2 APOPROTEIN, F19P19.14, F19P19_14, FHA, PHH1  gene CRY2  function Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2 s physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a closed conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an open conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.  go_component vacuole|GO:0005773|15539469|IDA  go_component nucleus|GO:0005634|10476076|IDA  go_process chromatin remodeling|GO:0006338|17470059|IMP  go_process response to water deprivation|GO:0009414|16093319|IGI  go_process response to blue light|GO:0009637|9565033|IMP  go_process phototropism|GO:0009638|9565033|IGI  go_process regulation of flower development|GO:0009909|17259260|IDA  go_process positive regulation of flower development|GO:0009911|17259260|IMP  go_process regulation of meristem growth|GO:0010075|18424613|IGI  go_process stomatal movement|GO:0010118|16093319|IGI  go_process circadian regulation of calcium ion oscillation|GO:0010617|17982000|IMP  go_function blue light photoreceptor activity|GO:0009882|11493548|ISS  go_function protein homodimerization activity|GO:0042803|15805487|IPI  product CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization  note CRYPTOCHROME 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase (TAIR:AT4G08920.1); Has 8475 Blast hits to 8465 proteins in 901 species: Archae - 55; Bacteria - 1877; Metazoa - 346; Fungi - 99; Plants - 568; Viruses - 2; Other Eukaryotes - 5528 (source: NCBI BLink).  protein_id AT1G04400.1p  transcript_id AT1G04400.1  protein_id AT1G04400.1p  transcript_id AT1G04400.1  
At1g04400	chr1:001185719	0.0	C/1185719-1186306,1186452-1187164,1187260-1187484,1187589-1187901	AT1G04400.2 CDS  gene_syn AT-PHH1, CRY2, CRYPTOCHROME 2, CRYPTOCHROME 2 APOPROTEIN, F19P19.14, F19P19_14, FHA, PHH1  gene CRY2  function Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2 s physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a closed conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an open conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.  go_component vacuole|GO:0005773|15539469|IDA  go_component nucleus|GO:0005634|10476076|IDA  go_process chromatin remodeling|GO:0006338|17470059|IMP  go_process response to water deprivation|GO:0009414|16093319|IGI  go_process response to blue light|GO:0009637|9565033|IMP  go_process phototropism|GO:0009638|9565033|IGI  go_process regulation of flower development|GO:0009909|17259260|IDA  go_process positive regulation of flower development|GO:0009911|17259260|IMP  go_process regulation of meristem growth|GO:0010075|18424613|IGI  go_process stomatal movement|GO:0010118|16093319|IGI  go_process circadian regulation of calcium ion oscillation|GO:0010617|17982000|IMP  go_function blue light photoreceptor activity|GO:0009882|11493548|ISS  go_function protein homodimerization activity|GO:0042803|15805487|IPI  product CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein homodimerization  note CRYPTOCHROME 2 (CRY2); FUNCTIONS IN: protein homodimerization activity, blue light photoreceptor activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/ protein homodimerization/ protein kinase (TAIR:AT4G08920.1); Has 8475 Blast hits to 8465 proteins in 901 species: Archae - 55; Bacteria - 1877; Metazoa - 346; Fungi - 99; Plants - 568; Viruses - 2; Other Eukaryotes - 5528 (source: NCBI BLink).  protein_id AT1G04400.2p  transcript_id AT1G04400.2  protein_id AT1G04400.2p  transcript_id AT1G04400.2  
At1g04410	chr1:001189418	0.0	C/1189418-1189512,1189601-1189712,1189805-1189940,1190030-1190307,1190465-1190640,1190747-1190905,1191225-1191267	AT1G04410.1 CDS  gene_syn F19P19.13, F19P19_13  go_component nucleus|GO:0005634|14617066|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function malate dehydrogenase activity|GO:0016615||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function L-malate dehydrogenase activity|GO:0030060||IEA  go_function malate dehydrogenase activity|GO:0016615||ISS  product malate dehydrogenase, cytosolic, putative  note malate dehydrogenase, cytosolic, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase (InterPro:IPR001236), Malate dehydrogenase, NAD or NADP (InterPro:IPR010945), NAD(P)-binding (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase, cytosolic, putative (TAIR:AT5G43330.1); Has 7871 Blast hits to 7869 proteins in 1725 species: Archae - 115; Bacteria - 3866; Metazoa - 1047; Fungi - 188; Plants - 460; Viruses - 0; Other Eukaryotes - 2195 (source: NCBI BLink).  protein_id AT1G04410.1p  transcript_id AT1G04410.1  protein_id AT1G04410.1p  transcript_id AT1G04410.1  
At1g04420	chr1:001191634	0.0	W/1191634-1191858,1191939-1192034,1192214-1192297,1192413-1192573,1192718-1192835,1192925-1193060,1193143-1193321,1193460-1193699	AT1G04420.1 CDS  gene_syn F19P19.12, F19P19_12  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: KAB1 (POTASSIUM CHANNEL BETA SUBUNIT); oxidoreductase/ potassium channel (TAIR:AT1G04690.1); Has 17372 Blast hits to 17351 proteins in 1400 species: Archae - 300; Bacteria - 9458; Metazoa - 1333; Fungi - 1228; Plants - 519; Viruses - 0; Other Eukaryotes - 4534 (source: NCBI BLink).  protein_id AT1G04420.1p  transcript_id AT1G04420.1  protein_id AT1G04420.1p  transcript_id AT1G04420.1  
At1g04425	chr1:001194187	0.0	W/1194187-1196889	AT1G04425.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G04425.1  
At1g04430	chr1:001198860	0.0	W/1198860-1199114,1199197-1199361,1199459-1199641,1199710-1200304,1200424-1200536,1200643-1200863,1200962-1201301	AT1G04430.1 CDS  gene_syn F19P19.11, F19P19_11  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT4G14360.2); Has 569 Blast hits to 556 proteins in 52 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 484; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G04430.1p  transcript_id AT1G04430.1  protein_id AT1G04430.1p  transcript_id AT1G04430.1  
At1g04430	chr1:001198860	0.0	W/1198860-1199114,1199197-1199361,1199459-1199641,1199710-1200304,1200424-1200536,1200643-1200863,1200962-1201301	AT1G04430.2 CDS  gene_syn F19P19.11, F19P19_11  go_component plasma membrane|GO:0005886|17151019|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT4G14360.2); Has 569 Blast hits to 556 proteins in 52 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 484; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G04430.2p  transcript_id AT1G04430.2  protein_id AT1G04430.2p  transcript_id AT1G04430.2  
At1g04440	chr1:001202815	0.0	W/1202815-1202890,1202976-1203016,1203104-1203173,1203272-1203420,1203495-1203590,1203698-1203768,1203844-1203905,1204044-1204107,1204182-1204266,1204393-1204519,1204619-1204704,1204795-1204858,1205115-1205251,1205386-1205664	AT1G04440.1 CDS  gene_syn CASEIN KINASE LIKE 13, CKL13, F19P19.10, F19P19_10  gene CKL13  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product CKL13 (CASEIN KINASE LIKE 13); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CASEIN KINASE LIKE 13 (CKL13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ckl8 (Casein Kinase I-like 8); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G43320.1); Has 39741 Blast hits to 38140 proteins in 1287 species: Archae - 11; Bacteria - 4854; Metazoa - 16565; Fungi - 3697; Plants - 4898; Viruses - 286; Other Eukaryotes - 9430 (source: NCBI BLink).  protein_id AT1G04440.1p  transcript_id AT1G04440.1  protein_id AT1G04440.1p  transcript_id AT1G04440.1  
At1g04445	chr1:001207344	0.0	W/1207344-1207862	AT1G04445.1 CDS  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04445.1p  transcript_id AT1G04445.1  protein_id AT1G04445.1p  transcript_id AT1G04445.1  
At1g04450	chr1:001209006	0.0	W/1209006-1209060,1209159-1209259,1209347-1209853	AT1G04450.1 CDS  gene_syn F19P19.8, F19P19_8, RIC3, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 3  gene RIC3  function Encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. The protein most similar to RIC1 (family subgroup III). Gene is expressed predominantly in inflorescence and flower tissue. Interacts with ROP1 to modulate calcium ion influxes required to generate tip-focused calcium gradients.It  go_component cytoplasm|GO:0005737|11752391|IDA  go_component cytoplasm|GO:0005737|15824136|IDA  go_process elevation of cytosolic calcium ion concentration|GO:0007204|15824136|IMP  go_process pollen tube growth|GO:0009860|11752391|IMP  go_process regulation of exocytosis|GO:0017157|18591430|IDA  go_process regulation of actin filament depolymerization|GO:0030834|15824136|IMP  go_process regulation of calcium-mediated signaling|GO:0050848|15824136|IMP  go_process positive regulation of calcium-mediated signaling|GO:0050850|15824136|IMP  go_process establishment of vesicle localization|GO:0051650|18591430|IDA  go_function protein binding|GO:0005515|15824136|IPI  product RIC3 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 3); protein binding  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 3 (RIC3); FUNCTIONS IN: protein binding; INVOLVED IN: in 7 processes; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1); protein binding (TAIR:AT2G33460.1); Has 106 Blast hits to 106 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04450.1p  transcript_id AT1G04450.1  protein_id AT1G04450.1p  transcript_id AT1G04450.1  
At1g04457	chr1:001210319	0.0	C/1210319-1210549	AT1G04457.1 pseudogenic_transcript  pseudo  function Pseudogene of AT2G33450; 50S ribosomal protein L28, chloroplast (CL28)  
At1g04470	chr1:001211177	0.0	C/1211177-1212144,1212222-1212408,1212486-1213158,1213230-1213897,1213980-1214591	AT1G04470.1 CDS  gene_syn F19P19.7, F19P19_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33420.1); Has 116 Blast hits to 109 proteins in 23 species: Archae - 0; Bacteria - 1; Metazoa - 4; Fungi - 4; Plants - 95; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G04470.1p  transcript_id AT1G04470.1  protein_id AT1G04470.1p  transcript_id AT1G04470.1  
At1g04480	chr1:001216110	0.0	W/1216110-1216122,1216244-1216528,1217133-1217257	AT1G04480.1 CDS  gene_syn F19P19.5, F19P19_5  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L23 (RPL23A)  note 60S ribosomal protein L23 (RPL23A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218); BEST Arabidopsis thaliana protein match is: emb2171 (embryo defective 2171); structural constituent of ribosome (TAIR:AT3G04400.1); Has 6297 Blast hits to 6297 proteins in 1833 species: Archae - 236; Bacteria - 2977; Metazoa - 280; Fungi - 176; Plants - 586; Viruses - 0; Other Eukaryotes - 2042 (source: NCBI BLink).  protein_id AT1G04480.1p  transcript_id AT1G04480.1  protein_id AT1G04480.1p  transcript_id AT1G04480.1  
At1g04490	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.1 CDS  gene_syn F19P19.4, F19P19_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33360.2); Has 63 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04490.1p  transcript_id AT1G04490.1  protein_id AT1G04490.1p  transcript_id AT1G04490.1  
At1g04490	chr1:001218020	0.0	C/1218020-1218181,1218282-1219325	AT1G04490.2 CDS  gene_syn F19P19.4, F19P19_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33360.2); Has 63 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04490.2p  transcript_id AT1G04490.2  protein_id AT1G04490.2p  transcript_id AT1G04490.2  
At1g04500	chr1:001221757	0.0	C/1221757-1221864,1221956-1222081,1222174-1222365,1222489-1223181,1224194-1224235	AT1G04500.1 CDS  gene_syn F19P19.3, F19P19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product zinc finger CONSTANS-related  note zinc finger CONSTANS-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33350.2); Has 1014 Blast hits to 1014 proteins in 72 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 2; Plants - 902; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT1G04500.1p  transcript_id AT1G04500.1  protein_id AT1G04500.1p  transcript_id AT1G04500.1  
At1g04501	chr1:001224552	0.0	W/1224552-1224680	AT1G04501.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G04501.1p  transcript_id AT1G04501.1  protein_id AT1G04501.1p  transcript_id AT1G04501.1  
At1g04510	chr1:001226749	0.0	W/1226749-1226761,1226852-1226937,1227087-1227158,1227247-1227309,1227580-1227666,1227816-1227957,1228046-1228167,1228331-1228447,1228706-1228801,1228897-1228956,1229054-1229128,1229233-1229337,1229504-1229623,1229717-1229794,1229893-1229977,1230065-1230116,1230303-1230373,1230465-1230592	AT1G04510.1 CDS  gene_syn F19P19.2, F19P19_2  go_component nucleolus|GO:0005730|15496452|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: response to cadmium ion; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), U box (InterPro:IPR003613), WD40 repeat, region (InterPro:IPR017986), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Pre-mRNA-splicing factor 19 (InterPro:IPR013915); BEST Arabidopsis thaliana protein match is: nucleotide binding / ubiquitin-protein ligase (TAIR:AT2G33340.2); Has 39753 Blast hits to 19409 proteins in 575 species: Archae - 62; Bacteria - 5219; Metazoa - 17707; Fungi - 7589; Plants - 3300; Viruses - 0; Other Eukaryotes - 5876 (source: NCBI BLink).  protein_id AT1G04510.1p  transcript_id AT1G04510.1  protein_id AT1G04510.1p  transcript_id AT1G04510.1  
At1g04510	chr1:001226749	0.0	W/1226749-1226761,1226852-1226937,1227087-1227158,1227247-1227309,1227580-1227666,1227816-1227957,1228046-1228167,1228331-1228447,1228706-1228801,1228897-1228956,1229054-1229128,1229233-1229337,1229504-1229623,1229717-1229794,1229893-1229977,1230065-1230116,1230303-1230379,1230471-1230592	AT1G04510.2 CDS  gene_syn F19P19.2, F19P19_2  go_component nucleolus|GO:0005730|15496452|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: response to cadmium ion; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), WD40 repeat (InterPro:IPR001680), Pre-mRNA-splicing factor 19 (InterPro:IPR013915), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: nucleotide binding / ubiquitin-protein ligase (TAIR:AT2G33340.2); Has 39665 Blast hits to 19422 proteins in 576 species: Archae - 58; Bacteria - 5242; Metazoa - 17676; Fungi - 7593; Plants - 3277; Viruses - 0; Other Eukaryotes - 5819 (source: NCBI BLink).  protein_id AT1G04510.2p  transcript_id AT1G04510.2  protein_id AT1G04510.2p  transcript_id AT1G04510.2  
At1g04520	chr1:001231852	0.0	W/1231852-1232272,1232605-1232991,1233493-1233600,1233780-1233787	AT1G04520.1 CDS  gene_syn F19P19.1, F19P19_1, PDLP2, PLASMODESMATA-LOCATED PROTEIN 2  gene PDLP2  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component plasmodesma|GO:0009506|18215111|IDA  go_process plasmodesmata-mediated intercellular transport|GO:0010497|18215111|IGI  go_function molecular_function|GO:0003674||ND  product PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2)  note PLASMODESMATA-LOCATED PROTEIN 2 (PDLP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, plasmodesmata-mediated intercellular transport; LOCATED IN: plasmodesma; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: PDLP3 (PLASMODESMATA-LOCATED PROTEIN 3) (TAIR:AT2G33330.1); Has 635 Blast hits to 597 proteins in 41 species: Archae - 0; Bacteria - 31; Metazoa - 5; Fungi - 14; Plants - 583; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04520.1p  transcript_id AT1G04520.1  protein_id AT1G04520.1p  transcript_id AT1G04520.1  
At1g04530	chr1:001234456	0.0	C/1234456-1234504,1234604-1234758,1234994-1235108,1235185-1235357,1235455-1235895	AT1G04530.1 CDS  gene_syn T1G11.22, T1G11_22  go_function binding|GO:0005488||IEA  product binding  note binding; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G17940.1); Has 445 Blast hits to 236 proteins in 47 species: Archae - 10; Bacteria - 76; Metazoa - 30; Fungi - 6; Plants - 278; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G04530.1p  transcript_id AT1G04530.1  protein_id AT1G04530.1p  transcript_id AT1G04530.1  
At1g04540	chr1:001237256	0.0	W/1237256-1239061	AT1G04540.1 CDS  gene_syn T1G11.21, T1G11_21  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  product C2 domain-containing protein  note C2 domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT2G33320.1); Has 359 Blast hits to 288 proteins in 52 species: Archae - 0; Bacteria - 12; Metazoa - 84; Fungi - 28; Plants - 186; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G04540.1p  transcript_id AT1G04540.1  protein_id AT1G04540.1p  transcript_id AT1G04540.1  
At1g04550	chr1:001240582	0.0	W/1240582-1240784,1241057-1241343,1241425-1241542,1241616-1241677,1241761-1241810	AT1G04550.2 CDS  gene_syn AUXIN-INDUCED PROTEIN 12, BDL, BODENLOS, IAA12, T1G11.20, T1G11_20  gene IAA12  function IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|10068632|IGI  go_process embryonic pattern specification|GO:0009880|10068632|IMP  go_process xylem and phloem pattern formation|GO:0010051|18258861|IMP  go_process root development|GO:0048364|18258861|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription repressor activity|GO:0016564|18258861|IDA  product IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor  note AUXIN-INDUCED PROTEIN 12 (IAA12); FUNCTIONS IN: transcription repressor activity, transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, embryonic pattern specification, root development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA13; transcription factor (TAIR:AT2G33310.3); Has 1212 Blast hits to 1212 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1211; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G04550.2p  transcript_id AT1G04550.2  protein_id AT1G04550.2p  transcript_id AT1G04550.2  
At1g04550	chr1:001240582	0.0	W/1240582-1240784,1241057-1241375	AT1G04550.1 CDS  gene_syn AUXIN-INDUCED PROTEIN 12, BDL, BODENLOS, IAA12, T1G11.20, T1G11_20  gene IAA12  function IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|10068632|IGI  go_process embryonic pattern specification|GO:0009880|10068632|IMP  go_process xylem and phloem pattern formation|GO:0010051|18258861|IMP  go_process root development|GO:0048364|18258861|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription repressor activity|GO:0016564|18258861|IDA  product IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor  note AUXIN-INDUCED PROTEIN 12 (IAA12); FUNCTIONS IN: transcription repressor activity, transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, embryonic pattern specification, root development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA13; transcription factor (TAIR:AT2G33310.3); Has 648 Blast hits to 648 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 648; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04550.1p  transcript_id AT1G04550.1  protein_id AT1G04550.1p  transcript_id AT1G04550.1  
At1g04555	chr1:001242743	0.0	W/1242743-1242896,1243442-1243512,1243608-1243743,1243852-1243949	AT1G04555.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33380.1); Has 49 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04555.1p  transcript_id AT1G04555.1  protein_id AT1G04555.1p  transcript_id AT1G04555.1  
At1g04560	chr1:001245070	0.0	W/1245070-1245199,1245292-1245469,1245636-1245888	AT1G04560.1 CDS  gene_syn T1G11.19, T1G11_19  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AWPM-19-like membrane family protein  note AWPM-19-like membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like membrane family protein (TAIR:AT1G29520.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04560.1p  transcript_id AT1G04560.1  protein_id AT1G04560.1p  transcript_id AT1G04560.1  
At1g04570	chr1:001246859	0.0	C/1246859-1248003,1248117-1248600	AT1G04570.1 CDS  gene_syn T1G11.18, T1G11_18  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product integral membrane transporter family protein  note integral membrane transporter family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Biopterin transport-related protein BT1 (InterPro:IPR004324), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: integral membrane transporter family protein (TAIR:AT2G33280.1); Has 457 Blast hits to 455 proteins in 149 species: Archae - 6; Bacteria - 186; Metazoa - 0; Fungi - 8; Plants - 126; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT1G04570.1p  transcript_id AT1G04570.1  protein_id AT1G04570.1p  transcript_id AT1G04570.1  
At1g04580	chr1:001252212	0.0	C/1252212-1252441,1252542-1252731,1252827-1252925,1253012-1253107,1253182-1254147,1254220-1254438,1254541-1254750,1254866-1255125,1255277-1256884,1257375-1257510	AT1G04580.1 CDS  gene_syn AAO4, ALDEHYDE OXIDASE 2, ALDEHYDE OXIDASE 4, ARABIDOPSIS ALDEHYDE OXIDASE 4, ATAO-4, ATAO2, T1G11.17, T1G11_17  gene AAO4  function Encodes aldehyde oxidase AAO4 preferentially expressed in developing seeds.  go_component cytosol|GO:0005829|19297586|TAS  go_process abscisic acid biosynthetic process|GO:0009688|10972874|TAS  go_process glucosinolate metabolic process|GO:0019760|19297586|IMP  go_function aldehyde oxidase activity|GO:0004031||ISS  go_function aryl-aldehyde oxidase activity|GO:0018488|19297586|IDA  product AAO4 (ARABIDOPSIS ALDEHYDE OXIDASE 4); aldehyde oxidase/ aryl-aldehyde oxidase  note ARABIDOPSIS ALDEHYDE OXIDASE 4 (AAO4); FUNCTIONS IN: aryl-aldehyde oxidase activity, aldehyde oxidase activity; INVOLVED IN: glucosinolate metabolic process, abscisic acid biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Oxidoreductase, molybdopterin binding (InterPro:IPR000572), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: AAO3 (Abscisic ALDEHYDE OXIDASE 3); abscisic aldehyde oxidase/ aldehyde oxidase/ indole-3-acetaldehyde oxidase (TAIR:AT2G27150.2); Has 13018 Blast hits to 12615 proteins in 775 species: Archae - 155; Bacteria - 6276; Metazoa - 958; Fungi - 76; Plants - 145; Viruses - 0; Other Eukaryotes - 5408 (source: NCBI BLink).  protein_id AT1G04580.1p  transcript_id AT1G04580.1  protein_id AT1G04580.1p  transcript_id AT1G04580.1  
At1g04590	chr1:001258760	0.0	C/1258760-1258899,1259027-1259219,1259358-1259570,1259728-1259871,1260012-1260125,1260525-1260626,1260746-1260806,1260942-1260978,1261270-1261411	AT1G04590.1 CDS  gene_syn T1G11.16, T1G11_16  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: emb1417 (embryo defective 1417) (TAIR:AT4G21190.1); Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04590.1p  transcript_id AT1G04590.1  protein_id AT1G04590.1p  transcript_id AT1G04590.1  
At1g04590	chr1:001258760	0.0	C/1258760-1258899,1259027-1259228,1259358-1259570,1259728-1259871,1260012-1260125,1260525-1260626,1260746-1260806,1260942-1260978,1261270-1261411	AT1G04590.2 CDS  gene_syn T1G11.16, T1G11_16  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G18975.3); Has 54 Blast hits to 54 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04590.2p  transcript_id AT1G04590.2  protein_id AT1G04590.2p  transcript_id AT1G04590.2  
At1g04600	chr1:001262123	0.0	W/1262123-1262125,1262556-1262681,1262897-1263040,1263175-1263320,1263412-1263568,1263681-1263739,1263833-1263992,1264094-1264243,1264310-1264446,1264533-1264679,1264760-1264861,1265159-1265216,1265291-1265392,1265492-1265529,1265614-1265740,1265823-1265993,1266077-1266208,1266314-1266423,1266552-1266612,1266815-1266992,1267076-1267281,1267395-1267514,1267771-1267869,1267996-1268283,1268406-1268558,1268673-1268822,1268940-1269104,1269192-1269331,1269452-1269566,1269645-1269665,1269771-1269848,1269937-1270107,1270272-1270424,1270572-1270748,1270841-1271131,1271199-1271269,1271367-1271466,1271543-1271599,1271678-1271734,1271941-1272021,1272101-1272177,1272262-1272376	AT1G04600.1 CDS  gene_syn ATXIA, MYOSIN XI A, T1G11.15, T1G11_15, XIA  gene XIA  function member of Myosin-like proteins  go_component myosin complex|GO:0016459||IEA  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product XIA (MYOSIN XI A); motor/ protein binding  note MYOSIN XI A (XIA); FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Prefoldin (InterPro:IPR009053), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XID; motor/ protein binding (TAIR:AT2G33240.1); Has 110296 Blast hits to 60794 proteins in 2188 species: Archae - 1424; Bacteria - 13624; Metazoa - 50724; Fungi - 8270; Plants - 3596; Viruses - 668; Other Eukaryotes - 31990 (source: NCBI BLink).  protein_id AT1G04600.1p  transcript_id AT1G04600.1  protein_id AT1G04600.1p  transcript_id AT1G04600.1  
At1g04610	chr1:001279524	0.0	W/1279524-1280237,1280400-1280771,1281104-1281331	AT1G04610.1 CDS  gene_syn T1G11.14, T1G11_14  go_function oxidoreductase activity|GO:0016491||IEA  go_process auxin biosynthetic process|GO:0009851|11209081|IMP  product flavin-containing monooxygenase / FMO (YUCCA3)  note flavin-containing monooxygenase / FMO (YUCCA3); FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase, putative / FMO, putative (TAIR:AT2G33230.1); Has 6536 Blast hits to 6525 proteins in 719 species: Archae - 16; Bacteria - 2791; Metazoa - 669; Fungi - 952; Plants - 366; Viruses - 0; Other Eukaryotes - 1742 (source: NCBI BLink).  protein_id AT1G04610.1p  transcript_id AT1G04610.1  protein_id AT1G04610.1p  transcript_id AT1G04610.1  
At1g04620	chr1:001282869	0.0	C/1282869-1282959,1283068-1283162,1283258-1283322,1283483-1283540,1283639-1283708,1283794-1283873,1283969-1283996,1284101-1284162,1284243-1284278,1284356-1284453,1284628-1284690,1284790-1284841,1284926-1285004,1285139-1285180,1285285-1285369,1285516-1285627,1285719-1285803,1285896-1286001,1286411-1286492	AT1G04620.1 CDS  gene_syn T1G11.13, T1G11_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function coenzyme F420 hydrogenase activity|GO:0050454||ISS  product coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family  note coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family; FUNCTIONS IN: coenzyme F420 hydrogenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal (InterPro:IPR007525), Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal (InterPro:IPR007516); Has 371 Blast hits to 370 proteins in 121 species: Archae - 138; Bacteria - 142; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G04620.1p  transcript_id AT1G04620.1  protein_id AT1G04620.1p  transcript_id AT1G04620.1  
At1g04625	chr1:001287831	0.0	C/1287831-1287920,1288232-1288788,1289694-1289820	AT1G04625.1 CDS  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G46460.1).  protein_id AT1G04625.1p  transcript_id AT1G04625.1  protein_id AT1G04625.1p  transcript_id AT1G04625.1  
At1g04630	chr1:001289921	0.0	C/1289921-1290065,1290152-1290223,1290772-1290986	AT1G04630.1 CDS  gene_syn MEE4, T1G11.12, T1G11_12, maternal effect embryo arrest 4  gene MEE4  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product MEE4 (maternal effect embryo arrest 4)  note maternal effect embryo arrest 4 (MEE4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; CONTAINS InterPro DOMAIN/s: GRIM-19 (InterPro:IPR009346); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33220.1); Has 226 Blast hits to 226 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 53; Plants - 38; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G04630.1p  transcript_id AT1G04630.1  protein_id AT1G04630.1p  transcript_id AT1G04630.1  
At1g04635	chr1:001291350	0.0	W/1291350-1291805	AT1G04635.1 CDS  gene_syn EMB1687, EMBRYO DEFECTIVE 1687  gene EMB1687  go_component vacuole|GO:0005773|15539469|IDA  go_function ribonuclease activity|GO:0004540||IEA  go_process tRNA processing|GO:0008033||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ribonuclease P activity|GO:0004526||ISS  product EMB1687 (EMBRYO DEFECTIVE 1687); ribonuclease P/ ribonuclease  note EMBRYO DEFECTIVE 1687 (EMB1687); FUNCTIONS IN: ribonuclease activity, ribonuclease P activity; INVOLVED IN: embryonic development ending in seed dormancy, tRNA processing; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Ribonuclease P-related (InterPro:IPR002759); Has 168 Blast hits to 168 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 60; Plants - 26; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G04635.1p  transcript_id AT1G04635.1  protein_id AT1G04635.1p  transcript_id AT1G04635.1  
At1g04640	chr1:001292541	0.0	W/1292541-1293248	AT1G04640.1 CDS  gene_syn LIP2, LIPOYLTRANSFERASE 2  gene LIP2  function Lipoyltransferase, located in mitochondria but not found in chloroplasts  go_component mitochondrion|GO:0005739|11427685|IDA  go_process lipoic acid metabolic process|GO:0000273|11427685|IGI  go_function lipoyltransferase activity|GO:0017118|11427685|IGI  product LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase  note LIPOYLTRANSFERASE 2 (LIP2); FUNCTIONS IN: lipoyltransferase activity; INVOLVED IN: lipoic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoate-protein ligase B (InterPro:IPR000544), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: lipoyltransferase (LIP2p) (TAIR:AT4G31050.1); Has 4283 Blast hits to 4280 proteins in 1035 species: Archae - 13; Bacteria - 1910; Metazoa - 81; Fungi - 87; Plants - 50; Viruses - 0; Other Eukaryotes - 2142 (source: NCBI BLink).  protein_id AT1G04640.1p  transcript_id AT1G04640.1  protein_id AT1G04640.1p  transcript_id AT1G04640.1  
At1g04640	chr1:001292541	0.0	W/1292541-1293248	AT1G04640.2 CDS  gene_syn LIP2, LIPOYLTRANSFERASE 2  gene LIP2  function Lipoyltransferase, located in mitochondria but not found in chloroplasts  go_component mitochondrion|GO:0005739|11427685|IDA  go_process lipoic acid metabolic process|GO:0000273|11427685|IGI  go_function lipoyltransferase activity|GO:0017118|11427685|IGI  product LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase  note LIPOYLTRANSFERASE 2 (LIP2); FUNCTIONS IN: lipoyltransferase activity; INVOLVED IN: lipoic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoate-protein ligase B (InterPro:IPR000544), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: lipoyltransferase (LIP2p) (TAIR:AT4G31050.1); Has 4283 Blast hits to 4280 proteins in 1035 species: Archae - 13; Bacteria - 1910; Metazoa - 81; Fungi - 87; Plants - 50; Viruses - 0; Other Eukaryotes - 2142 (source: NCBI BLink).  protein_id AT1G04640.2p  transcript_id AT1G04640.2  protein_id AT1G04640.2p  transcript_id AT1G04640.2  
At1g04645	chr1:001293853	0.0	C/1293853-1294239	AT1G04645.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G16970.1); Has 100 Blast hits to 97 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04645.1p  transcript_id AT1G04645.1  protein_id AT1G04645.1p  transcript_id AT1G04645.1  
At1g04650	chr1:001294893	0.0	C/1294893-1295775,1295941-1297535,1297706-1297855,1297945-1298034,1298122-1298256,1298471-1298563,1298856-1298903	AT1G04650.1 CDS  gene_syn T1G11.9, T1G11_9  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 27 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G04650.1p  transcript_id AT1G04650.1  protein_id AT1G04650.1p  transcript_id AT1G04650.1  
At1g04660	chr1:001300668	0.0	C/1300668-1301306	AT1G04660.1 CDS  gene_syn T1G11.8, T1G11_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 107826 Blast hits to 25432 proteins in 1348 species: Archae - 224; Bacteria - 31451; Metazoa - 40710; Fungi - 6263; Plants - 8990; Viruses - 1254; Other Eukaryotes - 18934 (source: NCBI BLink).  protein_id AT1G04660.1p  transcript_id AT1G04660.1  protein_id AT1G04660.1p  transcript_id AT1G04660.1  
At1g04670	chr1:001301985	0.0	W/1301985-1302089,1302161-1302286,1302383-1302532	AT1G04670.1 CDS  gene_syn T1G11.23, T1G11_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 15 Blast hits to 15 proteins in 7 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04670.1p  transcript_id AT1G04670.1  protein_id AT1G04670.1p  transcript_id AT1G04670.1  
At1g04680	chr1:001304052	0.0	C/1304052-1304279,1304373-1304511,1304621-1304724,1304823-1305465,1306792-1306872,1307680-1307780	AT1G04680.1 CDS  gene_syn T1G11.7, T1G11_7  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT4G13710.1); Has 926 Blast hits to 921 proteins in 162 species: Archae - 0; Bacteria - 377; Metazoa - 0; Fungi - 139; Plants - 402; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G04680.1p  transcript_id AT1G04680.1  protein_id AT1G04680.1p  transcript_id AT1G04680.1  
At1g04684	chr1:001310430	0.0	C/1310430-1310579	AT1G04684.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G04684.1p  transcript_id AT1G04684.1  protein_id AT1G04684.1p  transcript_id AT1G04684.1  
At1g04690	chr1:001313662	0.0	W/1313662-1314029,1314464-1314659,1314780-1314923,1315041-1315205,1315307-1315420	AT1G04690.1 CDS  gene_syn K+ CHANNEL BETA SUBUNIT PROTEIN, KAB1, KV-BETA1, POTASSIUM CHANNEL BETA SUBUNIT, POTASSIUM CHANNEL BETA SUBUNIT HOMOLOG, T1G11.6, T1G11_6  gene KAB1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process potassium ion transport|GO:0006813||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium channel activity|GO:0005267||ISS  product KAB1 (POTASSIUM CHANNEL BETA SUBUNIT); oxidoreductase/ potassium channel  note POTASSIUM CHANNEL BETA SUBUNIT (KAB1); FUNCTIONS IN: oxidoreductase activity, potassium channel activity; INVOLVED IN: oxidation reduction, potassium ion transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Potassium channel, voltage-dependent, beta subunit, KCNAB-related (InterPro:IPR005399); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT1G60690.1); Has 17446 Blast hits to 17422 proteins in 1383 species: Archae - 314; Bacteria - 9995; Metazoa - 800; Fungi - 1248; Plants - 507; Viruses - 0; Other Eukaryotes - 4582 (source: NCBI BLink).  protein_id AT1G04690.1p  transcript_id AT1G04690.1  protein_id AT1G04690.1p  transcript_id AT1G04690.1  
At1g04700	chr1:001316919	0.0	W/1316919-1318787,1318867-1319187,1319285-1319524,1319605-1319768,1319852-1319999,1320088-1320210,1320286-1320373,1320478-1320653	AT1G04700.1 CDS  gene_syn T1G11.5, T1G11_5  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT3G24715.1); Has 85559 Blast hits to 84432 proteins in 3568 species: Archae - 48; Bacteria - 6917; Metazoa - 39046; Fungi - 6565; Plants - 18076; Viruses - 417; Other Eukaryotes - 14490 (source: NCBI BLink).  protein_id AT1G04700.1p  transcript_id AT1G04700.1  protein_id AT1G04700.1p  transcript_id AT1G04700.1  
At1g04710	chr1:001321941	0.0	W/1321941-1322018,1322257-1322321,1322407-1322491,1322573-1322699,1322788-1322886,1322967-1323034,1323132-1323239,1323323-1323400,1323506-1323638,1323732-1323828,1323905-1324028,1324134-1324242,1324308-1324391,1324480-1324556	AT1G04710.1 CDS  gene_syn 3-KETO-ACYL-COA THIOLASE 1, KAT1, PEROXISOMAL 3-KETOACYL-COA THIOLASE 4, PKT4, T1G11.4, T1G11_4  gene PKT4  function EC2.3.1.16 thiolase.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_process metabolic process|GO:0008152||IEA  go_process fatty acid oxidation|GO:0019395||IEA  go_process catechol catabolic process, ortho-cleavage|GO:0019615||IEA  go_process protocatechuate catabolic process, ortho-cleavage|GO:0019618||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acetyl-CoA C-acyltransferase activity|GO:0003988||ISS  product PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4); acetyl-CoA C-acyltransferase/ catalytic  note PEROXISOMAL 3-KETOACYL-COA THIOLASE 4 (PKT4); FUNCTIONS IN: catalytic activity, acetyl-CoA C-acyltransferase activity; INVOLVED IN: catechol catabolic process, ortho-cleavage, protocatechuate catabolic process, ortho-cleavage, metabolic process, fatty acid oxidation; LOCATED IN: peroxisome, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase-like (InterPro:IPR016039), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3); acetyl-CoA C-acyltransferase (TAIR:AT2G33150.1); Has 15493 Blast hits to 15479 proteins in 1310 species: Archae - 231; Bacteria - 7938; Metazoa - 831; Fungi - 423; Plants - 174; Viruses - 0; Other Eukaryotes - 5896 (source: NCBI BLink).  protein_id AT1G04710.1p  transcript_id AT1G04710.1  protein_id AT1G04710.1p  transcript_id AT1G04710.1  
At1g04720	chr1:001324923	0.0	W/1324923-1324960	AT1G04720.1 tRNA  gene_syn 50893.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT1G04720.1  
At1g04730	chr1:001325385	0.0	C/1325385-1325438,1325590-1325689,1325855-1326144,1326194-1326253,1326340-1326531,1326637-1326815,1327044-1327122,1327225-1327306,1327394-1327491,1327572-1327640,1327837-1327904,1328034-1328128,1328457-1328501,1328722-1328882,1329148-1329213,1329319-1329420,1329559-1329645,1329764-1330036,1330147-1330346,1330474-1330631,1330680-1331086	AT1G04730.1 CDS  gene_syn T1G11.3, T1G11_3  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATPase activity|GO:0016887||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding (TAIR:AT5G22010.1); Has 2914 Blast hits to 2907 proteins in 426 species: Archae - 268; Bacteria - 302; Metazoa - 605; Fungi - 480; Plants - 212; Viruses - 18; Other Eukaryotes - 1029 (source: NCBI BLink).  protein_id AT1G04730.1p  transcript_id AT1G04730.1  protein_id AT1G04730.1p  transcript_id AT1G04730.1  
At1g04750	chr1:001331857	0.0	C/1331857-1332000,1332137-1332199,1332389-1332509,1332589-1332730,1333237-1333426	AT1G04750.1 CDS  gene_syn AT VAMP7B, ATVAMP721, VAMP721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 721, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B  gene VAMP721  function vesicle-associated membrane protein 7B (At VAMP7B) mRNA,  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endosome|GO:0005768|15876431|TAS  go_component plasma membrane|GO:0005886|15876431|TAS  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)  note VESICLE-ASSOCIATED MEMBRANE PROTEIN 721 (VAMP721); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) (TAIR:AT2G33120.1); Has 1809 Blast hits to 1809 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 842; Fungi - 296; Plants - 364; Viruses - 0; Other Eukaryotes - 307 (source: NCBI BLink).  protein_id AT1G04750.1p  transcript_id AT1G04750.1  protein_id AT1G04750.1p  transcript_id AT1G04750.1  
At1g04750	chr1:001331857	0.0	C/1331857-1332000,1332137-1332199,1332389-1332509,1332589-1332730,1333351-1333426	AT1G04750.2 CDS  gene_syn AT VAMP7B, ATVAMP721, VAMP721, VAMP7B, VESICLE-ASSOCIATED MEMBRANE PROTEIN 721, VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B  gene VAMP721  function vesicle-associated membrane protein 7B (At VAMP7B) mRNA,  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endosome|GO:0005768|15876431|TAS  go_component plasma membrane|GO:0005886|15876431|TAS  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)  note VESICLE-ASSOCIATED MEMBRANE PROTEIN 721 (VAMP721); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) (TAIR:AT2G33120.1); Has 1657 Blast hits to 1657 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 806; Fungi - 266; Plants - 312; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).  protein_id AT1G04750.2p  transcript_id AT1G04750.2  protein_id AT1G04750.2p  transcript_id AT1G04750.2  
At1g04760	chr1:001334760	0.0	W/1334760-1334949,1335332-1335473,1335563-1335683,1335768-1335830,1335924-1336070	AT1G04760.1 CDS  gene_syn ATVAMP726, F13M7.25, F13M7_25, VAMP726, VESICLE-ASSOCIATED MEMBRANE PROTEIN 726  gene ATVAMP726  function member of Synaptobrevin -like protein family  go_component chloroplast|GO:0009507|15028209|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endosome|GO:0005768|15876431|TAS  go_component plasma membrane|GO:0005886|15876431|TAS  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product ATVAMP726  note ATVAMP726; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: ATVAMP725 (TAIR:AT2G32670.1); Has 1806 Blast hits to 1806 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 830; Fungi - 294; Plants - 363; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G04760.1p  transcript_id AT1G04760.1  protein_id AT1G04760.1p  transcript_id AT1G04760.1  
At1g04770	chr1:001336564	0.0	C/1336564-1336986,1337087-1337242,1337344-1337556,1337648-1337767	AT1G04770.1 CDS  gene_syn F13M7.24, F13M7_24  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product male sterility MS5 family protein  note male sterility MS5 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1); binding (TAIR:AT5G48850.1); Has 145 Blast hits to 145 proteins in 21 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G04770.1p  transcript_id AT1G04770.1  protein_id AT1G04770.1p  transcript_id AT1G04770.1  
At1g04778	chr1:001339947	0.0	W/1339947-1340117	AT1G04778.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G04778.1p  transcript_id AT1G04778.1  protein_id AT1G04778.1p  transcript_id AT1G04778.1  
At1g04780	chr1:001340891	0.0	C/1340891-1341259,1341340-1342965	AT1G04780.1 CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G24210.1); Has 832 Blast hits to 578 proteins in 80 species: Archae - 0; Bacteria - 8; Metazoa - 576; Fungi - 12; Plants - 146; Viruses - 2; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT1G04780.1p  transcript_id AT1G04780.1  protein_id AT1G04780.1p  transcript_id AT1G04780.1  
At1g04790	chr1:001345469	0.0	W/1345469-1346241,1346359-1346839,1346942-1347040,1347238-1347438,1347527-1347615,1347705-1347804,1347899-1347997,1348081-1348143	AT1G04790.1 CDS  gene_syn F13M7.22, F13M7_22  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT3G55530.1); Has 6374 Blast hits to 6356 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 2257; Fungi - 483; Plants - 2544; Viruses - 68; Other Eukaryotes - 1022 (source: NCBI BLink).  protein_id AT1G04790.1p  transcript_id AT1G04790.1  protein_id AT1G04790.1p  transcript_id AT1G04790.1  
At1g04800	chr1:001348635	0.0	C/1348635-1349237	AT1G04800.1 CDS  gene_syn F13M7.21, F13M7_21  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 100341 Blast hits to 23884 proteins in 1440 species: Archae - 160; Bacteria - 31051; Metazoa - 31586; Fungi - 6910; Plants - 10047; Viruses - 1434; Other Eukaryotes - 19153 (source: NCBI BLink).  protein_id AT1G04800.1p  transcript_id AT1G04800.1  protein_id AT1G04800.1p  transcript_id AT1G04800.1  
At1g04810	chr1:001350304	0.0	W/1350304-1350449,1350833-1350902,1351107-1351212,1351526-1351634,1351713-1351881,1352071-1352531,1352638-1352773,1352876-1353124,1353224-1353444,1353541-1353799,1353921-1354153,1354240-1354738,1354914-1355261	AT1G04810.1 CDS  gene_syn F13M7.20, F13M7_20  go_component plasma membrane|GO:0005886|17317660|IDA  go_function binding|GO:0005488||IEA  go_function enzyme regulator activity|GO:0030234||IEA  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540|9741626|TAS  go_component proteasome regulatory particle, base subcomplex|GO:0008540||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|11742986|TAS  product 26S proteasome regulatory subunit, putative  note 26S proteasome regulatory subunit, putative; FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015), Armadillo-type fold (InterPro:IPR016024), 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit (InterPro:IPR016642); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (TAIR:AT2G32730.1); Has 813 Blast hits to 749 proteins in 190 species: Archae - 12; Bacteria - 25; Metazoa - 307; Fungi - 211; Plants - 86; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT1G04810.1p  transcript_id AT1G04810.1  protein_id AT1G04810.1p  transcript_id AT1G04810.1  
At1g04820	chr1:001356421	0.0	C/1356421-1357074,1357158-1357763,1358174-1358266	AT1G04820.1 CDS  gene_syn F13M7.19, TUA4, TUBULIN ALPHA-4 CHAIN  gene TUA4  function Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|18433157|IDA  go_component tubulin complex|GO:0045298|1498608|ISS  go_process microtubule-based process|GO:0007017|1498608|TAS  go_function structural constituent of cytoskeleton|GO:0005200|1498608|ISS  product TUA4; structural constituent of cytoskeleton  note TUA4; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process; LOCATED IN: cytosol, tubulin complex, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin, conserved site (InterPro:IPR017975), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUA2; structural constituent of cytoskeleton (TAIR:AT1G50010.1); Has 16390 Blast hits to 16316 proteins in 3499 species: Archae - 0; Bacteria - 25; Metazoa - 3558; Fungi - 9031; Plants - 1008; Viruses - 0; Other Eukaryotes - 2768 (source: NCBI BLink).  protein_id AT1G04820.1p  transcript_id AT1G04820.1  protein_id AT1G04820.1p  transcript_id AT1G04820.1  
At1g04830	chr1:001359087	0.0	C/1359087-1359251,1359381-1359497,1359720-1359899,1360225-1360353,1360438-1360536,1360680-1360832,1361075-1361179,1361318-1361410,1361539-1361844	AT1G04830.1 CDS  gene_syn F13M7.18, F13M7_18  go_component intracellular|GO:0005622||IEA  go_process regulation of Rab GTPase activity|GO:0032313||IEA  go_function RAB GTPase activator activity|GO:0005097||IEA  product RabGAP/TBC domain-containing protein  note RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: RabGAP/TBC domain-containing protein (TAIR:AT4G13730.1); Has 2859 Blast hits to 2782 proteins in 166 species: Archae - 0; Bacteria - 2; Metazoa - 1558; Fungi - 436; Plants - 302; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink).  protein_id AT1G04830.1p  transcript_id AT1G04830.1  protein_id AT1G04830.1p  transcript_id AT1G04830.1  
At1g04840	chr1:001362867	0.0	C/1362867-1363699,1363798-1364962	AT1G04840.1 CDS  gene_syn F13M7.17, F13M7_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G08070.1); Has 14411 Blast hits to 5349 proteins in 182 species: Archae - 0; Bacteria - 4; Metazoa - 156; Fungi - 83; Plants - 13901; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G04840.1p  transcript_id AT1G04840.1  protein_id AT1G04840.1p  transcript_id AT1G04840.1  
At1g04850	chr1:001365311	0.0	C/1365311-1365487,1365612-1365731,1365873-1365950,1366039-1366128,1366218-1366299,1366391-1366458,1366601-1366661,1366807-1366886,1367147-1367223,1367613-1367708,1367790-1367934,1368539-1368706	AT1G04850.1 CDS  gene_syn F13M7.16, F13M7_16  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product ubiquitin-associated (UBA)/TS-N domain-containing protein  note ubiquitin-associated (UBA)/TS-N domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), PUG (InterPro:IPR006567), Zinc finger, C2H2-type (InterPro:IPR007087), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48690.1); Has 17438 Blast hits to 9965 proteins in 571 species: Archae - 30; Bacteria - 1031; Metazoa - 7907; Fungi - 1971; Plants - 445; Viruses - 50; Other Eukaryotes - 6004 (source: NCBI BLink).  protein_id AT1G04850.1p  transcript_id AT1G04850.1  protein_id AT1G04850.1p  transcript_id AT1G04850.1  
At1g04860	chr1:001369306	0.0	C/1369306-1369546,1369646-1372290	AT1G04860.1 CDS  gene_syn ATUBP2, F13M7.15, F13M7_15, UBIQUITIN-SPECIFIC PROTEASE 2, UBP2  gene UBP2  function Encodes a ubiquitin-specific protease.  go_component chloroplast|GO:0009507|15028209|IDA  go_component proteasome complex|GO:0000502|12663224|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|12663224|TAS  go_function ubiquitin-specific protease activity|GO:0004843|11115897|IMP  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP2 (UBIQUITIN-SPECIFIC PROTEASE 2); ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 2 (UBP2); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP1 (UBIQUITIN-SPECIFIC PROTEASE 1); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding (TAIR:AT2G32780.1); Has 7951 Blast hits to 5108 proteins in 200 species: Archae - 0; Bacteria - 38; Metazoa - 4439; Fungi - 1245; Plants - 807; Viruses - 5; Other Eukaryotes - 1417 (source: NCBI BLink).  protein_id AT1G04860.1p  transcript_id AT1G04860.1  protein_id AT1G04860.1p  transcript_id AT1G04860.1  
At1g04870	chr1:001373485	0.0	C/1373485-1373661,1373751-1373834,1373917-1374102,1374248-1374437,1374742-1374847,1375029-1375128	AT1G04870.1 CDS  gene_syn ATPRMT10, F13M7.14, F13M7_14, PRMT10  gene PRMT10  function Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.  go_process vegetative to reproductive phase transition|GO:0010228|18660432|IGI  go_function methyltransferase activity|GO:0008168||ISS  product PRMT10; methyltransferase  note PRMT10; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: vegetative to reproductive phase transition; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6); methyltransferase (TAIR:AT3G20020.1); Has 1207 Blast hits to 1203 proteins in 206 species: Archae - 0; Bacteria - 10; Metazoa - 723; Fungi - 161; Plants - 137; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G04870.1p  transcript_id AT1G04870.1  protein_id AT1G04870.1p  transcript_id AT1G04870.1  
At1g04870	chr1:001373485	0.0	C/1373485-1373661,1373751-1373834,1373917-1374102,1374248-1374437,1374742-1374847,1375029-1375221,1375383-1375598	AT1G04870.2 CDS  gene_syn ATPRMT10, F13M7.14, F13M7_14, PRMT10  gene PRMT10  function Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.  go_component cytoplasm|GO:0005737||IEA  go_process vegetative to reproductive phase transition|GO:0010228|18007657|IMP  go_process peptidyl-arginine methylation, to asymmetrical-dimethyl arginine|GO:0019919|18007657|IDA  go_function histone-arginine N-methyltransferase activity|GO:0008469|18007657|IDA  go_function [myelin basic protein]-arginine N-methyltransferase activity|GO:0016277|18007657|IDA  go_function protein-arginine omega-N monomethyltransferase activity|GO:0035241|18007657|IDA  go_function protein-arginine omega-N asymmetric methyltransferase activity|GO:0035242|18007657|IDA  go_process vegetative to reproductive phase transition|GO:0010228|18660432|IGI  go_function methyltransferase activity|GO:0008168||ISS  product PRMT10; [myelin basic protein]-arginine N-methyltransferase/ histone-arginine N-methyltransferase/ methyltransferase/ protein-arginine omega-N asymmetric methyltransferase/ protein-arginine omega-N monomethyltransferase  note PRMT10; FUNCTIONS IN: histone-arginine N-methyltransferase activity, methyltransferase activity, protein-arginine omega-N asymmetric methyltransferase activity, [myelin basic protein]-arginine N-methyltransferase activity, protein-arginine omega-N monomethyltransferase activity; INVOLVED IN: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine, vegetative to reproductive phase transition; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal L11 methyltransferase (InterPro:IPR010456); BEST Arabidopsis thaliana protein match is: PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6); methyltransferase (TAIR:AT3G20020.1); Has 2142 Blast hits to 2134 proteins in 448 species: Archae - 30; Bacteria - 525; Metazoa - 975; Fungi - 166; Plants - 175; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G04870.2p  transcript_id AT1G04870.2  protein_id AT1G04870.2p  transcript_id AT1G04870.2  
At1g04880	chr1:001376106	0.0	C/1376106-1376525,1376620-1377035,1377139-1377261,1377354-1377510,1377665-1377743,1378113-1378264	AT1G04880.1 CDS  gene_syn F13M7.13, F13M7_13  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein  note high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76110.1); Has 2702 Blast hits to 2465 proteins in 232 species: Archae - 0; Bacteria - 4; Metazoa - 1928; Fungi - 217; Plants - 242; Viruses - 2; Other Eukaryotes - 309 (source: NCBI BLink).  protein_id AT1G04880.1p  transcript_id AT1G04880.1  protein_id AT1G04880.1p  transcript_id AT1G04880.1  
At1g04890	chr1:001381116	0.0	C/1381116-1381181,1381276-1382249,1382351-1382546	AT1G04890.1 CDS  gene_syn F13M7.12, F13M7_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Intermediate filament protein, conserved site (InterPro:IPR018039), Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13630.1); Has 6609 Blast hits to 4661 proteins in 382 species: Archae - 48; Bacteria - 283; Metazoa - 4004; Fungi - 343; Plants - 346; Viruses - 6; Other Eukaryotes - 1579 (source: NCBI BLink).  protein_id AT1G04890.1p  transcript_id AT1G04890.1  protein_id AT1G04890.1p  transcript_id AT1G04890.1  
At1g04900	chr1:001383912	0.0	W/1383912-1384040,1384340-1384451,1384659-1384741,1384837-1384902,1385401-1385501,1385647-1385765,1386109-1386149,1386250-1386338,1386410-1386569,1386641-1386757,1387024-1387068,1387203-1387334,1387427-1387561	AT1G04900.1 CDS  gene_syn F13M7.11, F13M7_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF185 (InterPro:IPR003788); Has 159 Blast hits to 155 proteins in 81 species: Archae - 0; Bacteria - 35; Metazoa - 2; Fungi - 68; Plants - 25; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G04900.1p  transcript_id AT1G04900.1  protein_id AT1G04900.1p  transcript_id AT1G04900.1  
At1g04910	chr1:001388101	0.0	C/1388101-1388715,1388881-1389010,1389204-1389487,1389581-1389704,1389993-1390081,1390264-1390334,1390451-1390529,1390777-1390936,1391067-1391074	AT1G04910.1 CDS  gene_syn F13M7.10, F13M7_10  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22460.1); Has 440 Blast hits to 425 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04910.1p  transcript_id AT1G04910.1  protein_id AT1G04910.1p  transcript_id AT1G04910.1  
At1g04920	chr1:001391674	0.0	C/1391674-1391950,1392056-1392183,1392257-1393192,1393269-1393331,1393480-1393710,1393796-1393927,1394014-1394148,1394231-1394926,1395008-1395071,1395145-1395377,1395463-1395756	AT1G04920.1 CDS  gene_syn ATSPS3F, F13M7.9, F13M7_9, sucrose phosphate synthase 3F  gene ATSPS3F  function Encodes a protein with putative sucrose-phosphate synthase activity.  go_process sucrose metabolic process|GO:0005985||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function sucrose-phosphate synthase activity|GO:0046524|16876912|RCA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATSPS3F (sucrose phosphate synthase 3F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups  note sucrose phosphate synthase 3F (ATSPS3F); FUNCTIONS IN: sucrose-phosphate synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria (InterPro:IPR006380), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: ATSPS1F (sucrose phosphate synthase 1F); sucrose-phosphate synthase/ transferase, transferring glycosyl groups (TAIR:AT5G20280.1); Has 5739 Blast hits to 5634 proteins in 888 species: Archae - 231; Bacteria - 3207; Metazoa - 12; Fungi - 66; Plants - 485; Viruses - 0; Other Eukaryotes - 1738 (source: NCBI BLink).  protein_id AT1G04920.1p  transcript_id AT1G04920.1  protein_id AT1G04920.1p  transcript_id AT1G04920.1  
At1g04930	chr1:001396546	0.0	C/1396546-1396627,1396786-1396865,1397011-1397124,1397497-1397577,1397668-1397707,1397830-1397882,1398440-1398988	AT1G04930.1 CDS  gene_syn F13M7.8, F13M7_8  go_component chloroplast|GO:0009507||IEA  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1); Has 1563 Blast hits to 1268 proteins in 183 species: Archae - 0; Bacteria - 127; Metazoa - 510; Fungi - 165; Plants - 332; Viruses - 182; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G04930.1p  transcript_id AT1G04930.1  protein_id AT1G04930.1p  transcript_id AT1G04930.1  
At1g04940	chr1:001399588	0.0	W/1399588-1399774,1399979-1400616	AT1G04940.1 CDS  gene_syn F13M7.7, F13M7_7, TIC20, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20  gene TIC20  function Tic20 is believed to function as a component of the protein-conducting channel at the inner envelope membrane. Genes AT1G04940 and AT1G04945 were switched for the TAIR7 genome release to give consistency with MIPs annotation.  go_component membrane|GO:0016020|11152613|ISS  product TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)  note TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20 (TIC20); LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) (TAIR:AT4G03320.1); Has 210 Blast hits to 209 proteins in 59 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G04940.1p  transcript_id AT1G04940.1  protein_id AT1G04940.1p  transcript_id AT1G04940.1  
At1g04945	chr1:001400969	0.0	W/1400969-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402520,1402596-1402651	AT1G04945.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 296 Blast hits to 294 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 94; Plants - 29; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G04945.1p  transcript_id AT1G04945.1  protein_id AT1G04945.1p  transcript_id AT1G04945.1  
At1g04945	chr1:001400969	0.0	W/1400969-1401155,1401303-1401507,1401676-1401744,1401846-1401978,1402067-1402651	AT1G04945.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 296 Blast hits to 294 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 94; Plants - 29; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G04945.2p  transcript_id AT1G04945.2  protein_id AT1G04945.2p  transcript_id AT1G04945.2  
At1g04950	chr1:001403606	0.0	C/1403606-1404112,1404201-1404326,1404617-1404749,1405110-1405234,1405560-1405655,1405743-1405880,1405957-1406057,1406339-1406447,1406541-1406642,1406872-1406958,1407059-1407184	AT1G04950.1 CDS  gene_syn ATTAF6, F13M7.6, F13M7_6, TAF6, TAFII59, TATA BOX ASSOCIATED FACTOR II 59, TBP-ASSOCIATED FACTOR 6  gene TAF6  function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription initiation|GO:0006352||ISS  go_process pollen tube growth|GO:0009860|16039640|IMP  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor  note TBP-ASSOCIATED FACTOR 6 (TAF6); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G54360.4); Has 371 Blast hits to 367 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 92; Plants - 42; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G04950.1p  transcript_id AT1G04950.1  protein_id AT1G04950.1p  transcript_id AT1G04950.1  
At1g04950	chr1:001403606	0.0	C/1403606-1404112,1404201-1404326,1404617-1404749,1405110-1405234,1405560-1405655,1405743-1405880,1405957-1406057,1406339-1406447,1406541-1406642,1406872-1406958,1407059-1407184	AT1G04950.2 CDS  gene_syn ATTAF6, F13M7.6, F13M7_6, TAF6, TAFII59, TATA BOX ASSOCIATED FACTOR II 59, TBP-ASSOCIATED FACTOR 6  gene TAF6  function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription initiation|GO:0006352||ISS  go_process pollen tube growth|GO:0009860|16039640|IMP  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor  note TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G54360.4); Has 371 Blast hits to 367 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 92; Plants - 42; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G04950.2p  transcript_id AT1G04950.2  protein_id AT1G04950.2p  transcript_id AT1G04950.2  
At1g04950	chr1:001403606	0.0	C/1403606-1404112,1404201-1404326,1404617-1404749,1405110-1405234,1405560-1405655,1405743-1405880,1405957-1406057,1406339-1406447,1406541-1406642,1406872-1406958,1407059-1407184	AT1G04950.3 CDS  gene_syn ATTAF6, F13M7.6, F13M7_6, TAF6, TAFII59, TATA BOX ASSOCIATED FACTOR II 59, TBP-ASSOCIATED FACTOR 6  gene TAF6  function Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_component nucleus|GO:0005634||ISS  go_process transcription initiation|GO:0006352||ISS  go_process pollen tube growth|GO:0009860|16039640|IMP  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF6 (TBP-ASSOCIATED FACTOR 6); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor  note TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT1G54360.4); Has 371 Blast hits to 367 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 182; Fungi - 92; Plants - 42; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G04950.3p  transcript_id AT1G04950.3  protein_id AT1G04950.3p  transcript_id AT1G04950.3  
At1g04960	chr1:001408021	0.0	C/1408021-1408200,1408458-1408514,1408617-1408694,1408797-1408829,1408931-1409005,1409352-1409441,1409528-1409629,1409756-1409823,1409952-1410033,1410185-1410318,1410619-1410673	AT1G04960.1 CDS  gene_syn F13M7.5, F13M7_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G27000.1); Has 95 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04960.1p  transcript_id AT1G04960.1  protein_id AT1G04960.1p  transcript_id AT1G04960.1  
At1g04960	chr1:001408021	0.0	C/1408021-1408200,1408458-1408514,1408617-1408694,1408797-1408829,1408931-1409005,1409352-1409441,1409528-1409629,1409756-1409823,1409952-1410033,1410185-1410424	AT1G04960.2 CDS  gene_syn F13M7.5, F13M7_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G27000.1); Has 95 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G04960.2p  transcript_id AT1G04960.2  protein_id AT1G04960.2p  transcript_id AT1G04960.2  
At1g04970	chr1:001411216	0.0	W/1411216-1411623,1411915-1412054,1412160-1412511,1412656-1412904,1413017-1413142,1413240-1413431	AT1G04970.1 CDS  gene_syn F13M7.4, F13M7_4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function lipid binding|GO:0008289||IEA  go_process biological_process|GO:0008150||ND  go_function lipid binding|GO:0008289||ISS  product lipid-binding serum glycoprotein family protein  note lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2); Has 354 Blast hits to 349 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 309; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G04970.1p  transcript_id AT1G04970.1  protein_id AT1G04970.1p  transcript_id AT1G04970.1  
At1g04970	chr1:001411924	0.0	W/1411924-1412054,1412160-1412511,1412656-1412904,1413017-1413142,1413240-1413431	AT1G04970.2 CDS  gene_syn F13M7.4, F13M7_4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_function lipid binding|GO:0008289||IEA  go_process biological_process|GO:0008150||ND  go_function lipid binding|GO:0008289||ISS  product lipid-binding serum glycoprotein family protein  note lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bactericidal permeability-increasing protein, alpha/beta domain (InterPro:IPR017943), Lipid-binding serum glycoprotein, N-terminal (InterPro:IPR017942), Lipid-binding serum glycoprotein, C-terminal (InterPro:IPR001124); BEST Arabidopsis thaliana protein match is: lipid-binding serum glycoprotein family protein (TAIR:AT3G20270.2); Has 311 Blast hits to 306 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G04970.2p  transcript_id AT1G04970.2  protein_id AT1G04970.2p  transcript_id AT1G04970.2  
At1g04980	chr1:001413869	0.0	C/1413869-1414055,1414156-1414302,1414417-1414562,1414646-1414822,1414993-1415092,1415197-1415375,1415450-1415563,1415675-1415833,1415986-1416120	AT1G04980.1 CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDI10, ATPDIL2-2, F13M7.3, F13M7_3, PDI-LIKE 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE  gene ATPDIL2-2  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  product ATPDIL2-2 (PDI-LIKE 2-2); protein disulfide isomerase  note PDI-LIKE 2-2 (ATPDIL2-2); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788), Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL2-3 (PDI-LIKE 2-3); protein disulfide isomerase (TAIR:AT2G32920.1); Has 25085 Blast hits to 12745 proteins in 1689 species: Archae - 232; Bacteria - 9968; Metazoa - 5140; Fungi - 1394; Plants - 1648; Viruses - 34; Other Eukaryotes - 6669 (source: NCBI BLink).  protein_id AT1G04980.1p  transcript_id AT1G04980.1  protein_id AT1G04980.1p  transcript_id AT1G04980.1  
At1g04985	chr1:001416563	0.0	C/1416563-1416779,1416869-1416978,1417326-1417390,1417974-1418046,1418175-1418291	AT1G04985.1 CDS  gene_syn F13M7.2, F13M7_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G04985.1p  transcript_id AT1G04985.1  protein_id AT1G04985.1p  transcript_id AT1G04985.1  
At1g04990	chr1:001419368	0.0	C/1419368-1419658,1419787-1420032,1420104-1420373,1420448-1420564,1420825-1420881,1420973-1421130,1421379-1421454	AT1G04990.1 CDS  gene_syn F13M7.1, F13M7_1  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: ZFN2 (ZINC FINGER NUCLEASE 2); DNA binding / nuclease/ nucleic acid binding (TAIR:AT2G32930.1); Has 1255 Blast hits to 799 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 533; Fungi - 168; Plants - 432; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G04990.1p  transcript_id AT1G04990.1  protein_id AT1G04990.1p  transcript_id AT1G04990.1  
At1g04990	chr1:001419368	0.0	C/1419368-1419658,1419787-1420032,1420104-1420373,1420448-1420564,1420825-1420881,1420973-1421130,1421379-1421454	AT1G04990.2 CDS  gene_syn F13M7.1, F13M7_1  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: ZFN2 (ZINC FINGER NUCLEASE 2); DNA binding / nuclease/ nucleic acid binding (TAIR:AT2G32930.1); Has 1255 Blast hits to 799 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 533; Fungi - 168; Plants - 432; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G04990.2p  transcript_id AT1G04990.2  protein_id AT1G04990.2p  transcript_id AT1G04990.2  
At1g05000	chr1:001425660	0.0	W/1425660-1425925,1426016-1426109,1426235-1426330,1427899-1427956,1428071-1428114,1428208-1428393	AT1G05000.2 CDS  gene_syn T7A14.14, T7A14_14  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function phosphoprotein phosphatase activity|GO:0004721||ISS  product tyrosine specific protein phosphatase family protein  note tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT2G32960.1).  protein_id AT1G05000.2p  transcript_id AT1G05000.2  protein_id AT1G05000.2p  transcript_id AT1G05000.2  
At1g05000	chr1:001425660	0.0	W/1425660-1425925,1426016-1426109,1427899-1427956,1428071-1428114,1428208-1428393	AT1G05000.1 CDS  gene_syn T7A14.14, T7A14_14  go_process dephosphorylation|GO:0016311||IEA  go_function protein tyrosine phosphatase activity|GO:0004725||IEA  go_function phosphatase activity|GO:0016791||IEA  go_component cellular_component|GO:0005575||ND  go_function phosphoprotein phosphatase activity|GO:0004721||ISS  product tyrosine specific protein phosphatase family protein  note tyrosine specific protein phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: tyrosine specific protein phosphatase family protein (TAIR:AT2G32960.1); Has 450 Blast hits to 437 proteins in 100 species: Archae - 0; Bacteria - 32; Metazoa - 3; Fungi - 253; Plants - 83; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G05000.1p  transcript_id AT1G05000.1  protein_id AT1G05000.1p  transcript_id AT1G05000.1  
At1g05010	chr1:001431419	0.0	C/1431419-1431724,1431807-1432140,1432292-1432518,1432591-1432695	AT1G05010.1 CDS  gene_syn 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE, ACO4, EAT1, EFE, ETHYLENE-FORMING ENZYME, T7A14.12, T7A14_12, ethylene forming enzyme  gene EFE  function Encodes 1-aminocyclopropane-1-carboxylate oxidase  go_process response to fungus|GO:0009620|19220788|IEP  go_process ethylene biosynthetic process|GO:0009693|16311726|TAS  go_process ethylene biosynthetic process|GO:0009693|8262380|ISS  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815|8262380|ISS  product EFE (ETHYLENE-FORMING ENZYME); 1-aminocyclopropane-1-carboxylate oxidase  note ETHYLENE-FORMING ENZYME (EFE); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: response to fungus, ethylene biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ACO2 (ACC OXIDASE 2); 1-aminocyclopropane-1-carboxylate oxidase (TAIR:AT1G62380.1); Has 5895 Blast hits to 5879 proteins in 688 species: Archae - 0; Bacteria - 721; Metazoa - 111; Fungi - 657; Plants - 3074; Viruses - 0; Other Eukaryotes - 1332 (source: NCBI BLink).  protein_id AT1G05010.1p  transcript_id AT1G05010.1  protein_id AT1G05010.1p  transcript_id AT1G05010.1  
At1g05020	chr1:001435384	0.0	C/1435384-1437345	AT1G05020.1 CDS  gene_syn T7A14.11, T7A14_11  go_component clathrin coat|GO:0030118||IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT4G02650.1); Has 434 Blast hits to 434 proteins in 61 species: Archae - 0; Bacteria - 2; Metazoa - 179; Fungi - 30; Plants - 211; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G05020.1p  transcript_id AT1G05020.1  protein_id AT1G05020.1p  transcript_id AT1G05020.1  
At1g05030	chr1:001438324	0.0	C/1438324-1438515,1438596-1438710,1438811-1438899,1438985-1439058,1439158-1439304,1439502-1439658,1439735-1439828,1439898-1440010,1440234-1440333,1440446-1440646,1441003-1441126,1441217-1441385	AT1G05030.1 CDS  gene_syn T7A14.10, T7A14_10  go_component mitochondrion|GO:0005739||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product hexose transporter, putative  note hexose transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrion, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: PGLCT (PLASTIDIC GLC TRANSLOCATOR); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT5G16150.3); Has 20809 Blast hits to 20431 proteins in 1317 species: Archae - 299; Bacteria - 8398; Metazoa - 4650; Fungi - 4439; Plants - 1442; Viruses - 0; Other Eukaryotes - 1581 (source: NCBI BLink).  protein_id AT1G05030.1p  transcript_id AT1G05030.1  protein_id AT1G05030.1p  transcript_id AT1G05030.1  
At1g05040	chr1:001447758	0.0	C/1447758-1447847,1447954-1448056,1448141-1448448	AT1G05040.1 CDS  gene_syn T7A14.9, T7A14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05040.1p  transcript_id AT1G05040.1  protein_id AT1G05040.1p  transcript_id AT1G05040.1  
At1g05040	chr1:001447891	0.0	C/1447891-1448056,1448141-1448448	AT1G05040.2 CDS  gene_syn T7A14.9, T7A14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; Has 11 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05040.2p  transcript_id AT1G05040.2  protein_id AT1G05040.2p  transcript_id AT1G05040.2  
At1g05055	chr1:001448913	0.0	C/1448913-1449061,1449237-1449615,1449713-1450174,1450577-1450852	AT1G05055.1 CDS  gene_syn AT1G05050, ATGTF2H2, GENERAL TRANSCRIPTION FACTOR IIH 2, GTF2H2  gene GTF2H2  function Member of transcription factor TFIIH complex. Involved in transcription and DNA repair and interacts with AtXPD.  go_component holo TFIIH complex|GO:0005675|16623910|IGI  go_process nucleotide-excision repair|GO:0006289|16623910|IGI  go_process regulation of transcription from RNA polymerase II promoter, global|GO:0006358|16623910|IGI  go_function general RNA polymerase II transcription factor activity|GO:0016251|16623910|IGI  product GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2); general RNA polymerase II transcription factor  note GENERAL TRANSCRIPTION FACTOR IIH 2 (GTF2H2); FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter, global, nucleotide-excision repair; LOCATED IN: holo TFIIH complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), TFIIH basal transcription factor complex, subunit SSL1 (InterPro:IPR012170), Zinc finger, RING-type (InterPro:IPR001841), TFIIH C1-like, C-terminal (InterPro:IPR004595), von Willebrand factor, type A (InterPro:IPR002035); Has 355 Blast hits to 347 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 162; Fungi - 101; Plants - 21; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G05055.1p  transcript_id AT1G05055.1  protein_id AT1G05055.1p  transcript_id AT1G05055.1  
At1g05060	chr1:001451255	0.0	C/1451255-1451362,1451451-1451537,1451665-1451756,1452295-1452419,1452509-1452858	AT1G05060.1 CDS  gene_syn T7A14.7, T7A14_7  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05060.1p  transcript_id AT1G05060.1  protein_id AT1G05060.1p  transcript_id AT1G05060.1  
At1g05061	chr1:001453216	0.0	C/1453216-1454260	AT1G05061.1 pseudogenic_transcript  pseudo  function Pseudogene of AT2G32630; pentatricopeptide (PPR) repeat-containing protein  
At1g05065	chr1:001454969	0.0	C/1454969-1455220	AT1G05065.1 CDS  gene_syn CLAVATA3/ESR-RELATED 20, CLE20  gene CLE20  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE20 (CLAVATA3/ESR-RELATED 20); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 20 (CLE20); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05065.1p  transcript_id AT1G05065.1  protein_id AT1G05065.1p  transcript_id AT1G05065.1  
At1g05070	chr1:001457172	0.0	C/1457172-1457518,1457618-1457641,1458348-1458531	AT1G05070.1 CDS  gene_syn T7A14.6, T7A14_6  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32580.1); Has 55 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G05070.1p  transcript_id AT1G05070.1  protein_id AT1G05070.1p  transcript_id AT1G05070.1  
At1g05080	chr1:001459091	0.0	W/1459091-1459978,1460063-1460197,1460283-1460579	AT1G05080.1 CDS  gene_syn T7A14.5, T7A14_5  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22000.1); Has 1180 Blast hits to 1150 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1178; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05080.1p  transcript_id AT1G05080.1  protein_id AT1G05080.1p  transcript_id AT1G05080.1  
At1g05085	chr1:001460988	0.0	W/1460988-1461125,1461215-1461264,1461395-1461552,1461642-1461670	AT1G05085.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05085.1p  transcript_id AT1G05085.1  protein_id AT1G05085.1p  transcript_id AT1G05085.1  
At1g05090	chr1:001463202	0.0	W/1463202-1463528,1463649-1464090,1464148-1465324,1465448-1465622	AT1G05090.1 CDS  gene_syn T7A14.3, T7A14_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product dentin sialophosphoprotein-related  note dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT4G20720.1); Has 3317 Blast hits to 1175 proteins in 175 species: Archae - 2; Bacteria - 2415; Metazoa - 347; Fungi - 137; Plants - 84; Viruses - 1; Other Eukaryotes - 331 (source: NCBI BLink).  protein_id AT1G05090.1p  transcript_id AT1G05090.1  protein_id AT1G05090.1p  transcript_id AT1G05090.1  
At1g05100	chr1:001469679	0.0	W/1469679-1470698	AT1G05100.1 CDS  gene_syn MAPKKK18, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 18, T7A14.2, T7A14_2  gene MAPKKK18  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MAPKKK18; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK18; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK17; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G32510.1); Has 87138 Blast hits to 86246 proteins in 3138 species: Archae - 46; Bacteria - 7335; Metazoa - 38577; Fungi - 7779; Plants - 17445; Viruses - 444; Other Eukaryotes - 15512 (source: NCBI BLink).  protein_id AT1G05100.1p  transcript_id AT1G05100.1  protein_id AT1G05100.1p  transcript_id AT1G05100.1  
At1g05120	chr1:001471624	0.0	C/1471624-1471696,1471780-1471860,1471948-1472036,1472130-1472282,1472373-1472477,1472603-1472833,1473009-1473131,1473238-1473307,1473394-1473479,1473671-1473817,1473921-1473984,1474095-1474168,1474253-1474375,1474596-1475539,1475631-1475723,1476022-1476067	AT1G05120.1 CDS  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function ATP binding|GO:0005524||ISS  product SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein  note SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA repair protein, putative (TAIR:AT1G02670.1); Has 19621 Blast hits to 9987 proteins in 900 species: Archae - 87; Bacteria - 4298; Metazoa - 5750; Fungi - 4385; Plants - 1343; Viruses - 172; Other Eukaryotes - 3586 (source: NCBI BLink).  protein_id AT1G05120.1p  transcript_id AT1G05120.1  protein_id AT1G05120.1p  transcript_id AT1G05120.1  
At1g05135	chr1:001477500	0.0	C/1477500-1478821	AT1G05135.1 pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein, isoform contains a non-consensus TG acceptor site at intron.  
At1g05136	chr1:001478923	0.0	W/1478923-1479063	AT1G05136.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G05136.1p  transcript_id AT1G05136.1  protein_id AT1G05136.1p  transcript_id AT1G05136.1  
At1g05140	chr1:001482681	0.0	W/1482681-1484006	AT1G05140.1 CDS  gene_syn YUP8H12.25, YUP8H12_25  go_component chloroplast|GO:0009507|18431481|IDA  go_process proteolysis|GO:0006508||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function protein binding|GO:0005515||IEA  go_component plastid|GO:0009536|10891285|ISS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product membrane-associated zinc metalloprotease, putative  note membrane-associated zinc metalloprotease, putative; FUNCTIONS IN: protein binding, metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: membrane-associated zinc metalloprotease, putative (TAIR:AT2G32480.1); Has 6877 Blast hits to 5459 proteins in 1201 species: Archae - 28; Bacteria - 3634; Metazoa - 12; Fungi - 4; Plants - 40; Viruses - 0; Other Eukaryotes - 3159 (source: NCBI BLink).  protein_id AT1G05140.1p  transcript_id AT1G05140.1  protein_id AT1G05140.1p  transcript_id AT1G05140.1  
At1g05150	chr1:001484280	0.0	C/1484280-1486706	AT1G05150.1 CDS  gene_syn YUP8H12.24, YUP8H12_24  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: binding, zinc ion binding, calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), EF hand (InterPro:IPR018248), Tetratricopeptide TPR2 (InterPro:IPR013105), EF-HAND 2 (InterPro:IPR018249), Tetratricopeptide region (InterPro:IPR013026), Zinc finger, ZZ-type (InterPro:IPR000433); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT2G32450.1); Has 27369 Blast hits to 12594 proteins in 993 species: Archae - 1214; Bacteria - 11971; Metazoa - 3725; Fungi - 450; Plants - 518; Viruses - 0; Other Eukaryotes - 9491 (source: NCBI BLink).  protein_id AT1G05150.1p  transcript_id AT1G05150.1  protein_id AT1G05150.1p  transcript_id AT1G05150.1  
At1g05160	chr1:001487640	0.0	C/1487640-1487730,1487812-1487936,1488019-1488125,1488220-1488298,1488390-1488479,1488561-1488824,1488909-1489386,1489590-1489828	AT1G05160.1 CDS  gene_syn ATKAO1, CYP88A3, CYTOCHROME P450 88 A3, ENT-KAURENOIC ACID OXYDASE 1, KAO1, YUP8H12.23, YUP8H12_23  gene CYP88A3  function Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family.  go_component endoplasmic reticulum|GO:0005783|11722763|IDA  go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS  go_function oxygen binding|GO:0019825|11172076|ISS  go_function ent-kaurenoate oxidase activity|GO:0051777|11172076|IDA  product CYP88A3 (CYTOCHROME P450 88 A3); ent-kaurenoate oxidase/ oxygen binding  note CYTOCHROME P450 88 A3 (CYP88A3); FUNCTIONS IN: ent-kaurenoate oxidase activity, oxygen binding; INVOLVED IN: gibberellin biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450, B-class (InterPro:IPR002397), Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2); ent-kaurenoate oxidase/ oxygen binding (TAIR:AT2G32440.1); Has 25273 Blast hits to 25227 proteins in 1332 species: Archae - 51; Bacteria - 4689; Metazoa - 9924; Fungi - 3918; Plants - 4810; Viruses - 6; Other Eukaryotes - 1875 (source: NCBI BLink).  protein_id AT1G05160.1p  transcript_id AT1G05160.1  protein_id AT1G05160.1p  transcript_id AT1G05160.1  
At1g05170	chr1:001491460	0.0	C/1491460-1491608,1491940-1492049,1492136-1492261,1492336-1492423,1492528-1492648,1492733-1492805,1492889-1492952,1493029-1493240,1493328-1493392,1493495-1493591,1493822-1493931	AT1G05170.1 CDS  gene_syn YUP8H12.22, YUP8H12_22  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT2G32430.1); Has 936 Blast hits to 933 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 606; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G05170.1p  transcript_id AT1G05170.1  protein_id AT1G05170.1p  transcript_id AT1G05170.1  
At1g05170	chr1:001491460	0.0	C/1491460-1491608,1491940-1492049,1492136-1492261,1492336-1492423,1492528-1492648,1492733-1492805,1492889-1492952,1493029-1493240,1493328-1493401,1493495-1493591,1493822-1493931	AT1G05170.2 CDS  gene_syn YUP8H12.22, YUP8H12_22  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT2G32430.1); Has 928 Blast hits to 924 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 597; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G05170.2p  transcript_id AT1G05170.2  protein_id AT1G05170.2p  transcript_id AT1G05170.2  
At1g05180	chr1:001498357	0.0	C/1498357-1498440,1498566-1498746,1498836-1498919,1499229-1499314,1499456-1499618,1499706-1499779,1499891-1499979,1500156-1500249,1500332-1500485,1500600-1500679,1500804-1500914,1501167-1501190,1501289-1501330,1501425-1501469	AT1G05180.2 CDS  gene_syn AUXIN RESISTANT 1, AUXIN RESISTANT PROTEIN 1, AXR1, YUP8H12.21, YUP8H12_21  gene AXR1  function Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.  go_component nucleus|GO:0005634|9624055|IEP  go_process DNA repair|GO:0006281|18434413|IMP  go_process response to water deprivation|GO:0009414|8979397|IMP  go_process auxin mediated signaling pathway|GO:0009734|7658471|IMP  go_process leaf morphogenesis|GO:0009965|16971475|IGI  go_process auxin homeostasis|GO:0010252|17655650|NAS  go_process protein ubiquitination|GO:0016567|17655650|IGI  go_function small protein activating enzyme activity|GO:0008641|9624055|IDA  go_function small protein activating enzyme activity|GO:0008641||ISS  product AXR1 (AUXIN RESISTANT 1); small protein activating enzyme  note AUXIN RESISTANT 1 (AXR1); FUNCTIONS IN: small protein activating enzyme activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXL (AXR1-LIKE); binding / catalytic (TAIR:AT2G32410.1); Has 474 Blast hits to 468 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 247; Fungi - 100; Plants - 83; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G05180.2p  transcript_id AT1G05180.2  protein_id AT1G05180.2p  transcript_id AT1G05180.2  
At1g05180	chr1:001498357	0.0	C/1498357-1498440,1498566-1498746,1498836-1498919,1499229-1499314,1499456-1499618,1499706-1499779,1499891-1499979,1500156-1500249,1500332-1500485,1500600-1500679,1500804-1500914,1501167-1501330,1501425-1501597,1501690-1501775	AT1G05180.1 CDS  gene_syn AUXIN RESISTANT 1, AUXIN RESISTANT PROTEIN 1, AXR1, YUP8H12.21, YUP8H12_21  gene AXR1  function Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.  go_component nucleus|GO:0005634|9624055|IEP  go_process DNA repair|GO:0006281|18434413|IMP  go_process response to water deprivation|GO:0009414|8979397|IMP  go_process auxin mediated signaling pathway|GO:0009734|7658471|IMP  go_process leaf morphogenesis|GO:0009965|16971475|IGI  go_process auxin homeostasis|GO:0010252|17655650|NAS  go_process protein ubiquitination|GO:0016567|17655650|IGI  go_function small protein activating enzyme activity|GO:0008641|9624055|IDA  go_function small protein activating enzyme activity|GO:0008641||ISS  product AXR1 (AUXIN RESISTANT 1); small protein activating enzyme  note AUXIN RESISTANT 1 (AXR1); FUNCTIONS IN: small protein activating enzyme activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXL (AXR1-LIKE); binding / catalytic (TAIR:AT2G32410.1); Has 4497 Blast hits to 4023 proteins in 826 species: Archae - 102; Bacteria - 1503; Metazoa - 1091; Fungi - 545; Plants - 256; Viruses - 0; Other Eukaryotes - 1000 (source: NCBI BLink).  protein_id AT1G05180.1p  transcript_id AT1G05180.1  protein_id AT1G05180.1p  transcript_id AT1G05180.1  
At1g05180	chr1:001498524	0.0	C/1498524-1498746,1498836-1498919,1499229-1499314,1499456-1499618,1499706-1499779,1499891-1499979,1500156-1500249,1500332-1500485,1500600-1500679,1500804-1500914,1501167-1501190,1501289-1501330,1501425-1501469	AT1G05180.3 CDS  gene_syn AUXIN RESISTANT 1, AUXIN RESISTANT PROTEIN 1, AXR1, YUP8H12.21, YUP8H12_21  gene AXR1  function Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.  go_component nucleus|GO:0005634|9624055|IEP  go_process DNA repair|GO:0006281|18434413|IMP  go_process response to water deprivation|GO:0009414|8979397|IMP  go_process auxin mediated signaling pathway|GO:0009734|7658471|IMP  go_process leaf morphogenesis|GO:0009965|16971475|IGI  go_process auxin homeostasis|GO:0010252|17655650|NAS  go_process protein ubiquitination|GO:0016567|17655650|IGI  go_function small protein activating enzyme activity|GO:0008641|9624055|IDA  go_function small protein activating enzyme activity|GO:0008641||ISS  product AXR1 (AUXIN RESISTANT 1); small protein activating enzyme  note AUXIN RESISTANT 1 (AXR1); FUNCTIONS IN: small protein activating enzyme activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXL (AXR1-LIKE); binding / catalytic (TAIR:AT2G32410.1); Has 362 Blast hits to 358 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 98; Plants - 62; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G05180.3p  transcript_id AT1G05180.3  protein_id AT1G05180.3p  transcript_id AT1G05180.3  
At1g05190	chr1:001502515	0.0	C/1502515-1502851,1502962-1503261,1503704-1503738	AT1G05190.1 CDS  gene_syn YUP8H12.20, YUP8H12_20, emb2394, embryo defective 2394  gene emb2394  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_process translation|GO:0006412||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function structural constituent of ribosome|GO:0003735||ISS  product emb2394 (embryo defective 2394); structural constituent of ribosome  note embryo defective 2394 (emb2394); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: embryonic development ending in seed dormancy, translation; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, conserved site-1 (InterPro:IPR002358); BEST Arabidopsis thaliana protein match is: ribosomal protein L6 family protein (TAIR:AT2G18400.1); Has 5749 Blast hits to 5749 proteins in 1580 species: Archae - 150; Bacteria - 2981; Metazoa - 10; Fungi - 116; Plants - 74; Viruses - 0; Other Eukaryotes - 2418 (source: NCBI BLink).  protein_id AT1G05190.1p  transcript_id AT1G05190.1  protein_id AT1G05190.1p  transcript_id AT1G05190.1  
At1g05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508433,1508529-1509002	AT1G05200.1 CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 3.4, ATGLR3.4, GLR3.4, GLUR3, GLUTAMATE RECEPTOR 3.4, LIGAND-GATED CHANNEL-LIKE PROTEIN PRECURSOR, YUP8H12.19, YUP8H12_19  gene ATGLR3.4  function member of Putative ligand-gated ion channel subunit family  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR3.4; intracellular ligand-gated ion channel  note ATGLR3.4; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR3.5 (GLUTAMATE RECEPTOR 3.5); intracellular ligand-gated ion channel (TAIR:AT2G32390.2); Has 5127 Blast hits to 5012 proteins in 418 species: Archae - 25; Bacteria - 894; Metazoa - 3648; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G05200.1p  transcript_id AT1G05200.1  protein_id AT1G05200.1p  transcript_id AT1G05200.1  
At1g05200	chr1:001505642	0.0	W/1505642-1505993,1506117-1507450,1507529-1507806,1507886-1507917,1508024-1508433,1508529-1509002	AT1G05200.2 CDS  gene_syn ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 3.4, ATGLR3.4, GLR3.4, GLUR3, GLUTAMATE RECEPTOR 3.4, LIGAND-GATED CHANNEL-LIKE PROTEIN PRECURSOR, YUP8H12.19, YUP8H12_19  gene ATGLR3.4  function member of Putative ligand-gated ion channel subunit family  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cellular calcium ion homeostasis|GO:0006874|11379626|NAS  go_process response to light stimulus|GO:0009416|11379626|NAS  go_function intracellular ligand-gated ion channel activity|GO:0005217||ISS  product ATGLR3.4; intracellular ligand-gated ion channel  note ATGLR3.4; FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: ATGLR3.5 (GLUTAMATE RECEPTOR 3.5); intracellular ligand-gated ion channel (TAIR:AT2G32390.2); Has 5127 Blast hits to 5012 proteins in 418 species: Archae - 25; Bacteria - 894; Metazoa - 3648; Fungi - 0; Plants - 313; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G05200.2p  transcript_id AT1G05200.2  protein_id AT1G05200.2p  transcript_id AT1G05200.2  
At1g05205	chr1:001509352	0.0	C/1509352-1509436,1509692-1509771,1510139-1510249	AT1G05205.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05205.1p  transcript_id AT1G05205.1  protein_id AT1G05205.1p  transcript_id AT1G05205.1  
At1g05210	chr1:001510469	0.0	W/1510469-1510792,1511303-1511485	AT1G05210.1 CDS  gene_syn YUP8H12.18, YUP8H12_18  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32380.1); Has 101 Blast hits to 101 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 9; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G05210.1p  transcript_id AT1G05210.1  protein_id AT1G05210.1p  transcript_id AT1G05210.1  
At1g05220	chr1:001511943	0.0	W/1511943-1512263,1512495-1512656	AT1G05220.1 CDS  gene_syn YUP8H12.17, YUP8H12_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05210.1); Has 103 Blast hits to 103 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 10; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G05220.1p  transcript_id AT1G05220.1  protein_id AT1G05220.1p  transcript_id AT1G05220.1  
At1g05220	chr1:001511943	0.0	W/1511943-1512263,1512495-1512656	AT1G05220.2 CDS  gene_syn YUP8H12.17, YUP8H12_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05210.1); Has 103 Blast hits to 103 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 10; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G05220.2p  transcript_id AT1G05220.2  protein_id AT1G05220.2p  transcript_id AT1G05220.2  
At1g05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.1 CDS  gene_syn HDG2, HOMEODOMAIN GLABROUS 2, YUP8H12.16, YUP8H12_16  gene HDG2  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 2 (HDG2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor (TAIR:AT4G04890.1); Has 7135 Blast hits to 7078 proteins in 389 species: Archae - 0; Bacteria - 0; Metazoa - 5278; Fungi - 157; Plants - 1499; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G05230.1p  transcript_id AT1G05230.1  protein_id AT1G05230.1p  transcript_id AT1G05230.1  
At1g05230	chr1:001513388	0.0	C/1513388-1513744,1513825-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.2 CDS  gene_syn HDG2, HOMEODOMAIN GLABROUS 2, YUP8H12.16, YUP8H12_16  gene HDG2  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 2 (HDG2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor (TAIR:AT4G04890.1); Has 7135 Blast hits to 7078 proteins in 389 species: Archae - 0; Bacteria - 0; Metazoa - 5278; Fungi - 157; Plants - 1499; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G05230.2p  transcript_id AT1G05230.2  protein_id AT1G05230.2p  transcript_id AT1G05230.2  
At1g05230	chr1:001513388	0.0	C/1513388-1513744,1513831-1513920,1513994-1514265,1514350-1514524,1514590-1514790,1514862-1514963,1515038-1515451,1515821-1516009,1516587-1516704,1516783-1517024	AT1G05230.3 CDS  gene_syn HDG2, HOMEODOMAIN GLABROUS 2, YUP8H12.16, YUP8H12_16  gene HDG2  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor  note HOMEODOMAIN GLABROUS 2 (HDG2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor (TAIR:AT4G04890.1); Has 7111 Blast hits to 7056 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 5301; Fungi - 158; Plants - 1501; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT1G05230.3p  transcript_id AT1G05230.3  protein_id AT1G05230.3p  transcript_id AT1G05230.3  
At1g05240	chr1:001521202	0.0	W/1521202-1521414,1521504-1521689,1521783-1521948,1522035-1522447	AT1G05240.1 CDS  gene_syn YUP8H12.15  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: plant-type cell wall; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G05250.1); Has 2736 Blast hits to 2721 proteins in 173 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 33; Plants - 2677; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G05240.1p  transcript_id AT1G05240.1  protein_id AT1G05240.1p  transcript_id AT1G05240.1  
At1g05250	chr1:001525924	0.0	C/1525924-1526336,1526423-1526588,1526682-1526867,1526957-1527169	AT1G05250.1 CDS  gene_syn YUP8H12.14, YUP8H12_14  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G05240.1); Has 2736 Blast hits to 2721 proteins in 173 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 33; Plants - 2677; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G05250.1p  transcript_id AT1G05250.1  protein_id AT1G05250.1p  transcript_id AT1G05250.1  
At1g05260	chr1:001529827	0.0	W/1529827-1530039,1530148-1530336,1530430-1530592,1530856-1531271	AT1G05260.1 CDS  gene_syn PEROXIDASE PRECURSOR, RARE COLD INDUCIBLE GENE 3, RCI3, RCI3A, YUP8H12.13, YUP8H12_13  gene RCI3  function Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.  go_component endoplasmic reticulum|GO:0005783|12366797|ISS  go_process response to desiccation|GO:0009269|12366797|IMP  go_process response to cold|GO:0009409|12366797|IEP  go_process hyperosmotic salinity response|GO:0042538|12366797|IMP  go_function peroxidase activity|GO:0004601|12366797|IDA  go_function peroxidase activity|GO:0004601||ISS  product RCI3 (RARE COLD INDUCIBLE GENE 3); peroxidase  note RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, hyperosmotic salinity response, response to cold; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase 30 (PER30) (P30) (PRXR9) (TAIR:AT3G21770.1); Has 2893 Blast hits to 2877 proteins in 200 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 48; Plants - 2805; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G05260.1p  transcript_id AT1G05260.1  protein_id AT1G05260.1p  transcript_id AT1G05260.1  
At1g05270	chr1:001531806	0.0	C/1531806-1531934,1532019-1532130,1532264-1532364,1532484-1532597,1532730-1532834,1532917-1533000,1533352-1533411,1533503-1533550,1533943-1534305	AT1G05270.1 CDS  gene_syn YUP8H12.12, YUP8H12_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TraB family protein  note TraB family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32340.1); Has 515 Blast hits to 497 proteins in 174 species: Archae - 89; Bacteria - 148; Metazoa - 111; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G05270.1p  transcript_id AT1G05270.1  protein_id AT1G05270.1p  transcript_id AT1G05270.1  
At1g05280	chr1:001535444	0.0	C/1535444-1535473,1535585-1535887,1535975-1536211,1536297-1536708,1537011-1537414	AT1G05280.1 CDS  gene_syn YUP8H12.11, YUP8H12_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product fringe-related protein  note fringe-related protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G15240.1); Has 314 Blast hits to 310 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 116; Plants - 128; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G05280.1p  transcript_id AT1G05280.1  protein_id AT1G05280.1p  transcript_id AT1G05280.1  
At1g05290	chr1:001539152	0.0	C/1539152-1539296,1539384-1539694,1539782-1539970,1540082-1540546	AT1G05290.1 CDS  gene_syn YUP8H12.10, YUP8H12_10  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT3G21880.1); Has 837 Blast hits to 829 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 810; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G05290.1p  transcript_id AT1G05290.1  protein_id AT1G05290.1p  transcript_id AT1G05290.1  
At1g05291	chr1:001541348	0.0	C/1541348-1541627,1541912-1542114,1542192-1542323	AT1G05291.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32280.1); Has 35 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05291.1p  transcript_id AT1G05291.1  protein_id AT1G05291.1p  transcript_id AT1G05291.1  
At1g05300	chr1:001545258	0.0	C/1545258-1545563,1546188-1546337,1547083-1547709	AT1G05300.1 CDS  gene_syn YUP8H12.8, YUP8H12_8, ZINC TRANSPORTER 5 PRECURSOR, ZIP5  gene ZIP5  function member of Fe(II) transporter isolog family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_process response to zinc ion|GO:0010043|13129917|IEP  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product ZIP5; cation transmembrane transporter/ metal ion transmembrane transporter  note ZIP5; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP3; zinc ion transmembrane transporter (TAIR:AT2G32270.1); Has 1415 Blast hits to 1336 proteins in 213 species: Archae - 0; Bacteria - 110; Metazoa - 433; Fungi - 396; Plants - 310; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G05300.1p  transcript_id AT1G05300.1  protein_id AT1G05300.1p  transcript_id AT1G05300.1  
At1g05300	chr1:001546161	0.0	C/1546161-1546337,1547083-1547709	AT1G05300.2 CDS  gene_syn YUP8H12.8, YUP8H12_8, ZINC TRANSPORTER 5 PRECURSOR, ZIP5  gene ZIP5  function member of Fe(II) transporter isolog family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_process response to zinc ion|GO:0010043|13129917|IEP  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product ZIP5; cation transmembrane transporter/ metal ion transmembrane transporter  note ZIP5; FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP3; zinc ion transmembrane transporter (TAIR:AT2G32270.1); Has 823 Blast hits to 738 proteins in 133 species: Archae - 0; Bacteria - 11; Metazoa - 56; Fungi - 385; Plants - 275; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G05300.2p  transcript_id AT1G05300.2  protein_id AT1G05300.2p  transcript_id AT1G05300.2  
At1g05310	chr1:001550615	0.0	C/1550615-1550771,1550861-1551120,1551212-1551418,1551799-1551970,1552049-1552434	AT1G05310.1 CDS  gene_syn YUP8H12.7, YUP8H12_7  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT2G36710.1); Has 3380 Blast hits to 2212 proteins in 282 species: Archae - 5; Bacteria - 324; Metazoa - 1004; Fungi - 296; Plants - 988; Viruses - 6; Other Eukaryotes - 757 (source: NCBI BLink).  protein_id AT1G05310.1p  transcript_id AT1G05310.1  protein_id AT1G05310.1p  transcript_id AT1G05310.1  
At1g05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.1 CDS  gene_syn YUP8H12.6, YUP8H12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 205658 Blast hits to 89336 proteins in 2499 species: Archae - 2336; Bacteria - 33619; Metazoa - 92986; Fungi - 14305; Plants - 7441; Viruses - 1151; Other Eukaryotes - 53820 (source: NCBI BLink).  protein_id AT1G05320.1p  transcript_id AT1G05320.1  protein_id AT1G05320.1p  transcript_id AT1G05320.1  
At1g05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.2 CDS  gene_syn YUP8H12.6, YUP8H12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 205658 Blast hits to 89336 proteins in 2499 species: Archae - 2336; Bacteria - 33619; Metazoa - 92986; Fungi - 14305; Plants - 7441; Viruses - 1151; Other Eukaryotes - 53820 (source: NCBI BLink).  protein_id AT1G05320.2p  transcript_id AT1G05320.2  protein_id AT1G05320.2p  transcript_id AT1G05320.2  
At1g05320	chr1:001554856	0.0	W/1554856-1554900,1554991-1556586,1556658-1556867,1556945-1557079,1557176-1557328,1557425-1557658	AT1G05320.3 CDS  gene_syn YUP8H12.6, YUP8H12_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 205658 Blast hits to 89336 proteins in 2499 species: Archae - 2336; Bacteria - 33619; Metazoa - 92986; Fungi - 14305; Plants - 7441; Viruses - 1151; Other Eukaryotes - 53820 (source: NCBI BLink).  protein_id AT1G05320.3p  transcript_id AT1G05320.3  protein_id AT1G05320.3p  transcript_id AT1G05320.3  
At1g05330	chr1:001558170	0.0	W/1558170-1558583	AT1G05330.1 CDS  gene_syn YUP8H12.5, YUP8H12_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal; EXPRESSED DURING: petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05330.1p  transcript_id AT1G05330.1  protein_id AT1G05330.1p  transcript_id AT1G05330.1  
At1g05340	chr1:001559079	0.0	C/1559079-1559124,1559376-1559517,1559616-1559646	AT1G05340.1 CDS  gene_syn YUP8H12.4, YUP8H12_4  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 122 Blast hits to 122 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05340.1p  transcript_id AT1G05340.1  protein_id AT1G05340.1p  transcript_id AT1G05340.1  
At1g05350	chr1:001560891	0.0	C/1560891-1561039,1561143-1561195,1561313-1561431,1561537-1561623,1561744-1561818,1561953-1562027,1562080-1562121,1562205-1562287,1562369-1562405,1562578-1562733,1563012-1563080,1563165-1563293,1563390-1563503,1563582-1563650,1563925-1564005	AT1G05350.1 CDS  gene_syn YUP8H12.3, YUP8H12_3  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product thiF family protein  note thiF family protein; FUNCTIONS IN: binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme (TAIR:AT2G21470.2); Has 7901 Blast hits to 7756 proteins in 1322 species: Archae - 133; Bacteria - 4223; Metazoa - 801; Fungi - 447; Plants - 189; Viruses - 0; Other Eukaryotes - 2108 (source: NCBI BLink).  protein_id AT1G05350.1p  transcript_id AT1G05350.1  protein_id AT1G05350.1p  transcript_id AT1G05350.1  
At1g05360	chr1:001564816	0.0	W/1564816-1564861,1565152-1565363,1565622-1565700,1565818-1566105,1566342-1566490,1566612-1566728,1566826-1567005,1567099-1567278	AT1G05360.1 CDS  gene_syn YUP8H12.2, YUP8H12_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14950.1); Has 269 Blast hits to 262 proteins in 95 species: Archae - 0; Bacteria - 11; Metazoa - 157; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G05360.1p  transcript_id AT1G05360.1  protein_id AT1G05360.1p  transcript_id AT1G05360.1  
At1g05370	chr1:001569418	0.0	C/1569418-1570086,1570316-1570379,1570495-1570630,1570988-1571076,1571158-1571204,1571296-1571384,1571949-1572066,1572173-1572280	AT1G05370.1 CDS  gene_syn YUP8H12.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, hypocotyl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22410.1); Has 283 Blast hits to 283 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 127; Plants - 122; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G05370.1p  transcript_id AT1G05370.1  protein_id AT1G05370.1p  transcript_id AT1G05370.1  
At1g05380	chr1:001577231	0.0	W/1577231-1579195,1579314-1579440,1579534-1579619,1580030-1580268,1580625-1580711,1581184-1581283,1581378-1582190	AT1G05380.1 CDS  gene_syn T25N20.3, T25N20_3  go_component nucleus|GO:0005634|9836641|IC  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9836641|ISS  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: DNA binding / protein binding / zinc ion binding (TAIR:AT4G14920.1); Has 3573 Blast hits to 2987 proteins in 158 species: Archae - 3; Bacteria - 3; Metazoa - 2542; Fungi - 319; Plants - 377; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G05380.1p  transcript_id AT1G05380.1  protein_id AT1G05380.1p  transcript_id AT1G05380.1  
At1g05380	chr1:001577231	0.0	W/1577231-1579195,1579314-1579440,1579534-1579619,1580030-1580268,1580625-1580711,1581184-1581283,1581378-1582190	AT1G05380.2 CDS  gene_syn T25N20.3, T25N20_3  go_component nucleus|GO:0005634|9836641|IC  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9836641|ISS  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: DNA binding / protein binding / zinc ion binding (TAIR:AT4G14920.1); Has 3573 Blast hits to 2987 proteins in 158 species: Archae - 3; Bacteria - 3; Metazoa - 2542; Fungi - 319; Plants - 377; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G05380.2p  transcript_id AT1G05380.2  protein_id AT1G05380.2p  transcript_id AT1G05380.2  
At1g05385	chr1:001582747	0.0	C/1582747-1582884,1582965-1583347,1583570-1583648	AT1G05385.1 CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product photosystem II 11 kDa protein-related  note photosystem II 11 kDa protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 166 Blast hits to 166 proteins in 42 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G05385.1p  transcript_id AT1G05385.1  protein_id AT1G05385.1p  transcript_id AT1G05385.1  
At1g05390	chr1:001583772	0.0	C/1583772-1583845	AT1G05390.1 tRNA  gene_syn 51807.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT1G05390.1  
At1g05400	chr1:001584746	0.0	W/1584746-1585060,1585161-1585244	AT1G05400.1 CDS  gene_syn T25N20.5, T25N20_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 80 Blast hits to 76 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05400.1p  transcript_id AT1G05400.1  protein_id AT1G05400.1p  transcript_id AT1G05400.1  
At1g05400	chr1:001584746	0.0	W/1584746-1585060,1585161-1585244	AT1G05400.2 CDS  gene_syn T25N20.5, T25N20_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1).  protein_id AT1G05400.2p  transcript_id AT1G05400.2  protein_id AT1G05400.2p  transcript_id AT1G05400.2  
At1g05410	chr1:001585504	0.0	C/1585504-1585931,1586030-1586090,1586158-1586723,1586908-1587124,1587206-1587268	AT1G05410.2 CDS  gene_syn T25N20.6, T25N20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 112 Blast hits to 109 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 96; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G05410.2p  transcript_id AT1G05410.2  protein_id AT1G05410.2p  transcript_id AT1G05410.2  
At1g05410	chr1:001585504	0.0	C/1585504-1585931,1586030-1586090,1586158-1586723,1586908-1587268	AT1G05410.1 CDS  gene_syn T25N20.6, T25N20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22520.1); Has 112 Blast hits to 109 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 96; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G05410.1p  transcript_id AT1G05410.1  protein_id AT1G05410.1p  transcript_id AT1G05410.1  
At1g05420	chr1:001590073	0.0	W/1590073-1590753	AT1G05420.1 CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ATOFP12, OFP12, OVATE FAMILY PROTEIN 12, T25N20.7, T25N20_7  gene OFP12  go_process biological_process|GO:0008150||ND  product OFP12 (OVATE FAMILY PROTEIN 12)  note OVATE FAMILY PROTEIN 12 (OFP12); INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) (TAIR:AT2G32100.1); Has 175 Blast hits to 175 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05420.1p  transcript_id AT1G05420.1  protein_id AT1G05420.1p  transcript_id AT1G05420.1  
At1g05430	chr1:001594227	0.0	C/1594227-1594430,1594540-1594807,1594923-1595043,1595133-1595186,1595321-1595426,1595675-1595731	AT1G05430.1 CDS  gene_syn T25N20.8, T25N20_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05430.1p  transcript_id AT1G05430.1  protein_id AT1G05430.1p  transcript_id AT1G05430.1  
At1g05440	chr1:001596374	0.0	C/1596374-1596667,1596903-1597052,1597133-1597843	AT1G05440.1 CDS  gene_syn T25N20.9, T25N20_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 95 Blast hits to 95 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 4; Plants - 11; Viruses - 1; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G05440.1p  transcript_id AT1G05440.1  protein_id AT1G05440.1p  transcript_id AT1G05440.1  
At1g05450	chr1:001600004	0.0	W/1600004-1600334,1600507-1600533,1600642-1600701,1600809-1600862,1600941-1601086	AT1G05450.2 CDS  gene_syn T25N20.10, T25N20_10  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protease inhibitor/seed storage/lipid transfer protein (LTP)-related  note protease inhibitor/seed storage/lipid transfer protein (LTP)-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT3G22620.1); Has 727 Blast hits to 610 proteins in 90 species: Archae - 2; Bacteria - 62; Metazoa - 64; Fungi - 80; Plants - 373; Viruses - 24; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G05450.2p  transcript_id AT1G05450.2  protein_id AT1G05450.2p  transcript_id AT1G05450.2  
At1g05450	chr1:001600860	0.0	W/1600860-1600862,1600941-1601090	AT1G05450.1 CDS  gene_syn T25N20.10, T25N20_10  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protease inhibitor/seed storage/lipid transfer protein (LTP)-related  note protease inhibitor/seed storage/lipid transfer protein (LTP)-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05450.1p  transcript_id AT1G05450.1  protein_id AT1G05450.1p  transcript_id AT1G05450.1  
At1g05460	chr1:001601357	0.0	C/1601357-1601962,1602053-1603507,1603623-1603787,1603876-1604658	AT1G05460.1 CDS  gene_syn SDE3, SILENCING DEFECTIVE, T25N20.11, T25N20_11  gene SDE3  function Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.  go_component cellular_component|GO:0005575||ND  go_process virus induced gene silencing|GO:0009616|11296239|IMP  go_function RNA helicase activity|GO:0003724|11296239|ISS  product SDE3 (SILENCING DEFECTIVE); RNA helicase  note SILENCING DEFECTIVE (SDE3); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: virus induced gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: LBA1 (LOW-LEVEL BETA-AMYLASE 1); ATP binding / DNA binding / RNA helicase/ hydrolase (TAIR:AT5G47010.1); Has 6714 Blast hits to 5072 proteins in 715 species: Archae - 148; Bacteria - 1269; Metazoa - 1798; Fungi - 1052; Plants - 324; Viruses - 178; Other Eukaryotes - 1945 (source: NCBI BLink).  protein_id AT1G05460.1p  transcript_id AT1G05460.1  protein_id AT1G05460.1p  transcript_id AT1G05460.1  
At1g05470	chr1:001608558	0.0	C/1608558-1608780,1608868-1609016,1609099-1609207,1609316-1609509,1609602-1610397,1610486-1610590,1610674-1610761,1610854-1610925,1611074-1611161,1611262-1611291	AT1G05470.1 CDS  gene_syn COTYLEDON VASCULAR PATTERN 2, CVP2, T25N20.12, T25N20_12  gene CVP2  function Encodes an inositol polyphosphate 5  phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.  go_component cellular_component|GO:0005575||ND  go_process auxin metabolic process|GO:0009850|10559439|IMP  go_process xylem and phloem pattern formation|GO:0010051|10559439|IMP  go_process response to abscisic acid stimulus|GO:0009737|15100402|IMP  go_process procambium histogenesis|GO:0010067|15100402|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|15100402|IMP  go_process cotyledon vascular tissue pattern formation|GO:0010588|15100402|IMP  go_process inositol trisphosphate metabolic process|GO:0032957|15100402|IMP  go_process inositol phosphate dephosphorylation|GO:0046855|15100402|IMP  go_process inositol phosphate-mediated signaling|GO:0048016|15100402|IC  go_function hydrolase activity|GO:0016787||ISS  go_function inositol trisphosphate phosphatase activity|GO:0046030|15100402|IMP  product CVP2 (COTYLEDON VASCULAR PATTERN 2); hydrolase/ inositol trisphosphate phosphatase  note COTYLEDON VASCULAR PATTERN 2 (CVP2); FUNCTIONS IN: hydrolase activity, inositol trisphosphate phosphatase activity; INVOLVED IN: in 9 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G32010.1); Has 2340 Blast hits to 1521 proteins in 172 species: Archae - 0; Bacteria - 29; Metazoa - 766; Fungi - 447; Plants - 343; Viruses - 1; Other Eukaryotes - 754 (source: NCBI BLink).  protein_id AT1G05470.1p  transcript_id AT1G05470.1  protein_id AT1G05470.1p  transcript_id AT1G05470.1  
At1g05490	chr1:001618795	0.0	C/1618795-1620729,1620817-1620966,1621048-1623195	AT1G05490.1 CDS  gene_syn T25N20.14, chr31, chromatin remodeling 31  gene chr31  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product chr31 (chromatin remodeling 31); ATP binding / DNA binding / helicase/ nucleic acid binding  note chromatin remodeling 31 (chr31); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chr40 (chromatin remodeling 40); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G24340.1); Has 31678 Blast hits to 20340 proteins in 1252 species: Archae - 143; Bacteria - 7169; Metazoa - 10771; Fungi - 4378; Plants - 1087; Viruses - 234; Other Eukaryotes - 7896 (source: NCBI BLink).  protein_id AT1G05490.1p  transcript_id AT1G05490.1  protein_id AT1G05490.1p  transcript_id AT1G05490.1  
At1g05500	chr1:001625098	0.0	W/1625098-1625202,1625285-1625389,1625527-1625577,1625698-1625818,1626231-1626352,1626510-1626611,1626842-1626916,1627329-1627408,1627604-1627754,1627828-1628058,1628160-1628438,1628529-1628642,1628794-1628940	AT1G05500.1 CDS  gene_syn ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, ATSYTE, NTMC2T2.1, NTMC2TYPE2.1, SYNAPTOTAGMIN HOMOLOG E, SYTE, T25N20.15  gene NTMC2T2.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NTMC2T2.1  note NTMC2T2.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: SYTD (TAIR:AT5G11100.1); Has 9319 Blast hits to 5090 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 6456; Fungi - 877; Plants - 1262; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).  protein_id AT1G05500.1p  transcript_id AT1G05500.1  protein_id AT1G05500.1p  transcript_id AT1G05500.1  
At1g05510	chr1:001629527	0.0	W/1629527-1629672,1630016-1630419,1630515-1630690	AT1G05510.1 CDS  gene_syn T25N20.16  function Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|18768909|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31985.1); Has 189 Blast hits to 189 proteins in 83 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 43; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05510.1p  transcript_id AT1G05510.1  protein_id AT1G05510.1p  transcript_id AT1G05510.1  
At1g05520	chr1:001631126	0.0	C/1631126-1631272,1631390-1631494,1631579-1631842,1631916-1632077,1632344-1632421,1632972-1633053,1633132-1633304,1633400-1633475,1633619-1633761,1633934-1634095,1634604-1634777,1634918-1635703	AT1G05520.1 CDS  gene_syn T25N20.17  go_component COPII vesicle coat|GO:0030127||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process transport|GO:0006810||ISS  go_process response to salt stress|GO:0009651|11351099|IEP  go_function transporter activity|GO:0005215||ISS  product transport protein, putative  note transport protein, putative; FUNCTIONS IN: protein binding, transporter activity, zinc ion binding; INVOLVED IN: transport, response to salt stress; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24 helical region (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24 trunk region (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin region (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: transport protein, putative (TAIR:AT3G23660.1); Has 994 Blast hits to 985 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 420; Fungi - 283; Plants - 133; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT1G05520.1p  transcript_id AT1G05520.1  protein_id AT1G05520.1p  transcript_id AT1G05520.1  
At1g05530	chr1:001636496	0.0	C/1636496-1637863	AT1G05530.1 CDS  gene_syn T25N20.18, UDP-GLUCOSYL TRANSFERASE 2, UDP-GLUCOSYL TRANSFERASE 75B2, UGT2, UGT75B2  gene UGT75B2  function Encodes a protein with glucosyltransferase activity with high sequence homology to UGT1 (AT1G05560). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT2 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose.  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|11283335|ISS  product UGT75B2 (UDP-GLUCOSYL TRANSFERASE 75B2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 75B2 (UGT75B2); FUNCTIONS IN: UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1); UDP-glucose:4-aminobenzoate acylglucosyltransferase/ UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G05560.1); Has 4347 Blast hits to 4324 proteins in 322 species: Archae - 0; Bacteria - 140; Metazoa - 1377; Fungi - 14; Plants - 2682; Viruses - 106; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G05530.1p  transcript_id AT1G05530.1  protein_id AT1G05530.1p  transcript_id AT1G05530.1  
At1g05540	chr1:001639348	0.0	W/1639348-1639401,1639587-1640314,1640386-1640707	AT1G05540.1 CDS  gene_syn T25N20.19  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30160.2); Has 120 Blast hits to 118 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05540.1p  transcript_id AT1G05540.1  protein_id AT1G05540.1p  transcript_id AT1G05540.1  
At1g05550	chr1:001641717	0.0	C/1641717-1642373,1642582-1642593	AT1G05550.2 CDS  gene_syn T25N20.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05540.1).  protein_id AT1G05550.2p  transcript_id AT1G05550.2  protein_id AT1G05550.2p  transcript_id AT1G05550.2  
At1g05550	chr1:001641717	0.0	C/1641717-1642373,1642586-1642639	AT1G05550.1 CDS  gene_syn T25N20.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05540.1); Has 168 Blast hits to 116 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05550.1p  transcript_id AT1G05550.1  protein_id AT1G05550.1p  transcript_id AT1G05550.1  
At1g05560	chr1:001645674	0.0	C/1645674-1647083	AT1G05560.1 CDS  gene_syn T25N20.21, UDP-GLUCOSE TRANSFERASE 1, UDP-GLUCOSYLTRANSFERASE, UDP-GLUCOSYLTRANSFERASE 75B1, UGT1, UGT75B1  gene UGT75B1  function A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques.  go_component phragmoplast|GO:0009524|11283335|IDA  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_process cell plate formation involved in plant-type cell wall biogenesis|GO:0009920|11283335|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process para-aminobenzoic acid metabolic process|GO:0046482|18385129|IDA  go_function UDP-glycosyltransferase activity|GO:0008194|11283335|ISS  go_function UDP-glycosyltransferase activity|GO:0008194|11283335|TAS  go_function abscisic acid glucosyltransferase activity|GO:0010294||IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|16307367|TAS  go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA  go_function UDP-glucose:4-aminobenzoate acylglucosyltransferase activity|GO:0080002|18385129|IDA  product UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1); UDP-glucose:4-aminobenzoate acylglucosyltransferase/ UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYLTRANSFERASE 75B1 (UGT75B1); FUNCTIONS IN: UDP-glucose:4-aminobenzoate acylglucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cyclopentenone, para-aminobenzoic acid metabolic process, cell plate formation involved in plant-type cell wall biogenesis, response to salicylic acid stimulus; LOCATED IN: phragmoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT75B2 (UDP-GLUCOSYL TRANSFERASE 75B2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G05530.1); Has 4874 Blast hits to 4844 proteins in 343 species: Archae - 0; Bacteria - 192; Metazoa - 1832; Fungi - 18; Plants - 2693; Viruses - 107; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G05560.1p  transcript_id AT1G05560.1  protein_id AT1G05560.1p  transcript_id AT1G05560.1  
At1g05570	chr1:001647880	0.0	C/1647880-1648128,1648227-1648412,1648499-1648549,1648626-1649426,1649531-1649760,1649850-1649962,1650044-1650127,1650216-1650334,1650457-1650576,1650728-1650887,1650982-1651171,1651256-1651324,1651437-1651562,1651648-1651757,1651833-1651984,1652114-1652243,1652327-1652424,1652514-1652637,1652719-1652879,1652967-1653051,1653823-1653917,1654019-1654156,1654282-1654368,1654451-1654500,1654588-1654669,1654832-1654892,1654976-1655028,1655120-1655457,1655631-1655748,1655830-1655949,1656201-1656294,1656391-1656467,1656555-1656692,1656795-1656921,1657067-1657158,1657263-1657355,1657440-1657556,1657641-1657751,1657888-1657981,1658084-1658205,1658299-1658399,1658491-1658677	AT1G05570.1 CDS  gene_syn ATGSL06, ATGSL6, CALLOSE SYNTHASE 1, CALS1, F3F20.1, F3F20_1, GLUCAN SYNTHASE-LIKE 6, GSL06, GSL6  gene CALS1  function Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component 1,3-beta-glucan synthase complex|GO:0000148|11283334|ISS  go_component cell plate|GO:0009504|11283334|IDA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075|11283334|ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product CALS1 (CALLOSE SYNTHASE 1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note CALLOSE SYNTHASE 1 (CALS1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane, cell plate; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: ATGSL03 (GLUCAN SYNTHASE-LIKE 3); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT2G31960.1); Has 915 Blast hits to 682 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 537; Plants - 284; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G05570.1p  transcript_id AT1G05570.1  protein_id AT1G05570.1p  transcript_id AT1G05570.1  
At1g05575	chr1:001661829	0.0	C/1661829-1662098	AT1G05575.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05575.1p  transcript_id AT1G05575.1  protein_id AT1G05575.1p  transcript_id AT1G05575.1  
At1g05577	chr1:001662643	0.0	C/1662643-1662838,1662914-1663018,1663236-1663734,1663807-1663922,1664000-1664069,1664156-1664288	AT1G05577.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59790.1); Has 88 Blast hits to 87 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05577.1p  transcript_id AT1G05577.1  protein_id AT1G05577.1p  transcript_id AT1G05577.1  
At1g05580	chr1:001665594	0.0	C/1665594-1666943,1667237-1667778,1667999-1668377	AT1G05580.2 CDS  gene_syn ATCHX23, CATION/H+ EXCHANGER 23, CHX23, F3F20.2, F3F20_2  gene ATCHX23  function member of Putative Na+/H+ antiporter family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX23 (CATION/H+ EXCHANGER 23); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 23 (ATCHX23); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX21 (CATION/H+ EXCHANGER 21); sodium:hydrogen antiporter (TAIR:AT2G31910.1); Has 3151 Blast hits to 3135 proteins in 871 species: Archae - 145; Bacteria - 2302; Metazoa - 0; Fungi - 94; Plants - 254; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).  protein_id AT1G05580.2p  transcript_id AT1G05580.2  protein_id AT1G05580.2p  transcript_id AT1G05580.2  
At1g05580	chr1:001665594	0.0	C/1665594-1666943,1667237-1667778,1667999-1668455,1668540-1668794	AT1G05580.1 CDS  gene_syn ATCHX23, CATION/H+ EXCHANGER 23, CHX23, F3F20.2, F3F20_2  gene ATCHX23  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX23 (CATION/H+ EXCHANGER 23); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 23 (ATCHX23); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX21 (CATION/H+ EXCHANGER 21); sodium:hydrogen antiporter (TAIR:AT2G31910.1); Has 3607 Blast hits to 3589 proteins in 924 species: Archae - 175; Bacteria - 2696; Metazoa - 0; Fungi - 96; Plants - 257; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink).  protein_id AT1G05580.1p  transcript_id AT1G05580.1  protein_id AT1G05580.1p  transcript_id AT1G05580.1  
At1g05590	chr1:001669871	0.0	W/1669871-1670660,1670734-1671686	AT1G05590.1 CDS  gene_syn ATHEX3, BETA-HEXOSAMINIDASE 2, BETA-HEXOSAMINIDASE 3, F3F20.4, F3F20_4, HEXO2  gene HEXO2  function Encodes a protein with & 946;-hexosaminidase activity (the enzyme is active with p-nitrophenyl-& 946;-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-& 946;-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component plasma membrane|GO:0005886|17644627|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function beta-N-acetylhexosaminidase activity|GO:0004563|17644627|IDA  go_function hexosaminidase activity|GO:0015929|17636254|IDA  product HEXO2 (BETA-HEXOSAMINIDASE 2); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds  note BETA-HEXOSAMINIDASE 2 (HEXO2); FUNCTIONS IN: hexosaminidase activity, beta-N-acetylhexosaminidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase-like (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: HEXO1 (BETA-HEXOSAMINIDASE 1); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT3G55260.1); Has 2277 Blast hits to 2231 proteins in 429 species: Archae - 0; Bacteria - 1137; Metazoa - 404; Fungi - 138; Plants - 60; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink).  protein_id AT1G05590.1p  transcript_id AT1G05590.1  protein_id AT1G05590.1p  transcript_id AT1G05590.1  
At1g05600	chr1:001672161	0.0	W/1672161-1673675	AT1G05600.1 CDS  gene_syn F3F20.5, F3F20_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G46100.1); Has 9761 Blast hits to 3325 proteins in 121 species: Archae - 0; Bacteria - 2; Metazoa - 101; Fungi - 82; Plants - 9383; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT1G05600.1p  transcript_id AT1G05600.1  protein_id AT1G05600.1p  transcript_id AT1G05600.1  
At1g05610	chr1:001673895	0.0	C/1673895-1674011,1674104-1674229,1674324-1674422,1674517-1674634,1674732-1674817,1674890-1675063,1675132-1675392,1675485-1675934	AT1G05610.1 CDS  gene_syn ADP-GLUCOSE PYROPHOSPHORYLASE, ADP-glucose pyrophoshorylase small subunit 2, APS2, F3F20.6, F3F20_6  gene APS2  function Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity|GO:0016740||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878||ISS  product APS2 (ADP-glucose pyrophoshorylase small subunit 2); glucose-1-phosphate adenylyltransferase/ nucleotidyltransferase/ transferase  note ADP-glucose pyrophoshorylase small subunit 2 (APS2); FUNCTIONS IN: transferase activity, glucose-1-phosphate adenylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1); glucose-1-phosphate adenylyltransferase (TAIR:AT5G48300.1); Has 4420 Blast hits to 4420 proteins in 925 species: Archae - 156; Bacteria - 2476; Metazoa - 15; Fungi - 9; Plants - 1213; Viruses - 0; Other Eukaryotes - 551 (source: NCBI BLink).  protein_id AT1G05610.1p  transcript_id AT1G05610.1  protein_id AT1G05610.1p  transcript_id AT1G05610.1  
At1g05615	chr1:001677507	0.0	C/1677507-1677806,1677901-1677964,1678116-1678270	AT1G05615.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24670.1); Has 37 Blast hits to 37 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05615.1p  transcript_id AT1G05615.1  protein_id AT1G05615.1p  transcript_id AT1G05615.1  
At1g05620	chr1:001679286	0.0	W/1679286-1679337,1679601-1679716,1679824-1679883,1680121-1680306,1680401-1680505,1680623-1680719,1680914-1681021,1681162-1681297,1681419-1681527	AT1G05620.1 CDS  gene_syn F3F20.7, F3F20_7, URH2, URIDINE-RIBOHYDROLASE 2  gene URH2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product URH2 (URIDINE-RIBOHYDROLASE 2); hydrolase  note URIDINE-RIBOHYDROLASE 2 (URH2); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: URH1 (URIDINE-RIBOHYDROLASE 1); adenosine nucleosidase/ hydrolase/ inosine nucleosidase/ uridine nucleosidase (TAIR:AT2G36310.1); Has 3510 Blast hits to 3474 proteins in 706 species: Archae - 26; Bacteria - 2065; Metazoa - 165; Fungi - 155; Plants - 94; Viruses - 0; Other Eukaryotes - 1005 (source: NCBI BLink).  protein_id AT1G05620.1p  transcript_id AT1G05620.1  protein_id AT1G05620.1p  transcript_id AT1G05620.1  
At1g05620	chr1:001679609	0.0	W/1679609-1679716,1679824-1679883,1680121-1680306,1680401-1680505,1680623-1680719,1680914-1681021,1681162-1681297,1681419-1681527	AT1G05620.2 CDS  gene_syn F3F20.7, F3F20_7, URH2, URIDINE-RIBOHYDROLASE 2  gene URH2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product URH2 (URIDINE-RIBOHYDROLASE 2); hydrolase  note URIDINE-RIBOHYDROLASE 2 (URH2); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: URH1 (URIDINE-RIBOHYDROLASE 1); adenosine nucleosidase/ hydrolase/ inosine nucleosidase/ uridine nucleosidase (TAIR:AT2G36310.1); Has 3384 Blast hits to 3371 proteins in 699 species: Archae - 26; Bacteria - 2026; Metazoa - 165; Fungi - 149; Plants - 85; Viruses - 0; Other Eukaryotes - 933 (source: NCBI BLink).  protein_id AT1G05620.2p  transcript_id AT1G05620.2  protein_id AT1G05620.2p  transcript_id AT1G05620.2  
At1g05630	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685484,1685587-1685627,1685714-1685981,1686127-1686250,1686348-1686708,1686791-1687153	AT1G05630.2 CDS  gene_syn 5PTASE13, AT5PTASE13, F3F20.8, F3F20_8  gene 5PTASE13  function Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light stimulated increase in cytosolic calcium ion.  go_component nucleus|GO:0005634|18931139|IDA  go_process response to nutrient|GO:0007584|18931139|IMP  go_process response to wounding|GO:0009611|15574849|IEP  go_process response to blue light|GO:0009637|18252844|IEP  go_process response to blue light|GO:0009637|18252844|IMP  go_process response to abscisic acid stimulus|GO:0009737|15574849|IEP  go_process response to abscisic acid stimulus|GO:0009737|18931139|IMP  go_process response to carbohydrate stimulus|GO:0009743|18931139|IMP  go_process phloem or xylem histogenesis|GO:0010087|16299182|IMP  go_process sugar mediated signaling|GO:0010182|18931139|IMP  go_process auxin homeostasis|GO:0010252|16299182|IMP  go_process root development|GO:0048364|18931139|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|15574849|IDA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|18931139|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  product 5PTASE13; inositol or phosphatidylinositol phosphatase  note 5PTASE13; FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1); Has 1454 Blast hits to 1427 proteins in 165 species: Archae - 0; Bacteria - 15; Metazoa - 627; Fungi - 341; Plants - 258; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).  protein_id AT1G05630.2p  transcript_id AT1G05630.2  protein_id AT1G05630.2p  transcript_id AT1G05630.2  
At1g05630	chr1:001682483	0.0	W/1682483-1683299,1683389-1683641,1683734-1684541,1684645-1684769,1684903-1684987,1685319-1685627,1685714-1685981,1686127-1686250,1686348-1686708,1686791-1687153	AT1G05630.1 CDS  gene_syn 5PTASE13, AT5PTASE13, F3F20.8, F3F20_8  gene 5PTASE13  function Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light stimulated increase in cytosolic calcium ion.  go_component nucleus|GO:0005634|18931139|IDA  go_process response to nutrient|GO:0007584|18931139|IMP  go_process response to wounding|GO:0009611|15574849|IEP  go_process response to blue light|GO:0009637|18252844|IEP  go_process response to blue light|GO:0009637|18252844|IMP  go_process response to abscisic acid stimulus|GO:0009737|15574849|IEP  go_process response to abscisic acid stimulus|GO:0009737|18931139|IMP  go_process response to carbohydrate stimulus|GO:0009743|18931139|IMP  go_process phloem or xylem histogenesis|GO:0010087|16299182|IMP  go_process sugar mediated signaling|GO:0010182|18931139|IMP  go_process auxin homeostasis|GO:0010252|16299182|IMP  go_process root development|GO:0048364|18931139|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|15574849|IDA  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437|18931139|IMP  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  product 5PTASE13; inositol or phosphatidylinositol phosphatase  note 5PTASE13; FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: in 9 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G31830.1); Has 1919 Blast hits to 1408 proteins in 163 species: Archae - 0; Bacteria - 15; Metazoa - 860; Fungi - 444; Plants - 345; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G05630.1p  transcript_id AT1G05630.1  protein_id AT1G05630.1p  transcript_id AT1G05630.1  
At1g05640	chr1:001687436	0.0	C/1687436-1688305,1688389-1688798,1688898-1689501	AT1G05640.1 CDS  gene_syn F3F20.9, F3F20_9  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT2G31820.1); Has 53987 Blast hits to 21643 proteins in 757 species: Archae - 45; Bacteria - 3706; Metazoa - 28168; Fungi - 4503; Plants - 2747; Viruses - 485; Other Eukaryotes - 14333 (source: NCBI BLink).  protein_id AT1G05640.1p  transcript_id AT1G05640.1  protein_id AT1G05640.1p  transcript_id AT1G05640.1  
At1g05650	chr1:001690264	0.0	C/1690264-1690491,1690602-1690830,1690979-1691268,1691689-1692126	AT1G05650.1 CDS  gene_syn F3F20.10, F3F20_10  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G05660.1); Has 2385 Blast hits to 2377 proteins in 298 species: Archae - 2; Bacteria - 431; Metazoa - 8; Fungi - 997; Plants - 877; Viruses - 2; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G05650.1p  transcript_id AT1G05650.1  protein_id AT1G05650.1p  transcript_id AT1G05650.1  
At1g05660	chr1:001694286	0.0	C/1694286-1694513,1694620-1694848,1694996-1695285,1695621-1696058	AT1G05660.1 CDS  gene_syn F3F20.11, F3F20_11  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase, putative / pectinase, putative  note polygalacturonase, putative / pectinase, putative; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G05650.1); Has 2393 Blast hits to 2384 proteins in 303 species: Archae - 2; Bacteria - 431; Metazoa - 8; Fungi - 992; Plants - 890; Viruses - 2; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G05660.1p  transcript_id AT1G05660.1  protein_id AT1G05660.1p  transcript_id AT1G05660.1  
At1g05670	chr1:001698574	0.0	C/1698574-1700715,1700990-1701153,1701326-1701929,1702071-1702715	AT1G05670.1 CDS  gene_syn F3F20.12, F3F20_12  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05680.1); Has 33439 Blast hits to 11406 proteins in 464 species: Archae - 3; Bacteria - 229; Metazoa - 3199; Fungi - 827; Plants - 27610; Viruses - 120; Other Eukaryotes - 1451 (source: NCBI BLink).  protein_id AT1G05670.1p  transcript_id AT1G05670.1  protein_id AT1G05670.1p  transcript_id AT1G05670.1  
At1g05670	chr1:001698574	0.0	C/1698574-1700715,1700990-1701153,1701326-1701929,1702071-1702715	AT1G05670.2 CDS  gene_syn F3F20.12, F3F20_12  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05680.1).  protein_id AT1G05670.2p  transcript_id AT1G05670.2  protein_id AT1G05670.2p  transcript_id AT1G05670.2  
At1g05680	chr1:001703196	0.0	C/1703196-1703912,1703995-1704639	AT1G05680.1 CDS  gene_syn F3F20.13, F3F20_13  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function UDP-glucosyltransferase activity|GO:0035251|18702669|IDA  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05670.2); Has 5259 Blast hits to 5222 proteins in 351 species: Archae - 0; Bacteria - 208; Metazoa - 2177; Fungi - 15; Plants - 2710; Viruses - 116; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G05680.1p  transcript_id AT1G05680.1  protein_id AT1G05680.1p  transcript_id AT1G05680.1  
At1g05690	chr1:001707809	0.0	W/1707809-1708027,1708105-1708235,1708312-1708926,1709003-1709132	AT1G05690.1 CDS  gene_syn BT3, BTB AND TAZ DOMAIN PROTEIN 3, F3F20.14, F3F20_14  gene BT3  function BTB and TAZ domain protein. Acts redunantly with BT1 and BT2 during female gametophyte development. Acts with BT2 during male gametophyte development.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process embryo sac development|GO:0009553|19054356|IGI  go_process pollen development|GO:0009555|19054356|IGI  go_function protein binding|GO:0005515||ISS  go_function transcription regulator activity|GO:0030528|10748221|TAS  product BT3 (BTB AND TAZ DOMAIN PROTEIN 3); protein binding / transcription regulator  note BTB AND TAZ DOMAIN PROTEIN 3 (BT3); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: embryo sac development, pollen development; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BT4 (BTB AND TAZ DOMAIN PROTEIN 4); protein binding / transcription regulator (TAIR:AT5G67480.2); Has 1425 Blast hits to 1422 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 934; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G05690.1p  transcript_id AT1G05690.1  protein_id AT1G05690.1p  transcript_id AT1G05690.1  
At1g05700	chr1:001709796	0.0	W/1709796-1709883,1709983-1710520,1710647-1711122,1711202-1711340,1711429-1711500,1711596-1711667,1711739-1711972,1712093-1712285,1712362-1712551,1712638-1712827,1712906-1713245	AT1G05700.1 CDS  gene_syn F3F20.15, F3F20_15  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: light repressible receptor protein kinase (TAIR:AT4G29990.1); Has 110949 Blast hits to 88510 proteins in 3306 species: Archae - 58; Bacteria - 8079; Metazoa - 38064; Fungi - 6544; Plants - 42070; Viruses - 471; Other Eukaryotes - 15663 (source: NCBI BLink).  protein_id AT1G05700.1p  transcript_id AT1G05700.1  protein_id AT1G05700.1p  transcript_id AT1G05700.1  
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.1 CDS  gene_syn F3F20.16, F3F20_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process response to ethylene stimulus|GO:0009723||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT2G31730.1); Has 547 Blast hits to 547 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 547; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05710.1p  transcript_id AT1G05710.1  protein_id AT1G05710.1p  transcript_id AT1G05710.1  
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.3 CDS  gene_syn F3F20.16, F3F20_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process response to ethylene stimulus|GO:0009723||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT2G31730.1); Has 547 Blast hits to 547 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 547; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05710.3p  transcript_id AT1G05710.3  protein_id AT1G05710.3p  transcript_id AT1G05710.3  
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716624,1716691-1716735,1716862-1717023	AT1G05710.4 CDS  gene_syn F3F20.16, F3F20_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process response to ethylene stimulus|GO:0009723||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT2G31730.1); Has 547 Blast hits to 547 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 547; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05710.4p  transcript_id AT1G05710.4  protein_id AT1G05710.4p  transcript_id AT1G05710.4  
At1g05710	chr1:001716198	0.0	W/1716198-1716308,1716419-1716484,1716559-1716735,1716862-1717023	AT1G05710.2 CDS  gene_syn F3F20.16, F3F20_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process response to ethylene stimulus|GO:0009723||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ethylene-responsive protein, putative (TAIR:AT2G31730.1); Has 463 Blast hits to 463 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 463; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05710.2p  transcript_id AT1G05710.2  protein_id AT1G05710.2p  transcript_id AT1G05710.2  
At1g05720	chr1:001717677	0.0	C/1717677-1717749,1718120-1718301,1718430-1718488,1718672-1718849	AT1G05720.1 CDS  gene_syn F3F20.17, F3F20_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function selenium binding|GO:0008430||ISS  product selenoprotein family protein  note selenoprotein family protein; FUNCTIONS IN: selenium binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sep15/SelM redox (InterPro:IPR014912); Has 143 Blast hits to 143 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G05720.1p  transcript_id AT1G05720.1  protein_id AT1G05720.1p  transcript_id AT1G05720.1  
At1g05730	chr1:001719107	0.0	W/1719107-1719235,1719760-1719897,1719977-1720159	AT1G05730.1 CDS  gene_syn F3F20.18, F3F20_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31725.1); Has 186 Blast hits to 186 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G05730.1p  transcript_id AT1G05730.1  protein_id AT1G05730.1p  transcript_id AT1G05730.1  
At1g05740	chr1:001720674	0.0	W/1720674-1720802,1720923-1721093,1721172-1721309	AT1G05740.1 CDS  gene_syn F3F20.19, F3F20_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05730.1); Has 107 Blast hits to 107 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G05740.1p  transcript_id AT1G05740.1  protein_id AT1G05740.1p  transcript_id AT1G05740.1  
At1g05750	chr1:001721523	0.0	W/1721523-1723025	AT1G05750.1 CDS  gene_syn PDE247, T20M3.1, T20M3_1, pigment defective 247  gene PDE247  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product PDE247 (pigment defective 247)  note pigment defective 247 (PDE247); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G20540.1); Has 15650 Blast hits to 5061 proteins in 155 species: Archae - 1; Bacteria - 6; Metazoa - 72; Fungi - 40; Plants - 15230; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).  protein_id AT1G05750.1p  transcript_id AT1G05750.1  protein_id AT1G05750.1p  transcript_id AT1G05750.1  
At1g05760	chr1:001723797	0.0	C/1723797-1724114,1724234-1724440	AT1G05760.1 CDS  gene_syn RTM1, T20M3.2, T20M3_2, restricted tev movement 1  gene RTM1  function Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance  go_component cellular_component|GO:0005575||ND  go_process response to virus|GO:0009615|9628015|IMP  go_function sugar binding|GO:0005529|10618445|ISS  product RTM1 (restricted tev movement 1); sugar binding  note restricted tev movement 1 (RTM1); FUNCTIONS IN: sugar binding; INVOLVED IN: response to virus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G05770.1); Has 561 Blast hits to 348 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G05760.1p  transcript_id AT1G05760.1  protein_id AT1G05760.1p  transcript_id AT1G05760.1  
At1g05770	chr1:001725547	0.0	C/1725547-1725882,1726032-1726250	AT1G05770.1 CDS  gene_syn T20M3.3, T20M3_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: RTM1 (restricted tev movement 1); sugar binding (TAIR:AT1G05760.1); Has 308 Blast hits to 229 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05770.1p  transcript_id AT1G05770.1  protein_id AT1G05770.1p  transcript_id AT1G05770.1  
At1g05780	chr1:001726761	0.0	W/1726761-1726857,1727957-1728180	AT1G05780.1 CDS  gene_syn T20M3.4, T20M3_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31710.1); Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05780.1p  transcript_id AT1G05780.1  protein_id AT1G05780.1p  transcript_id AT1G05780.1  
At1g05785	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.1 CDS  go_process vesicle-mediated transport|GO:0016192||IEA  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192||ISS  go_function molecular_function|GO:0003674||ND  product Got1-like family protein  note Got1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Got1-like protein (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1-like family protein (TAIR:AT5G01430.1); Has 318 Blast hits to 318 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 75; Plants - 52; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G05785.1p  transcript_id AT1G05785.1  protein_id AT1G05785.1p  transcript_id AT1G05785.1  
At1g05785	chr1:001730981	0.0	W/1730981-1731008,1731294-1731385,1731467-1731547,1731631-1731728,1732014-1732089,1732374-1732406	AT1G05785.2 CDS  go_process vesicle-mediated transport|GO:0016192||IEA  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192||ISS  go_function molecular_function|GO:0003674||ND  product Got1-like family protein  note Got1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Got1-like protein (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1-like family protein (TAIR:AT5G01430.1); Has 318 Blast hits to 318 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 75; Plants - 52; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G05785.2p  transcript_id AT1G05785.2  protein_id AT1G05785.2p  transcript_id AT1G05785.2  
At1g05790	chr1:001733039	0.0	W/1733039-1733299,1733478-1733616,1733778-1733892,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736355-1736452,1736532-1736731,1736835-1737201,1737287-1737365	AT1G05790.1 CDS  gene_syn T20M3.5, T20M3_5  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G42450.1); Has 341 Blast hits to 338 proteins in 81 species: Archae - 0; Bacteria - 1; Metazoa - 150; Fungi - 32; Plants - 108; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G05790.1p  transcript_id AT1G05790.1  protein_id AT1G05790.1p  transcript_id AT1G05790.1  
At1g05790	chr1:001733996	0.0	W/1733996-1733997,1734114-1734214,1734671-1734792,1734866-1734957,1735112-1735217,1735496-1735650,1735938-1736044,1736152-1736273,1736355-1736452,1736532-1736731,1736835-1737201,1737287-1737365	AT1G05790.2 CDS  gene_syn T20M3.5, T20M3_5  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G42450.1); Has 341 Blast hits to 338 proteins in 81 species: Archae - 0; Bacteria - 1; Metazoa - 150; Fungi - 32; Plants - 108; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G05790.2p  transcript_id AT1G05790.2  protein_id AT1G05790.2p  transcript_id AT1G05790.2  
At1g05800	chr1:001741204	0.0	W/1741204-1742619	AT1G05800.1 CDS  gene_syn DGL, DONGLE, T20M3.6  gene DGL  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product DGL (DONGLE); triacylglycerol lipase  note DONGLE (DGL); FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G31690.1); Has 707 Blast hits to 702 proteins in 150 species: Archae - 0; Bacteria - 106; Metazoa - 20; Fungi - 175; Plants - 281; Viruses - 3; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G05800.1p  transcript_id AT1G05800.1  protein_id AT1G05800.1p  transcript_id AT1G05800.1  
At1g05805	chr1:001744843	0.0	W/1744843-1745317,1746210-1746502,1746761-1746889,1747036-1747101,1747193-1747261,1747371-1747427	AT1G05805.1 CDS  go_component cytosol|GO:0005829|18433157|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G43140.1); Has 2445 Blast hits to 1444 proteins in 113 species: Archae - 2; Bacteria - 55; Metazoa - 778; Fungi - 140; Plants - 840; Viruses - 0; Other Eukaryotes - 630 (source: NCBI BLink).  protein_id AT1G05805.1p  transcript_id AT1G05805.1  protein_id AT1G05805.1p  transcript_id AT1G05805.1  
At1g05810	chr1:001748314	0.0	W/1748314-1748776,1749028-1749350	AT1G05810.1 CDS  gene_syn ARA, ARA-1, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, ATRAB11D, ATRABA5E, RAB GTPASE HOMOLOG A5E, RABA5E, T20M3.8, T20M3_8  gene RABA5E  go_component chloroplast|GO:0009507||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product RABA5E (RAB GTPASE HOMOLOG A5E); GTP binding  note RAB GTPASE HOMOLOG A5E (RABA5E); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding (TAIR:AT2G31680.1); Has 22163 Blast hits to 22131 proteins in 622 species: Archae - 17; Bacteria - 101; Metazoa - 12424; Fungi - 2555; Plants - 2039; Viruses - 19; Other Eukaryotes - 5008 (source: NCBI BLink).  protein_id AT1G05810.1p  transcript_id AT1G05810.1  protein_id AT1G05810.1p  transcript_id AT1G05810.1  
At1g05820	chr1:001749776	0.0	W/1749776-1749913,1750362-1750520,1750628-1750739,1750856-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752730,1753098-1753240,1753393-1753547,1753661-1753767	AT1G05820.1 CDS  gene_syn T20M3.9, T20M3_9  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product aspartic-type endopeptidase/ peptidase  note aspartic-type endopeptidase/ peptidase; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: protease-associated (PA) domain-containing protein (TAIR:AT2G43070.1); Has 1086 Blast hits to 1068 proteins in 167 species: Archae - 0; Bacteria - 39; Metazoa - 570; Fungi - 97; Plants - 225; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G05820.1p  transcript_id AT1G05820.1  protein_id AT1G05820.1p  transcript_id AT1G05820.1  
At1g05820	chr1:001749776	0.0	W/1749776-1749913,1750362-1750520,1750628-1750739,1750856-1750975,1751115-1751272,1751527-1751706,1751931-1751965,1752074-1752230,1752503-1752556,1752638-1752730,1753098-1753240,1753393-1753567	AT1G05820.2 CDS  gene_syn T20M3.9, T20M3_9  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product aspartic-type endopeptidase/ peptidase  note aspartic-type endopeptidase/ peptidase; FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: protease-associated (PA) domain-containing protein (TAIR:AT2G43070.1); Has 1017 Blast hits to 1005 proteins in 169 species: Archae - 0; Bacteria - 48; Metazoa - 507; Fungi - 90; Plants - 228; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT1G05820.2p  transcript_id AT1G05820.2  protein_id AT1G05820.2p  transcript_id AT1G05820.2  
At1g05830	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.1 CDS  gene_syn ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2, ATX2, SDG30, SET DOMAIN PROTEIN 30, T20M3.10, T20M3_10  gene ATX2  function Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process regulation of transcription|GO:0045449|18375658|IMP  go_process histone H3-K4 methylation|GO:0051568|18375658|IMP  go_function DNA binding|GO:0003677||ISS  go_function histone methyltransferase activity (H3-K4 specific)|GO:0042800|18375658|IMP  product ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2); DNA binding / histone methyltransferase(H3-K4 specific)  note ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2 (ATX2); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific), DNA binding; INVOLVED IN: histone H3-K4 methylation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stigma, rosette leaf, male gametophyte, root; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), FY-rich, C-terminal (InterPro:IPR003889), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, N-terminal (InterPro:IPR003888), Post-SET zinc-binding region (InterPro:IPR003616), FY-rich, C-terminal subgroup (InterPro:IPR018516), PWWP (InterPro:IPR000313), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (TAIR:AT2G31650.1); Has 5236 Blast hits to 5137 proteins in 350 species: Archae - 2; Bacteria - 292; Metazoa - 2609; Fungi - 549; Plants - 651; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).  protein_id AT1G05830.1p  transcript_id AT1G05830.1  protein_id AT1G05830.1p  transcript_id AT1G05830.1  
At1g05830	chr1:001754452	0.0	W/1754452-1755077,1755262-1755313,1755408-1755482,1755563-1755782,1756068-1756194,1756311-1756415,1756562-1756767,1756865-1756957,1757047-1757144,1757227-1757388,1757734-1757877,1757974-1758021,1758146-1758263,1758341-1758406,1758523-1758584,1758737-1758793,1758924-1758992,1759115-1759310,1759618-1759863,1760191-1760252,1760335-1760412,1760717-1760812,1760902-1761005,1761084-1761225	AT1G05830.2 CDS  gene_syn ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2, ATX2, SDG30, SET DOMAIN PROTEIN 30, T20M3.10, T20M3_10  gene ATX2  function Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process regulation of transcription|GO:0045449|18375658|IMP  go_process histone H3-K4 methylation|GO:0051568|18375658|IMP  go_function DNA binding|GO:0003677||ISS  go_function histone methyltransferase activity (H3-K4 specific)|GO:0042800|18375658|IMP  product ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2); DNA binding / histone methyltransferase(H3-K4 specific)  note ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2 (ATX2); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific), DNA binding; INVOLVED IN: histone H3-K4 methylation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stigma, rosette leaf, male gametophyte, root; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), FY-rich, C-terminal (InterPro:IPR003889), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, N-terminal (InterPro:IPR003888), Post-SET zinc-binding region (InterPro:IPR003616), FY-rich, C-terminal subgroup (InterPro:IPR018516), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (TAIR:AT2G31650.1); Has 5236 Blast hits to 5137 proteins in 350 species: Archae - 2; Bacteria - 292; Metazoa - 2609; Fungi - 549; Plants - 651; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).  protein_id AT1G05830.2p  transcript_id AT1G05830.2  protein_id AT1G05830.2p  transcript_id AT1G05830.2  
At1g05835	chr1:001762248	0.0	W/1762248-1762308,1762380-1762702	AT1G05835.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32583.1); Has 50 Blast hits to 50 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05835.1p  transcript_id AT1G05835.1  protein_id AT1G05835.1p  transcript_id AT1G05835.1  
At1g05840	chr1:001762843	0.0	C/1762843-1762988,1763091-1763162,1763344-1763419,1763541-1763628,1763804-1763877,1763953-1764115,1764367-1764594,1765301-1765548,1765631-1765760,1765918-1766150	AT1G05840.1 CDS  gene_syn T20M3.11, T20M3_11  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G02740.1); Has 2039 Blast hits to 2022 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 414; Fungi - 414; Plants - 1048; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G05840.1p  transcript_id AT1G05840.1  protein_id AT1G05840.1p  transcript_id AT1G05840.1  
At1g05850	chr1:001766833	0.0	C/1766833-1767250,1767352-1767511,1767730-1768117	AT1G05850.1 CDS  gene_syn CHITINASE-LIKE PROTEIN 1, CTL1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC ROOT HAIR 2, ELP, ELP1, ERH2, HOT2, POM-POM1, POM1, SENSITIVE TO HOT TEMPERATURES 2, T20M3.12, T20M3_12  gene POM1  function Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.  go_component endomembrane system|GO:0012505||IEA  go_function chitinase activity|GO:0004568||IEA  go_process response to heat|GO:0009408|10760305|IMP  go_process response to water deprivation|GO:0009414|17156413|IMP  go_process response to salt stress|GO:0009651|17156413|IMP  go_process response to cytokinin stimulus|GO:0009735|11678273|IMP  go_process lignin biosynthetic process|GO:0009809|16159327|IGI  go_process multidimensional cell growth|GO:0009825|7743935|IMP  go_process root epidermal cell differentiation|GO:0010053|9165126|IMP  go_process regulation of salicylic acid metabolic process|GO:0010337|17156413|IMP  go_process carbohydrate biosynthetic process|GO:0016051|16159327|IGI  go_function chitinase activity|GO:0004568||ISS  product POM1 (POM-POM1); chitinase  note POM-POM1 (POM1); FUNCTIONS IN: chitinase activity; INVOLVED IN: in 9 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase (TAIR:AT3G16920.1); Has 1331 Blast hits to 1327 proteins in 313 species: Archae - 0; Bacteria - 305; Metazoa - 33; Fungi - 2; Plants - 970; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G05850.1p  transcript_id AT1G05850.1  protein_id AT1G05850.1p  transcript_id AT1G05850.1  
At1g05860	chr1:001769061	0.0	W/1769061-1769638,1770085-1770349	AT1G05860.1 CDS  gene_syn T20M3.13, T20M3_13  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 51 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G05860.1p  transcript_id AT1G05860.1  protein_id AT1G05860.1p  transcript_id AT1G05860.1  
At1g05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.1 CDS  gene_syn T20M3.14, T20M3_14  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31560.2); Has 124 Blast hits to 124 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05870.1p  transcript_id AT1G05870.1  protein_id AT1G05870.1p  transcript_id AT1G05870.1  
At1g05870	chr1:001772454	0.0	C/1772454-1772533,1772739-1773228	AT1G05870.2 CDS  gene_syn T20M3.14, T20M3_14  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31560.2); Has 124 Blast hits to 124 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05870.2p  transcript_id AT1G05870.2  protein_id AT1G05870.2p  transcript_id AT1G05870.2  
At1g05880	chr1:001775655	0.0	W/1775655-1775887,1775985-1776084,1776185-1776275,1776357-1776553,1776687-1776770,1776845-1776894,1776988-1777095,1777195-1777273,1777358-1777438,1777525-1777569,1777653-1777724,1777824-1777923,1778000-1778126,1778228-1778330	AT1G05880.1 CDS  gene_syn T20M3.15, T20M3_15  go_component tight junction|GO:0005923||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / protein binding / structural molecule/ zinc ion binding  note nucleic acid binding / protein binding / structural molecule/ zinc ion binding; FUNCTIONS IN: protein binding, structural molecule activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: tight junction; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C6HC-type (InterPro:IPR002867), Claudin, conserved site (InterPro:IPR017974), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) (TAIR:AT2G31510.1); Has 1062 Blast hits to 1057 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 571; Fungi - 100; Plants - 172; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT1G05880.1p  transcript_id AT1G05880.1  protein_id AT1G05880.1p  transcript_id AT1G05880.1  
At1g05890	chr1:001779631	0.0	W/1779631-1779786,1780174-1780298,1780526-1780631,1780720-1780810,1781087-1781259,1781695-1781799,1781927-1782015,1782191-1782298,1782454-1782544,1782650-1782739,1782821-1782868,1783162-1783233,1783319-1783412,1783502-1783628,1783983-1784166	AT1G05890.1 CDS  gene_syn T20M3.16, T20M3_16  go_function nucleic acid binding|GO:0003676||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) (TAIR:AT2G31510.1); Has 2323 Blast hits to 2304 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 1138; Fungi - 377; Plants - 363; Viruses - 5; Other Eukaryotes - 440 (source: NCBI BLink).  protein_id AT1G05890.1p  transcript_id AT1G05890.1  protein_id AT1G05890.1p  transcript_id AT1G05890.1  
At1g05894	chr1:001784831	0.0	W/1784831-1786204	AT1G05894.1 CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31480.1); Has 46 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 15; Metazoa - 5; Fungi - 2; Plants - 7; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G05894.1p  transcript_id AT1G05894.1  protein_id AT1G05894.1p  transcript_id AT1G05894.1  
At1g05900	chr1:001786896	0.0	W/1786896-1787043,1787148-1787266,1787451-1787517,1787617-1787688,1787786-1787910,1788222-1788288,1788415-1788506,1788697-1788834,1788921-1789025,1789162-1789245,1789359-1789502	AT1G05900.2 CDS  gene_syn T20M3.18, T20M3_18  go_component intracellular|GO:0005622||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_function 4 iron, 4 sulfur cluster binding|GO:0051539||IEA  go_process base-excision repair|GO:0006284||ISS  product endonuclease-related  note endonuclease-related; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III-like, iron-sulphur cluster loop (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), Helix-hairpin-helix motif (InterPro:IPR000445), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease-related (TAIR:AT2G31450.1); Has 9734 Blast hits to 9731 proteins in 1448 species: Archae - 228; Bacteria - 5250; Metazoa - 197; Fungi - 131; Plants - 86; Viruses - 0; Other Eukaryotes - 3842 (source: NCBI BLink).  protein_id AT1G05900.2p  transcript_id AT1G05900.2  protein_id AT1G05900.2p  transcript_id AT1G05900.2  
At1g05900	chr1:001786896	0.0	W/1786896-1787043,1787148-1787266,1787451-1787517,1787617-1787688,1787786-1787910,1788222-1788288,1788415-1788506,1788697-1788834,1788921-1789037	AT1G05900.1 CDS  gene_syn T20M3.18, T20M3_18  go_component intracellular|GO:0005622||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function sequence-specific DNA binding|GO:0043565||IEA  go_process base-excision repair|GO:0006284||ISS  product endonuclease-related  note endonuclease-related; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, conserved site-2 (InterPro:IPR004036), Helix-hairpin-helix motif (InterPro:IPR000445), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease-related (TAIR:AT2G31450.1); Has 8162 Blast hits to 8160 proteins in 1420 species: Archae - 209; Bacteria - 4407; Metazoa - 108; Fungi - 108; Plants - 45; Viruses - 0; Other Eukaryotes - 3285 (source: NCBI BLink).  protein_id AT1G05900.1p  transcript_id AT1G05900.1  protein_id AT1G05900.1p  transcript_id AT1G05900.1  
At1g05910	chr1:001790796	0.0	W/1790796-1791023,1791310-1791411,1791518-1793341,1793423-1793611,1793759-1793895,1794410-1794652,1795071-1795257,1795528-1795593,1795706-1795955,1796097-1796503	AT1G05910.1 CDS  gene_syn T20M3.19, T20M3_19  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  product cell division cycle protein 48-related / CDC48-related  note cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT3G15120.1); Has 58172 Blast hits to 33052 proteins in 1905 species: Archae - 899; Bacteria - 20022; Metazoa - 15513; Fungi - 5463; Plants - 2603; Viruses - 554; Other Eukaryotes - 13118 (source: NCBI BLink).  protein_id AT1G05910.1p  transcript_id AT1G05910.1  protein_id AT1G05910.1p  transcript_id AT1G05910.1  
At1g05920	chr1:001797044	0.0	W/1797044-1797991	AT1G05920.1 CDS  gene_syn T20M3.20, T20M3_20  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G24850.1); Has 117 Blast hits to 106 proteins in 18 species: Archae - 0; Bacteria - 7; Metazoa - 15; Fungi - 8; Plants - 62; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G05920.1p  transcript_id AT1G05920.1  protein_id AT1G05920.1p  transcript_id AT1G05920.1  
At1g05925	chr1:001798901	0.0	C/1798901-1799062	AT1G05925.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G05925.1p  transcript_id AT1G05925.1  protein_id AT1G05925.1p  transcript_id AT1G05925.1  
At1g05930	chr1:001799418	0.0	W/1799418-1800289,1800849-1800933	AT1G05930.1 CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G24850.1); Has 52 Blast hits to 52 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05930.1p  transcript_id AT1G05930.1  protein_id AT1G05930.1p  transcript_id AT1G05930.1  
At1g05940	chr1:001801365	0.0	C/1801365-1801502,1801579-1801674,1802024-1802260,1802357-1802533,1802646-1802870,1802942-1803118,1803198-1803607,1803693-1803942	AT1G05940.1 CDS  gene_syn CAT9, CATIONIC AMINO ACID TRANSPORTER 9, T21E18.1, T21E18_1  gene CAT9  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product CAT9 (CATIONIC AMINO ACID TRANSPORTER 9); cationic amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 9 (CAT9); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT4 (CATIONIC AMINO ACID TRANSPORTER 4); cationic amino acid transmembrane transporter (TAIR:AT3G03720.1); Has 18735 Blast hits to 18518 proteins in 1295 species: Archae - 308; Bacteria - 13721; Metazoa - 1647; Fungi - 1665; Plants - 214; Viruses - 0; Other Eukaryotes - 1180 (source: NCBI BLink).  protein_id AT1G05940.1p  transcript_id AT1G05940.1  protein_id AT1G05940.1p  transcript_id AT1G05940.1  
At1g05950	chr1:001804573	0.0	C/1804573-1804724,1804816-1804882,1804952-1805106,1805187-1805253,1805369-1805584,1805667-1805879,1805964-1806117,1806538-1806685,1806763-1807198,1807307-1807471	AT1G05950.1 CDS  gene_syn T21E18.2, T21E18_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 25 Blast hits to 20 proteins in 9 species: Archae - 3; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G05950.1p  transcript_id AT1G05950.1  protein_id AT1G05950.1p  transcript_id AT1G05950.1  
At1g05960	chr1:001808478	0.0	C/1808478-1808636,1808736-1808936,1809019-1809153,1809222-1809362,1809506-1809700,1809813-1809940,1810506-1810581,1810872-1811021,1811163-1811516,1811608-1811757,1812450-1812739,1812833-1813029,1813134-1813288,1813386-1813433,1813927-1814055,1814144-1814258,1814328-1814390,1814447-1814562,1814659-1814733,1814926-1815060	AT1G05960.2 CDS  gene_syn T21E18.21, T21E18_21  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: cyclin-related (TAIR:AT2G41830.1).  protein_id AT1G05960.2p  transcript_id AT1G05960.2  protein_id AT1G05960.2p  transcript_id AT1G05960.2  
At1g05960	chr1:001808478	0.0	C/1808478-1808636,1808736-1808936,1809019-1809153,1809222-1809362,1809506-1809700,1809813-1809940,1810506-1810581,1810872-1811021,1811163-1811516,1811608-1811757,1812450-1812739,1812833-1813029,1813134-1813288,1813386-1813433,1813927-1814055,1814144-1814258,1814447-1814562,1814659-1814733,1814926-1815060	AT1G05960.1 CDS  gene_syn T21E18.21, T21E18_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: cyclin-related (TAIR:AT2G41830.1); Has 273 Blast hits to 272 proteins in 104 species: Archae - 0; Bacteria - 5; Metazoa - 121; Fungi - 80; Plants - 62; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G05960.1p  transcript_id AT1G05960.1  protein_id AT1G05960.1p  transcript_id AT1G05960.1  
At1g05970	chr1:001816253	0.0	C/1816253-1816402,1816545-1816991	AT1G05970.1 CDS  gene_syn T21E18.3, T21E18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 40 Blast hits to 40 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05970.1p  transcript_id AT1G05970.1  protein_id AT1G05970.1p  transcript_id AT1G05970.1  
At1g05970	chr1:001816253	0.0	C/1816253-1816408,1816545-1816991	AT1G05970.2 CDS  gene_syn T21E18.3, T21E18_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G05970.2p  transcript_id AT1G05970.2  protein_id AT1G05970.2p  transcript_id AT1G05970.2  
At1g05980	chr1:001817400	0.0	W/1817400-1817471	AT1G05980.1 tRNA  gene_syn 51952.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: TGT)  transcript_id AT1G05980.1  
At1g05990	chr1:001818588	0.0	W/1818588-1819040	AT1G05990.1 CDS  gene_syn T21E18.4, T21E18_4  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT4G03290.1); Has 21203 Blast hits to 14804 proteins in 1337 species: Archae - 0; Bacteria - 147; Metazoa - 10158; Fungi - 3748; Plants - 3682; Viruses - 0; Other Eukaryotes - 3468 (source: NCBI BLink).  protein_id AT1G05990.1p  transcript_id AT1G05990.1  protein_id AT1G05990.1p  transcript_id AT1G05990.1  
At1g06000	chr1:001820495	0.0	C/1820495-1821802	AT1G06000.1 CDS  gene_syn T21E18.5, T21E18_5  function encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols  go_component cellular_component|GO:0005575||ND  go_process flavonol biosynthetic process|GO:0051555|17314094|IDA  go_function UDP-glycosyltransferase activity|GO:0008194|17314094|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glucoronosyl/UDP-glucosyl transferase family protein  note UDP-glucoronosyl/UDP-glucosyl transferase family protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: flavonol biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT89B1 (UDP-GLUCOSYL TRANSFERASE 89B1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 4 -O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G73880.1); Has 3254 Blast hits to 3210 proteins in 234 species: Archae - 0; Bacteria - 69; Metazoa - 492; Fungi - 11; Plants - 2628; Viruses - 40; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G06000.1p  transcript_id AT1G06000.1  protein_id AT1G06000.1p  transcript_id AT1G06000.1  
At1g06010	chr1:001823347	0.0	W/1823347-1823410,1823498-1823670	AT1G06010.1 CDS  gene_syn T21E18.6, T21E18_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06010.1p  transcript_id AT1G06010.1  protein_id AT1G06010.1p  transcript_id AT1G06010.1  
At1g06020	chr1:001824548	0.0	W/1824548-1824949,1825314-1825646,1825725-1825841,1825916-1826101	AT1G06020.1 CDS  gene_syn T21E18.7, T21E18_7  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process D-ribose metabolic process|GO:0006014||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 11946 Blast hits to 11944 proteins in 1309 species: Archae - 220; Bacteria - 7571; Metazoa - 137; Fungi - 87; Plants - 279; Viruses - 0; Other Eukaryotes - 3652 (source: NCBI BLink).  protein_id AT1G06020.1p  transcript_id AT1G06020.1  protein_id AT1G06020.1p  transcript_id AT1G06020.1  
At1g06030	chr1:001826880	0.0	W/1826880-1827284,1827374-1827706,1827798-1827914,1827996-1828130	AT1G06030.1 CDS  gene_syn T21E18.8, T21E18_8  go_process sucrose biosynthetic process|GO:0005986||IEA  go_process D-ribose metabolic process|GO:0006014||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_process acetate fermentation|GO:0019654||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT1G06020.1); Has 11612 Blast hits to 11610 proteins in 1303 species: Archae - 214; Bacteria - 7383; Metazoa - 126; Fungi - 79; Plants - 260; Viruses - 0; Other Eukaryotes - 3550 (source: NCBI BLink).  protein_id AT1G06030.1p  transcript_id AT1G06030.1  protein_id AT1G06030.1p  transcript_id AT1G06030.1  
At1g06040	chr1:001828662	0.0	C/1828662-1828904,1828987-1829307,1829477-1829659	AT1G06040.1 CDS  gene_syn SALT TOLERANCE, STO, T21E18.9, T21E18_9  gene STO  function Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.  go_component nucleus|GO:0005634|17605755|IDA  go_process response to light stimulus|GO:0009416|17605755|IEP  go_process photomorphogenesis|GO:0009640|17605755|IGI  go_process response to salt stress|GO:0009651|8662738|IGI  go_function DNA binding|GO:0003677|8662738|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|11018516|IPI  go_function zinc ion binding|GO:0008270||ISS  product STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding  note SALT TOLERANCE (STO); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding, zinc ion binding; INVOLVED IN: response to salt stress, response to light stimulus, photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: STH; protein domain specific binding / transcription factor/ zinc ion binding (TAIR:AT2G31380.1); Has 1274 Blast hits to 884 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 1187; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G06040.1p  transcript_id AT1G06040.1  protein_id AT1G06040.1p  transcript_id AT1G06040.1  
At1g06040	chr1:001828957	0.0	C/1828957-1829307,1829477-1829659	AT1G06040.2 CDS  gene_syn SALT TOLERANCE, STO, T21E18.9, T21E18_9  gene STO  function Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling.  go_component nucleus|GO:0005634|17605755|IDA  go_process response to light stimulus|GO:0009416|17605755|IEP  go_process photomorphogenesis|GO:0009640|17605755|IGI  go_process response to salt stress|GO:0009651|8662738|IGI  go_function DNA binding|GO:0003677|8662738|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|11018516|IPI  go_function zinc ion binding|GO:0008270||ISS  product STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding  note SALT TOLERANCE (STO); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding, zinc ion binding; INVOLVED IN: response to salt stress, response to light stimulus, photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: STH; protein domain specific binding / transcription factor/ zinc ion binding (TAIR:AT2G31380.1); Has 1274 Blast hits to 882 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 1189; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G06040.2p  transcript_id AT1G06040.2  protein_id AT1G06040.2p  transcript_id AT1G06040.2  
At1g06050	chr1:001830726	0.0	C/1830726-1831667	AT1G06050.1 CDS  gene_syn T21E18.10, T21E18_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10750.1); Has 180 Blast hits to 179 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G06050.1p  transcript_id AT1G06050.1  protein_id AT1G06050.1p  transcript_id AT1G06050.1  
At1g06060	chr1:001833071	0.0	W/1833071-1833097,1833420-1833561,1833655-1833802,1833886-1833961,1834069-1834180,1834275-1834366,1834472-1834516	AT1G06060.1 CDS  gene_syn T21E18.11, T21E18_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RanBPM-related  note RanBPM-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61150.6); Has 659 Blast hits to 568 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 401; Fungi - 95; Plants - 120; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G06060.1p  transcript_id AT1G06060.1  protein_id AT1G06060.1p  transcript_id AT1G06060.1  
At1g06070	chr1:001835201	0.0	C/1835201-1835607,1835945-1836029,1836114-1836246,1836470-1837116	AT1G06070.1 CDS  gene_syn T21E18.12, T21E18_12  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP transcription factor, putative (bZIP69)  note bZIP transcription factor, putative (bZIP69); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor (POSF21) (TAIR:AT2G31370.5); Has 38161 Blast hits to 16134 proteins in 672 species: Archae - 6; Bacteria - 1085; Metazoa - 14914; Fungi - 4009; Plants - 2167; Viruses - 428; Other Eukaryotes - 15552 (source: NCBI BLink).  protein_id AT1G06070.1p  transcript_id AT1G06070.1  protein_id AT1G06070.1p  transcript_id AT1G06070.1  
At1g06080	chr1:001843661	0.0	W/1843661-1843990,1844629-1844769,1844846-1844986,1845102-1845208,1845895-1846093	AT1G06080.1 CDS  gene_syn ADS1, DELTA 9 DESATURASE, DELTA 9 DESATURASE 1, T21E18.13, T21E18_13  gene ADS1  function homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature.  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product ADS1 (DELTA 9 DESATURASE 1); oxidoreductase  note DELTA 9 DESATURASE 1 (ADS1); FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: ADS2 (16:0Delta9 Arabidopsis desaturase 2); oxidoreductase (TAIR:AT2G31360.1); Has 2722 Blast hits to 2722 proteins in 596 species: Archae - 0; Bacteria - 1080; Metazoa - 690; Fungi - 150; Plants - 71; Viruses - 3; Other Eukaryotes - 728 (source: NCBI BLink).  protein_id AT1G06080.1p  transcript_id AT1G06080.1  protein_id AT1G06080.1p  transcript_id AT1G06080.1  
At1g06090	chr1:001847921	0.0	W/1847921-1848232,1848316-1848456,1848589-1848729,1849109-1849215,1849302-1849500	AT1G06090.1 CDS  gene_syn T21E18.14, T21E18_14  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product fatty acid desaturase family protein  note fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase family protein (TAIR:AT1G06120.1); Has 2699 Blast hits to 2699 proteins in 596 species: Archae - 0; Bacteria - 1084; Metazoa - 686; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 703 (source: NCBI BLink).  protein_id AT1G06090.1p  transcript_id AT1G06090.1  protein_id AT1G06090.1p  transcript_id AT1G06090.1  
At1g06100	chr1:001851530	0.0	W/1851530-1851841,1851957-1852097,1852223-1852363,1852612-1852718,1852821-1853019	AT1G06100.1 CDS  gene_syn T21E18.15, T21E18_15  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product fatty acid desaturase family protein  note fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase family protein (TAIR:AT1G06090.1); Has 2703 Blast hits to 2703 proteins in 596 species: Archae - 0; Bacteria - 1082; Metazoa - 693; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 702 (source: NCBI BLink).  protein_id AT1G06100.1p  transcript_id AT1G06100.1  protein_id AT1G06100.1p  transcript_id AT1G06100.1  
At1g06110	chr1:001853237	0.0	C/1853237-1853315,1853405-1853511,1853615-1853833,1853915-1854616,1854735-1854938	AT1G06110.1 CDS  gene_syn SKIP16, SKP1/ASK-interacting protein 16, T21E18.16, T21E18_16  gene SKIP16  go_component SCF ubiquitin ligase complex|GO:0019005|12795696|IPI  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|12795696|IPI  product SKIP16 (SKP1/ASK-interacting protein 16); protein binding  note SKP1/ASK-interacting protein 16 (SKIP16); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ApaG (InterPro:IPR007474); Has 1427 Blast hits to 1427 proteins in 496 species: Archae - 0; Bacteria - 836; Metazoa - 173; Fungi - 41; Plants - 47; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).  protein_id AT1G06110.1p  transcript_id AT1G06110.1  protein_id AT1G06110.1p  transcript_id AT1G06110.1  
At1g06120	chr1:001855963	0.0	W/1855963-1856274,1856355-1856495,1856623-1856763,1857125-1857231,1857318-1857516	AT1G06120.1 CDS  gene_syn T21E18.17, T21E18_17  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product fatty acid desaturase family protein  note fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase family protein (TAIR:AT1G06090.1); Has 2696 Blast hits to 2696 proteins in 596 species: Archae - 0; Bacteria - 1082; Metazoa - 689; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 699 (source: NCBI BLink).  protein_id AT1G06120.1p  transcript_id AT1G06120.1  protein_id AT1G06120.1p  transcript_id AT1G06120.1  
At1g06130	chr1:001858034	0.0	C/1858034-1858186,1858334-1858432,1858518-1858592,1858693-1858793,1859329-1859452,1859561-1859764,1859980-1860162,1860587-1860640	AT1G06130.2 CDS  gene_syn GLX2-4, T21E18.18, T21E18_18, glyoxalase 2-4  gene GLX2-4  go_component chloroplast|GO:0009507|18431481|IDA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process methylglyoxal catabolic process to D-lactate|GO:0019243||ISS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416||ISS  product GLX2-4 (glyoxalase 2-4); hydrolase/ hydroxyacylglutathione hydrolase/ zinc ion binding  note glyoxalase 2-4 (GLX2-4); FUNCTIONS IN: hydrolase activity, hydroxyacylglutathione hydrolase activity, zinc ion binding; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding (TAIR:AT2G31350.2); Has 10411 Blast hits to 10410 proteins in 1392 species: Archae - 227; Bacteria - 5410; Metazoa - 429; Fungi - 200; Plants - 123; Viruses - 0; Other Eukaryotes - 4022 (source: NCBI BLink).  protein_id AT1G06130.2p  transcript_id AT1G06130.2  protein_id AT1G06130.2p  transcript_id AT1G06130.2  
At1g06130	chr1:001858034	0.0	C/1858034-1858186,1858334-1858432,1858518-1858592,1858693-1858793,1859329-1859452,1859561-1859764,1859980-1860165,1860587-1860640	AT1G06130.1 CDS  gene_syn GLX2-4, T21E18.18, T21E18_18, glyoxalase 2-4  gene GLX2-4  go_component chloroplast|GO:0009507|18431481|IDA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process methylglyoxal catabolic process to D-lactate|GO:0019243||ISS  go_function hydroxyacylglutathione hydrolase activity|GO:0004416||ISS  product GLX2-4 (glyoxalase 2-4); hydrolase/ hydroxyacylglutathione hydrolase/ zinc ion binding  note glyoxalase 2-4 (GLX2-4); FUNCTIONS IN: hydrolase activity, hydroxyacylglutathione hydrolase activity, zinc ion binding; INVOLVED IN: methylglyoxal catabolic process to D-lactate; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding (TAIR:AT2G31350.1); Has 10413 Blast hits to 10412 proteins in 1392 species: Archae - 227; Bacteria - 5412; Metazoa - 429; Fungi - 200; Plants - 123; Viruses - 0; Other Eukaryotes - 4022 (source: NCBI BLink).  protein_id AT1G06130.1p  transcript_id AT1G06130.1  protein_id AT1G06130.1p  transcript_id AT1G06130.1  
At1g06135	chr1:001862307	0.0	W/1862307-1862516	AT1G06135.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31345.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06135.1p  transcript_id AT1G06135.1  protein_id AT1G06135.1p  transcript_id AT1G06135.1  
At1g06137	chr1:001863544	0.0	C/1863544-1863750	AT1G06137.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06135.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06137.1p  transcript_id AT1G06137.1  protein_id AT1G06137.1p  transcript_id AT1G06137.1  
At1g06140	chr1:001864796	0.0	W/1864796-1866472	AT1G06140.1 CDS  gene_syn T21E18.19, T21E18_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2758 (embryo defective 2758) (TAIR:AT4G33990.1); Has 13889 Blast hits to 4898 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 52; Plants - 13470; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).  protein_id AT1G06140.1p  transcript_id AT1G06140.1  protein_id AT1G06140.1p  transcript_id AT1G06140.1  
At1g06145	chr1:001867129	0.0	C/1867129-1868862	AT1G06145.1 CDS  gene_syn EMB1444, EMBRYO DEFECTIVE 1444  gene EMB1444  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1444 (EMBRYO DEFECTIVE 1444)  note EMBRYO DEFECTIVE 1444 (EMB1444); INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 13972 Blast hits to 5050 proteins in 152 species: Archae - 1; Bacteria - 4; Metazoa - 54; Fungi - 73; Plants - 13519; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT1G06145.1p  transcript_id AT1G06145.1  protein_id AT1G06145.1p  transcript_id AT1G06145.1  
At1g06150	chr1:001869228	0.0	C/1869228-1869311,1869599-1869724,1869863-1870003,1870157-1870258,1870367-1871575,1871667-1871786,1871914-1871973,1872226-1872267,1872350-1872431,1872745-1872888,1873100-1873194	AT1G06150.1 CDS  gene_syn T21E18.20, T21E18_20  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) protein-related (TAIR:AT2G31280.1); Has 378 Blast hits to 227 proteins in 45 species: Archae - 0; Bacteria - 25; Metazoa - 54; Fungi - 12; Plants - 201; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G06150.1p  transcript_id AT1G06150.1  protein_id AT1G06150.1p  transcript_id AT1G06150.1  
At1g06149	chr1:001873360	0.0	C/1873360-1873464	AT1G06149.1 CDS  gene_syn CPuORF8, Conserved peptide upstream open reading frame 8  gene CPuORF8  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF8 represents a conserved upstream opening reading frame relative to major ORF AT1G06150.1  product CPuORF8 (Conserved peptide upstream open reading frame 8)  note Conserved peptide upstream open reading frame 8 (CPuORF8); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) protein-related (TAIR:AT2G31280.4); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06149.1p  transcript_id AT1G06149.1  protein_id AT1G06149.1p  transcript_id AT1G06149.1  
At1g06148	chr1:001875301	0.0	C/1875301-1875328,1876840-1876955,1877043-1877150	AT1G06148.2 CDS  function Unknown gene  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast.  protein_id AT1G06148.2p  transcript_id AT1G06148.2  protein_id AT1G06148.2p  transcript_id AT1G06148.2  
At1g06148	chr1:001876836	0.0	C/1876836-1876955,1877043-1877150	AT1G06148.1 CDS  function Unknown gene  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast.  protein_id AT1G06148.1p  transcript_id AT1G06148.1  protein_id AT1G06148.1p  transcript_id AT1G06148.1  
At1g06160	chr1:001883046	0.0	W/1883046-1883780	AT1G06160.1 CDS  gene_syn F9P14.2, F9P14_2, OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59, ORA59  gene ORA59  function encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.  go_process regulation of transcription, DNA-dependent|GO:0006355|10715325|TAS  go_process response to ethylene stimulus|GO:0009723|18467450|IEP  go_process response to jasmonic acid stimulus|GO:0009753|18467450|IEP  go_process jasmonic acid and ethylene-dependent systemic resistance|GO:0009861|18467450|IMP  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process defense response to fungus|GO:0050832|18467450|IMP  go_function DNA binding|GO:0003677|10715325|TAS  go_function transcription factor activity|GO:0003700|10715325|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription activator activity|GO:0016563|10715325|TAS  product ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59); DNA binding / transcription activator/ transcription factor  note OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59 (ORA59); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ATERF15 (Ethylene-responsive element binding factor 15); DNA binding / transcription activator/ transcription factor (TAIR:AT2G31230.1); Has 4337 Blast hits to 4111 proteins in 265 species: Archae - 0; Bacteria - 28; Metazoa - 323; Fungi - 35; Plants - 3763; Viruses - 4; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT1G06160.1p  transcript_id AT1G06160.1  protein_id AT1G06160.1p  transcript_id AT1G06160.1  
At1g06170	chr1:001885146	0.0	C/1885146-1885268,1885341-1885748,1885833-1886564	AT1G06170.1 CDS  gene_syn F9P14.3, F9P14_3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G31220.1); Has 696 Blast hits to 696 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G06170.1p  transcript_id AT1G06170.1  protein_id AT1G06170.1p  transcript_id AT1G06170.1  
At1g06170	chr1:001885146	0.0	C/1885146-1885268,1885341-1885748,1885833-1886564	AT1G06170.2 CDS  gene_syn F9P14.3, F9P14_3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G31220.1); Has 696 Blast hits to 696 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G06170.2p  transcript_id AT1G06170.2  protein_id AT1G06170.2p  transcript_id AT1G06170.2  
At1g06180	chr1:001889510	0.0	W/1889510-1889642,1889797-1889926,1890612-1891089	AT1G06180.1 CDS  gene_syn ATMYB13, ATMYBLFGN, F9P14.4, F9P14_4, MYB DOMAIN PROTEIN 13  gene ATMYB13  function member of MYB3R- and R2R3- type MYB- encoding genes  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATMYB13 (MYB DOMAIN PROTEIN 13); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 13 (ATMYB13); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB14 (MYB DOMAIN PROTEIN 14); DNA binding / transcription factor (TAIR:AT2G31180.1); Has 6306 Blast hits to 5800 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 681; Fungi - 291; Plants - 3793; Viruses - 6; Other Eukaryotes - 1535 (source: NCBI BLink).  protein_id AT1G06180.1p  transcript_id AT1G06180.1  protein_id AT1G06180.1p  transcript_id AT1G06180.1  
At1g06190	chr1:001892467	0.0	C/1892467-1893626,1894033-1894078	AT1G06190.1 CDS  gene_syn F9P14.5, F9P14_5  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||IEA  product ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 1742 Blast hits to 1480 proteins in 252 species: Archae - 4; Bacteria - 198; Metazoa - 552; Fungi - 215; Plants - 95; Viruses - 50; Other Eukaryotes - 628 (source: NCBI BLink).  protein_id AT1G06190.1p  transcript_id AT1G06190.1  protein_id AT1G06190.1p  transcript_id AT1G06190.1  
At1g06190	chr1:001892589	0.0	C/1892589-1892640,1892846-1893626,1894033-1894078	AT1G06190.2 CDS  gene_syn F9P14.5, F9P14_5  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||IEA  product ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 44 Blast hits to 44 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 22; Viruses - 3; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G06190.2p  transcript_id AT1G06190.2  protein_id AT1G06190.2p  transcript_id AT1G06190.2  
At1g06200	chr1:001894604	0.0	C/1894604-1894688,1894787-1894893,1894991-1895174,1895762-1895934,1896781-1896852	AT1G06200.1 CDS  gene_syn F9P14.6, F9P14_6  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  product serine-type peptidase  note serine-type peptidase; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31140.1); Has 156 Blast hits to 156 proteins in 51 species: Archae - 0; Bacteria - 4; Metazoa - 57; Fungi - 17; Plants - 68; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G06200.1p  transcript_id AT1G06200.1  protein_id AT1G06200.1p  transcript_id AT1G06200.1  
At1g06210	chr1:001897567	0.0	W/1897567-1898052,1898141-1898422,1898603-1898986	AT1G06210.1 CDS  gene_syn F9P14.7, F9P14_7  go_component intracellular|GO:0005622||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT5G16880.2); Has 1056 Blast hits to 1054 proteins in 134 species: Archae - 0; Bacteria - 6; Metazoa - 652; Fungi - 172; Plants - 139; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT1G06210.1p  transcript_id AT1G06210.1  protein_id AT1G06210.1p  transcript_id AT1G06210.1  
At1g06210	chr1:001897567	0.0	W/1897567-1898052,1898141-1898494	AT1G06210.2 CDS  gene_syn F9P14.7, F9P14_7  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT5G16880.3); Has 773 Blast hits to 773 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 495; Fungi - 117; Plants - 132; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G06210.2p  transcript_id AT1G06210.2  protein_id AT1G06210.2p  transcript_id AT1G06210.2  
At1g06220	chr1:001900524	0.0	W/1900524-1901264,1901351-1901419,1901524-1902717,1902829-1902927,1903041-1903199,1903316-1903401,1903486-1903684,1903763-1903873,1903965-1904171,1904485-1904583	AT1G06220.1 CDS  gene_syn CLO, CLOTHO, F9P14.8, F9P14_8, GAMETOPHYTE FACTOR 1, GFA1, MATERNAL EFFECT EMBRYO ARREST 5, MEE5  gene MEE5  function Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component nuclear speck|GO:0016607|18702672|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process regulation of embryo sac egg cell differentiation|GO:0045694|18702672|IMP  go_function translation elongation factor activity|GO:0003746||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding  note MATERNAL EFFECT EMBRYO ARREST 5 (MEE5); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of embryo sac egg cell differentiation; LOCATED IN: nuclear speck, cell wall, plasma membrane; EXPRESSED IN: whole plant, cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor Tu family protein (TAIR:AT5G25230.1); Has 41723 Blast hits to 39499 proteins in 3155 species: Archae - 907; Bacteria - 21795; Metazoa - 1934; Fungi - 1110; Plants - 875; Viruses - 0; Other Eukaryotes - 15102 (source: NCBI BLink).  protein_id AT1G06220.1p  transcript_id AT1G06220.1  protein_id AT1G06220.1p  transcript_id AT1G06220.1  
At1g06220	chr1:001900524	0.0	W/1900524-1901264,1901351-1901419,1901524-1902717,1902829-1902927,1903041-1903199,1903316-1903401,1903486-1903684,1903763-1903873,1903965-1904171,1904485-1904583	AT1G06220.2 CDS  gene_syn CLO, CLOTHO, F9P14.8, F9P14_8, GAMETOPHYTE FACTOR 1, GFA1, MATERNAL EFFECT EMBRYO ARREST 5, MEE5  gene MEE5  function Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component nuclear speck|GO:0016607|18702672|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process regulation of embryo sac egg cell differentiation|GO:0045694|18702672|IMP  go_function translation elongation factor activity|GO:0003746||ISS  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product MEE5 (MATERNAL EFFECT EMBRYO ARREST 5); GTP binding / GTPase/ translation elongation factor/ translation factor, nucleic acid binding  note MATERNAL EFFECT EMBRYO ARREST 5 (MEE5); FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of embryo sac egg cell differentiation; LOCATED IN: nuclear speck, cell wall, plasma membrane; EXPRESSED IN: whole plant, cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), Elongation factor G, III and V (InterPro:IPR009022), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor Tu family protein (TAIR:AT5G25230.1); Has 41723 Blast hits to 39499 proteins in 3155 species: Archae - 907; Bacteria - 21795; Metazoa - 1934; Fungi - 1110; Plants - 875; Viruses - 0; Other Eukaryotes - 15102 (source: NCBI BLink).  protein_id AT1G06220.2p  transcript_id AT1G06220.2  protein_id AT1G06220.2p  transcript_id AT1G06220.2  
At1g06225	chr1:001905975	0.0	W/1905975-1906226	AT1G06225.1 CDS  gene_syn CLAVATA3/ESR-RELATED 3, CLE3  gene CLE3  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE3 (CLAVATA3/ESR-RELATED 3); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 3 (CLE3); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; BEST Arabidopsis thaliana protein match is: CLE4 (CLAVATA3/ESR-RELATED 4); protein binding / receptor binding (TAIR:AT2G31081.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06225.1p  transcript_id AT1G06225.1  protein_id AT1G06225.1p  transcript_id AT1G06225.1  
At1g06230	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.1 CDS  gene_syn F9P14.9, F9P14_9, GLOBAL TRANSCRIPTION FACTOR GROUP E 4, GTE4  gene GTE4  function This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.  go_component cellular_component|GO:0005575||ND  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4); DNA binding  note GLOBAL TRANSCRIPTION FACTOR GROUP E 4 (GTE4); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1); Has 8643 Blast hits to 4984 proteins in 266 species: Archae - 4; Bacteria - 189; Metazoa - 4675; Fungi - 976; Plants - 342; Viruses - 47; Other Eukaryotes - 2410 (source: NCBI BLink).  protein_id AT1G06230.1p  transcript_id AT1G06230.1  protein_id AT1G06230.1p  transcript_id AT1G06230.1  
At1g06230	chr1:001907626	0.0	W/1907626-1909722,1909807-1909855,1909935-1910042,1910137-1910183	AT1G06230.2 CDS  gene_syn F9P14.9, F9P14_9, GLOBAL TRANSCRIPTION FACTOR GROUP E 4, GTE4  gene GTE4  function This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.  go_component cellular_component|GO:0005575||ND  go_process DNA mediated transformation|GO:0009294|17827277|IMP  go_function DNA binding|GO:0003677||ISS  product GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4); DNA binding  note GLOBAL TRANSCRIPTION FACTOR GROUP E 4 (GTE4); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA mediated transformation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G17790.1); Has 8643 Blast hits to 4984 proteins in 266 species: Archae - 4; Bacteria - 189; Metazoa - 4675; Fungi - 976; Plants - 342; Viruses - 47; Other Eukaryotes - 2410 (source: NCBI BLink).  protein_id AT1G06230.2p  transcript_id AT1G06230.2  protein_id AT1G06230.2p  transcript_id AT1G06230.2  
At1g06240	chr1:001911166	0.0	W/1911166-1911567,1911642-1911883,1911969-1912065,1912156-1912339,1912441-1912522,1912629-1912701,1912804-1912875	AT1G06240.1 CDS  gene_syn F9P14.10, F9P14_10  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04520.1); Has 603 Blast hits to 603 proteins in 260 species: Archae - 0; Bacteria - 412; Metazoa - 12; Fungi - 30; Plants - 34; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G06240.1p  transcript_id AT1G06240.1  protein_id AT1G06240.1p  transcript_id AT1G06240.1  
At1g06250	chr1:001913339	0.0	C/1913339-1914016,1914190-1914547,1914615-1914850	AT1G06250.1 CDS  gene_syn F9P14.11, F9P14_11  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_component cellular_component|GO:0005575||ND  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: triacylglycerol lipase (TAIR:AT2G31100.1); Has 671 Blast hits to 664 proteins in 121 species: Archae - 0; Bacteria - 95; Metazoa - 25; Fungi - 98; Plants - 311; Viruses - 4; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT1G06250.1p  transcript_id AT1G06250.1  protein_id AT1G06250.1p  transcript_id AT1G06250.1  
At1g06265	chr1:001914943	0.0	C/1914943-1917661	AT1G06265.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G06260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G06265.1  
At1g06265	chr1:001915008	0.0	C/1915008-1916278	AT1G06265.2 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G06260  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G06265.2  
At1g06260	chr1:001916449	0.0	W/1916449-1916893,1916999-1917585	AT1G06260.1 CDS  gene_syn F9P14.12, F9P14_12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT3G19390.1); Has 6142 Blast hits to 6095 proteins in 593 species: Archae - 35; Bacteria - 119; Metazoa - 2800; Fungi - 4; Plants - 1218; Viruses - 120; Other Eukaryotes - 1846 (source: NCBI BLink).  protein_id AT1G06260.1p  transcript_id AT1G06260.1  protein_id AT1G06260.1p  transcript_id AT1G06260.1  
At1g06270	chr1:001918242	0.0	C/1918242-1919273	AT1G06270.1 CDS  gene_syn F9P14.13, F9P14_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09900.1); Has 5658 Blast hits to 2053 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 5533; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G06270.1p  transcript_id AT1G06270.1  protein_id AT1G06270.1p  transcript_id AT1G06270.1  
At1g06280	chr1:001920327	0.0	C/1920327-1920947	AT1G06280.1 CDS  gene_syn F9P14.14, F9P14_14, LBD2, LOB DOMAIN-CONTAINING PROTEIN 2  gene LBD2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product LBD2 (LOB DOMAIN-CONTAINING PROTEIN 2)  note LOB DOMAIN-CONTAINING PROTEIN 2 (LBD2); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD7 (LOB DOMAIN-CONTAINING PROTEIN 7) (TAIR:AT1G72980.1); Has 527 Blast hits to 524 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 516; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G06280.1p  transcript_id AT1G06280.1  protein_id AT1G06280.1p  transcript_id AT1G06280.1  
At1g06290	chr1:001922423	0.0	W/1922423-1922892,1923141-1923258,1923353-1923460,1923570-1923742,1923822-1923921,1924009-1924083,1924193-1924323,1924465-1924600,1924686-1924805,1924897-1925043,1925138-1925242,1925341-1925442,1925760-1926002	AT1G06290.1 CDS  gene_syn ACX3, ACYL-COA OXIDASE 3, ATACX3  gene ACX3  function Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids.  go_component peroxisome|GO:0005777||IEA  go_component peroxisome|GO:0005777||ISS  go_process fatty acid beta-oxidation|GO:0006635|15743450|TAS  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_process medium-chain fatty acid metabolic process|GO:0051791|15743450|TAS  go_function acyl-CoA oxidase activity|GO:0003997|15743450|TAS  go_function acyl-CoA oxidase activity|GO:0003997||ISS  product ACX3 (ACYL-COA OXIDASE 3); acyl-CoA oxidase  note ACYL-COA OXIDASE 3 (ACX3); FUNCTIONS IN: acyl-CoA oxidase activity; INVOLVED IN: medium-chain fatty acid metabolic process, fatty acid beta-oxidation; LOCATED IN: peroxisome; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: ACX6 (ACYL-COA OXIDASE 6); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G06310.1); Has 7915 Blast hits to 7911 proteins in 806 species: Archae - 97; Bacteria - 4438; Metazoa - 1362; Fungi - 388; Plants - 177; Viruses - 0; Other Eukaryotes - 1453 (source: NCBI BLink).  protein_id AT1G06290.1p  transcript_id AT1G06290.1  protein_id AT1G06290.1p  transcript_id AT1G06290.1  
At1g06310	chr1:001926802	0.0	W/1926802-1927271,1927360-1927477,1927555-1927662,1927737-1927909,1927995-1928094,1928178-1928252,1928363-1928493,1928735-1928870,1928959-1929078,1929162-1929308,1929392-1929496,1929581-1929682,1929985-1930227	AT1G06310.1 CDS  gene_syn ACX6, ACYL-COA OXIDASE 6, T2D23.2, T2D23_2  gene ACX6  function Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo.  go_component peroxisome|GO:0005777||IEA  go_process fatty acid metabolic process|GO:0006631||IEA  go_process fatty acid beta-oxidation|GO:0006635||IEA  go_process metabolic process|GO:0008152||IEA  go_function acyl-CoA dehydrogenase activity|GO:0003995||IEA  go_function acyl-CoA oxidase activity|GO:0003997||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  go_function FAD binding|GO:0050660||IEA  go_component peroxisome|GO:0005777||ISS  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_function acyl-CoA oxidase activity|GO:0003997||ISS  product ACX6 (ACYL-COA OXIDASE 6); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors  note ACYL-COA OXIDASE 6 (ACX6); FUNCTIONS IN: in 6 functions; INVOLVED IN: fatty acid beta-oxidation, fatty acid metabolic process, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase, central region (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: ACX3 (ACYL-COA OXIDASE 3); acyl-CoA oxidase (TAIR:AT1G06290.1); Has 6970 Blast hits to 6967 proteins in 774 species: Archae - 100; Bacteria - 3926; Metazoa - 1281; Fungi - 369; Plants - 158; Viruses - 0; Other Eukaryotes - 1136 (source: NCBI BLink).  protein_id AT1G06310.1p  transcript_id AT1G06310.1  protein_id AT1G06310.1p  transcript_id AT1G06310.1  
At1g06320	chr1:001930602	0.0	W/1930602-1930700,1930791-1930835,1931006-1931449	AT1G06320.1 CDS  gene_syn T2D23.15, T2D23_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G06320.1p  transcript_id AT1G06320.1  protein_id AT1G06320.1p  transcript_id AT1G06320.1  
At1g06330	chr1:001931671	0.0	C/1931671-1932041,1932158-1932266	AT1G06330.1 CDS  gene_syn T2D23.3, T2D23_3  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: copper-binding family protein (TAIR:AT1G29100.1); Has 790 Blast hits to 758 proteins in 80 species: Archae - 0; Bacteria - 61; Metazoa - 26; Fungi - 8; Plants - 695; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06330.1p  transcript_id AT1G06330.1  protein_id AT1G06330.1p  transcript_id AT1G06330.1  
At1g06340	chr1:001933583	0.0	C/1933583-1933987	AT1G06340.1 CDS  gene_syn T2D23.4, T2D23_4  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 146 Blast hits to 120 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G06340.1p  transcript_id AT1G06340.1  protein_id AT1G06340.1p  transcript_id AT1G06340.1  
At1g06350	chr1:001935510	0.0	C/1935510-1935708,1935799-1935905,1936004-1936144,1936228-1936368,1936475-1936789	AT1G06350.1 CDS  gene_syn T2D23.5, T2D23_5  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product fatty acid desaturase family protein  note fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase family protein (TAIR:AT1G06360.1); Has 2719 Blast hits to 2719 proteins in 596 species: Archae - 0; Bacteria - 1082; Metazoa - 696; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 715 (source: NCBI BLink).  protein_id AT1G06350.1p  transcript_id AT1G06350.1  protein_id AT1G06350.1p  transcript_id AT1G06350.1  
At1g06360	chr1:001939173	0.0	C/1939173-1939371,1939464-1939570,1939658-1939798,1939874-1940014,1940106-1940417	AT1G06360.1 CDS  gene_syn T2D23.6, T2D23_6  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product fatty acid desaturase family protein  note fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase family protein (TAIR:AT1G06350.1); Has 2722 Blast hits to 2722 proteins in 596 species: Archae - 0; Bacteria - 1082; Metazoa - 698; Fungi - 152; Plants - 71; Viruses - 3; Other Eukaryotes - 716 (source: NCBI BLink).  protein_id AT1G06360.1p  transcript_id AT1G06360.1  protein_id AT1G06360.1p  transcript_id AT1G06360.1  
At1g06370	chr1:001942843	0.0	C/1942843-1944934	AT1G06370.1 pseudogenic_transcript  pseudo  gene_syn T2D23.14  note pseudogene, similar to putative glycolipid alpha-mannosyltransferase, blastp match of 41% identity and 9.6e-10 P-value to GP|13161358|dbj|BAB32949.1||AP002908 putative glycolipid alpha-mannosyltransferase {Oryza sativa (japonica cultivar-group)}  
At1g06380	chr1:001945124	0.0	W/1945124-1945888	AT1G06380.1 CDS  gene_syn T2D23.8, T2D23_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  product ribosomal protein-related  note ribosomal protein-related; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein-related (TAIR:AT2G42650.1); Has 757 Blast hits to 757 proteins in 209 species: Archae - 3; Bacteria - 0; Metazoa - 338; Fungi - 175; Plants - 144; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G06380.1p  transcript_id AT1G06380.1  protein_id AT1G06380.1p  transcript_id AT1G06380.1  
At1g06390	chr1:001946860	0.0	W/1946860-1946964,1948123-1948215,1948429-1948488,1948574-1948846,1948936-1949010,1949085-1949141,1949315-1949455,1949567-1949617,1949725-1949820,1949938-1950021,1950149-1950250,1950331-1950417	AT1G06390.1 CDS  gene_syn ATGSK1, ATSK22, GSK1, GSK3/SHAGGY-LIKE PROTEIN KINASE, GSK3/SHAGGY-LIKE PROTEIN KINASE 1, SHAGGY-LIKE PROTEIN KINASE 22, SK22, T2D23.9, T2D23_9  gene GSK1  function encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468|17873094|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17873094|IPI  go_process regulation of protein localization|GO:0032880|17873094|IDA  go_process hyperosmotic salinity response|GO:0042538|11532176|IMP  go_function glycogen synthase kinase 3 activity|GO:0004696|10198112|ISS  go_function kinase activity|GO:0016301||ISS  product GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); glycogen synthase kinase 3/ kinase  note GSK3/SHAGGY-LIKE PROTEIN KINASE 1 (GSK1); FUNCTIONS IN: kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: brassinosteroid mediated signaling, hyperosmotic salinity response, protein amino acid phosphorylation, regulation of protein localization; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G30980.1); Has 78701 Blast hits to 77721 proteins in 2460 species: Archae - 32; Bacteria - 6039; Metazoa - 32902; Fungi - 7866; Plants - 16105; Viruses - 349; Other Eukaryotes - 15408 (source: NCBI BLink).  protein_id AT1G06390.1p  transcript_id AT1G06390.1  protein_id AT1G06390.1p  transcript_id AT1G06390.1  
At1g06390	chr1:001946860	0.0	W/1946860-1946964,1948123-1948215,1948429-1948488,1948574-1948846,1948936-1949010,1949085-1949141,1949315-1949455,1949567-1949617,1949725-1949820,1949938-1950021,1950149-1950250,1950331-1950417	AT1G06390.2 CDS  gene_syn ATGSK1, ATSK22, GSK1, GSK3/SHAGGY-LIKE PROTEIN KINASE, GSK3/SHAGGY-LIKE PROTEIN KINASE 1, SHAGGY-LIKE PROTEIN KINASE 22, SK22, T2D23.9, T2D23_9  gene GSK1  function encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468|17873094|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17873094|IPI  go_process regulation of protein localization|GO:0032880|17873094|IDA  go_process hyperosmotic salinity response|GO:0042538|11532176|IMP  go_function glycogen synthase kinase 3 activity|GO:0004696|10198112|ISS  go_function kinase activity|GO:0016301||ISS  product GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); glycogen synthase kinase 3/ kinase  note GSK3/SHAGGY-LIKE PROTEIN KINASE 1 (GSK1); FUNCTIONS IN: kinase activity, glycogen synthase kinase 3 activity; INVOLVED IN: brassinosteroid mediated signaling, hyperosmotic salinity response, protein amino acid phosphorylation, regulation of protein localization; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G30980.1); Has 78701 Blast hits to 77721 proteins in 2460 species: Archae - 32; Bacteria - 6039; Metazoa - 32902; Fungi - 7866; Plants - 16105; Viruses - 349; Other Eukaryotes - 15408 (source: NCBI BLink).  protein_id AT1G06390.2p  transcript_id AT1G06390.2  protein_id AT1G06390.2p  transcript_id AT1G06390.2  
At1g06400	chr1:001951089	0.0	C/1951089-1951518,1952466-1952686	AT1G06400.1 CDS  gene_syn ARA-2, ARA2, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, ATRAB11E, ATRABA1A, SMALL GTP-BINDING PROTEIN, T2D23.10, T2D23_10  gene ARA-2  function small GTP-binding protein (ara-2)  go_component plasma membrane|GO:0005886|17317660|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525|1748311|ISS  go_function GTP binding|GO:0005525||ISS  product ARA-2; GTP binding  note ARA-2; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding (TAIR:AT5G45750.1); Has 21338 Blast hits to 21300 proteins in 606 species: Archae - 21; Bacteria - 104; Metazoa - 11930; Fungi - 2463; Plants - 1870; Viruses - 19; Other Eukaryotes - 4931 (source: NCBI BLink).  protein_id AT1G06400.1p  transcript_id AT1G06400.1  protein_id AT1G06400.1p  transcript_id AT1G06400.1  
At1g06410	chr1:001955413	0.0	W/1955413-1957382,1957477-1957750,1957842-1958153	AT1G06410.1 CDS  gene_syn ARABIDOPSIS THALIANA TREHALOSE-PHOSPHATASE/SYNTHASE 7, ATTPS7, ATTPSA, T2D23.11, T2D23_11, TPS7, TREHALOSE -6-PHOSPHATASE SYNTHASE S7  gene ATTPS7  function Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11520870|IGI  go_function trehalose-phosphatase activity|GO:0004805|11520870|IGI  go_function trehalose-phosphatase activity|GO:0004805||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS7; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups / trehalose-phosphatase  note ATTPS7; FUNCTIONS IN: transferase activity, transferring glycosyl groups, alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS5; protein binding / transferase, transferring glycosyl groups / trehalose-phosphatase (TAIR:AT4G17770.1); Has 2769 Blast hits to 2719 proteins in 619 species: Archae - 36; Bacteria - 1380; Metazoa - 130; Fungi - 472; Plants - 344; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT1G06410.1p  transcript_id AT1G06410.1  protein_id AT1G06410.1p  transcript_id AT1G06410.1  
At1g06420	chr1:001958987	0.0	W/1958987-1959652	AT1G06420.1 CDS  gene_syn T2D23.12, T2D23_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 1024 Blast hits to 647 proteins in 104 species: Archae - 0; Bacteria - 29; Metazoa - 257; Fungi - 71; Plants - 30; Viruses - 0; Other Eukaryotes - 637 (source: NCBI BLink).  protein_id AT1G06420.1p  transcript_id AT1G06420.1  protein_id AT1G06420.1p  transcript_id AT1G06420.1  
At1g06430	chr1:001960214	0.0	C/1960214-1960564,1960655-1960895,1960970-1961283,1961374-1962525	AT1G06430.1 CDS  gene_syn FTSH PROTEASE 8, FTSH8  gene FTSH8  function encodes a FtsH protease that is localized to the chloroplast  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|14630971|IDA  go_process PSII associated light-harvesting complex II catabolic process|GO:0010304|16157880|TAS  go_function ATP-dependent peptidase activity|GO:0004176|11299370|ISS  go_function metallopeptidase activity|GO:0008237||ISS  go_function zinc ion binding|GO:0008270||ISS  go_function ATPase activity|GO:0016887||ISS  product FTSH8; ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding  note FTSH8; FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding (TAIR:AT2G30950.1); Has 28831 Blast hits to 27221 proteins in 1868 species: Archae - 926; Bacteria - 9494; Metazoa - 4159; Fungi - 2505; Plants - 1781; Viruses - 23; Other Eukaryotes - 9943 (source: NCBI BLink).  protein_id AT1G06430.1p  transcript_id AT1G06430.1  protein_id AT1G06430.1p  transcript_id AT1G06430.1  
At1g06440	chr1:001963733	0.0	C/1963733-1964905	AT1G06440.1 CDS  gene_syn F12K11.21, F12K11_21  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin thiolesterase activity|GO:0004221||IEA  product ubiquitin thiolesterase  note ubiquitin thiolesterase; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: shoot apex, root; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578); BEST Arabidopsis thaliana protein match is: RPD1 (ROOT PRIMORDIUM DEFECTIVE 1); ubiquitin thiolesterase (TAIR:AT4G33495.1); Has 215 Blast hits to 215 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G06440.1p  transcript_id AT1G06440.1  protein_id AT1G06440.1p  transcript_id AT1G06440.1  
At1g06450	chr1:001965924	0.0	W/1965924-1967006	AT1G06450.1 CDS  gene_syn F12K11.20, F12K11_20  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT3G44240.1); Has 612 Blast hits to 611 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 93; Plants - 206; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G06450.1p  transcript_id AT1G06450.1  protein_id AT1G06450.1p  transcript_id AT1G06450.1  
At1g06460	chr1:001967308	0.0	C/1967308-1967344,1967603-1967767,1967864-1967978,1968226-1968421,1968512-1968628,1968784-1968906,1969310-1969414	AT1G06460.1 CDS  gene_syn ACD31.2, ACD32.1, ALPHA-CRYSTALLIN DOMAIN 31.2, ALPHA-CRYSTALLIN DOMAIN 32.1, F12K11.19, F12K11_19  gene ACD32.1  function ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins.  go_component peroxisome|GO:0005777|17951448|IDA  go_process response to heat|GO:0009408||ISS  product ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 32.1)  note ALPHA-CRYSTALLIN DOMAIN 32.1 (ACD32.1); INVOLVED IN: response to heat; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A); unfolded protein binding (TAIR:AT5G12030.1); Has 2313 Blast hits to 2313 proteins in 606 species: Archae - 19; Bacteria - 1346; Metazoa - 0; Fungi - 119; Plants - 506; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).  protein_id AT1G06460.1p  transcript_id AT1G06460.1  protein_id AT1G06460.1p  transcript_id AT1G06460.1  
At1g06470	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.1 CDS  gene_syn F12K11.18, F12K11_18  go_component membrane|GO:0016020|11152613|ISS  product phosphate translocator-related  note phosphate translocator-related; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT5G25400.1); Has 1538 Blast hits to 1535 proteins in 209 species: Archae - 2; Bacteria - 63; Metazoa - 491; Fungi - 247; Plants - 571; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT1G06470.1p  transcript_id AT1G06470.1  protein_id AT1G06470.1p  transcript_id AT1G06470.1  
At1g06470	chr1:001970726	0.0	W/1970726-1970997,1971083-1971252,1971478-1971563,1971672-1971721,1971823-1971890,1972031-1972131,1972267-1972279,1972388-1972572,1972711-1972797,1973223-1973317,1973423-1973540	AT1G06470.2 CDS  gene_syn F12K11.18, F12K11_18  go_component membrane|GO:0016020|11152613|ISS  product phosphate translocator-related  note phosphate translocator-related; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphate translocator-related (TAIR:AT5G25400.1); Has 1538 Blast hits to 1535 proteins in 209 species: Archae - 2; Bacteria - 63; Metazoa - 491; Fungi - 247; Plants - 571; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT1G06470.2p  transcript_id AT1G06470.2  protein_id AT1G06470.2p  transcript_id AT1G06470.2  
At1g06475	chr1:001973992	0.0	C/1973992-1974273	AT1G06475.1 CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; Has 19 Blast hits to 19 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06475.1p  transcript_id AT1G06475.1  protein_id AT1G06475.1p  transcript_id AT1G06475.1  
At1g06480	chr1:001978084	0.0	W/1978084-1978157	AT1G06480.1 tRNA  gene_syn 51438.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT1G06480.1  
At1g06490	chr1:001978762	0.0	W/1978762-1978996,1979085-1979185,1979322-1979434,1979531-1979618,1979708-1979818,1979898-1980050,1980146-1980235,1980312-1980403,1980528-1980651,1980812-1980946,1981033-1981109,1981190-1981280,1981454-1981576,1981659-1981776,1981858-1982242,1982478-1982538,1982763-1982844,1982926-1982975,1983046-1983132,1983257-1983361,1983454-1983548,1983648-1983729,1983814-1983977,1984079-1984202,1984307-1984407,1984559-1984670,1984750-1984901,1985074-1985183,1985260-1985379,1985459-1985527,1985689-1985878,1985959-1986070,1986231-1986353,1986428-1986546,1986644-1986727,1986914-1987026,1987105-1987334,1987436-1988233,1988320-1988370,1988525-1988710,1988801-1989046	AT1G06490.1 CDS  gene_syn ATGSL07, F12K11.17, F12K11_17, atgsl7, glucan synthase-like 7, gsl07  gene ATGSL07  function encodes a gene similar to callose synthase  go_component 1,3-beta-glucan synthase complex|GO:0000148||IEA  go_component membrane|GO:0016020||IEA  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||IEA  go_component 1,3-beta-glucan synthase complex|GO:0000148||ISS  go_process 1,3-beta-glucan biosynthetic process|GO:0006075||ISS  go_function 1,3-beta-glucan synthase activity|GO:0003843||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATGSL07 (glucan synthase-like 7); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups  note glucan synthase-like 7 (ATGSL07); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: ATGSL11 (glucan synthase-like 11); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups (TAIR:AT3G59100.1); Has 839 Blast hits to 599 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 546; Plants - 258; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G06490.1p  transcript_id AT1G06490.1  protein_id AT1G06490.1p  transcript_id AT1G06490.1  
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.1 CDS  gene_syn F12K11.25, F12K11_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06500.1p  transcript_id AT1G06500.1  protein_id AT1G06500.1p  transcript_id AT1G06500.1  
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.2 CDS  gene_syn F12K11.25, F12K11_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06500.2p  transcript_id AT1G06500.2  protein_id AT1G06500.2p  transcript_id AT1G06500.2  
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.3 CDS  gene_syn F12K11.25, F12K11_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06500.3p  transcript_id AT1G06500.3  protein_id AT1G06500.3p  transcript_id AT1G06500.3  
At1g06500	chr1:001990176	0.0	W/1990176-1990586	AT1G06500.4 CDS  gene_syn F12K11.25, F12K11_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06500.4p  transcript_id AT1G06500.4  protein_id AT1G06500.4p  transcript_id AT1G06500.4  
At1g06515	chr1:001990951	0.0	C/1990951-1990963,1991443-1991515,1991884-1991968	AT1G06515.1 CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30942.1); Has 42 Blast hits to 42 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06515.1p  transcript_id AT1G06515.1  protein_id AT1G06515.1p  transcript_id AT1G06515.1  
At1g06510	chr1:001992389	0.0	W/1992389-1992545,1992707-1992906,1993024-1993460,1993544-1993583	AT1G06510.1 CDS  gene_syn F12K11.16, F12K11_16  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 293 Blast hits to 288 proteins in 116 species: Archae - 4; Bacteria - 87; Metazoa - 85; Fungi - 34; Plants - 11; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G06510.1p  transcript_id AT1G06510.1  protein_id AT1G06510.1p  transcript_id AT1G06510.1  
At1g06520	chr1:001994170	0.0	C/1994170-1995039,1995180-1996067	AT1G06520.1 CDS  gene_syn ATGPAT1, F12K11.15, F12K11_15, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1, GPAT1  gene GPAT1  function Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.  go_component mitochondrion|GO:0005739|12897259|IDA  go_component membrane|GO:0016020|12897259|IDA  go_process metabolic process|GO:0008152||ISS  go_process pollen sperm cell differentiation|GO:0048235|12897259|IMP  go_function 1-acylglycerol-3-phosphate O-acyltransferase activity|GO:0003841|12897259|IGI  go_function acyltransferase activity|GO:0008415||ISS  product GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase  note GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1 (GPAT1); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: pollen sperm cell differentiation, metabolic process; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2); acyltransferase (TAIR:AT1G02390.1); Has 193 Blast hits to 188 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G06520.1p  transcript_id AT1G06520.1  protein_id AT1G06520.1p  transcript_id AT1G06520.1  
At1g06530	chr1:002001625	0.0	W/2001625-2002596	AT1G06530.1 CDS  gene_syn F12K11.14, F12K11_14  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  product myosin heavy chain-related  note myosin heavy chain-related; LOCATED IN: mitochondrion, plasma membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58840.2); Has 115779 Blast hits to 52346 proteins in 2082 species: Archae - 1688; Bacteria - 13782; Metazoa - 57957; Fungi - 9395; Plants - 4647; Viruses - 508; Other Eukaryotes - 27802 (source: NCBI BLink).  protein_id AT1G06530.1p  transcript_id AT1G06530.1  protein_id AT1G06530.1p  transcript_id AT1G06530.1  
At1g06540	chr1:002002908	0.0	C/2002908-2003003,2003112-2003393	AT1G06540.1 CDS  gene_syn F12K11.13, F12K11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, sepal, flower, carpel, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30930.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06540.1p  transcript_id AT1G06540.1  protein_id AT1G06540.1p  transcript_id AT1G06540.1  
At1g06550	chr1:002003834	0.0	C/2003834-2003882,2003988-2004097,2004193-2004234,2004350-2004451,2004688-2004786,2004867-2004927,2005049-2005170,2005386-2005471,2005550-2005634,2005724-2005807,2005887-2005960,2006053-2006116,2006196-2006264,2006351-2006434,2006532-2006564	AT1G06550.1 CDS  gene_syn F12K11.12, F12K11_12  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process fatty acid beta-oxidation|GO:0006635||ISS  go_function 3-hydroxyisobutyryl-CoA hydrolase activity|GO:0003860||ISS  product enoyl-CoA hydratase/isomerase family protein  note enoyl-CoA hydratase/isomerase family protein; FUNCTIONS IN: 3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity; INVOLVED IN: fatty acid beta-oxidation, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase (TAIR:AT5G65940.1); Has 18301 Blast hits to 18297 proteins in 1228 species: Archae - 169; Bacteria - 10699; Metazoa - 998; Fungi - 428; Plants - 255; Viruses - 0; Other Eukaryotes - 5752 (source: NCBI BLink).  protein_id AT1G06550.1p  transcript_id AT1G06550.1  protein_id AT1G06550.1p  transcript_id AT1G06550.1  
At1g06560	chr1:002007660	0.0	W/2007660-2007898,2008186-2008474,2008723-2008870,2009261-2009398,2009497-2009559,2009726-2009847,2010017-2010248,2010559-2010770,2011087-2011187,2011354-2011435,2011539-2011600,2011713-2011824	AT1G06560.1 CDS  gene_syn F12K11.10, F12K11_10  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product NOL1/NOP2/sun family protein  note NOL1/NOP2/sun family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), PUA-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), PUA (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: nucleolar protein, putative (TAIR:AT4G26600.1); Has 7921 Blast hits to 5034 proteins in 1248 species: Archae - 364; Bacteria - 5099; Metazoa - 733; Fungi - 277; Plants - 171; Viruses - 0; Other Eukaryotes - 1277 (source: NCBI BLink).  protein_id AT1G06560.1p  transcript_id AT1G06560.1  protein_id AT1G06560.1p  transcript_id AT1G06560.1  
At1g06570	chr1:002012015	0.0	C/2012015-2012189,2012297-2013543	AT1G06570.1 CDS  gene_syn 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE, F12K11.9, F12K11_9, HPD, P-HYDROXYPHENYLPYRUVATE DIOXYGENASE, PDS1, PHYTOENE DESATURATION 1  gene PDS1  function Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|10198110|IDA  go_component chloroplast|GO:0009507|8718624|NAS  go_process vitamin E biosynthetic process|GO:0010189|8718624|IMP  go_process plastoquinone biosynthetic process|GO:0010236|8718624|IMP  go_process carotenoid biosynthetic process|GO:0016117|8718624|IMP  go_function 4-hydroxyphenylpyruvate dioxygenase activity|GO:0003868|9701587|IDA  product PDS1 (PHYTOENE DESATURATION 1); 4-hydroxyphenylpyruvate dioxygenase  note PHYTOENE DESATURATION 1 (PDS1); FUNCTIONS IN: 4-hydroxyphenylpyruvate dioxygenase activity; INVOLVED IN: carotenoid biosynthetic process, plastoquinone biosynthetic process, vitamin E biosynthetic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 1641 Blast hits to 1641 proteins in 517 species: Archae - 2; Bacteria - 1029; Metazoa - 183; Fungi - 110; Plants - 55; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT1G06570.1p  transcript_id AT1G06570.1  protein_id AT1G06570.1p  transcript_id AT1G06570.1  
At1g06570	chr1:002012173	0.0	C/2012173-2012189,2012304-2013543	AT1G06570.2 CDS  gene_syn 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE, F12K11.9, F12K11_9, HPD, P-HYDROXYPHENYLPYRUVATE DIOXYGENASE, PDS1, PHYTOENE DESATURATION 1  gene PDS1  function Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|10198110|IDA  go_component chloroplast|GO:0009507|8718624|NAS  go_process vitamin E biosynthetic process|GO:0010189|8718624|IMP  go_process plastoquinone biosynthetic process|GO:0010236|8718624|IMP  go_process carotenoid biosynthetic process|GO:0016117|8718624|IMP  go_function 4-hydroxyphenylpyruvate dioxygenase activity|GO:0003868|9701587|IDA  product PDS1 (PHYTOENE DESATURATION 1); 4-hydroxyphenylpyruvate dioxygenase  note PHYTOENE DESATURATION 1 (PDS1); FUNCTIONS IN: 4-hydroxyphenylpyruvate dioxygenase activity; INVOLVED IN: carotenoid biosynthetic process, plastoquinone biosynthetic process, vitamin E biosynthetic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360).  protein_id AT1G06570.2p  transcript_id AT1G06570.2  protein_id AT1G06570.2p  transcript_id AT1G06570.2  
At1g06580	chr1:002014440	0.0	C/2014440-2015942	AT1G06580.1 CDS  gene_syn F12K11.8, F12K11_8  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: stem, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G64580.1); Has 24093 Blast hits to 5935 proteins in 175 species: Archae - 4; Bacteria - 16; Metazoa - 695; Fungi - 411; Plants - 21894; Viruses - 0; Other Eukaryotes - 1073 (source: NCBI BLink).  protein_id AT1G06580.1p  transcript_id AT1G06580.1  protein_id AT1G06580.1p  transcript_id AT1G06580.1  
At1g06590	chr1:002016504	0.0	C/2016504-2016656,2016929-2016996,2017124-2017388,2017690-2017788,2017911-2018052,2018241-2018346,2018652-2018719,2018871-2018930,2019683-2019945,2020029-2020106,2020749-2020997,2021373-2021405,2021777-2021906,2022094-2022179,2022278-2022362,2022453-2022630,2023050-2023284,2023656-2023777,2023863-2024022,2024335-2024505	AT1G06590.1 CDS  gene_syn F12K11.7, F12K11_7  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 297 Blast hits to 208 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 51; Plants - 21; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G06590.1p  transcript_id AT1G06590.1  protein_id AT1G06590.1p  transcript_id AT1G06590.1  
At1g06610	chr1:002025356	0.0	W/2025356-2025428	AT1G06610.1 tRNA  gene_syn 51438.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT1G06610.1  
At1g06620	chr1:002025618	0.0	W/2025618-2026141,2026434-2026755,2026843-2027094	AT1G06620.1 CDS  gene_syn F12K11.24, F12K11_24  function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT3G61400.1); Has 5741 Blast hits to 5720 proteins in 691 species: Archae - 0; Bacteria - 728; Metazoa - 128; Fungi - 561; Plants - 3076; Viruses - 0; Other Eukaryotes - 1248 (source: NCBI BLink).  protein_id AT1G06620.1p  transcript_id AT1G06620.1  protein_id AT1G06620.1p  transcript_id AT1G06620.1  
At1g06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029376,2030003-2030207,2030310-2030344	AT1G06630.3 CDS  gene_syn F12K11.23, F12K11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1).  protein_id AT1G06630.3p  transcript_id AT1G06630.3  protein_id AT1G06630.3p  transcript_id AT1G06630.3  
At1g06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029376,2030003-2030207,2031091-2031173	AT1G06630.1 CDS  gene_syn F12K11.23, F12K11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1188 Blast hits to 1155 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1187; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G06630.1p  transcript_id AT1G06630.1  protein_id AT1G06630.1p  transcript_id AT1G06630.1  
At1g06630	chr1:002028071	0.0	W/2028071-2028976,2029050-2029199,2029287-2029442	AT1G06630.2 CDS  gene_syn F12K11.23, F12K11_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1).  protein_id AT1G06630.2p  transcript_id AT1G06630.2  protein_id AT1G06630.2p  transcript_id AT1G06630.2  
At1g06640	chr1:002032366	0.0	W/2032366-2032898,2033070-2033385,2033516-2033527	AT1G06640.3 CDS  gene_syn F12K11.27, F12K11_27  function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06650.2).  protein_id AT1G06640.3p  transcript_id AT1G06640.3  protein_id AT1G06640.3p  transcript_id AT1G06640.3  
At1g06640	chr1:002032366	0.0	W/2032366-2032898,2033070-2033391,2033521-2033775	AT1G06640.1 CDS  gene_syn F12K11.27, F12K11_27  function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06650.2); Has 5603 Blast hits to 5588 proteins in 675 species: Archae - 0; Bacteria - 695; Metazoa - 120; Fungi - 485; Plants - 3058; Viruses - 0; Other Eukaryotes - 1245 (source: NCBI BLink).  protein_id AT1G06640.1p  transcript_id AT1G06640.1  protein_id AT1G06640.1p  transcript_id AT1G06640.1  
At1g06640	chr1:002032366	0.0	W/2032366-2032898,2033070-2033505	AT1G06640.2 CDS  gene_syn F12K11.27, F12K11_27  function encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06650.2); Has 4655 Blast hits to 4643 proteins in 620 species: Archae - 0; Bacteria - 609; Metazoa - 90; Fungi - 325; Plants - 2905; Viruses - 0; Other Eukaryotes - 726 (source: NCBI BLink).  protein_id AT1G06640.2p  transcript_id AT1G06640.2  protein_id AT1G06640.2p  transcript_id AT1G06640.2  
At1g06645	chr1:002034229	0.0	W/2034229-2034752,2034824-2035145,2035245-2035499	AT1G06645.1 CDS  gene_syn F12K11.6  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06650.2).  protein_id AT1G06645.1p  transcript_id AT1G06645.1  protein_id AT1G06645.1p  transcript_id AT1G06645.1  
At1g06650	chr1:002035909	0.0	W/2035909-2036441,2036520-2036841,2036932-2037186	AT1G06650.2 CDS  gene_syn F12K11.26, F12K11_26  function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06640.1); Has 5656 Blast hits to 5644 proteins in 679 species: Archae - 0; Bacteria - 695; Metazoa - 122; Fungi - 527; Plants - 3059; Viruses - 0; Other Eukaryotes - 1253 (source: NCBI BLink).  protein_id AT1G06650.2p  transcript_id AT1G06650.2  protein_id AT1G06650.2p  transcript_id AT1G06650.2  
At1g06650	chr1:002035909	0.0	W/2035909-2036441,2036520-2036841,2036958-2037047	AT1G06650.1 CDS  gene_syn F12K11.26, F12K11_26  function encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G06640.2); Has 4995 Blast hits to 4984 proteins in 635 species: Archae - 0; Bacteria - 632; Metazoa - 90; Fungi - 351; Plants - 2942; Viruses - 0; Other Eukaryotes - 980 (source: NCBI BLink).  protein_id AT1G06650.1p  transcript_id AT1G06650.1  protein_id AT1G06650.1p  transcript_id AT1G06650.1  
At1g06660	chr1:002037461	0.0	C/2037461-2037554,2037639-2037730,2037809-2038544,2038723-2038943,2039500-2039582,2039687-2039735,2039978-2040148	AT1G06660.1 CDS  gene_syn F12K11.5, F12K11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 131 Blast hits to 108 proteins in 29 species: Archae - 0; Bacteria - 17; Metazoa - 22; Fungi - 20; Plants - 60; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G06660.1p  transcript_id AT1G06660.1  protein_id AT1G06660.1p  transcript_id AT1G06660.1  
At1g06670	chr1:002040567	0.0	W/2040567-2040669,2040881-2040971,2041075-2041507,2041630-2041704,2041838-2041882,2042220-2042313,2042424-2042482,2042581-2042706,2042962-2043014,2043280-2043313,2043396-2043485,2043590-2044576,2044707-2045786,2045873-2047333	AT1G06670.1 CDS  gene_syn DEIH-BOX RNA/DNA HELICASE, F12K11.4, F12K11_4, NIH, NUCLEAR DEIH-BOXHELICASE  gene NIH  function nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins  go_component nucleus|GO:0005634|10471743|IDA  go_process DNA metabolic process|GO:0006259|10471743|ISS  go_function DNA binding|GO:0003677|10471743|IDA  go_function DNA helicase activity|GO:0003678|10471743|ISS  product NIH (NUCLEAR DEIH-BOXHELICASE); DNA binding / DNA helicase  note NUCLEAR DEIH-BOXHELICASE (NIH); FUNCTIONS IN: DNA helicase activity, DNA binding; INVOLVED IN: DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Region of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM); ATP binding / helicase/ nucleic acid binding (TAIR:AT2G30800.1); Has 20232 Blast hits to 12558 proteins in 1124 species: Archae - 10; Bacteria - 4348; Metazoa - 5452; Fungi - 2011; Plants - 697; Viruses - 268; Other Eukaryotes - 7446 (source: NCBI BLink).  protein_id AT1G06670.1p  transcript_id AT1G06670.1  protein_id AT1G06670.1p  transcript_id AT1G06670.1  
At1g06680	chr1:002047940	0.0	W/2047940-2048186,2048297-2048529,2048620-2048670,2048926-2049186	AT1G06680.1 CDS  gene_syn F12K11.3, F12K11_3, OE23, OEE2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, OXYGEN-EVOLVING ENHANCER PROTEIN 2, PHOTOSYSTEM II SUBUNIT P, PHOTOSYSTEM II SUBUNIT P-1, PSBP-1, PSII-P  gene PSBP-1  function Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid|GO:0009534|11526245|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_component oxygen evolving complex|GO:0009654||ISS  go_component extrinsic to membrane|GO:0019898|11719511|TAS  go_component chloroplast photosystem II|GO:0030095||ISS  go_process response to light intensity|GO:0009642|16282331|IEP  go_process photosynthesis, light reaction|GO:0019684|9039496|TAS  go_function poly(U) binding|GO:0008266|17511964|IDA  product PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding  note PHOTOSYSTEM II SUBUNIT P-1 (PSBP-1); FUNCTIONS IN: poly(U) binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 12 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123), Twin-arginine translocation pathway signal (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: PSBP-2 (photosystem II subunit P-2); calcium ion binding (TAIR:AT2G30790.1); Has 210 Blast hits to 210 proteins in 63 species: Archae - 0; Bacteria - 40; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G06680.1p  transcript_id AT1G06680.1  protein_id AT1G06680.1p  transcript_id AT1G06680.1  
At1g06680	chr1:002048076	0.0	W/2048076-2048190,2048297-2048529,2048620-2048670,2048926-2049186	AT1G06680.2 CDS  gene_syn F12K11.3, F12K11_3, OE23, OEE2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, OXYGEN-EVOLVING ENHANCER PROTEIN 2, PHOTOSYSTEM II SUBUNIT P, PHOTOSYSTEM II SUBUNIT P-1, PSBP-1, PSII-P  gene PSBP-1  function Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid|GO:0009534|11526245|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_component oxygen evolving complex|GO:0009654||ISS  go_component extrinsic to membrane|GO:0019898|11719511|TAS  go_component chloroplast photosystem II|GO:0030095||ISS  go_process response to light intensity|GO:0009642|16282331|IEP  go_process photosynthesis, light reaction|GO:0019684|9039496|TAS  go_function poly(U) binding|GO:0008266|17511964|IDA  product PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding  note PHOTOSYSTEM II SUBUNIT P-1 (PSBP-1); FUNCTIONS IN: poly(U) binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PSBP-2 (photosystem II subunit P-2); calcium ion binding (TAIR:AT2G30790.1); Has 201 Blast hits to 201 proteins in 62 species: Archae - 0; Bacteria - 40; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G06680.2p  transcript_id AT1G06680.2  protein_id AT1G06680.2p  transcript_id AT1G06680.2  
At1g06690	chr1:002049742	0.0	C/2049742-2049927,2050096-2050158,2050474-2050556,2050703-2050870,2050960-2051031,2051132-2051154,2051232-2051396,2051484-2051524,2051602-2051693,2051799-2052039	AT1G06690.1 CDS  gene_syn F12K11.2, F12K11_2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function ATP binding|GO:0005524||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function ATPase activity|GO:0016887||IEA  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity, ATPase activity, ATP binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase, conserved site (InterPro:IPR018170), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT5G53580.1); Has 18029 Blast hits to 18016 proteins in 1454 species: Archae - 258; Bacteria - 9842; Metazoa - 1647; Fungi - 1390; Plants - 743; Viruses - 0; Other Eukaryotes - 4149 (source: NCBI BLink).  protein_id AT1G06690.1p  transcript_id AT1G06690.1  protein_id AT1G06690.1p  transcript_id AT1G06690.1  
At1g06700	chr1:002052750	0.0	C/2052750-2052875,2052986-2053072,2053158-2053290,2053375-2053648,2053786-2053912,2053995-2054248,2054468-2054552	AT1G06700.1 CDS  gene_syn F4H5.21, F4H5_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT2G30740.1); Has 80916 Blast hits to 79948 proteins in 3116 species: Archae - 48; Bacteria - 7582; Metazoa - 35663; Fungi - 6087; Plants - 17766; Viruses - 321; Other Eukaryotes - 13449 (source: NCBI BLink).  protein_id AT1G06700.1p  transcript_id AT1G06700.1  protein_id AT1G06700.1p  transcript_id AT1G06700.1  
At1g06700	chr1:002052750	0.0	C/2052750-2052875,2052986-2053072,2053158-2053290,2053375-2053648,2053786-2053912,2053995-2054248,2054468-2054552	AT1G06700.2 CDS  gene_syn F4H5.21, F4H5_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product serine/threonine protein kinase, putative  note serine/threonine protein kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT2G30740.1); Has 80916 Blast hits to 79948 proteins in 3116 species: Archae - 48; Bacteria - 7582; Metazoa - 35663; Fungi - 6087; Plants - 17766; Viruses - 321; Other Eukaryotes - 13449 (source: NCBI BLink).  protein_id AT1G06700.2p  transcript_id AT1G06700.2  protein_id AT1G06700.2p  transcript_id AT1G06700.2  
At1g06710	chr1:002057279	0.0	C/2057279-2060119	AT1G06710.1 CDS  gene_syn F4H5.20, F4H5_20  go_component cellular_component|GO:0005575||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G06920.1); Has 27767 Blast hits to 6056 proteins in 188 species: Archae - 6; Bacteria - 22; Metazoa - 702; Fungi - 687; Plants - 24830; Viruses - 0; Other Eukaryotes - 1520 (source: NCBI BLink).  protein_id AT1G06710.1p  transcript_id AT1G06710.1  protein_id AT1G06710.1p  transcript_id AT1G06710.1  
At1g06720	chr1:002060615	0.0	C/2060615-2060776,2060872-2061075,2061197-2061445,2061528-2061737,2062196-2062435,2062603-2062821,2062892-2062944,2063365-2063671,2063760-2063956,2064119-2064299,2064636-2064925,2065132-2065372,2065833-2066043,2066132-2066322,2066496-2066614,2066733-2066823,2066902-2067048,2067150-2067281	AT1G06720.1 CDS  gene_syn F4H5.19, F4H5_19  go_component nucleus|GO:0005634||IEA  go_process ribosome biogenesis|GO:0042254||IEA  product unknown protein  note INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1); Has 7944 Blast hits to 5342 proteins in 373 species: Archae - 33; Bacteria - 667; Metazoa - 2609; Fungi - 1045; Plants - 414; Viruses - 80; Other Eukaryotes - 3096 (source: NCBI BLink).  protein_id AT1G06720.1p  transcript_id AT1G06720.1  protein_id AT1G06720.1p  transcript_id AT1G06720.1  
At1g06730	chr1:002067633	0.0	W/2067633-2068010,2068249-2068496,2068985-2069276,2069358-2069510,2069654-2070049	AT1G06730.1 CDS  gene_syn F4H5.18, F4H5_18  go_process D-ribose catabolic process|GO:0019303||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: D-ribose catabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT3G59480.1); Has 8525 Blast hits to 8520 proteins in 1199 species: Archae - 160; Bacteria - 6264; Metazoa - 85; Fungi - 26; Plants - 192; Viruses - 0; Other Eukaryotes - 1798 (source: NCBI BLink).  protein_id AT1G06730.1p  transcript_id AT1G06730.1  protein_id AT1G06730.1p  transcript_id AT1G06730.1  
At1g06740	chr1:002070737	0.0	W/2070737-2073535	AT1G06740.1 mRNA_TE_gene  pseudo  gene_syn F4H5.17, F4H5_17  note Transposable element gene, Mutator-like transposase family, has a 2.7e-53 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g06750	chr1:002073882	0.0	W/2073882-2073891,2073968-2074153,2074247-2074470,2074555-2074616,2074722-2074943,2075058-2075178,2075268-2075590,2075680-2075824,2076084-2076350	AT1G06750.1 CDS  gene_syn F4H5.16, F4H5_16  product unknown protein  note unknown protein; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30630.1); Has 124 Blast hits to 124 proteins in 28 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G06750.1p  transcript_id AT1G06750.1  protein_id AT1G06750.1p  transcript_id AT1G06750.1  
At1g06760	chr1:002076687	0.0	C/2076687-2077310,2077416-2077616	AT1G06760.1 CDS  gene_syn F4H5.15, F4H5_15  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleosome|GO:0000786||ISS  go_process nucleosome assembly|GO:0006334||ISS  go_function DNA binding|GO:0003677||ISS  product histone H1, putative  note histone H1, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: histone H1.2 (TAIR:AT2G30620.1); Has 17858 Blast hits to 9233 proteins in 1074 species: Archae - 29; Bacteria - 6881; Metazoa - 4363; Fungi - 1008; Plants - 721; Viruses - 117; Other Eukaryotes - 4739 (source: NCBI BLink).  protein_id AT1G06760.1p  transcript_id AT1G06760.1  protein_id AT1G06760.1p  transcript_id AT1G06760.1  
At1g06770	chr1:002079222	0.0	C/2079222-2079401,2079512-2079584,2079717-2079767,2079877-2080307,2080470-2080658	AT1G06770.2 CDS  gene_syn DREB2A-INTERACTING PROTEIN 1, DRIP1, F4H5.14, F4H5_14  gene DRIP1  function Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.  go_component nucleus|GO:0005634|18552202|IDA  go_process response to water deprivation|GO:0009414|18552202|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18552202|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product DRIP1 (DREB2A-INTERACTING PROTEIN 1); protein binding / ubiquitin-protein ligase/ zinc ion binding  note DREB2A-INTERACTING PROTEIN 1 (DRIP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: response to water deprivation; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: DRIP2 (DREB2A-INTERACTING PROTEIN 2); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT2G30580.1); Has 382 Blast hits to 325 proteins in 83 species: Archae - 0; Bacteria - 11; Metazoa - 171; Fungi - 34; Plants - 79; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT1G06770.2p  transcript_id AT1G06770.2  protein_id AT1G06770.2p  transcript_id AT1G06770.2  
At1g06770	chr1:002079222	0.0	C/2079222-2079401,2079512-2079584,2079717-2079767,2079877-2080307,2080470-2080794,2081107-2081206,2081602-2081707	AT1G06770.1 CDS  gene_syn DREB2A-INTERACTING PROTEIN 1, DRIP1, F4H5.14, F4H5_14  gene DRIP1  function Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.  go_component nucleus|GO:0005634|18552202|IDA  go_process response to water deprivation|GO:0009414|18552202|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18552202|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product DRIP1 (DREB2A-INTERACTING PROTEIN 1); protein binding / ubiquitin-protein ligase/ zinc ion binding  note DREB2A-INTERACTING PROTEIN 1 (DRIP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: response to water deprivation; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: DRIP2 (DREB2A-INTERACTING PROTEIN 2); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT2G30580.1); Has 1746 Blast hits to 1675 proteins in 159 species: Archae - 0; Bacteria - 16; Metazoa - 1247; Fungi - 109; Plants - 154; Viruses - 2; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G06770.1p  transcript_id AT1G06770.1  protein_id AT1G06770.1p  transcript_id AT1G06770.1  
At1g06780	chr1:002083689	0.0	W/2083689-2083800,2083991-2084025,2084186-2084227,2084318-2084399,2084487-2084557,2084808-2085079,2085225-2085582,2085716-2086237,2086578-2086853	AT1G06780.1 CDS  gene_syn F4H5.13, F4H5_13, GAUT6, Galacturonosyltransferase 6  gene GAUT6  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT6 (Galacturonosyltransferase 6); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups  note Galacturonosyltransferase 6 (GAUT6); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: LGT5 (LOS GLYCOSYLTRANSFERASE 5); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G30575.1); Has 706 Blast hits to 706 proteins in 109 species: Archae - 0; Bacteria - 139; Metazoa - 123; Fungi - 0; Plants - 432; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G06780.1p  transcript_id AT1G06780.1  protein_id AT1G06780.1p  transcript_id AT1G06780.1  
At1g06790	chr1:002087645	0.0	W/2087645-2087755,2087859-2087954,2088302-2088389,2088561-2088645,2088766-2088835,2088920-2089009,2089213-2089287	AT1G06790.1 CDS  gene_syn F4H5.12, F4H5_12  go_process transcription|GO:0006350||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component cellular_component|GO:0005575||ND  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product RNA polymerase Rpb7 N-terminal domain-containing protein  note RNA polymerase Rpb7 N-terminal domain-containing protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576), RNA polymerase III, subunit Rpc25 (InterPro:IPR013238); Has 625 Blast hits to 625 proteins in 198 species: Archae - 107; Bacteria - 0; Metazoa - 231; Fungi - 170; Plants - 43; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G06790.1p  transcript_id AT1G06790.1  protein_id AT1G06790.1p  transcript_id AT1G06790.1  
At1g06790	chr1:002087645	0.0	W/2087645-2087755,2087859-2087954,2088302-2088389,2088561-2088645,2088766-2088835,2088920-2089039	AT1G06790.2 CDS  gene_syn F4H5.12, F4H5_12  go_process transcription|GO:0006350||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component cellular_component|GO:0005575||ND  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product RNA polymerase Rpb7 N-terminal domain-containing protein  note RNA polymerase Rpb7 N-terminal domain-containing protein; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase Rpb7, N-terminal (InterPro:IPR005576), RNA polymerase III, subunit Rpc25 (InterPro:IPR013238); Has 610 Blast hits to 610 proteins in 194 species: Archae - 105; Bacteria - 0; Metazoa - 231; Fungi - 163; Plants - 41; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G06790.2p  transcript_id AT1G06790.2  protein_id AT1G06790.2p  transcript_id AT1G06790.2  
At1g06800	chr1:002089538	0.0	C/2089538-2089787,2090146-2091443	AT1G06800.1 CDS  gene_syn F4H5.11, F4H5_11  go_component chloroplast|GO:0009507||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G30550.2); Has 899 Blast hits to 893 proteins in 175 species: Archae - 0; Bacteria - 139; Metazoa - 44; Fungi - 208; Plants - 299; Viruses - 3; Other Eukaryotes - 206 (source: NCBI BLink).  protein_id AT1G06800.1p  transcript_id AT1G06800.1  protein_id AT1G06800.1p  transcript_id AT1G06800.1  
At1g06800	chr1:002090109	0.0	C/2090109-2091443	AT1G06800.2 CDS  gene_syn F4H5.11, F4H5_11  go_component chloroplast|GO:0009507||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT2G30550.1); Has 898 Blast hits to 892 proteins in 175 species: Archae - 0; Bacteria - 139; Metazoa - 44; Fungi - 210; Plants - 298; Viruses - 3; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT1G06800.2p  transcript_id AT1G06800.2  protein_id AT1G06800.2p  transcript_id AT1G06800.2  
At1g06810	chr1:002091738	0.0	C/2091738-2091830,2091930-2092309,2092393-2092528	AT1G06810.1 CDS  gene_syn F4H5.25, F4H5_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05400.2); Has 43 Blast hits to 40 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06810.1p  transcript_id AT1G06810.1  protein_id AT1G06810.1p  transcript_id AT1G06810.1  
At1g06820	chr1:002093145	0.0	C/2093145-2093218,2093312-2093420,2093521-2093631,2093793-2093906,2094016-2094150,2094234-2094382,2094496-2094574,2094681-2094833,2094911-2094967,2095069-2095151,2095309-2095408,2095485-2095691,2095804-2096220	AT1G06820.1 CDS  gene_syn CAROTENOID AND CHLOROPLAST REGULATION 2, CAROTENOID ISOMERASE, CCR2, CRTISO, F4H5.10, F4H5_10  gene CRTISO  function Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.  go_component chloroplast|GO:0009507||TAS  go_process etioplast organization|GO:0009662|11884677|IMP  go_process carotenoid biosynthetic process|GO:0016117|11884677|IGI  go_process carotenoid biosynthetic process|GO:0016117|11884677|TAS  go_process carotenoid biosynthetic process|GO:0016117|11884678|TAS  go_function carotenoid isomerase activity|GO:0046608|11884677|IGI  go_function carotenoid isomerase activity|GO:0046608|11884677|IMP  product CRTISO (CAROTENOID ISOMERASE); carotenoid isomerase  note CAROTENOID ISOMERASE (CRTISO); FUNCTIONS IN: carotenoid isomerase activity; INVOLVED IN: carotenoid biosynthetic process, etioplast organization; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: amine oxidase family (TAIR:AT1G57770.1); Has 5143 Blast hits to 5092 proteins in 551 species: Archae - 117; Bacteria - 1701; Metazoa - 138; Fungi - 51; Plants - 84; Viruses - 0; Other Eukaryotes - 3052 (source: NCBI BLink).  protein_id AT1G06820.1p  transcript_id AT1G06820.1  protein_id AT1G06820.1p  transcript_id AT1G06820.1  
At1g06830	chr1:002097189	0.0	W/2097189-2097488	AT1G06830.1 CDS  gene_syn F4H5.9, F4H5_9  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  product glutaredoxin family protein  note glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT2G30540.1); Has 650 Blast hits to 649 proteins in 97 species: Archae - 0; Bacteria - 2; Metazoa - 174; Fungi - 56; Plants - 405; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G06830.1p  transcript_id AT1G06830.1  protein_id AT1G06830.1p  transcript_id AT1G06830.1  
At1g06840	chr1:002097854	0.0	C/2097854-2098195,2098276-2098410,2098489-2098739,2098943-2098994,2099077-2099360,2099468-2099626,2099851-2100353,2100553-2100621,2100730-2100816,2100934-2101005,2101138-2101206,2101310-2101378,2101661-2101735,2101853-2101924,2102078-2102149,2102266-2102409,2102484-2102555,2102653-2102724,2102808-2102954,2103406-2103479	AT1G06840.1 CDS  gene_syn F4H5.8, F4H5_8  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT5G01950.1); Has 135246 Blast hits to 100144 proteins in 3443 species: Archae - 81; Bacteria - 10553; Metazoa - 52595; Fungi - 7237; Plants - 46569; Viruses - 358; Other Eukaryotes - 17853 (source: NCBI BLink).  protein_id AT1G06840.1p  transcript_id AT1G06840.1  protein_id AT1G06840.1p  transcript_id AT1G06840.1  
At1g06850	chr1:002105233	0.0	W/2105233-2105693,2105774-2105906,2106018-2106102,2106184-2106246,2106354-2106364	AT1G06850.2 CDS  gene_syn Arabidopsis thaliana basic leucine zipper 52, AtbZIP52, F4H5.7, F4H5_7  gene AtbZIP52  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine zipper 52 (AtbZIP52); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT2G40620.1); Has 1112 Blast hits to 1112 proteins in 140 species: Archae - 0; Bacteria - 8; Metazoa - 190; Fungi - 88; Plants - 786; Viruses - 2; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G06850.2p  transcript_id AT1G06850.2  protein_id AT1G06850.2p  transcript_id AT1G06850.2  
At1g06850	chr1:002105233	0.0	W/2105233-2105693,2105774-2105906,2106018-2106102,2106184-2106518	AT1G06850.1 CDS  gene_syn Arabidopsis thaliana basic leucine zipper 52, AtbZIP52, F4H5.7, F4H5_7  gene AtbZIP52  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52); DNA binding / transcription factor  note Arabidopsis thaliana basic leucine zipper 52 (AtbZIP52); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT2G40620.1); Has 1198 Blast hits to 1198 proteins in 152 species: Archae - 0; Bacteria - 20; Metazoa - 228; Fungi - 109; Plants - 784; Viruses - 2; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G06850.1p  transcript_id AT1G06850.1  protein_id AT1G06850.1p  transcript_id AT1G06850.1  
At1g06860	chr1:002107398	0.0	C/2107398-2107468	AT1G06860.1 tRNA  gene_syn 52131.TRNA-GLY-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G06860.1  
At1g06870	chr1:002108832	0.0	W/2108832-2109518,2109763-2109831,2109918-2109986,2110170-2110256,2110358-2110425,2110519-2110642	AT1G06870.1 CDS  gene_syn F4H5.6, F4H5_6  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product signal peptidase, putative  note signal peptidase, putative; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: chloroplast thylakoidal processing peptidase (TAIR:AT2G30440.1); Has 5736 Blast hits to 5607 proteins in 1273 species: Archae - 0; Bacteria - 3551; Metazoa - 182; Fungi - 62; Plants - 118; Viruses - 0; Other Eukaryotes - 1823 (source: NCBI BLink).  protein_id AT1G06870.1p  transcript_id AT1G06870.1  protein_id AT1G06870.1p  transcript_id AT1G06870.1  
At1g06880	chr1:002111148	0.0	C/2111148-2111218	AT1G06880.1 tRNA  gene_syn 52131.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: GCC)  transcript_id AT1G06880.1  
At1g06890	chr1:002111728	0.0	C/2111728-2111859,2112064-2112336,2112438-2112599,2112706-2112838,2113071-2113138,2113237-2113421,2113918-2114038	AT1G06890.1 CDS  gene_syn F4H5.5, F4H5_5  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020|11152613|ISS  product transporter-related  note transporter-related; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30460.2); Has 1730 Blast hits to 1725 proteins in 204 species: Archae - 2; Bacteria - 41; Metazoa - 571; Fungi - 289; Plants - 633; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT1G06890.1p  transcript_id AT1G06890.1  protein_id AT1G06890.1p  transcript_id AT1G06890.1  
At1g06890	chr1:002111728	0.0	C/2111728-2111859,2112064-2112336,2112438-2112599,2112706-2112838,2113071-2113138,2113237-2113421,2113918-2114038	AT1G06890.2 CDS  gene_syn F4H5.5, F4H5_5  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020|11152613|ISS  product transporter-related  note transporter-related; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30460.2); Has 1730 Blast hits to 1725 proteins in 204 species: Archae - 2; Bacteria - 41; Metazoa - 571; Fungi - 289; Plants - 633; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT1G06890.2p  transcript_id AT1G06890.2  protein_id AT1G06890.2p  transcript_id AT1G06890.2  
At1g06900	chr1:002115155	0.0	C/2115155-2115398,2115521-2115642,2115730-2115883,2115974-2116077,2116193-2116396,2116512-2116694,2116824-2116973,2117051-2117430,2117517-2117666,2117822-2117978,2118235-2118383,2118485-2118718,2118846-2118965,2119055-2119150,2119284-2119357,2119666-2119778,2120011-2120057,2120156-2120231,2120318-2120635	AT1G06900.1 CDS  gene_syn F4H5.4, F4H5_4  go_process proteolysis|GO:0006508||IEA  go_function catalytic activity|GO:0003824||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding  note catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding; FUNCTIONS IN: metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: peptidase M16 family protein / insulinase family protein (TAIR:AT2G41790.1); Has 36095 Blast hits to 16198 proteins in 1364 species: Archae - 66; Bacteria - 4521; Metazoa - 14084; Fungi - 4071; Plants - 1728; Viruses - 678; Other Eukaryotes - 10947 (source: NCBI BLink).  protein_id AT1G06900.1p  transcript_id AT1G06900.1  protein_id AT1G06900.1p  transcript_id AT1G06900.1  
At1g06910	chr1:002121099	0.0	W/2121099-2121681,2121788-2122074,2122437-2122621,2122708-2122768,2122858-2122914	AT1G06910.1 CDS  gene_syn TRF-LIKE 7, TRFL7  gene TRFL7  function Arabidopsis thaliana myb family transcription factor (At1g06910)  go_function DNA binding|GO:0003677||IEA  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product TRFL7 (TRF-LIKE 7); DNA binding / transcription factor  note TRF-LIKE 7 (TRFL7); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to salicylic acid stimulus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL5 (TRF-LIKE 5); DNA binding / transcription factor (TAIR:AT1G15720.1); Has 47 Blast hits to 47 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 6; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G06910.1p  transcript_id AT1G06910.1  protein_id AT1G06910.1p  transcript_id AT1G06910.1  
At1g06920	chr1:002124854	0.0	C/2124854-2125801	AT1G06920.1 CDS  gene_syn ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ATOFP4, F4H5.2, F4H5_2, OFP4  gene OFP4  go_process biological_process|GO:0008150||ND  product OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4)  note ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4 (OFP4); INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623, plant (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: OFP2 (OVATE FAMILY PROTEIN 2) (TAIR:AT2G30400.1); Has 298 Blast hits to 288 proteins in 42 species: Archae - 0; Bacteria - 6; Metazoa - 49; Fungi - 2; Plants - 206; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G06920.1p  transcript_id AT1G06920.1  protein_id AT1G06920.1p  transcript_id AT1G06920.1  
At1g06923	chr1:002126802	0.0	W/2126802-2127000,2127085-2127398	AT1G06923.1 CDS  product unknown protein  note BEST Arabidopsis thaliana protein match is: OFP17 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 17) (TAIR:AT2G30395.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06923.1p  transcript_id AT1G06923.1  protein_id AT1G06923.1p  transcript_id AT1G06923.1  
At1g06925	chr1:002127704	0.0	C/2127704-2128037,2128151-2128216,2128580-2128611	AT1G06925.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20480.1); Has 47 Blast hits to 45 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06925.1p  transcript_id AT1G06925.1  protein_id AT1G06925.1p  transcript_id AT1G06925.1  
At1g06930	chr1:002129163	0.0	W/2129163-2129672	AT1G06930.1 CDS  gene_syn F4H5.24, F4H5_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 4901 Blast hits to 288 proteins in 66 species: Archae - 0; Bacteria - 24; Metazoa - 749; Fungi - 106; Plants - 54; Viruses - 24; Other Eukaryotes - 3944 (source: NCBI BLink).  protein_id AT1G06930.1p  transcript_id AT1G06930.1  protein_id AT1G06930.1p  transcript_id AT1G06930.1  
At1g06950	chr1:002130303	0.0	C/2130303-2130551,2130660-2131631,2131738-2131863,2132018-2132172,2132479-2132695,2132837-2132937,2133011-2133138,2133569-2133663,2133741-2133805,2134124-2134190,2134320-2134418,2134513-2134581,2134688-2134811,2134897-2134956,2135040-2135563	AT1G06950.1 CDS  gene_syn ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, ATTIC110, TIC110, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110  gene TIC110  function Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast|GO:0009507|15659100|IDA  go_component Tic complex|GO:0031897|15659100|TAS  go_process chloroplast organization|GO:0009658|15659100|IMP  go_process protein import into chloroplast stroma|GO:0045037|15659100|IMP  product TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110)  note TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110 (TIC110); INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: chloroplast, membrane, chloroplast envelope, Tic complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 98 Blast hits to 90 proteins in 42 species: Archae - 2; Bacteria - 6; Metazoa - 17; Fungi - 9; Plants - 40; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G06950.1p  transcript_id AT1G06950.1  protein_id AT1G06950.1p  transcript_id AT1G06950.1  
At1g06960	chr1:002135930	0.0	W/2135930-2136002,2136415-2136587,2136871-2136964,2137067-2137143,2137264-2137533	AT1G06960.2 CDS  gene_syn F10K1.32, F10K1_32  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative  note small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2B   (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT2G30260.1); Has 1184 Blast hits to 1174 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 646; Fungi - 257; Plants - 127; Viruses - 1; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT1G06960.2p  transcript_id AT1G06960.2  protein_id AT1G06960.2p  transcript_id AT1G06960.2  
At1g06960	chr1:002135930	0.0	W/2135930-2136002,2136415-2136587,2136871-2136964,2137067-2137146,2137264-2137533	AT1G06960.1 CDS  gene_syn F10K1.32, F10K1_32  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative  note small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2B   (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT2G30260.1); Has 1187 Blast hits to 1180 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 655; Fungi - 246; Plants - 133; Viruses - 1; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT1G06960.1p  transcript_id AT1G06960.1  protein_id AT1G06960.1p  transcript_id AT1G06960.1  
At1g06960	chr1:002135982	0.0	W/2135982-2136002,2136450-2136587,2136871-2136964,2137067-2137146,2137264-2137533	AT1G06960.3 CDS  gene_syn F10K1.32, F10K1_32  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative  note small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2B   (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT2G30260.1); Has 739 Blast hits to 734 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 201; Plants - 88; Viruses - 1; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G06960.3p  transcript_id AT1G06960.3  protein_id AT1G06960.3p  transcript_id AT1G06960.3  
At1g06970	chr1:002138109	0.0	W/2138109-2138360,2138485-2139480,2139577-2140818	AT1G06970.1 CDS  gene_syn ATCHX14, CATION/HYDROGEN EXCHANGER 14, CHX14, F10K1.31, F10K1_31  gene CHX14  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product CHX14 (CATION/HYDROGEN EXCHANGER 14); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/HYDROGEN EXCHANGER 14 (CHX14); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX13; monovalent cation:proton antiporter/ potassium ion transmembrane transporter/ sodium:hydrogen antiporter (TAIR:AT2G30240.1); Has 2501 Blast hits to 2486 proteins in 688 species: Archae - 141; Bacteria - 1675; Metazoa - 0; Fungi - 80; Plants - 246; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).  protein_id AT1G06970.1p  transcript_id AT1G06970.1  protein_id AT1G06970.1p  transcript_id AT1G06970.1  
At1g06980	chr1:002143248	0.0	C/2143248-2143757	AT1G06980.1 CDS  gene_syn F10K1.30, F10K1_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 90 Blast hits to 90 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G06980.1p  transcript_id AT1G06980.1  protein_id AT1G06980.1p  transcript_id AT1G06980.1  
At1g06990	chr1:002148393	0.0	W/2148393-2149022,2149150-2149411,2149819-2150009	AT1G06990.1 CDS  gene_syn F10K1.29, F10K1_29  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: RXF26; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G58430.1); Has 1862 Blast hits to 1840 proteins in 163 species: Archae - 0; Bacteria - 233; Metazoa - 1; Fungi - 18; Plants - 1587; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G06990.1p  transcript_id AT1G06990.1  protein_id AT1G06990.1p  transcript_id AT1G06990.1  
At1g07000	chr1:002150398	0.0	C/2150398-2151705,2151814-2152305	AT1G07000.1 CDS  gene_syn ATEXO70B2, F10K1.28, F10K1_28, exocyst subunit EXO70 family protein B2  gene ATEXO70B2  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70B2 (exocyst subunit EXO70 family protein B2); protein binding  note exocyst subunit EXO70 family protein B2 (ATEXO70B2); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70B1 (exocyst subunit EXO70 family protein B1); protein binding (TAIR:AT5G58430.1); Has 492 Blast hits to 490 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 8; Plants - 374; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G07000.1p  transcript_id AT1G07000.1  protein_id AT1G07000.1p  transcript_id AT1G07000.1  
At1g07010	chr1:002152949	0.0	W/2152949-2153132,2153196-2153308,2153391-2153423,2153504-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.3 CDS  gene_syn F10K1.27, F10K1_27  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G18480.1).  protein_id AT1G07010.3p  transcript_id AT1G07010.3  protein_id AT1G07010.3p  transcript_id AT1G07010.3  
At1g07010	chr1:002152949	0.0	W/2152949-2153132,2153223-2153323,2153492-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.1 CDS  gene_syn F10K1.27, F10K1_27  go_component peroxisome|GO:0005777|12154131|IDA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G18480.1); Has 499 Blast hits to 499 proteins in 144 species: Archae - 6; Bacteria - 198; Metazoa - 0; Fungi - 24; Plants - 54; Viruses - 3; Other Eukaryotes - 214 (source: NCBI BLink).  protein_id AT1G07010.1p  transcript_id AT1G07010.1  protein_id AT1G07010.1p  transcript_id AT1G07010.1  
At1g07010	chr1:002152949	0.0	W/2152949-2153132,2153223-2153323,2153504-2153605,2153750-2153962,2154052-2154187,2154274-2154449,2154547-2154635,2154719-2154788,2154882-2154968	AT1G07010.2 CDS  gene_syn F10K1.27, F10K1_27  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G18480.1); Has 40 Blast hits to 40 proteins in 18 species: Archae - 0; Bacteria - 29; Metazoa - 0; Fungi - 6; Plants - 0; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G07010.2p  transcript_id AT1G07010.2  protein_id AT1G07010.2p  transcript_id AT1G07010.2  
At1g07020	chr1:002155319	0.0	C/2155319-2155755,2155878-2155884	AT1G07020.1 CDS  gene_syn F10K1.34, F10K1_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 22 Blast hits to 22 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 3; Plants - 11; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G07020.1p  transcript_id AT1G07020.1  protein_id AT1G07020.1p  transcript_id AT1G07020.1  
At1g07025	chr1:002157658	0.0	C/2157658-2158158	AT1G07025.1 CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G30160.1); Has 1941 Blast hits to 1765 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 1290; Fungi - 314; Plants - 227; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G07025.1p  transcript_id AT1G07025.1  protein_id AT1G07025.1p  transcript_id AT1G07025.1  
At1g07030	chr1:002158631	0.0	C/2158631-2158837,2159751-2160524	AT1G07030.1 CDS  gene_syn F10K1.26, F10K1_26  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G30160.1); Has 19774 Blast hits to 10070 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 9836; Fungi - 5154; Plants - 2928; Viruses - 0; Other Eukaryotes - 1856 (source: NCBI BLink).  protein_id AT1G07030.1p  transcript_id AT1G07030.1  protein_id AT1G07030.1p  transcript_id AT1G07030.1  
At1g07040	chr1:002161225	0.0	C/2161225-2161323,2161490-2161644,2161722-2161885,2161975-2162096,2162171-2162386,2162477-2162629,2162829-2163035	AT1G07040.1 CDS  gene_syn F10K1.25, F10K1_25  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 403 Blast hits to 403 proteins in 131 species: Archae - 0; Bacteria - 232; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G07040.1p  transcript_id AT1G07040.1  protein_id AT1G07040.1p  transcript_id AT1G07040.1  
At1g07050	chr1:002164327	0.0	C/2164327-2164353,2164482-2164634,2164726-2165133	AT1G07050.1 CDS  gene_syn F10K1.24, F10K1_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CONSTANS-like protein-related  note CONSTANS-like protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CIL (TAIR:AT4G25990.1); Has 984 Blast hits to 984 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 943; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G07050.1p  transcript_id AT1G07050.1  protein_id AT1G07050.1p  transcript_id AT1G07050.1  
At1g07051	chr1:002165517	0.0	W/2165517-2165746	AT1G07051.1 miRNA  gene_syn MICRORNA847A, MIR847A  gene MIR847A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCACUCCUCUUCUUCUUGAUG  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR847A (MICRORNA847A); miRNA  transcript_id AT1G07051.1  
At1g07060	chr1:002167138	0.0	C/2167138-2167347,2167671-2167814,2167965-2168172,2168258-2168397	AT1G07060.1 CDS  gene_syn F10K1.23, F10K1_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07060.1p  transcript_id AT1G07060.1  protein_id AT1G07060.1p  transcript_id AT1G07060.1  
At1g07070	chr1:002168652	0.0	W/2168652-2168683,2168909-2168944,2169341-2169569,2169662-2169703	AT1G07070.1 CDS  gene_syn F10K1.22, F10K1_22  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L35a (RPL35aA)  note 60S ribosomal protein L35a (RPL35aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L35a (RPL35aC) (TAIR:AT1G74270.1); Has 541 Blast hits to 541 proteins in 186 species: Archae - 21; Bacteria - 0; Metazoa - 228; Fungi - 97; Plants - 93; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G07070.1p  transcript_id AT1G07070.1  protein_id AT1G07070.1p  transcript_id AT1G07070.1  
At1g07080	chr1:002170069	0.0	W/2170069-2170350,2170524-2170589,2170702-2170842,2171065-2171157,2171646-2171861	AT1G07080.1 CDS  gene_syn F10K1.21, F10K1_21  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein  note gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: OSH1 (OAS HIGH ACCUMULATION 1); catalytic (TAIR:AT5G01580.1); Has 339 Blast hits to 336 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G07080.1p  transcript_id AT1G07080.1  protein_id AT1G07080.1p  transcript_id AT1G07080.1  
At1g07090	chr1:002174202	0.0	C/2174202-2174792	AT1G07090.1 CDS  gene_syn F10K1.20, F10K1_20, LIGHT SENSITIVE HYPOCOTYLS 6, LSH6  gene LSH6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)  note LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) (TAIR:AT5G58500.1); Has 185 Blast hits to 185 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07090.1p  transcript_id AT1G07090.1  protein_id AT1G07090.1p  transcript_id AT1G07090.1  
At1g07100	chr1:002177885	0.0	W/2177885-2177958	AT1G07100.1 tRNA  gene_syn 61269.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: TAT)  transcript_id AT1G07100.1  
At1g07110	chr1:002178363	0.0	C/2178363-2178440,2178555-2178620,2178771-2178834,2178915-2178983,2179108-2179199,2179293-2179355,2179942-2180017,2180254-2180351,2180577-2180624,2180751-2180825,2180954-2181011,2181086-2181177,2181379-2181456,2181529-2181582,2181761-2181814,2181903-2181932,2182038-2182136,2182325-2182420,2182516-2182716,2182811-2183026,2183217-2183509,2183630-2183693,2183810-2183980	AT1G07110.1 CDS  gene_syn ATF2KP, F10K1.19, F10K1_19, F2KP, FKFBP, FRUCTOSE-2,6-BISPHOSPHATASE, FRUCTOSE-6-PHOSPHATE 2-KINASE  gene F2KP  function Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process fructose metabolic process|GO:0006000|10899575|IMP  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function fructose-2,6-bisphosphate 2-phosphatase activity|GO:0004331|10899575|IMP  product F2KP (FRUCTOSE-2,6-BISPHOSPHATASE); fructose-2,6-bisphosphate 2-phosphatase  note FRUCTOSE-2,6-BISPHOSPHATASE (F2KP); FUNCTIONS IN: fructose-2,6-bisphosphate 2-phosphatase activity; INVOLVED IN: N-terminal protein myristoylation, fructose metabolic process; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase (InterPro:IPR016260), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345), Fructose-2,6-bisphosphatase (InterPro:IPR003094), Carbohydrate-binding-like fold (InterPro:IPR013784), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Phosphoglycerate mutase (InterPro:IPR013078), 6-phosphofructo-2-kinase (InterPro:IPR013079); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30200.1); Has 2917 Blast hits to 2813 proteins in 669 species: Archae - 2; Bacteria - 1510; Metazoa - 464; Fungi - 342; Plants - 79; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT1G07110.1p  transcript_id AT1G07110.1  protein_id AT1G07110.1p  transcript_id AT1G07110.1  
At1g07119	chr1:002184347	0.0	W/2184347-2186539	AT1G07119.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G07120  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G07119.1  
At1g07120	chr1:002184874	0.0	C/2184874-2184954,2185034-2185165,2185399-2185510,2185600-2185916,2186044-2186580	AT1G07120.1 CDS  gene_syn F10K1.18, F10K1_18  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: leaf whorl, petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT4G18570.1); Has 197 Blast hits to 171 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 25; Fungi - 11; Plants - 78; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G07120.1p  transcript_id AT1G07120.1  protein_id AT1G07120.1p  transcript_id AT1G07120.1  
At1g07130	chr1:002187928	0.0	W/2187928-2188410	AT1G07130.1 CDS  gene_syn ATSTN1, F10K1.17, F10K1_17, STN1  gene STN1  function Encodes a protein with similarity to yeast STN1, an OB fold protein involved in protecting yeast telomeres. In Arabidopsis, loss of STN1 function mutations exhibit gross morphological abnormalities and defects in telomere architecture and maintenance. STN1 likely plays a role in telomere end capping.  go_function nucleic acid binding|GO:0003676||IEA  go_component nuclear chromosome, telomeric region|GO:0000784|19064932|IDA  go_process telomere capping|GO:0016233|19064932|IMP  product STN1; nucleic acid binding  note STN1; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: telomere capping; LOCATED IN: nuclear chromosome, telomeric region; EXPRESSED IN: root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); Has 73 Blast hits to 73 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 43; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G07130.1p  transcript_id AT1G07130.1  protein_id AT1G07130.1p  transcript_id AT1G07130.1  
At1g07135	chr1:002190157	0.0	C/2190157-2190624	AT1G07135.1 CDS  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; Has 21223 Blast hits to 7917 proteins in 705 species: Archae - 21; Bacteria - 6537; Metazoa - 6020; Fungi - 1304; Plants - 4042; Viruses - 441; Other Eukaryotes - 2858 (source: NCBI BLink).  protein_id AT1G07135.1p  transcript_id AT1G07135.1  protein_id AT1G07135.1p  transcript_id AT1G07135.1  
At1g07140	chr1:002192360	0.0	C/2192360-2192613,2193030-2193155,2193262-2193413,2193534-2193688	AT1G07140.1 CDS  gene_syn F10K1.15, F10K1_15, RAN-BINDING PROTEIN SIRANBP, SIRANBP  gene SIRANBP  function Encodes a putative Ran-binding protein (siRanBP).  go_process intracellular transport|GO:0046907||IEA  go_component cellular_component|GO:0005575||ND  go_process protein import into nucleus, translocation|GO:0000060||ISS  go_function Ran GTPase binding|GO:0008536||ISS  product SIRANBP; Ran GTPase binding  note SIRANBP; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ran Binding Protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: RANBP1 (RAN BINDING PROTEIN 1); protein binding (TAIR:AT5G58590.1); Has 1930 Blast hits to 1371 proteins in 204 species: Archae - 9; Bacteria - 58; Metazoa - 1032; Fungi - 252; Plants - 104; Viruses - 39; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT1G07140.1p  transcript_id AT1G07140.1  protein_id AT1G07140.1p  transcript_id AT1G07140.1  
At1g07150	chr1:002194279	0.0	C/2194279-2195778	AT1G07150.1 CDS  gene_syn F10K1.14, F10K1_14, MAPKKK13, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 13  gene MAPKKK13  function member of MEKK subfamily  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product MAPKKK13; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note MAPKKK13; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPKKK14; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G30040.1); Has 84383 Blast hits to 83396 proteins in 2283 species: Archae - 76; Bacteria - 6495; Metazoa - 37674; Fungi - 7802; Plants - 16234; Viruses - 536; Other Eukaryotes - 15566 (source: NCBI BLink).  protein_id AT1G07150.1p  transcript_id AT1G07150.1  protein_id AT1G07150.1p  transcript_id AT1G07150.1  
At1g07160	chr1:002198155	0.0	C/2198155-2198499,2198575-2198919,2199226-2199678	AT1G07160.1 CDS  gene_syn F10K1.13, F10K1_13  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: chloroplast, protein serine/threonine phosphatase complex; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G30020.1); Has 4757 Blast hits to 4614 proteins in 388 species: Archae - 6; Bacteria - 337; Metazoa - 1505; Fungi - 554; Plants - 1322; Viruses - 11; Other Eukaryotes - 1022 (source: NCBI BLink).  protein_id AT1G07160.1p  transcript_id AT1G07160.1  protein_id AT1G07160.1p  transcript_id AT1G07160.1  
At1g07170	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.1 CDS  gene_syn F10K1.35  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30000.1); Has 292 Blast hits to 292 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 75; Plants - 47; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G07170.1p  transcript_id AT1G07170.1  protein_id AT1G07170.1p  transcript_id AT1G07170.1  
At1g07170	chr1:002200686	0.0	W/2200686-2201018	AT1G07170.2 CDS  gene_syn F10K1.35  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30000.1); Has 292 Blast hits to 292 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 75; Plants - 47; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G07170.2p  transcript_id AT1G07170.2  protein_id AT1G07170.2p  transcript_id AT1G07170.2  
At1g07175	chr1:002202382	0.0	W/2202382-2202472,2202650-2202774	AT1G07175.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29995.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07175.1p  transcript_id AT1G07175.1  protein_id AT1G07175.1p  transcript_id AT1G07175.1  
At1g07180	chr1:002204414	0.0	W/2204414-2204893,2205179-2205392,2205483-2205643,2205734-2205799,2205886-2206049,2206143-2206257,2206339-2206518,2206621-2206773	AT1G07180.1 CDS  gene_syn ALTERNATIVE NAD(P)H DEHYDROGENASE 1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, ATNDI1, F10K1.11, F10K1_11, NADH-DEHYDROGENASE, NDA1  gene NDA1  function Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.  go_component mitochondrion|GO:0005739|14630960|IDA  go_component intrinsic to mitochondrial inner membrane|GO:0031304|16258072|IDA  go_function NADH dehydrogenase activity|GO:0003954|14630960|IMP  go_function NADH dehydrogenase activity|GO:0003954||ISS  product NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1); NADH dehydrogenase  note ALTERNATIVE NAD(P)H DEHYDROGENASE 1 (NDA1); FUNCTIONS IN: NADH dehydrogenase activity; LOCATED IN: intrinsic to mitochondrial inner membrane, mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2); FAD binding / NADH dehydrogenase/ oxidoreductase (TAIR:AT2G29990.1); Has 5387 Blast hits to 5274 proteins in 1175 species: Archae - 120; Bacteria - 3733; Metazoa - 55; Fungi - 391; Plants - 199; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink).  protein_id AT1G07180.1p  transcript_id AT1G07180.1  protein_id AT1G07180.1p  transcript_id AT1G07180.1  
At1g07190	chr1:002208013	0.0	W/2208013-2208177	AT1G07190.1 CDS  gene_syn F10K1.10, F10K1_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: LON1 (LON PROTEASE 1); ATP binding / ATP-dependent peptidase/ serine-type peptidase (TAIR:AT5G26860.1); Has 53 Blast hits to 53 proteins in 18 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 8; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G07190.1p  transcript_id AT1G07190.1  protein_id AT1G07190.1p  transcript_id AT1G07190.1  
At1g07200	chr1:002209033	0.0	C/2209033-2210301	AT1G07200.1 CDS  gene_syn F10K1.9, F10K1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-dependent Clp protease ClpB protein-related  note ATP-dependent Clp protease ClpB protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT2G29970.1); Has 8595 Blast hits to 8595 proteins in 1496 species: Archae - 9; Bacteria - 6147; Metazoa - 69; Fungi - 173; Plants - 245; Viruses - 0; Other Eukaryotes - 1952 (source: NCBI BLink).  protein_id AT1G07200.1p  transcript_id AT1G07200.1  protein_id AT1G07200.1p  transcript_id AT1G07200.1  
At1g07200	chr1:002209033	0.0	C/2209033-2210523,2210607-2210859,2211121-2212316	AT1G07200.2 CDS  gene_syn F10K1.9, F10K1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP binding|GO:0005524||ISS  product ATP-dependent Clp protease ClpB protein-related  note ATP-dependent Clp protease ClpB protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT2G29970.1); Has 8745 Blast hits to 8618 proteins in 1498 species: Archae - 9; Bacteria - 6193; Metazoa - 69; Fungi - 201; Plants - 318; Viruses - 0; Other Eukaryotes - 1955 (source: NCBI BLink).  protein_id AT1G07200.2p  transcript_id AT1G07200.2  protein_id AT1G07200.2p  transcript_id AT1G07200.2  
At1g07210	chr1:002215320	0.0	W/2215320-2215422,2215513-2215856,2216155-2216241,2216327-2216386,2216477-2216668	AT1G07210.1 CDS  gene_syn F10K1.8, F10K1_8  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 30S ribosomal protein S18 family  note 30S ribosomal protein S18 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S18 (InterPro:IPR001648); Has 3606 Blast hits to 3606 proteins in 1189 species: Archae - 0; Bacteria - 2426; Metazoa - 33; Fungi - 15; Plants - 158; Viruses - 0; Other Eukaryotes - 974 (source: NCBI BLink).  protein_id AT1G07210.1p  transcript_id AT1G07210.1  protein_id AT1G07210.1p  transcript_id AT1G07210.1  
At1g07220	chr1:002217073	0.0	C/2217073-2217420,2217499-2217709,2217795-2217859,2217936-2218125,2218202-2218552,2218669-2218907,2219260-2219379	AT1G07220.1 CDS  gene_syn F10K1.7, F10K1_7  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23850.1); Has 456 Blast hits to 452 proteins in 94 species: Archae - 0; Bacteria - 34; Metazoa - 198; Fungi - 90; Plants - 113; Viruses - 2; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G07220.1p  transcript_id AT1G07220.1  protein_id AT1G07220.1p  transcript_id AT1G07220.1  
At1g07230	chr1:002220509	0.0	C/2220509-2220834,2221206-2221382,2221680-2222778	AT1G07230.1 CDS  gene_syn F10K1.6, F10K1_6  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||ISS  product hydrolase, acting on ester bonds  note hydrolase, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: phosphoesterase family protein (TAIR:AT2G26870.1); Has 1409 Blast hits to 1383 proteins in 225 species: Archae - 10; Bacteria - 1165; Metazoa - 0; Fungi - 100; Plants - 90; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G07230.1p  transcript_id AT1G07230.1  protein_id AT1G07230.1p  transcript_id AT1G07230.1  
At1g07240	chr1:002223889	0.0	W/2223889-2225331	AT1G07240.1 CDS  gene_syn F10K1.5, F10K1_5, UDP-GLUCOSYL TRANSFERASE 71C5, UGT71C5  gene UGT71C5  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT71C5 (UDP-GLUCOSYL TRANSFERASE 71C5); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71C5 (UGT71C5); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4); quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G07250.1); Has 4789 Blast hits to 4760 proteins in 276 species: Archae - 0; Bacteria - 131; Metazoa - 1995; Fungi - 11; Plants - 2611; Viruses - 12; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G07240.1p  transcript_id AT1G07240.1  protein_id AT1G07240.1p  transcript_id AT1G07240.1  
At1g07250	chr1:002225963	0.0	W/2225963-2227402	AT1G07250.1 CDS  gene_syn F10K1.4, F10K1_4, UDP-GLUCOSYL TRANSFERASE 71C4, UGT71C4  gene UGT71C4  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  go_function quercetin 7-O-glucosyltransferase activity|GO:0080044|15352060|IDA  product UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4); quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71C4 (UGT71C4); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G07260.1); Has 4707 Blast hits to 4690 proteins in 296 species: Archae - 0; Bacteria - 123; Metazoa - 1851; Fungi - 11; Plants - 2658; Viruses - 37; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G07250.1p  transcript_id AT1G07250.1  protein_id AT1G07250.1p  transcript_id AT1G07250.1  
At1g07260	chr1:002227748	0.0	C/2227748-2229178	AT1G07260.1 CDS  gene_syn F10K1.3, F10K1_3, UDP-GLUCOSYL TRANSFERASE 71C3, UGT71C3  gene UGT71C3  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 71C3 (UGT71C3); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2); UDP-glycosyltransferase/ quercetin 3 -O-glucosyltransferase/ quercetin 3-O-glucosyltransferase/ quercetin 7-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G29740.1); Has 4810 Blast hits to 4788 proteins in 302 species: Archae - 0; Bacteria - 150; Metazoa - 1930; Fungi - 10; Plants - 2650; Viruses - 42; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G07260.1p  transcript_id AT1G07260.1  protein_id AT1G07260.1p  transcript_id AT1G07260.1  
At1g07270	chr1:002229757	0.0	C/2229757-2229789,2229887-2229976,2230109-2230204,2230326-2230388,2230516-2230605,2230708-2230789,2230978-2231027,2231144-2231194,2231320-2231393,2231509-2231568,2231661-2231767,2231846-2231955,2232027-2232101,2232189-2232409,2232490-2232583,2232676-2232897	AT1G07270.1 CDS  gene_syn F10K1.2, F10K1_2  go_process DNA replication|GO:0006260||ISS  go_process regulation of cell cycle|GO:0051726||ISS  product cell division control protein CDC6b, putative (CDC6b)  note cell division control protein CDC6b, putative (CDC6b); INVOLVED IN: regulation of cell cycle, DNA replication; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: CDC6 (CELL DIVISION CONTROL 6) (TAIR:AT2G29680.2); Has 1022 Blast hits to 1018 proteins in 250 species: Archae - 232; Bacteria - 0; Metazoa - 319; Fungi - 194; Plants - 67; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT1G07270.1p  transcript_id AT1G07270.1  protein_id AT1G07270.1p  transcript_id AT1G07270.1  
At1g07280	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.1 CDS  gene_syn F22G5.38, F22G5_38  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G29670.1); Has 381 Blast hits to 218 proteins in 33 species: Archae - 4; Bacteria - 98; Metazoa - 1; Fungi - 2; Plants - 229; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G07280.1p  transcript_id AT1G07280.1  protein_id AT1G07280.1p  transcript_id AT1G07280.1  
At1g07280	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.2 CDS  gene_syn F22G5.38, F22G5_38  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G29670.1); Has 381 Blast hits to 218 proteins in 33 species: Archae - 4; Bacteria - 98; Metazoa - 1; Fungi - 2; Plants - 229; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G07280.2p  transcript_id AT1G07280.2  protein_id AT1G07280.2p  transcript_id AT1G07280.2  
At1g07280	chr1:002238505	0.0	W/2238505-2239910,2240739-2240991	AT1G07280.3 CDS  gene_syn F22G5.38, F22G5_38  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT2G29670.1); Has 381 Blast hits to 218 proteins in 33 species: Archae - 4; Bacteria - 98; Metazoa - 1; Fungi - 2; Plants - 229; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G07280.3p  transcript_id AT1G07280.3  protein_id AT1G07280.3p  transcript_id AT1G07280.3  
At1g07290	chr1:002242284	0.0	C/2242284-2242327,2242461-2242558,2242654-2242770,2243107-2243261,2243345-2243442,2243535-2243664,2243745-2243884,2243968-2244160,2244277-2244428	AT1G07290.1 CDS  gene_syn F22G5.37, F22G5_37  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide-sugar transmembrane transporter activity|GO:0005338||ISS  product nucleotide-sugar transmembrane transporter  note nucleotide-sugar transmembrane transporter; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, flower, root, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: GONST1 (Golgi Nucleotide Sugar Transporter 1); GDP-mannose transmembrane transporter/ nucleotide-sugar transmembrane transporter (TAIR:AT2G13650.1); Has 465 Blast hits to 465 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 201; Fungi - 138; Plants - 79; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G07290.1p  transcript_id AT1G07290.1  protein_id AT1G07290.1p  transcript_id AT1G07290.1  
At1g07300	chr1:002245914	0.0	C/2245914-2246300	AT1G07300.1 CDS  gene_syn F22G5.36, F22G5_36  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product josephin protein-related  note josephin protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: JOSL (JOSEPHIN-LIKE PROTEIN) (TAIR:AT2G29640.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07300.1p  transcript_id AT1G07300.1  protein_id AT1G07300.1p  transcript_id AT1G07300.1  
At1g07310	chr1:002247775	0.0	C/2247775-2248833	AT1G07310.1 CDS  gene_syn F22G5.35, F22G5_35  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT5G23950.1); Has 14464 Blast hits to 9550 proteins in 585 species: Archae - 8; Bacteria - 824; Metazoa - 5733; Fungi - 2653; Plants - 3332; Viruses - 448; Other Eukaryotes - 1466 (source: NCBI BLink).  protein_id AT1G07310.1p  transcript_id AT1G07310.1  protein_id AT1G07310.1p  transcript_id AT1G07310.1  
At1g07320	chr1:002249190	0.0	W/2249190-2250021,2250173-2250189	AT1G07320.1 CDS  gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4  gene RPL4  function encodes a plastid ribosomal protein L4  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS  go_component ribosome|GO:0005840||ISS  go_component plastid ribosome|GO:0009547|9461586|IPI  go_process translation|GO:0006412|9461586|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|9461586|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product RPL4; poly(U) binding / structural constituent of ribosome  note RPL4; FUNCTIONS IN: structural constituent of ribosome, poly(U) binding; INVOLVED IN: translation; LOCATED IN: in 10 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 family protein (TAIR:AT2G20060.1); Has 5314 Blast hits to 5314 proteins in 1472 species: Archae - 3; Bacteria - 2934; Metazoa - 100; Fungi - 65; Plants - 60; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).  protein_id AT1G07320.1p  transcript_id AT1G07320.1  protein_id AT1G07320.1p  transcript_id AT1G07320.1  
At1g07320	chr1:002249190	0.0	W/2249190-2250021,2250179-2250189	AT1G07320.2 CDS  gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4  gene RPL4  function encodes a plastid ribosomal protein L4  go_component nucleus|GO:0005634|14617066|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS  go_component ribosome|GO:0005840||ISS  go_component plastid ribosome|GO:0009547|9461586|IPI  go_process translation|GO:0006412|9461586|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|9461586|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product RPL4; poly(U) binding / structural constituent of ribosome  note RPL4; FUNCTIONS IN: structural constituent of ribosome, poly(U) binding; INVOLVED IN: translation; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 family protein (TAIR:AT2G20060.1); Has 5314 Blast hits to 5314 proteins in 1472 species: Archae - 3; Bacteria - 2934; Metazoa - 100; Fungi - 65; Plants - 60; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).  protein_id AT1G07320.2p  transcript_id AT1G07320.2  protein_id AT1G07320.2p  transcript_id AT1G07320.2  
At1g07320	chr1:002249190	0.0	W/2249190-2250025,2250173-2250173	AT1G07320.4 CDS  gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4  gene RPL4  function encodes a plastid ribosomal protein L4  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS  go_component ribosome|GO:0005840||ISS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component plastid ribosome|GO:0009547|9461586|IPI  go_process translation|GO:0006412|9461586|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|9461586|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product RPL4; poly(U) binding / structural constituent of ribosome  note RPL4; FUNCTIONS IN: structural constituent of ribosome, poly(U) binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 family protein (TAIR:AT2G20060.1); Has 5314 Blast hits to 5314 proteins in 1472 species: Archae - 3; Bacteria - 2934; Metazoa - 100; Fungi - 65; Plants - 60; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).  protein_id AT1G07320.4p  transcript_id AT1G07320.4  protein_id AT1G07320.4p  transcript_id AT1G07320.4  
At1g07320	chr1:002249190	0.0	W/2249190-2250026	AT1G07320.3 CDS  gene_syn F22G5.34, F22G5_34, RIBOSOMAL PROTEIN L4, RPL4  gene RPL4  function encodes a plastid ribosomal protein L4  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component plastid large ribosomal subunit|GO:0000311|9461586|TAS  go_component ribosome|GO:0005840||ISS  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component plastid ribosome|GO:0009547|9461586|IPI  go_process translation|GO:0006412|9461586|TAS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735|9461586|ISS  go_function structural constituent of ribosome|GO:0003735||ISS  go_function poly(U) binding|GO:0008266|17511964|IDA  product RPL4; poly(U) binding / structural constituent of ribosome  note RPL4; FUNCTIONS IN: structural constituent of ribosome, poly(U) binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 family protein (TAIR:AT2G20060.1); Has 5314 Blast hits to 5314 proteins in 1472 species: Archae - 3; Bacteria - 2934; Metazoa - 100; Fungi - 65; Plants - 60; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).  protein_id AT1G07320.3p  transcript_id AT1G07320.3  protein_id AT1G07320.3p  transcript_id AT1G07320.3  
At1g07330	chr1:002251131	0.0	W/2251131-2251208,2251413-2252268,2252355-2253115,2253223-2253585	AT1G07330.1 CDS  gene_syn F22G5.33, F22G5_33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 517 Blast hits to 459 proteins in 103 species: Archae - 2; Bacteria - 36; Metazoa - 156; Fungi - 37; Plants - 51; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G07330.1p  transcript_id AT1G07330.1  protein_id AT1G07330.1p  transcript_id AT1G07330.1  
At1g07340	chr1:002254873	0.0	W/2254873-2255005,2255088-2255407,2255570-2256196,2256296-2256712	AT1G07340.1 CDS  gene_syn ATSTP2, F22G5.32, F22G5_32, STP2, SUGAR TRANSPORTER 2  gene ATSTP2  go_component integral to plasma membrane|GO:0005887|10074716|ISS  go_component membrane|GO:0016020||ISS  go_process pollen development|GO:0009555|10074716|TAS  go_process monosaccharide transport|GO:0015749|10074716|TAS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function monosaccharide transmembrane transporter activity|GO:0015145|10074716|IDA  product ATSTP2 (SUGAR TRANSPORTER 2); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sugar:hydrogen symporter  note SUGAR TRANSPORTER 2 (ATSTP2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, monosaccharide transmembrane transporter activity; INVOLVED IN: pollen development, monosaccharide transport; LOCATED IN: integral to plasma membrane, membrane; EXPRESSED IN: leaf whorl, petal, sepal, flower, tetrad of microspores; EXPRESSED DURING: 4 anthesis, F microspore release stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: STP6 (SUGAR TRANSPORTER 6); carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT3G05960.1); Has 13776 Blast hits to 13717 proteins in 1005 species: Archae - 188; Bacteria - 4275; Metazoa - 3015; Fungi - 4403; Plants - 1103; Viruses - 0; Other Eukaryotes - 792 (source: NCBI BLink).  protein_id AT1G07340.1p  transcript_id AT1G07340.1  protein_id AT1G07340.1p  transcript_id AT1G07340.1  
At1g07350	chr1:002257732	0.0	C/2257732-2257906,2257988-2258447,2258539-2258602,2259003-2259152,2259277-2259385,2259486-2259586,2260012-2260101	AT1G07350.1 CDS  gene_syn F22G5.31, F22G5_31  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product transformer serine/arginine-rich ribonucleoprotein, putative  note transformer serine/arginine-rich ribonucleoprotein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT4G35785.2); Has 25544 Blast hits to 16897 proteins in 693 species: Archae - 12; Bacteria - 1110; Metazoa - 16477; Fungi - 2700; Plants - 2768; Viruses - 163; Other Eukaryotes - 2314 (source: NCBI BLink).  protein_id AT1G07350.1p  transcript_id AT1G07350.1  protein_id AT1G07350.1p  transcript_id AT1G07350.1  
At1g07350	chr1:002258816	0.0	C/2258816-2258845,2259003-2259152,2259277-2259385,2259486-2259586	AT1G07350.2 CDS  gene_syn F22G5.31, F22G5_31  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  product transformer serine/arginine-rich ribonucleoprotein, putative  note transformer serine/arginine-rich ribonucleoprotein, putative; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT4G35785.3); Has 9446 Blast hits to 8645 proteins in 528 species: Archae - 6; Bacteria - 859; Metazoa - 5288; Fungi - 914; Plants - 1524; Viruses - 0; Other Eukaryotes - 855 (source: NCBI BLink).  protein_id AT1G07350.2p  transcript_id AT1G07350.2  protein_id AT1G07350.2p  transcript_id AT1G07350.2  
At1g07360	chr1:002260562	0.0	C/2260562-2261408,2261740-2261963,2262085-2262354,2262691-2262795	AT1G07360.1 CDS  gene_syn F22G5.30, F22G5_30  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein  note zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT2G29580.1); Has 15841 Blast hits to 11209 proteins in 616 species: Archae - 12; Bacteria - 933; Metazoa - 6494; Fungi - 2796; Plants - 2983; Viruses - 266; Other Eukaryotes - 2357 (source: NCBI BLink).  protein_id AT1G07360.1p  transcript_id AT1G07360.1  protein_id AT1G07360.1p  transcript_id AT1G07360.1  
At1g07370	chr1:002263204	0.0	W/2263204-2263522,2263715-2263867,2263951-2264048,2264161-2264382	AT1G07370.1 CDS  gene_syn F22G5.29, F22G5_29, PCNA1, PROLIFERATING CELLULAR NUCLEAR ANTIGEN  gene PCNA1  function Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of DNA replication|GO:0006275||ISS  go_process regulation of cell cycle|GO:0051726|12631321|ISS  go_function DNA binding|GO:0003677||ISS  go_function protein binding|GO:0005515|16771839|IPI  go_function DNA polymerase processivity factor activity|GO:0030337||ISS  product PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding  note PROLIFERATING CELLULAR NUCLEAR ANTIGEN (PCNA1); FUNCTIONS IN: protein binding, DNA binding, DNA polymerase processivity factor activity; INVOLVED IN: regulation of cell cycle, regulation of DNA replication; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730); BEST Arabidopsis thaliana protein match is: PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2); DNA binding / DNA polymerase processivity factor (TAIR:AT2G29570.1); Has 1496 Blast hits to 1488 proteins in 340 species: Archae - 256; Bacteria - 0; Metazoa - 266; Fungi - 105; Plants - 119; Viruses - 68; Other Eukaryotes - 682 (source: NCBI BLink).  protein_id AT1G07370.1p  transcript_id AT1G07370.1  protein_id AT1G07370.1p  transcript_id AT1G07370.1  
At1g07380	chr1:002264829	0.0	C/2264829-2265088,2265474-2265768,2265858-2266027,2266113-2266176,2266258-2266383,2266473-2266743,2266855-2267119,2267209-2267553,2267655-2267863,2267972-2268306	AT1G07380.1 CDS  gene_syn F22G5.28, F22G5_28  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function ceramidase activity|GO:0017040||ISS  product ceramidase family protein  note ceramidase family protein; FUNCTIONS IN: ceramidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: ceramidase family protein (TAIR:AT2G38010.1); Has 458 Blast hits to 375 proteins in 133 species: Archae - 0; Bacteria - 160; Metazoa - 157; Fungi - 68; Plants - 30; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G07380.1p  transcript_id AT1G07380.1  protein_id AT1G07380.1p  transcript_id AT1G07380.1  
At1g07390	chr1:002269893	0.0	W/2269893-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2271675-2271736,2271808-2271879,2272022-2272034,2272123-2272191,2272451-2274654	AT1G07390.3 CDS  gene_syn AtRLP1, F22G5.26, F22G5_26, Receptor Like Protein 1  gene AtRLP1  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product protein binding  note Receptor Like Protein 1 (AtRLP1); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP13 (Receptor Like Protein 13); protein binding (TAIR:AT1G74170.1).  protein_id AT1G07390.3p  transcript_id AT1G07390.3  protein_id AT1G07390.3p  transcript_id AT1G07390.3  
At1g07390	chr1:002269893	0.0	W/2269893-2270199,2270577-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2274654	AT1G07390.1 CDS  gene_syn AtRLP1, F22G5.26, F22G5_26, Receptor Like Protein 1  gene AtRLP1  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product protein binding  note Receptor Like Protein 1 (AtRLP1); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP13 (Receptor Like Protein 13); protein binding (TAIR:AT1G74170.1); Has 75962 Blast hits to 20848 proteins in 826 species: Archae - 63; Bacteria - 5379; Metazoa - 28244; Fungi - 1286; Plants - 35488; Viruses - 24; Other Eukaryotes - 5478 (source: NCBI BLink).  protein_id AT1G07390.1p  transcript_id AT1G07390.1  protein_id AT1G07390.1p  transcript_id AT1G07390.1  
At1g07390	chr1:002270633	0.0	W/2270633-2270732,2270832-2270903,2271010-2271084,2271178-2271249,2271342-2271416,2271521-2271595,2272123-2272191,2272451-2274654	AT1G07390.2 CDS  gene_syn AtRLP1, F22G5.26, F22G5_26, Receptor Like Protein 1  gene AtRLP1  go_component cellular_component|GO:0005575||ND  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product protein binding  note Receptor Like Protein 1 (AtRLP1); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP15 (Receptor Like Protein 15); protein binding (TAIR:AT1G74190.1).  protein_id AT1G07390.2p  transcript_id AT1G07390.2  protein_id AT1G07390.2p  transcript_id AT1G07390.2  
At1g07400	chr1:002275148	0.0	W/2275148-2275621	AT1G07400.1 CDS  gene_syn F22G5.25, F22G5_25  go_process response to oxidative stress|GO:0006979|15634198|IEP  go_process response to heat|GO:0009408||ISS  product 17.8 kDa class I heat shock protein (HSP17.8-CI)  note 17.8 kDa class I heat shock protein (HSP17.8-CI); INVOLVED IN: response to oxidative stress, response to heat; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.6 kDa class I heat shock protein (HSP17.6A-CI) (TAIR:AT1G59860.1); Has 4521 Blast hits to 4521 proteins in 968 species: Archae - 130; Bacteria - 2463; Metazoa - 119; Fungi - 227; Plants - 1004; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT1G07400.1p  transcript_id AT1G07400.1  protein_id AT1G07400.1p  transcript_id AT1G07400.1  
At1g07410	chr1:002276270	0.0	W/2276270-2276434,2276675-2277154	AT1G07410.1 CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A2B, ATRAB-A2B, ATRABA2B, F22G5.24, F22G5_24, RAB GTPASE HOMOLOG A2B, RAB-A2B  gene ATRABA2B  go_component plasma membrane|GO:0005886|17644812|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process nucleocytoplasmic transport|GO:0006913||IEA  go_process signal transduction|GO:0007165||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTPase activity|GO:0003924||IEA  go_function protein binding|GO:0005515||IEA  go_function GTP binding|GO:0005525||IEA  go_component endosome|GO:0005768|18239134|IDA  go_component cell plate|GO:0009504|18239134|IDA  go_function GTP binding|GO:0005525||ISS  product ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding  note ARABIDOPSIS RAB GTPASE HOMOLOG A2B (ATRABA2B); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), ADP-ribosylation factor (InterPro:IPR006688), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Ras small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding (TAIR:AT5G59150.1); Has 23212 Blast hits to 23174 proteins in 634 species: Archae - 19; Bacteria - 112; Metazoa - 12895; Fungi - 3006; Plants - 2078; Viruses - 19; Other Eukaryotes - 5083 (source: NCBI BLink).  protein_id AT1G07410.1p  transcript_id AT1G07410.1  protein_id AT1G07410.1p  transcript_id AT1G07410.1  
At1g07420	chr1:002277910	0.0	W/2277910-2277939,2278587-2278724,2278972-2279117,2279258-2279377,2279466-2279678,2279777-2279857,2279961-2280033	AT1G07420.1 CDS  gene_syn ATSMO2, F22G5.23, F22G5_23, SMO2-1, STEROL 4-ALPHA-METHYL-OXIDASE 2, STEROL 4-ALPHA-METHYL-OXIDASE 2-1  gene SMO2-1  function Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI  go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI  product SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase  note STEROL 4-ALPHA-METHYL-OXIDASE 2-1 (SMO2-1); FUNCTIONS IN: 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity, C-4 methylsterol oxidase activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (TAIR:AT2G29390.2); Has 2164 Blast hits to 2161 proteins in 368 species: Archae - 0; Bacteria - 491; Metazoa - 391; Fungi - 452; Plants - 274; Viruses - 2; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT1G07420.1p  transcript_id AT1G07420.1  protein_id AT1G07420.1p  transcript_id AT1G07420.1  
At1g07420	chr1:002278918	0.0	W/2278918-2279117,2279258-2279377,2279466-2279678,2279777-2279857,2279961-2280033	AT1G07420.2 CDS  gene_syn ATSMO2, F22G5.23, F22G5_23, SMO2-1, STEROL 4-ALPHA-METHYL-OXIDASE 2, STEROL 4-ALPHA-METHYL-OXIDASE 2-1  gene SMO2-1  function Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function C-4 methylsterol oxidase activity|GO:0000254|11707264|IGI  go_function 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity|GO:0080065|14653780|IGI  product SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase  note STEROL 4-ALPHA-METHYL-OXIDASE 2-1 (SMO2-1); FUNCTIONS IN: 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity, C-4 methylsterol oxidase activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (TAIR:AT2G29390.3); Has 2143 Blast hits to 2140 proteins in 366 species: Archae - 0; Bacteria - 487; Metazoa - 390; Fungi - 448; Plants - 271; Viruses - 2; Other Eukaryotes - 545 (source: NCBI BLink).  protein_id AT1G07420.2p  transcript_id AT1G07420.2  protein_id AT1G07420.2p  transcript_id AT1G07420.2  
At1g07430	chr1:002281151	0.0	C/2281151-2281663,2281748-2282059,2282153-2282656	AT1G07430.1 CDS  gene_syn F22G5.22, F22G5_22  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G29380.1); Has 4401 Blast hits to 4389 proteins in 274 species: Archae - 0; Bacteria - 82; Metazoa - 1419; Fungi - 539; Plants - 1372; Viruses - 7; Other Eukaryotes - 982 (source: NCBI BLink).  protein_id AT1G07430.1p  transcript_id AT1G07430.1  protein_id AT1G07430.1p  transcript_id AT1G07430.1  
At1g07440	chr1:002286436	0.0	C/2286436-2286624,2286712-2286818,2287011-2287227,2287300-2287507,2287586-2287665	AT1G07440.1 CDS  gene_syn F22G5.39, F22G5_39  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT2G29340.2); Has 82964 Blast hits to 82757 proteins in 2203 species: Archae - 469; Bacteria - 45784; Metazoa - 4525; Fungi - 4011; Plants - 1547; Viruses - 5; Other Eukaryotes - 26623 (source: NCBI BLink).  protein_id AT1G07440.1p  transcript_id AT1G07440.1  protein_id AT1G07440.1p  transcript_id AT1G07440.1  
At1g07440	chr1:002286700	0.0	C/2286700-2286818,2287011-2287227,2287300-2287507,2287586-2287665	AT1G07440.2 CDS  gene_syn F22G5.39, F22G5_39  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT2G29340.3); Has 72868 Blast hits to 72672 proteins in 2161 species: Archae - 439; Bacteria - 42225; Metazoa - 4389; Fungi - 3613; Plants - 1421; Viruses - 2; Other Eukaryotes - 20779 (source: NCBI BLink).  protein_id AT1G07440.2p  transcript_id AT1G07440.2  protein_id AT1G07440.2p  transcript_id AT1G07440.2  
At1g07450	chr1:002288038	0.0	C/2288038-2288223,2288309-2288415,2288500-2288713,2288849-2289056,2289189-2289256	AT1G07450.1 CDS  gene_syn F22G5.20, F22G5_20  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product tropinone reductase, putative / tropine dehydrogenase, putative  note tropinone reductase, putative / tropine dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: TRI (tropinone reductase); binding / catalytic/ oxidoreductase (TAIR:AT2G29330.1); Has 74240 Blast hits to 74143 proteins in 2154 species: Archae - 445; Bacteria - 41494; Metazoa - 3906; Fungi - 3541; Plants - 1477; Viruses - 2; Other Eukaryotes - 23375 (source: NCBI BLink).  protein_id AT1G07450.1p  transcript_id AT1G07450.1  protein_id AT1G07450.1p  transcript_id AT1G07450.1  
At1g07460	chr1:002290201	0.0	W/2290201-2290977	AT1G07460.1 CDS  gene_syn F22G5.19, F22G5_19  go_function sugar binding|GO:0005529||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246||ISS  product legume lectin family protein  note legume lectin family protein; FUNCTIONS IN: carbohydrate binding, sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT2G29220.1); Has 1591 Blast hits to 1578 proteins in 115 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 1566; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G07460.1p  transcript_id AT1G07460.1  protein_id AT1G07460.1p  transcript_id AT1G07460.1  
At1g07470	chr1:002291723	0.0	W/2291723-2291848,2292027-2292191,2292305-2292457,2292540-2292585,2292659-2292717,2292896-2293006,2293336-2293479,2293777-2293837,2293926-2294080,2294171-2294254,2294327-2294350	AT1G07470.1 CDS  gene_syn F22G5.18, F22G5_18  go_component transcription factor TFIIA complex|GO:0005672||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_process transcription|GO:0006350||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcription factor IIA large subunit, putative / TFIIA large subunit, putative  note transcription factor IIA large subunit, putative / TFIIA large subunit, putative; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) (TAIR:AT1G07480.2); Has 561 Blast hits to 467 proteins in 136 species: Archae - 0; Bacteria - 14; Metazoa - 345; Fungi - 107; Plants - 45; Viruses - 6; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G07470.1p  transcript_id AT1G07470.1  protein_id AT1G07470.1p  transcript_id AT1G07470.1  
At1g07473	chr1:002294728	0.0	C/2294728-2295105	AT1G07473.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07476.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07473.1p  transcript_id AT1G07473.1  protein_id AT1G07473.1p  transcript_id AT1G07473.1  
At1g07476	chr1:002295805	0.0	W/2295805-2296353	AT1G07476.1 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07473.1); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07476.1p  transcript_id AT1G07476.1  protein_id AT1G07476.1p  transcript_id AT1G07476.1  
At1g07480	chr1:002296706	0.0	C/2296706-2296729,2296810-2296893,2296983-2297137,2297225-2297285,2297530-2297673,2297826-2297936,2298128-2298186,2298280-2298325,2298481-2298633,2298747-2298911,2299090-2299215	AT1G07480.1 CDS  gene_syn F22G5.14, F22G5_14  go_component transcription factor TFIIA complex|GO:0005672||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_process transcription|GO:0006350||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)  note transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: transcription factor IIA large subunit, putative / TFIIA large subunit, putative (TAIR:AT1G07470.1); Has 582 Blast hits to 492 proteins in 138 species: Archae - 0; Bacteria - 27; Metazoa - 349; Fungi - 106; Plants - 45; Viruses - 9; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G07480.1p  transcript_id AT1G07480.1  protein_id AT1G07480.1p  transcript_id AT1G07480.1  
At1g07480	chr1:002296706	0.0	C/2296706-2296729,2296810-2296893,2296983-2297137,2297225-2297285,2297530-2297673,2297826-2297936,2298128-2298186,2298280-2298325,2298481-2298633,2298747-2298911,2299090-2299215	AT1G07480.2 CDS  gene_syn F22G5.14, F22G5_14  go_component transcription factor TFIIA complex|GO:0005672||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_process transcription|GO:0006350||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)  note transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: transcription factor TFIIA complex; CONTAINS InterPro DOMAIN/s: Transcription factor IIA, alpha/beta subunit (InterPro:IPR004855), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription factor IIA, alpha subunit, N-terminal (InterPro:IPR013028), Transcription factor IIA, helical (InterPro:IPR009083); BEST Arabidopsis thaliana protein match is: transcription factor IIA large subunit, putative / TFIIA large subunit, putative (TAIR:AT1G07470.1); Has 582 Blast hits to 492 proteins in 138 species: Archae - 0; Bacteria - 27; Metazoa - 349; Fungi - 106; Plants - 45; Viruses - 9; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G07480.2p  transcript_id AT1G07480.2  protein_id AT1G07480.2p  transcript_id AT1G07480.2  
At1g07485	chr1:002301505	0.0	W/2301505-2301579,2301665-2301892	AT1G07485.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, embryo, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07485.1p  transcript_id AT1G07485.1  protein_id AT1G07485.1p  transcript_id AT1G07485.1  
At1g07490	chr1:002301526	0.0	C/2301526-2301849	AT1G07490.1 CDS  gene_syn DEVIL 9, DVL9, F22G5.13, F22G5_13, ROTUNDIFOLIA LIKE 3, RTFL3  gene RTFL3  go_component chloroplast|GO:0009507||IEA  go_process shoot development|GO:0048367|14871303|ISS  go_function molecular_function|GO:0003674||ND  product RTFL3 (ROTUNDIFOLIA LIKE 3)  note ROTUNDIFOLIA LIKE 3 (RTFL3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL2 (ROTUNDIFOLIA LIKE 2) (TAIR:AT2G29125.1); Has 5460 Blast hits to 618 proteins in 102 species: Archae - 0; Bacteria - 181; Metazoa - 2194; Fungi - 415; Plants - 106; Viruses - 0; Other Eukaryotes - 2564 (source: NCBI BLink).  protein_id AT1G07490.1p  transcript_id AT1G07490.1  protein_id AT1G07490.1p  transcript_id AT1G07490.1  
At1g07500	chr1:002304766	0.0	C/2304766-2304867,2304909-2305031	AT1G07500.1 CDS  gene_syn F22G5.11, F22G5_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, inflorescence meristem; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07500.1p  transcript_id AT1G07500.1  protein_id AT1G07500.1p  transcript_id AT1G07500.1  
At1g07510	chr1:002305689	0.0	W/2305689-2305739,2305826-2306057,2306153-2306221,2306458-2306591,2306698-2307180,2307281-2308048,2308284-2308511,2308904-2309380	AT1G07510.1 CDS  gene_syn F22G5.10, F22G5_10, FtsH protease 10, ftsh10  gene ftsh10  function encodes an FtsH protease that is localized to the mitochondrion  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process proteolysis|GO:0006508||IEA  go_process protein catabolic process|GO:0030163||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component mitochondrion|GO:0005739|14630971|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_function ATPase activity|GO:0016887||ISS  product ftsh10 (FtsH protease 10); ATP binding / ATPase/ metalloendopeptidase/ nucleoside-triphosphatase/ nucleotide binding / zinc ion binding  note FtsH protease 10 (ftsh10); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: ftsh3 (FtsH protease 3); ATP-dependent peptidase/ ATPase (TAIR:AT2G29080.1); Has 26446 Blast hits to 24893 proteins in 1837 species: Archae - 877; Bacteria - 7859; Metazoa - 3977; Fungi - 2382; Plants - 1713; Viruses - 18; Other Eukaryotes - 9620 (source: NCBI BLink).  protein_id AT1G07510.1p  transcript_id AT1G07510.1  protein_id AT1G07510.1p  transcript_id AT1G07510.1  
At1g07520	chr1:002309718	0.0	C/2309718-2311805	AT1G07520.1 CDS  gene_syn F22G5.41, F22G5_41  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_function transcription factor activity|GO:0003700||ISS  product scarecrow transcription factor family protein  note scarecrow transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT2G29060.1); Has 1303 Blast hits to 1286 proteins in 175 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 0; Plants - 1290; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G07520.1p  transcript_id AT1G07520.1  protein_id AT1G07520.1p  transcript_id AT1G07520.1  
At1g07530	chr1:002313828	0.0	C/2313828-2316137	AT1G07530.1 CDS  gene_syn ARABIDOPSIS THALIANA GRAS (GAI, RGA, SCR) 2, ATGRAS2, F22G5.9, F22G5_9, GRAS (GAI, RGA, SCR) 2, GRAS2, SCARECROW-LIKE 14, SCL14  gene SCL14  function Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm.  go_component nucleus|GO:0005634|18984675|IDA  go_component cytosol|GO:0005829|18984675|IDA  go_process response to xenobiotic stimulus|GO:0009410|18984675|IMP  go_process positive regulation of gene-specific transcription|GO:0043193|18984675|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product SCL14 (SCARECROW-LIKE 14); transcription factor  note SCARECROW-LIKE 14 (SCL14); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to xenobiotic stimulus, positive regulation of gene-specific transcription, regulation of transcription; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow transcription factor family protein (TAIR:AT2G29060.1); Has 1400 Blast hits to 1357 proteins in 187 species: Archae - 0; Bacteria - 12; Metazoa - 27; Fungi - 3; Plants - 1349; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G07530.1p  transcript_id AT1G07530.1  protein_id AT1G07530.1p  transcript_id AT1G07530.1  
At1g07540	chr1:002318433	0.0	C/2318433-2318612,2318692-2318755,2318854-2319120,2319220-2319461,2319550-2319629,2319715-2319789,2319874-2320038,2320129-2320867,2320968-2321048	AT1G07540.1 CDS  gene_syn F22G5.8, F22G5_8, TRF-LIKE 2, TRFL2  gene TRFL2  function Arabidopsis thaliana telomere-binding protein, putative (At1g07540)  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product TRFL2 (TRF-LIKE 2); DNA binding  note TRF-LIKE 2 (TRFL2); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: TRFL1 (TRF-LIKE 1); DNA bending/ DNA binding / telomeric DNA binding (TAIR:AT3G46590.2); Has 198 Blast hits to 194 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 161; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G07540.1p  transcript_id AT1G07540.1  protein_id AT1G07540.1p  transcript_id AT1G07540.1  
At1g07550	chr1:002322709	0.0	C/2322709-2323114,2323229-2323415,2323523-2323588,2323671-2323797,2323904-2324100,2324185-2324330,2324417-2324494,2324588-2324659,2324727-2324798,2324888-2325032,2325108-2325586,2325768-2326305,2326431-2326512	AT1G07550.1 CDS  gene_syn F22G5.7, F22G5_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G14510.1); Has 109121 Blast hits to 83970 proteins in 3052 species: Archae - 56; Bacteria - 7288; Metazoa - 36658; Fungi - 6016; Plants - 44126; Viruses - 346; Other Eukaryotes - 14631 (source: NCBI BLink).  protein_id AT1G07550.1p  transcript_id AT1G07550.1  protein_id AT1G07550.1p  transcript_id AT1G07550.1  
At1g07560	chr1:002327320	0.0	W/2327320-2327404,2327546-2328083,2328172-2328653,2328731-2328875,2328981-2329052,2329190-2329261,2329343-2329408,2329567-2329694,2329784-2329992,2330076-2330202,2330290-2330346,2330429-2330618,2330697-2331096	AT1G07560.1 CDS  gene_syn F22G5.6, F22G5_6  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat protein kinase, putative  note leucine-rich repeat protein kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT3G21340.1); Has 106745 Blast hits to 84902 proteins in 3094 species: Archae - 42; Bacteria - 7441; Metazoa - 36761; Fungi - 6210; Plants - 41389; Viruses - 325; Other Eukaryotes - 14577 (source: NCBI BLink).  protein_id AT1G07560.1p  transcript_id AT1G07560.1  protein_id AT1G07560.1p  transcript_id AT1G07560.1  
At1g07570	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332532,2332614-2332930,2333168-2333210	AT1G07570.1 CDS  gene_syn APK1, APK1A, F22G5.5, F22G5_5  gene APK1A  function Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein serine/threonine kinase activity|GO:0004674|1450380|IDA  go_function kinase activity|GO:0016301||ISS  product APK1A; kinase/ protein serine/threonine kinase  note APK1A; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT2G28930.2); Has 81089 Blast hits to 80215 proteins in 2709 species: Archae - 42; Bacteria - 7100; Metazoa - 36128; Fungi - 6026; Plants - 18119; Viruses - 330; Other Eukaryotes - 13344 (source: NCBI BLink).  protein_id AT1G07570.1p  transcript_id AT1G07570.1  protein_id AT1G07570.1p  transcript_id AT1G07570.1  
At1g07570	chr1:002331369	0.0	C/2331369-2331838,2331923-2332046,2332152-2332294,2332397-2332532,2332614-2332930,2333168-2333210	AT1G07570.2 CDS  gene_syn APK1, APK1A, F22G5.5, F22G5_5  gene APK1A  function Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine kinase activity|GO:0004674|1450380|IDA  go_function kinase activity|GO:0016301||ISS  product APK1A; kinase/ protein serine/threonine kinase  note APK1A; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK1B; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT2G28930.2); Has 81089 Blast hits to 80215 proteins in 2709 species: Archae - 42; Bacteria - 7100; Metazoa - 36128; Fungi - 6026; Plants - 18119; Viruses - 330; Other Eukaryotes - 13344 (source: NCBI BLink).  protein_id AT1G07570.2p  transcript_id AT1G07570.2  protein_id AT1G07570.2p  transcript_id AT1G07570.2  
At1g07580	chr1:002334822	0.0	W/2334822-2334894	AT1G07580.1 tRNA  gene_syn 51945.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: AGC)  transcript_id AT1G07580.1  
At1g07590	chr1:002336649	0.0	C/2336649-2337899,2338128-2338481	AT1G07590.1 CDS  gene_syn F22G5.3, F22G5_3  go_component mitochondrion|GO:0005739||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G15480.1); Has 6623 Blast hits to 3122 proteins in 84 species: Archae - 0; Bacteria - 4; Metazoa - 30; Fungi - 22; Plants - 6377; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).  protein_id AT1G07590.1p  transcript_id AT1G07590.1  protein_id AT1G07590.1p  transcript_id AT1G07590.1  
At1g07600	chr1:002338904	0.0	C/2338904-2338985,2339266-2339321	AT1G07600.1 CDS  gene_syn ATMT-2, ATMT-Q, F22G5.2, LIGHT STRESS-REGULATED 4, LSR4, METALLOTHIONEIN 1, METALLOTHIONEIN 1A, METALLOTHIONEIN 2, METALLOTHIONEIN Q, MT-Q, MT1, MT1A  gene MT1A  function metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage.  go_component cellular_component|GO:0005575||ND  go_process response to high light intensity|GO:0009644|11683875|IEP  go_process response to copper ion|GO:0046688|8061521|IEP  go_process response to copper ion|GO:0046688|8061521|IGI  go_function copper ion binding|GO:0005507|9112777|IDA  go_function metal ion binding|GO:0046872|7612924|TAS  product MT1A (METALLOTHIONEIN 1A); copper ion binding / metal ion binding  note METALLOTHIONEIN 1A (MT1A); FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: response to high light intensity, response to copper ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 333 Blast hits to 264 proteins in 88 species: Archae - 0; Bacteria - 2; Metazoa - 80; Fungi - 14; Plants - 166; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G07600.1p  transcript_id AT1G07600.1  protein_id AT1G07600.1p  transcript_id AT1G07600.1  
At1g07610	chr1:002341603	0.0	W/2341603-2341658,2341784-2341865	AT1G07610.1 CDS  gene_syn F22G5.40, METALLOTHIONEIN 1C, MT1C  gene MT1C  function one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance.  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to copper ion|GO:0046688|7565594|ISS  go_function copper ion binding|GO:0005507|7565594|ISS  product MT1C; copper ion binding  note MT1C; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to copper ion; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 408 Blast hits to 337 proteins in 108 species: Archae - 0; Bacteria - 4; Metazoa - 90; Fungi - 14; Plants - 224; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT1G07610.1p  transcript_id AT1G07610.1  protein_id AT1G07610.1p  transcript_id AT1G07610.1  
At1g07615	chr1:002342277	0.0	C/2342277-2343365,2343459-2343521,2343610-2343692,2343855-2343963,2344063-2344200	AT1G07615.1 CDS  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: GTP1/OBG family protein (TAIR:AT5G18570.1); Has 17848 Blast hits to 14272 proteins in 1576 species: Archae - 415; Bacteria - 9173; Metazoa - 754; Fungi - 485; Plants - 205; Viruses - 2; Other Eukaryotes - 6814 (source: NCBI BLink).  protein_id AT1G07615.1p  transcript_id AT1G07615.1  protein_id AT1G07615.1p  transcript_id AT1G07615.1  
At1g07620	chr1:002344556	0.0	C/2344556-2345067,2345146-2346162,2346245-2346374	AT1G07620.1 CDS  gene_syn F24B9.32, F24B9_32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02390.1); Has 447 Blast hits to 405 proteins in 72 species: Archae - 0; Bacteria - 6; Metazoa - 43; Fungi - 29; Plants - 122; Viruses - 3; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G07620.1p  transcript_id AT1G07620.1  protein_id AT1G07620.1p  transcript_id AT1G07620.1  
At1g07630	chr1:002349189	0.0	W/2349189-2350682,2350772-2350885,2350973-2351237,2351322-2351437	AT1G07630.1 CDS  gene_syn F24B9.31, F24B9_31, PLL5, POL-LIKE 5  gene PLL5  function Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_process leaf development|GO:0048366|16112663|IMP  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PLL5; catalytic/ protein serine/threonine phosphatase  note PLL5; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, leaf development; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: PLL4 (POLTERGEIST LIKE 4); catalytic/ protein serine/threonine phosphatase (TAIR:AT2G28890.1); Has 1836 Blast hits to 1817 proteins in 190 species: Archae - 0; Bacteria - 10; Metazoa - 415; Fungi - 149; Plants - 948; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT1G07630.1p  transcript_id AT1G07630.1  protein_id AT1G07630.1p  transcript_id AT1G07630.1  
At1g07640	chr1:002354707	0.0	C/2354707-2355534	AT1G07640.1 CDS  gene_syn F24B9.30, F24B9_30, OBP2, ZINC FINGER PROTEIN OBP2  gene OBP2  function A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis.  go_component nucleus|GO:0005634|16581911|IDA  go_process response to wounding|GO:0009611|16740150|IEP  go_process response to insect|GO:0009625|16740150|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16740150|IEP  go_process glucosinolate biosynthetic process|GO:0019761|16740150|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product OBP2; DNA binding / transcription factor  note OBP2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, glucosinolate biosynthetic process, response to wounding, regulation of transcription, response to insect; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G28810.1); Has 1152 Blast hits to 1070 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 11; Plants - 617; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).  protein_id AT1G07640.1p  transcript_id AT1G07640.1  protein_id AT1G07640.1p  transcript_id AT1G07640.1  
At1g07640	chr1:002354707	0.0	C/2354707-2355699,2355796-2355798	AT1G07640.2 CDS  gene_syn F24B9.30, F24B9_30, OBP2, ZINC FINGER PROTEIN OBP2  gene OBP2  function A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis.  go_component nucleus|GO:0005634|16581911|IDA  go_process response to wounding|GO:0009611|16740150|IEP  go_process response to insect|GO:0009625|16740150|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16740150|IEP  go_process glucosinolate biosynthetic process|GO:0019761|16740150|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product OBP2; DNA binding / transcription factor  note OBP2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, glucosinolate biosynthetic process, response to wounding, regulation of transcription, response to insect; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G28810.1); Has 1173 Blast hits to 1089 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 16; Plants - 617; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).  protein_id AT1G07640.2p  transcript_id AT1G07640.2  protein_id AT1G07640.2p  transcript_id AT1G07640.2  
At1g07640	chr1:002354707	0.0	C/2354707-2355699,2355986-2356012	AT1G07640.3 CDS  gene_syn F24B9.30, F24B9_30, OBP2, ZINC FINGER PROTEIN OBP2  gene OBP2  function A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis.  go_component nucleus|GO:0005634|16581911|IDA  go_process response to wounding|GO:0009611|16740150|IEP  go_process response to insect|GO:0009625|16740150|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16740150|IEP  go_process glucosinolate biosynthetic process|GO:0019761|16740150|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product OBP2; DNA binding / transcription factor  note OBP2; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, glucosinolate biosynthetic process, response to wounding, regulation of transcription, response to insect; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G28810.1); Has 1178 Blast hits to 1099 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 16; Plants - 619; Viruses - 0; Other Eukaryotes - 484 (source: NCBI BLink).  protein_id AT1G07640.3p  transcript_id AT1G07640.3  protein_id AT1G07640.3p  transcript_id AT1G07640.3  
At1g07650	chr1:002359817	0.0	C/2359817-2360176,2360270-2360420,2360512-2360752,2360841-2361051,2361161-2361279,2361382-2361522,2361617-2361812,2361904-2362298,2362415-2362473,2362630-2362665,2362752-2362820,2362905-2362970,2363039-2363110,2363214-2363285,2363365-2363436,2363541-2363612,2363691-2363762,2363858-2363929,2364093-2364164,2364296-2364367,2364454-2364522,2364620-2364691,2366005-2366185,2366321-2366423	AT1G07650.1 CDS  gene_syn F24B9.29, F24B9_29  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT1G53430.1); Has 130529 Blast hits to 99787 proteins in 3434 species: Archae - 76; Bacteria - 9490; Metazoa - 46107; Fungi - 7763; Plants - 48132; Viruses - 454; Other Eukaryotes - 18507 (source: NCBI BLink).  protein_id AT1G07650.1p  transcript_id AT1G07650.1  protein_id AT1G07650.1p  transcript_id AT1G07650.1  
At1g07645	chr1:002367612	0.0	C/2367612-2367734,2367829-2367991,2368222-2368349	AT1G07645.1 CDS  gene_syn ATDSI-1VOC, DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN  gene ATDSI-1VOC  go_component endomembrane system|GO:0012505||IEA  go_process response to abiotic stimulus|GO:0009628|18791196|IEP  go_function catalytic activity|GO:0003824||ISS  product ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN); catalytic  note DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN (ATDSI-1VOC); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to abiotic stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 442 Blast hits to 442 proteins in 189 species: Archae - 0; Bacteria - 413; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G07645.1p  transcript_id AT1G07645.1  protein_id AT1G07645.1p  transcript_id AT1G07645.1  
At1g07660	chr1:002369212	0.0	W/2369212-2369256,2369308-2369523	AT1G07660.2 CDS  gene_syn F24B9.25  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2700 Blast hits to 2700 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 277; Plants - 356; Viruses - 4; Other Eukaryotes - 497 (source: NCBI BLink).  protein_id AT1G07660.2p  transcript_id AT1G07660.2  protein_id AT1G07660.2p  transcript_id AT1G07660.2  
At1g07660	chr1:002369212	0.0	W/2369212-2369523	AT1G07660.1 CDS  gene_syn F24B9.25  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2713 Blast hits to 2713 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 279; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT1G07660.1p  transcript_id AT1G07660.1  protein_id AT1G07660.1p  transcript_id AT1G07660.1  
At1g07670	chr1:002370305	0.0	C/2370305-2370889,2370968-2371196,2371291-2371400,2371482-2371859,2371947-2372228,2372383-2372504,2372596-2372662,2372784-2374196	AT1G07670.1 CDS  gene_syn F24B9.24, F24B9_24  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  product calcium-transporting ATPase  note calcium-transporting ATPase; FUNCTIONS IN: calcium-transporting ATPase activity; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: guard cell, callus, cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ECA1 (ER-TYPE CA2+-ATPASE 1); calcium-transporting ATPase (TAIR:AT1G07810.1); Has 28836 Blast hits to 19765 proteins in 1902 species: Archae - 663; Bacteria - 17966; Metazoa - 3771; Fungi - 1873; Plants - 1364; Viruses - 3; Other Eukaryotes - 3196 (source: NCBI BLink).  protein_id AT1G07670.1p  transcript_id AT1G07670.1  protein_id AT1G07670.1p  transcript_id AT1G07670.1  
At1g07680	chr1:002376062	0.0	W/2376062-2376131,2376268-2376543,2376881-2376993	AT1G07680.1 CDS  gene_syn F24B9.23, F24B9_23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23903.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07680.1p  transcript_id AT1G07680.1  protein_id AT1G07680.1p  transcript_id AT1G07680.1  
At1g07690	chr1:002378076	0.0	W/2378076-2378170,2378267-2378421,2378543-2378587,2378678-2378854,2378933-2379000	AT1G07690.1 CDS  gene_syn F24B9.22, F24B9_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54950.1); Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07690.1p  transcript_id AT1G07690.1  protein_id AT1G07690.1p  transcript_id AT1G07690.1  
At1g07700	chr1:002380214	0.0	W/2380214-2380231,2380354-2380782,2380871-2380924,2381014-2381127	AT1G07700.1 CDS  gene_syn F24B9.21, F24B9_21  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process cell redox homeostasis|GO:0045454||IEA  product thioredoxin family protein  note thioredoxin family protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATTRX4; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G19730.1); Has 1443 Blast hits to 1443 proteins in 284 species: Archae - 5; Bacteria - 129; Metazoa - 456; Fungi - 206; Plants - 380; Viruses - 3; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT1G07700.1p  transcript_id AT1G07700.1  protein_id AT1G07700.1p  transcript_id AT1G07700.1  
At1g07700	chr1:002380214	0.0	W/2380214-2380231,2380354-2380782,2380871-2380939	AT1G07700.2 CDS  gene_syn F24B9.21, F24B9_21  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  product thioredoxin family protein  note thioredoxin family protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like fold (InterPro:IPR012336); Has 163 Blast hits to 163 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 9; Plants - 86; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G07700.2p  transcript_id AT1G07700.2  protein_id AT1G07700.2p  transcript_id AT1G07700.2  
At1g07700	chr1:002380297	0.0	W/2380297-2380782,2380871-2380924,2381014-2381127	AT1G07700.3 CDS  gene_syn F24B9.21, F24B9_21  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  product thioredoxin family protein  note thioredoxin family protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATTRX4; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G19730.1); Has 1443 Blast hits to 1443 proteins in 284 species: Archae - 5; Bacteria - 129; Metazoa - 456; Fungi - 206; Plants - 380; Viruses - 3; Other Eukaryotes - 264 (source: NCBI BLink).  protein_id AT1G07700.3p  transcript_id AT1G07700.3  protein_id AT1G07700.3p  transcript_id AT1G07700.3  
At1g07705	chr1:002382090	0.0	W/2382090-2382107,2382223-2382331,2382404-2382582,2382682-2382730,2382840-2383049,2383347-2383553,2383642-2383743,2384126-2384214,2384313-2384465,2384572-2384997,2385107-2385159,2385237-2385278,2385570-2385708,2385788-2385856	AT1G07705.2 CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function transcription regulator activity|GO:0030528||ISS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIP2 (VIRE2 INTERACTING PROTEIN2); protein binding / transcription regulator (TAIR:AT5G59710.1); Has 2774 Blast hits to 2106 proteins in 307 species: Archae - 0; Bacteria - 642; Metazoa - 845; Fungi - 346; Plants - 142; Viruses - 8; Other Eukaryotes - 791 (source: NCBI BLink).  protein_id AT1G07705.2p  transcript_id AT1G07705.2  protein_id AT1G07705.2p  transcript_id AT1G07705.2  
At1g07705	chr1:002382090	0.0	W/2382090-2382107,2382223-2382331,2382404-2382582,2382682-2382730,2382840-2383049,2383347-2383553,2383642-2383743,2384126-2384214,2384313-2384465,2384572-2384997,2385107-2385159,2385237-2385282	AT1G07705.1 CDS  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_function transcription regulator activity|GO:0030528||ISS  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIP2 (VIRE2 INTERACTING PROTEIN2); protein binding / transcription regulator (TAIR:AT5G59710.1); Has 2435 Blast hits to 1803 proteins in 294 species: Archae - 0; Bacteria - 644; Metazoa - 707; Fungi - 271; Plants - 116; Viruses - 8; Other Eukaryotes - 689 (source: NCBI BLink).  protein_id AT1G07705.1p  transcript_id AT1G07705.1  protein_id AT1G07705.1p  transcript_id AT1G07705.1  
At1g07702	chr1:002382251	0.0	C/2382251-2382331	AT1G07702.1 snoRNA  gene_syn 51805.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G07702.1  
At1g07710	chr1:002386275	0.0	C/2386275-2387563,2387644-2387986	AT1G07710.1 CDS  gene_syn F24B9.19, F24B9_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT5G60070.1); Has 56680 Blast hits to 23778 proteins in 814 species: Archae - 43; Bacteria - 4322; Metazoa - 27756; Fungi - 4878; Plants - 3044; Viruses - 586; Other Eukaryotes - 16051 (source: NCBI BLink).  protein_id AT1G07710.1p  transcript_id AT1G07710.1  protein_id AT1G07710.1p  transcript_id AT1G07710.1  
At1g07720	chr1:002390970	0.0	C/2390970-2392406	AT1G07720.1 CDS  gene_syn 3-KETOACYL-COA SYNTHASE 3, F24B9.18, F24B9_18, KCS3  gene KCS3  function Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_function catalytic activity|GO:0003824||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_function acyltransferase activity|GO:0008415||ISS  product KCS3 (3-KETOACYL-COA SYNTHASE 3); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 3 (KCS3); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: response to light stimulus, response to cold, response to osmotic stress; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS12 (3-KETOACYL-COA SYNTHASE 12); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G28630.1); Has 1754 Blast hits to 1731 proteins in 457 species: Archae - 0; Bacteria - 757; Metazoa - 0; Fungi - 2; Plants - 850; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT1G07720.1p  transcript_id AT1G07720.1  protein_id AT1G07720.1p  transcript_id AT1G07720.1  
At1g07725	chr1:002395249	0.0	C/2395249-2397096	AT1G07725.1 CDS  gene_syn ATEXO70H6, exocyst subunit EXO70 family protein H6  gene ATEXO70H6  function A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.  go_component exocyst|GO:0000145||IEA  go_process exocytosis|GO:0006887||IEA  go_component exocyst|GO:0000145||ISS  go_process vesicle docking during exocytosis|GO:0006904||ISS  go_function protein binding|GO:0005515||ISS  product ATEXO70H6 (exocyst subunit EXO70 family protein H6); protein binding  note exocyst subunit EXO70 family protein H6 (ATEXO70H6); FUNCTIONS IN: protein binding; INVOLVED IN: exocytosis, vesicle docking during exocytosis; LOCATED IN: exocyst; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: ATEXO70H5 (exocyst subunit EXO70 family protein H5); protein binding (TAIR:AT2G28640.1); Has 533 Blast hits to 531 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 37; Plants - 373; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G07725.1p  transcript_id AT1G07725.1  protein_id AT1G07725.1p  transcript_id AT1G07725.1  
At1g07728	chr1:002395451	0.0	W/2395451-2397341	AT1G07728.2 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G07725  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G07728.2  
At1g07728	chr1:002395461	0.0	W/2395461-2397345	AT1G07728.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G07725  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G07728.1  
At1g07730	chr1:002397527	0.0	C/2397527-2398696	AT1G07730.2 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product disease resistance-responsive family protein  note disease resistance-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein / fibroin-related (TAIR:AT2G28670.1); Has 11492 Blast hits to 5717 proteins in 611 species: Archae - 16; Bacteria - 4392; Metazoa - 2575; Fungi - 900; Plants - 782; Viruses - 53; Other Eukaryotes - 2774 (source: NCBI BLink).  protein_id AT1G07730.2p  transcript_id AT1G07730.2  protein_id AT1G07730.2p  transcript_id AT1G07730.2  
At1g07740	chr1:002399117	0.0	C/2399117-2400496	AT1G07740.1 CDS  gene_syn AT1G07730, F24B9.15, F24B9_15  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G16420.1); Has 17393 Blast hits to 5340 proteins in 166 species: Archae - 2; Bacteria - 16; Metazoa - 507; Fungi - 290; Plants - 15901; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink).  protein_id AT1G07740.1p  transcript_id AT1G07740.1  protein_id AT1G07740.1p  transcript_id AT1G07740.1  
At1g07745	chr1:002400797	0.0	C/2400797-2400853,2400948-2401103,2401188-2401258,2401356-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402458,2402755-2402842	AT1G07745.1 CDS  gene_syn ARABIDOPSIS HOMOLOG OF RAD51 D, ATRAD51D, F24B9.14, F24B9_14, RAD51D, SSN1, SUPPRESOR OF SNI1  gene RAD51D  function Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_process regulation of response to biotic stimulus|GO:0002831|17360504|IMP  go_process DNA repair|GO:0006281|17360504|IMP  go_process DNA repair|GO:0006281||ISS  go_process somatic cell DNA recombination|GO:0016444|17360504|IMP  go_function DNA binding|GO:0003677||ISS  product RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D); ATP binding / DNA binding / DNA-dependent ATPase  note ARABIDOPSIS HOMOLOG OF RAD51 D (RAD51D); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, somatic cell DNA recombination, regulation of response to biotic stimulus; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: RAD51B; recombinase (TAIR:AT2G28560.2); Has 2891 Blast hits to 2891 proteins in 796 species: Archae - 315; Bacteria - 876; Metazoa - 634; Fungi - 300; Plants - 290; Viruses - 2; Other Eukaryotes - 474 (source: NCBI BLink).  protein_id AT1G07745.1p  transcript_id AT1G07745.1  protein_id AT1G07745.1p  transcript_id AT1G07745.1  
At1g07745	chr1:002400797	0.0	C/2400797-2400853,2400948-2401103,2401188-2401258,2401356-2401446,2401544-2401636,2401737-2401871,2402081-2402278,2402379-2402492	AT1G07745.2 CDS  gene_syn ARABIDOPSIS HOMOLOG OF RAD51 D, ATRAD51D, F24B9.14, F24B9_14, RAD51D, SSN1, SUPPRESOR OF SNI1  gene RAD51D  function Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.  go_component endomembrane system|GO:0012505||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA-dependent ATPase activity|GO:0008094||IEA  go_process regulation of response to biotic stimulus|GO:0002831|17360504|IMP  go_process DNA repair|GO:0006281|17360504|IMP  go_process DNA repair|GO:0006281||ISS  go_process somatic cell DNA recombination|GO:0016444|17360504|IMP  go_function DNA binding|GO:0003677||ISS  product RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D); ATP binding / DNA binding / DNA-dependent ATPase  note ARABIDOPSIS HOMOLOG OF RAD51 D (RAD51D); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, somatic cell DNA recombination, regulation of response to biotic stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RecA bacterial DNA recombination (InterPro:IPR001553); BEST Arabidopsis thaliana protein match is: RAD51B; recombinase (TAIR:AT2G28560.2); Has 2886 Blast hits to 2886 proteins in 796 species: Archae - 315; Bacteria - 876; Metazoa - 634; Fungi - 300; Plants - 284; Viruses - 2; Other Eukaryotes - 475 (source: NCBI BLink).  protein_id AT1G07745.2p  transcript_id AT1G07745.2  protein_id AT1G07745.2p  transcript_id AT1G07745.2  
At1g07747	chr1:002403558	0.0	W/2403558-2403845	AT1G07747.1 CDS  function Encodes a Protease inhibitor/seed storage/LTP family protein  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  product unknown protein  note INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G43667.1); Has 199 Blast hits to 196 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07747.1p  transcript_id AT1G07747.1  protein_id AT1G07747.1p  transcript_id AT1G07747.1  
At1g07750	chr1:002404300	0.0	C/2404300-2404453,2404542-2405262,2405668-2405863	AT1G07750.1 CDS  gene_syn F24B9.13, F24B9_13  go_function nutrient reservoir activity|GO:0045735||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nutrient reservoir activity|GO:0045735||ISS  product cupin family protein  note cupin family protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S plant seed storage protein (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: cupin family protein (TAIR:AT2G28680.1); Has 689 Blast hits to 606 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 685; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G07750.1p  transcript_id AT1G07750.1  protein_id AT1G07750.1p  transcript_id AT1G07750.1  
At1g07760	chr1:002406834	0.0	C/2406834-2406905	AT1G07760.1 tRNA  gene_syn 51805.TRNA-HIS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-His (anticodon: GTG)  transcript_id AT1G07760.1  
At1g07770	chr1:002408413	0.0	C/2408413-2408511,2408681-2408841,2408933-2409065	AT1G07770.1 CDS  gene_syn CYTOPLASMIC RIBOSOMAL PROTEIN S15A, F24B9.12, F24B9_12, RPS15A, ribosomal protein s15a  gene RPS15A  function Encodes cytoplasmic ribosomal protein S15a.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component mitochondrion|GO:0005739|11971146|IDA  go_component cytosolic ribosome|GO:0022626|7972526|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS15A (ribosomal protein s15a); structural constituent of ribosome  note ribosomal protein s15a (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15A (RPS15aF) (TAIR:AT5G59850.1); Has 2184 Blast hits to 2184 proteins in 755 species: Archae - 184; Bacteria - 923; Metazoa - 327; Fungi - 129; Plants - 161; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).  protein_id AT1G07770.1p  transcript_id AT1G07770.1  protein_id AT1G07770.1p  transcript_id AT1G07770.1  
At1g07770	chr1:002408413	0.0	C/2408413-2408511,2408681-2408841,2408933-2409065	AT1G07770.2 CDS  gene_syn CYTOPLASMIC RIBOSOMAL PROTEIN S15A, F24B9.12, F24B9_12, RPS15A, ribosomal protein s15a  gene RPS15A  function Encodes cytoplasmic ribosomal protein S15a.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component mitochondrion|GO:0005739|11971146|IDA  go_component cytosolic ribosome|GO:0022626|7972526|ISS  go_component cytosolic small ribosomal subunit|GO:0022627|11598216|ISS  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product RPS15A (ribosomal protein s15a); structural constituent of ribosome  note ribosomal protein s15a (RPS15A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S15A (RPS15aF) (TAIR:AT5G59850.1); Has 2184 Blast hits to 2184 proteins in 755 species: Archae - 184; Bacteria - 923; Metazoa - 327; Fungi - 129; Plants - 161; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).  protein_id AT1G07770.2p  transcript_id AT1G07770.2  protein_id AT1G07770.2p  transcript_id AT1G07770.2  
At1g07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.1 CDS  gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1, TRANSIENT RECEPTOR POTENTIAL 6, TRP6  gene PAI1  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP  product PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase  note PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1 (PAI1); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase (TAIR:AT5G05590.1); Has 3611 Blast hits to 3610 proteins in 1215 species: Archae - 121; Bacteria - 2122; Metazoa - 4; Fungi - 188; Plants - 51; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).  protein_id AT1G07780.1p  transcript_id AT1G07780.1  protein_id AT1G07780.1p  transcript_id AT1G07780.1  
At1g07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.2 CDS  gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1, TRANSIENT RECEPTOR POTENTIAL 6, TRP6  gene PAI1  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP  product PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase  note PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1 (PAI1); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase (TAIR:AT5G05590.1); Has 3611 Blast hits to 3610 proteins in 1215 species: Archae - 121; Bacteria - 2122; Metazoa - 4; Fungi - 188; Plants - 51; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).  protein_id AT1G07780.2p  transcript_id AT1G07780.2  protein_id AT1G07780.2p  transcript_id AT1G07780.2  
At1g07780	chr1:002410352	0.0	C/2410352-2410577,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.3 CDS  gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1, TRANSIENT RECEPTOR POTENTIAL 6, TRP6  gene PAI1  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP  product PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase  note PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1 (PAI1); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase (TAIR:AT5G05590.1); Has 3611 Blast hits to 3610 proteins in 1215 species: Archae - 121; Bacteria - 2122; Metazoa - 4; Fungi - 188; Plants - 51; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).  protein_id AT1G07780.3p  transcript_id AT1G07780.3  protein_id AT1G07780.3p  transcript_id AT1G07780.3  
At1g07780	chr1:002410563	0.0	C/2410563-2410602,2410733-2410896,2410987-2411351,2411479-2411541,2411824-2411833	AT1G07780.4 CDS  gene_syn F24B9.11, F24B9_11, PAI1, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1, TRANSIENT RECEPTOR POTENTIAL 6, TRP6  gene PAI1  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process tryptophan biosynthetic process|GO:0000162|8521489|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IMP  product PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase  note PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1 (PAI1); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2); phosphoribosylanthranilate isomerase (TAIR:AT5G05590.1); Has 2504 Blast hits to 2504 proteins in 948 species: Archae - 19; Bacteria - 1662; Metazoa - 2; Fungi - 180; Plants - 51; Viruses - 0; Other Eukaryotes - 590 (source: NCBI BLink).  protein_id AT1G07780.4p  transcript_id AT1G07780.4  protein_id AT1G07780.4p  transcript_id AT1G07780.4  
At1g07790	chr1:002413049	0.0	W/2413049-2413495	AT1G07790.1 CDS  gene_syn F24B9.10, F24B9_10, HTB1  gene HTB1  function Encodes a histone 2B (H2B) protein.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product HTB1; DNA binding  note HTB1; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTB2; DNA binding (TAIR:AT5G22880.1); Has 2813 Blast hits to 2789 proteins in 302 species: Archae - 0; Bacteria - 49; Metazoa - 1862; Fungi - 169; Plants - 367; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT1G07790.1p  transcript_id AT1G07790.1  protein_id AT1G07790.1p  transcript_id AT1G07790.1  
At1g07795	chr1:002414438	0.0	W/2414438-2414794	AT1G07795.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07795.1p  transcript_id AT1G07795.1  protein_id AT1G07795.1p  transcript_id AT1G07795.1  
At1g07800	chr1:002415041	0.0	W/2415041-2415970	AT1G07800.1 mRNA_TE_gene  pseudo  gene_syn F24B9.35  note Transposable element gene, pseudogene, similar to putative reverse transcriptase., blastp match of 24% identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}  
At1g07810	chr1:002416681	0.0	W/2416681-2418093,2418215-2418281,2418374-2418495,2418647-2418928,2419010-2419387,2419467-2419576,2419677-2419905,2419988-2420572	AT1G07810.1 CDS  gene_syn ACA3, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ATECA1, ECA1, ER-TYPE CA2+-ATPASE, ER-TYPE CA2+-ATPASE 1, F24B9.9, F24B9_9  gene ECA1  function Encodes an ER-type Ca2+-pumping ATPase.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|9238019|IDA  go_component endoplasmic reticulum membrane|GO:0005789|9238019|IDA  go_process calcium ion transport|GO:0006816|9238019|IGI  go_process manganese ion transport|GO:0006828|9238019|IGI  go_process response to manganese ion|GO:0010042|12226493|IMP  go_process response to manganese ion|GO:0010042|9238019|IMP  go_process cellular manganese ion homeostasis|GO:0030026|9238019|IGI  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|9238019|IDA  go_function calcium-transporting ATPase activity|GO:0005388|9238019|IGI  go_function calcium-transporting ATPase activity|GO:0005388||ISS  product ECA1 (ER-TYPE CA2+-ATPASE 1); calcium-transporting ATPase  note ER-TYPE CA2+-ATPASE 1 (ECA1); FUNCTIONS IN: calcium-transporting ATPase activity; INVOLVED IN: manganese ion transport, response to cadmium ion, cellular manganese ion homeostasis, calcium ion transport, response to manganese ion; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: guard cell, callus, cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: calcium-transporting ATPase (TAIR:AT1G07670.1); Has 28946 Blast hits to 19769 proteins in 1905 species: Archae - 653; Bacteria - 18050; Metazoa - 3790; Fungi - 1882; Plants - 1359; Viruses - 3; Other Eukaryotes - 3209 (source: NCBI BLink).  protein_id AT1G07810.1p  transcript_id AT1G07810.1  protein_id AT1G07810.1p  transcript_id AT1G07810.1  
At1g07820	chr1:002421435	0.0	C/2421435-2421746	AT1G07820.1 CDS  gene_syn F24B9.8  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2713 Blast hits to 2713 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 279; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT1G07820.1p  transcript_id AT1G07820.1  protein_id AT1G07820.1p  transcript_id AT1G07820.1  
At1g07820	chr1:002421435	0.0	C/2421435-2421746	AT1G07820.2 CDS  gene_syn F24B9.8  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H4  note histone H4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: histone H4 (TAIR:AT5G59970.1); Has 2713 Blast hits to 2713 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 279; Plants - 355; Viruses - 6; Other Eukaryotes - 507 (source: NCBI BLink).  protein_id AT1G07820.2p  transcript_id AT1G07820.2  protein_id AT1G07820.2p  transcript_id AT1G07820.2  
At1g07830	chr1:002422549	0.0	W/2422549-2422717,2422949-2423106,2423285-2423392	AT1G07830.1 CDS  gene_syn F24B9.7, F24B9_7  go_component intracellular|GO:0005622||IEA  go_component mitochondrion|GO:0005739||IEA  go_component mitochondrial ribosome|GO:0005761||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L29 family protein  note ribosomal protein L29 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, mitochondrial ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L47, mitochondrial (InterPro:IPR010729), Ribosomal protein L29 (InterPro:IPR001854); Has 236 Blast hits to 236 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 80; Plants - 22; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G07830.1p  transcript_id AT1G07830.1  protein_id AT1G07830.1p  transcript_id AT1G07830.1  
At1g07840	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426103,2426192-2426306,2426414-2426425	AT1G07840.1 CDS  gene_syn F24B9.6, F24B9_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product leucine zipper factor-related  note leucine zipper factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: EMB2777 (EMBRYO DEFECTIVE 2777) (TAIR:AT2G43650.1); Has 529 Blast hits to 527 proteins in 149 species: Archae - 0; Bacteria - 20; Metazoa - 239; Fungi - 93; Plants - 45; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G07840.1p  transcript_id AT1G07840.1  protein_id AT1G07840.1p  transcript_id AT1G07840.1  
At1g07840	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426103,2426192-2426306,2426414-2426425	AT1G07840.2 CDS  gene_syn F24B9.6, F24B9_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product leucine zipper factor-related  note leucine zipper factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: EMB2777 (EMBRYO DEFECTIVE 2777) (TAIR:AT2G43650.1); Has 529 Blast hits to 527 proteins in 149 species: Archae - 0; Bacteria - 20; Metazoa - 239; Fungi - 93; Plants - 45; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G07840.2p  transcript_id AT1G07840.2  protein_id AT1G07840.2p  transcript_id AT1G07840.2  
At1g07840	chr1:002424603	0.0	W/2424603-2424646,2424839-2424926,2425169-2425348,2425432-2425611,2425695-2425862,2425952-2426131	AT1G07840.3 CDS  gene_syn F24B9.6, F24B9_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product leucine zipper factor-related  note leucine zipper factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146); BEST Arabidopsis thaliana protein match is: EMB2777 (EMBRYO DEFECTIVE 2777) (TAIR:AT2G43650.1); Has 425 Blast hits to 425 proteins in 142 species: Archae - 0; Bacteria - 16; Metazoa - 207; Fungi - 80; Plants - 37; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT1G07840.3p  transcript_id AT1G07840.3  protein_id AT1G07840.3p  transcript_id AT1G07840.3  
At1g07850	chr1:002426745	0.0	W/2426745-2427301,2427377-2427779,2427893-2428438,2428600-2428719	AT1G07850.1 CDS  gene_syn F24B9.5, F24B9_5  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase, transferring glycosyl groups  note transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: fringe-related protein (TAIR:AT4G23490.1); Has 392 Blast hits to 388 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 84; Plants - 132; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G07850.1p  transcript_id AT1G07850.1  protein_id AT1G07850.1p  transcript_id AT1G07850.1  
At1g07860	chr1:002428942	0.0	C/2428942-2429183,2429266-2429431	AT1G07860.1 CDS  gene_syn F24B9.36, F24B9_36  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07860.1p  transcript_id AT1G07860.1  protein_id AT1G07860.1p  transcript_id AT1G07860.1  
At1g07870	chr1:002429933	0.0	C/2429933-2430241,2430321-2430712,2430818-2431007,2431105-2431343,2431702-2431843	AT1G07870.1 CDS  gene_syn F24B9.4, F24B9_4  go_component plasma membrane|GO:0005886|17644812|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to salt stress, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT2G28590.1); Has 82095 Blast hits to 81092 proteins in 2973 species: Archae - 50; Bacteria - 7578; Metazoa - 35765; Fungi - 6178; Plants - 18436; Viruses - 378; Other Eukaryotes - 13710 (source: NCBI BLink).  protein_id AT1G07870.1p  transcript_id AT1G07870.1  protein_id AT1G07870.1p  transcript_id AT1G07870.1  
At1g07880	chr1:002434193	0.0	C/2434193-2434356,2434438-2434621,2434727-2435059,2435152-2435289,2435359-2435488,2435570-2435712	AT1G07880.2 CDS  gene_syn ATMPK13, F24B9.3, F24B9_3  gene ATMPK13  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK13; MAP kinase/ kinase  note ATMPK13; FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), JNK MAP kinase (InterPro:IPR008351), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4); MAP kinase/ kinase (TAIR:AT4G01370.1); Has 89986 Blast hits to 88926 proteins in 3217 species: Archae - 43; Bacteria - 7260; Metazoa - 39765; Fungi - 8067; Plants - 17009; Viruses - 533; Other Eukaryotes - 17309 (source: NCBI BLink).  protein_id AT1G07880.2p  transcript_id AT1G07880.2  protein_id AT1G07880.2p  transcript_id AT1G07880.2  
At1g07880	chr1:002434706	0.0	C/2434706-2435059,2435152-2435289,2435359-2435488,2435570-2435712	AT1G07880.1 CDS  gene_syn ATMPK13, F24B9.3, F24B9_3  gene ATMPK13  function member of MAP Kinase  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function kinase activity|GO:0016301||ISS  product ATMPK13; MAP kinase/ kinase  note ATMPK13; FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK5 (MAP KINASE 5); MAP kinase/ kinase (TAIR:AT4G11330.1); Has 89064 Blast hits to 88105 proteins in 3206 species: Archae - 39; Bacteria - 7213; Metazoa - 39386; Fungi - 7938; Plants - 16950; Viruses - 524; Other Eukaryotes - 17014 (source: NCBI BLink).  protein_id AT1G07880.1p  transcript_id AT1G07880.1  protein_id AT1G07880.1p  transcript_id AT1G07880.1  
At1g07885	chr1:002436467	0.0	C/2436467-2436493,2436678-2436768,2436955-2436959	AT1G07885.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G07885.1p  transcript_id AT1G07885.1  protein_id AT1G07885.1p  transcript_id AT1G07885.1  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.1 CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane, chloroplast stroma; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.1p  transcript_id AT1G07890.1  protein_id AT1G07890.1p  transcript_id AT1G07890.1  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.2 CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.2p  transcript_id AT1G07890.2  protein_id AT1G07890.2p  transcript_id AT1G07890.2  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.3 CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.3p  transcript_id AT1G07890.3  protein_id AT1G07890.3p  transcript_id AT1G07890.3  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.4 CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.4p  transcript_id AT1G07890.4  protein_id AT1G07890.4p  transcript_id AT1G07890.4  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.5 CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to cadmium ion, response to salt stress, response to heat; LOCATED IN: cytosol, cell wall, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.5p  transcript_id AT1G07890.5  protein_id AT1G07890.5p  transcript_id AT1G07890.5  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.7 CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to salt stress, response to heat; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.7p  transcript_id AT1G07890.7  protein_id AT1G07890.7p  transcript_id AT1G07890.7  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439336,2439420-2439435	AT1G07890.8 CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to salt stress, response to heat; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6498 Blast hits to 5997 proteins in 880 species: Archae - 46; Bacteria - 2022; Metazoa - 2; Fungi - 626; Plants - 2150; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.8p  transcript_id AT1G07890.8  protein_id AT1G07890.8p  transcript_id AT1G07890.8  
At1g07890	chr1:002438005	0.0	W/2438005-2438123,2438211-2438385,2438491-2438556,2438709-2438843,2438935-2439014,2439088-2439190,2439278-2439349	AT1G07890.6 CDS  gene_syn APX1, ASCORBATE PEROXIDASE, ATAPX1, CS1, F24B9.2, F24B9_2, MEE6, ascorbate peroxidase 1, maternal effect embryo arrest 6  gene APX1  function Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cytosol|GO:0005829|8422923|TAS  go_process response to reactive oxygen species|GO:0000302|15608336|IMP  go_process response to heat|GO:0009408|9808745|IEP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function L-ascorbate peroxidase activity|GO:0016688|9291097|TAS  go_function L-ascorbate peroxidase activity|GO:0016688||ISS  product APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase  note ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: embryonic development ending in seed dormancy, response to reactive oxygen species, response to salt stress, response to heat; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: APX2 (ASCORBATE PEROXIDASE 2); L-ascorbate peroxidase (TAIR:AT3G09640.2); Has 6521 Blast hits to 6023 proteins in 880 species: Archae - 46; Bacteria - 2019; Metazoa - 2; Fungi - 626; Plants - 2176; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G07890.6p  transcript_id AT1G07890.6  protein_id AT1G07890.6p  transcript_id AT1G07890.6  
At1g07900	chr1:002442624	0.0	W/2442624-2442860,2443296-2443631	AT1G07900.1 CDS  gene_syn F24B9.1, F24B9_1, LBD1, LOB DOMAIN-CONTAINING PROTEIN 1  gene LBD1  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1)  note LOB DOMAIN-CONTAINING PROTEIN 1 (LBD1); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) (TAIR:AT2G28500.1); Has 594 Blast hits to 591 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 594; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G07900.1p  transcript_id AT1G07900.1  protein_id AT1G07900.1p  transcript_id AT1G07900.1  
At1g07901	chr1:002443971	0.0	C/2443971-2444123	AT1G07901.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G07901.1p  transcript_id AT1G07901.1  protein_id AT1G07901.1p  transcript_id AT1G07901.1  
At1g07910	chr1:002446712	0.0	W/2446712-2447104,2447201-2447251,2447345-2447427,2447844-2447943,2448048-2448126,2448228-2448351,2448702-2448808,2448929-2449057,2449163-2449227,2449344-2449499,2449654-2449814,2449917-2449948,2450208-2450371,2450487-2450566,2450763-2450828,2450986-2451275,2451568-2451675,2451768-2451865,2452044-2452104,2452469-2452545,2452657-2452728,2452807-2452883,2453003-2453083,2453442-2453544,2453698-2453856,2453988-2454386	AT1G07910.1 CDS  gene_syn ARABIDOPSIS THALIANA RNA LIGASE, ATRNL, RNA LIGASE, RNL, T6D22.1, T6D22_1, TRNA LIGASE  gene RNL  function Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains  an N-terminal ligase component and a C-terminal 5 -kinase/2 ,3 -cyclic phosphodiesterase (CPD) component  that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2 -PO4 end for tRNA splicing in vivo.  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|15653639|IDA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|16428247|TAS  go_function RNA ligase (ATP) activity|GO:0003972|16428247|IGI  go_function 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase activity|GO:0004113|16428247|IGI  go_function polynucleotide kinase activity|GO:0051731|16428247|IGI  product RNL (RNA LIGASE); 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase  note RNA LIGASE (RNL); FUNCTIONS IN: polynucleotide kinase activity, RNA ligase (ATP) activity, 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 40 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G07910.1p  transcript_id AT1G07910.1  protein_id AT1G07910.1p  transcript_id AT1G07910.1  
At1g07910	chr1:002446712	0.0	W/2446712-2447104,2447201-2447251,2447345-2447427,2447844-2447943,2448048-2448126,2448228-2448351,2448702-2448808,2448929-2449057,2449163-2449227,2449344-2449499,2449654-2449814,2449917-2449948,2450208-2450371,2450487-2450566,2450763-2450828,2450986-2451275,2451568-2451675,2451768-2451865,2452044-2452104,2452469-2452545,2452657-2452728,2452807-2452883,2453003-2453083,2453442-2453544,2453698-2453856,2453988-2454386	AT1G07910.2 CDS  gene_syn ARABIDOPSIS THALIANA RNA LIGASE, ATRNL, RNA LIGASE, RNL, T6D22.1, T6D22_1, TRNA LIGASE  gene RNL  function Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains  an N-terminal ligase component and a C-terminal 5 -kinase/2 ,3 -cyclic phosphodiesterase (CPD) component  that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2 -PO4 end for tRNA splicing in vivo.  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|15653639|IDA  go_process tRNA splicing, via endonucleolytic cleavage and ligation|GO:0006388|16428247|TAS  go_function RNA ligase (ATP) activity|GO:0003972|16428247|IGI  go_function 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase activity|GO:0004113|16428247|IGI  go_function polynucleotide kinase activity|GO:0051731|16428247|IGI  product RNL (RNA LIGASE); 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase  note RNA LIGASE (RNL); FUNCTIONS IN: polynucleotide kinase activity, RNA ligase (ATP) activity, 2 ,3 -cyclic-nucleotide 3 -phosphodiesterase activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages.  protein_id AT1G07910.2p  transcript_id AT1G07910.2  protein_id AT1G07910.2p  transcript_id AT1G07910.2  
At1g07920	chr1:002455559	0.0	W/2455559-2456020,2456114-2457001	AT1G07920.1 CDS  gene_syn T6D22.2, T6D22_2  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, nucleolus, plasma membrane, chloroplast, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 56800 Blast hits to 56727 proteins in 13736 species: Archae - 656; Bacteria - 18781; Metazoa - 15486; Fungi - 8697; Plants - 1228; Viruses - 3; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT1G07920.1p  transcript_id AT1G07920.1  protein_id AT1G07920.1p  transcript_id AT1G07920.1  
At1g07930	chr1:002459014	0.0	W/2459014-2459475,2459571-2459870,2460102-2460458	AT1G07930.2 CDS  gene_syn T6D22.31  go_process translational elongation|GO:0006414||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: cotyledon, male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 64129 Blast hits to 54772 proteins in 13649 species: Archae - 749; Bacteria - 18471; Metazoa - 20602; Fungi - 10665; Plants - 1525; Viruses - 0; Other Eukaryotes - 12117 (source: NCBI BLink).  protein_id AT1G07930.2p  transcript_id AT1G07930.2  protein_id AT1G07930.2p  transcript_id AT1G07930.2  
At1g07930	chr1:002459014	0.0	W/2459014-2459475,2459571-2460458	AT1G07930.1 CDS  gene_syn T6D22.31  go_component vacuole|GO:0005773|14760709|IDA  go_process translational elongation|GO:0006414||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, vacuole; EXPRESSED IN: cotyledon, male gametophyte, guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 56800 Blast hits to 56727 proteins in 13736 species: Archae - 656; Bacteria - 18781; Metazoa - 15486; Fungi - 8697; Plants - 1228; Viruses - 3; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT1G07930.1p  transcript_id AT1G07930.1  protein_id AT1G07930.1p  transcript_id AT1G07930.1  
At1g07940	chr1:002463350	0.0	C/2463350-2464237,2464331-2464792	AT1G07940.1 CDS  gene_syn T6D22.3  go_component plasma membrane|GO:0005886|15060130|IDA  go_process translational elongation|GO:0006414||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 56800 Blast hits to 56727 proteins in 13736 species: Archae - 656; Bacteria - 18781; Metazoa - 15486; Fungi - 8697; Plants - 1228; Viruses - 3; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT1G07940.1p  transcript_id AT1G07940.1  protein_id AT1G07940.1p  transcript_id AT1G07940.1  
At1g07940	chr1:002463350	0.0	C/2463350-2464237,2464331-2464792	AT1G07940.2 CDS  gene_syn T6D22.3  go_process translational elongation|GO:0006414||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function translation elongation factor activity|GO:0003746||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product elongation factor 1-alpha / EF-1-alpha  note elongation factor 1-alpha / EF-1-alpha; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic and archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 56800 Blast hits to 56727 proteins in 13736 species: Archae - 656; Bacteria - 18781; Metazoa - 15486; Fungi - 8697; Plants - 1228; Viruses - 3; Other Eukaryotes - 11949 (source: NCBI BLink).  protein_id AT1G07940.2p  transcript_id AT1G07940.2  protein_id AT1G07940.2p  transcript_id AT1G07940.2  
At1g07950	chr1:002466061	0.0	C/2466061-2466294,2466640-2466705,2466818-2466982	AT1G07950.1 CDS  gene_syn T6D22.4, T6D22_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product surfeit locus protein 5 family protein / SURF5 family protein  note surfeit locus protein 5 family protein / SURF5 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Surfeit locus 5 (InterPro:IPR009332); BEST Arabidopsis thaliana protein match is: surfeit locus protein 5 family protein / SURF5 family protein (TAIR:AT1G16430.1); Has 181 Blast hits to 181 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G07950.1p  transcript_id AT1G07950.1  protein_id AT1G07950.1p  transcript_id AT1G07950.1  
At1g07960	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.1 CDS  gene_syn ATPDIL5-1, PDI-like 5-1, T6D22.5, T6D22_5  gene ATPDIL5-1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  product ATPDIL5-1 (PDI-like 5-1)  note PDI-like 5-1 (ATPDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase (TAIR:AT2G47470.4); Has 8138 Blast hits to 6543 proteins in 1164 species: Archae - 27; Bacteria - 2367; Metazoa - 2682; Fungi - 612; Plants - 597; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink).  protein_id AT1G07960.1p  transcript_id AT1G07960.1  protein_id AT1G07960.1p  transcript_id AT1G07960.1  
At1g07960	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.2 CDS  gene_syn ATPDIL5-1, PDI-like 5-1, T6D22.5, T6D22_5  gene ATPDIL5-1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  product ATPDIL5-1 (PDI-like 5-1)  note PDI-like 5-1 (ATPDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase (TAIR:AT2G47470.4); Has 8138 Blast hits to 6543 proteins in 1164 species: Archae - 27; Bacteria - 2367; Metazoa - 2682; Fungi - 612; Plants - 597; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink).  protein_id AT1G07960.2p  transcript_id AT1G07960.2  protein_id AT1G07960.2p  transcript_id AT1G07960.2  
At1g07960	chr1:002467681	0.0	W/2467681-2467794,2468305-2468363,2468452-2468627,2468740-2468831	AT1G07960.3 CDS  gene_syn ATPDIL5-1, PDI-like 5-1, T6D22.5, T6D22_5  gene ATPDIL5-1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.  go_component endomembrane system|GO:0012505||IEA  go_process cell redox homeostasis|GO:0045454||IEA  product ATPDIL5-1 (PDI-like 5-1)  note PDI-like 5-1 (ATPDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: UNE5 (UNFERTILIZED EMBRYO SAC 5); protein disulfide isomerase (TAIR:AT2G47470.4); Has 8138 Blast hits to 6543 proteins in 1164 species: Archae - 27; Bacteria - 2367; Metazoa - 2682; Fungi - 612; Plants - 597; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink).  protein_id AT1G07960.3p  transcript_id AT1G07960.3  protein_id AT1G07960.3p  transcript_id AT1G07960.3  
At1g07970	chr1:002469528	0.0	C/2469528-2469668,2469780-2470153,2470232-2470435,2470690-2470888,2471046-2471947,2472041-2472096,2472313-2472518	AT1G07970.1 CDS  gene_syn T6D22.6, T6D22_6  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 164 Blast hits to 163 proteins in 58 species: Archae - 0; Bacteria - 2; Metazoa - 113; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G07970.1p  transcript_id AT1G07970.1  protein_id AT1G07970.1p  transcript_id AT1G07970.1  
At1g07980	chr1:002473523	0.0	C/2473523-2473596,2473684-2473725,2473963-2474047,2474491-2474910	AT1G07980.1 CDS  gene_syn NF-YC10, NUCLEAR FACTOR Y, SUBUNIT C10, T6D22.7, T6D22_7  gene NF-YC10  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C10 (NF-YC10); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); Has 837 Blast hits to 835 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 200; Plants - 185; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G07980.1p  transcript_id AT1G07980.1  protein_id AT1G07980.1p  transcript_id AT1G07980.1  
At1g07985	chr1:002475508	0.0	W/2475508-2475942	AT1G07985.1 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G07985.1p  transcript_id AT1G07985.1  protein_id AT1G07985.1p  transcript_id AT1G07985.1  
At1g07990	chr1:002477413	0.0	W/2477413-2477451,2477676-2477779,2477966-2478052,2478186-2478261,2478388-2478462,2478599-2478652,2478979-2479038,2479123-2479239,2479400-2479494,2479590-2479798,2480178-2480275,2480406-2480509,2480597-2480759,2480920-2481042,2481215-2481297,2481580-2481712,2481796-2481825,2481972-2482042,2482211-2482898	AT1G07990.1 CDS  gene_syn T6D22.8, T6D22_8  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product SIT4 phosphatase-associated family protein  note SIT4 phosphatase-associated family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28360.1); Has 810 Blast hits to 697 proteins in 146 species: Archae - 0; Bacteria - 27; Metazoa - 308; Fungi - 216; Plants - 63; Viruses - 3; Other Eukaryotes - 193 (source: NCBI BLink).  protein_id AT1G07990.1p  transcript_id AT1G07990.1  protein_id AT1G07990.1p  transcript_id AT1G07990.1  
At1g08000	chr1:002483460	0.0	C/2483460-2484125,2484304-2484564	AT1G08000.1 CDS  gene_syn T6D22.9, T6D22_9  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08010.2); Has 872 Blast hits to 857 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 399; Plants - 408; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G08000.1p  transcript_id AT1G08000.1  protein_id AT1G08000.1p  transcript_id AT1G08000.1  
At1g08000	chr1:002483460	0.0	C/2483460-2484125,2484304-2484564	AT1G08000.2 CDS  gene_syn T6D22.9, T6D22_9  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08010.2); Has 872 Blast hits to 857 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 399; Plants - 408; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G08000.2p  transcript_id AT1G08000.2  protein_id AT1G08000.2p  transcript_id AT1G08000.2  
At1g08005	chr1:002485344	0.0	W/2485344-2485511	AT1G08005.1 CDS  product unknown protein  note BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08005.1p  transcript_id AT1G08005.1  protein_id AT1G08005.1p  transcript_id AT1G08005.1  
At1g08010	chr1:002486202	0.0	C/2486202-2486846,2487136-2487402	AT1G08010.1 CDS  gene_syn T6D22.28, T6D22_28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08000.2); Has 927 Blast hits to 903 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 418; Plants - 418; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G08010.1p  transcript_id AT1G08010.1  protein_id AT1G08010.1p  transcript_id AT1G08010.1  
At1g08010	chr1:002486202	0.0	C/2486202-2486846,2487136-2487402	AT1G08010.2 CDS  gene_syn T6D22.28, T6D22_28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product zinc finger (GATA type) family protein  note zinc finger (GATA type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: zinc finger (GATA type) family protein (TAIR:AT1G08000.2); Has 927 Blast hits to 903 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 418; Plants - 418; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G08010.2p  transcript_id AT1G08010.2  protein_id AT1G08010.2p  transcript_id AT1G08010.2  
At1g08030	chr1:002490425	0.0	C/2490425-2490426,2491007-2491157,2491250-2491354,2491434-2491574,2491683-2491968,2492262-2492333,2492419-2492590,2492687-2492741	AT1G08030.1 CDS  gene_syn T6D22.29, T6D22_29  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G08030.1p  transcript_id AT1G08030.1  protein_id AT1G08030.1p  transcript_id AT1G08030.1  
At1g08032	chr1:002494123	0.0	W/2494123-2494126,2494209-2494315	AT1G08032.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G08032.1p  transcript_id AT1G08032.1  protein_id AT1G08032.1p  transcript_id AT1G08032.1  
At1g08035	chr1:002494814	0.0	W/2494814-2495149	AT1G08035.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28330.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08035.1p  transcript_id AT1G08035.1  protein_id AT1G08035.1p  transcript_id AT1G08035.1  
At1g08040	chr1:002495507	0.0	C/2495507-2495602,2495694-2495729,2495821-2495895,2496007-2496060,2496230-2496296,2496399-2496455,2496539-2496652,2496724-2496825,2496930-2497045,2497132-2497215,2497329-2497433,2497562-2497672,2497754-2497865,2497954-2497973	AT1G08040.1 CDS  gene_syn T6D22.12, T6D22_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28310.3); Has 193 Blast hits to 192 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G08040.1p  transcript_id AT1G08040.1  protein_id AT1G08040.1p  transcript_id AT1G08040.1  
At1g08040	chr1:002495507	0.0	C/2495507-2495602,2495694-2495729,2495821-2495895,2496007-2496060,2496230-2496296,2496399-2496455,2496539-2496652,2496724-2496825,2496930-2497045,2497132-2497215,2497329-2497433,2497562-2497672,2497754-2497865,2497954-2497973	AT1G08040.2 CDS  gene_syn T6D22.12, T6D22_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28310.3); Has 193 Blast hits to 192 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G08040.2p  transcript_id AT1G08040.2  protein_id AT1G08040.2p  transcript_id AT1G08040.2  
At1g08050	chr1:002499088	0.0	C/2499088-2500815,2501114-2501311	AT1G08050.1 CDS  gene_syn T6D22.13, T6D22_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60710.1); Has 2554 Blast hits to 2543 proteins in 408 species: Archae - 24; Bacteria - 857; Metazoa - 700; Fungi - 139; Plants - 381; Viruses - 4; Other Eukaryotes - 449 (source: NCBI BLink).  protein_id AT1G08050.1p  transcript_id AT1G08050.1  protein_id AT1G08050.1p  transcript_id AT1G08050.1  
At1g08060	chr1:002501981	0.0	C/2501981-2502504,2502578-2502788,2502871-2503070,2503160-2503337,2503471-2503635,2503719-2503874,2504018-2504173,2504309-2505706,2505907-2506011,2506572-2506813,2506894-2507815,2508109-2508282,2508676-2508921,2509037-2509115,2509239-2510488	AT1G08060.1 CDS  gene_syn MAINTENANCE OF METHYLATION, MOM, MORPHEUS MOLECULE, T6D22.14, T6D22_14  gene MOM  go_component nucleus|GO:0005634|10821279|IDA  go_process chromatin silencing|GO:0006342|10821279|IMP  product MOM (MORPHEUS MOLECULE)  note MORPHEUS MOLECULE (MOM); INVOLVED IN: chromatin silencing; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding / protein binding / zinc ion binding (TAIR:AT5G44800.1); Has 6644 Blast hits to 6032 proteins in 498 species: Archae - 4; Bacteria - 667; Metazoa - 2833; Fungi - 1426; Plants - 458; Viruses - 89; Other Eukaryotes - 1167 (source: NCBI BLink).  protein_id AT1G08060.1p  transcript_id AT1G08060.1  protein_id AT1G08060.1p  transcript_id AT1G08060.1  
At1g08060	chr1:002501981	0.0	C/2501981-2502504,2502578-2502788,2502871-2503070,2503160-2503337,2503471-2503635,2503719-2503874,2504018-2504173,2504309-2505706,2505907-2506011,2506572-2506813,2506894-2507815,2508109-2508282,2508676-2508921,2509037-2509115,2509239-2510488	AT1G08060.2 CDS  gene_syn MAINTENANCE OF METHYLATION, MOM, MORPHEUS MOLECULE, T6D22.14, T6D22_14  gene MOM  go_component nucleus|GO:0005634|10821279|IDA  go_process chromatin silencing|GO:0006342|10821279|IMP  product MOM (MORPHEUS MOLECULE)  note MORPHEUS MOLECULE (MOM); INVOLVED IN: chromatin silencing; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicase/ nucleic acid binding / protein binding / zinc ion binding (TAIR:AT5G44800.1); Has 6644 Blast hits to 6032 proteins in 498 species: Archae - 4; Bacteria - 667; Metazoa - 2833; Fungi - 1426; Plants - 458; Viruses - 89; Other Eukaryotes - 1167 (source: NCBI BLink).  protein_id AT1G08060.2p  transcript_id AT1G08060.2  protein_id AT1G08060.2p  transcript_id AT1G08060.2  
At1g08065	chr1:002511788	0.0	C/2511788-2511877,2512004-2512057,2512151-2512318,2512432-2512534,2512690-2512802,2512889-2513106,2513254-2513341	AT1G08065.1 CDS  gene_syn ACA5, ALPHA CARBONIC ANHYDRASE 5, ATACA5, T6D22.30, T6D22_30  gene ACA5  go_component endomembrane system|GO:0012505||IEA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product ACA5 (ALPHA CARBONIC ANHYDRASE 5); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 5 (ACA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding (TAIR:AT1G08080.1); Has 2423 Blast hits to 2410 proteins in 307 species: Archae - 0; Bacteria - 340; Metazoa - 1745; Fungi - 52; Plants - 163; Viruses - 6; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G08065.1p  transcript_id AT1G08065.1  protein_id AT1G08065.1p  transcript_id AT1G08065.1  
At1g08070	chr1:002514374	0.0	C/2514374-2516599	AT1G08070.1 CDS  gene_syn T6D22.15, T6D22_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G29760.1); Has 15909 Blast hits to 5618 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 215; Fungi - 128; Plants - 15150; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink).  protein_id AT1G08070.1p  transcript_id AT1G08070.1  protein_id AT1G08070.1p  transcript_id AT1G08070.1  
At1g08080	chr1:002517022	0.0	C/2517022-2517096,2517214-2517267,2517351-2517518,2517628-2517730,2517826-2517932,2518154-2518371,2518444-2518546	AT1G08080.1 CDS  gene_syn A. THALIANA ALPHA CARBONIC ANHYDRASE 7, ACA7, ALPHA CARBONIC ANHYDRASE 7, ATACA7, T6D22.16, T6D22_16  gene ACA7  go_component endomembrane system|GO:0012505||IEA  go_process one-carbon compound metabolic process|GO:0006730||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process one-carbon compound metabolic process|GO:0006730||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product ACA7 (ALPHA CARBONIC ANHYDRASE 7); carbonate dehydratase/ zinc ion binding  note ALPHA CARBONIC ANHYDRASE 7 (ACA7); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon compound metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338); BEST Arabidopsis thaliana protein match is: ACA5 (ALPHA CARBONIC ANHYDRASE 5); carbonate dehydratase/ zinc ion binding (TAIR:AT1G08065.1); Has 2490 Blast hits to 2469 proteins in 318 species: Archae - 0; Bacteria - 340; Metazoa - 1796; Fungi - 52; Plants - 162; Viruses - 5; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G08080.1p  transcript_id AT1G08080.1  protein_id AT1G08080.1p  transcript_id AT1G08080.1  
At1g08090	chr1:002524139	0.0	W/2524139-2524948,2525049-2525164,2525254-2525920	AT1G08090.1 CDS  gene_syn ACH1, ATNRT2.1, ATNRT2:1, LATERAL ROOT INITIATION 1, LIN1, NITRATE TRANSPORTER 1, NITRATE TRANSPORTER 2, NITRATE TRANSPORTER 2.1, NITRATE TRANSPORTER 2:1, NRT2, NRT2.1, NRT2;1AT, T6D22.17, T6D22_17, TRANS-MEMBRANE NITRATE TRANSPORTER PROTEIN ATNRT2:1  gene ATNRT2:1  function High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.  go_component membrane|GO:0016020|16157886|ISS  go_process response to nitrate|GO:0010167|16415212|IEP  go_process nitrate transport|GO:0015706|11165253|IMP  go_process nitrate transport|GO:0015706|16415211|IMP  go_process lateral root development|GO:0048527|16157886|IMP  go_process lateral root development|GO:0048527|16415211|IMP  go_function nitrate transmembrane transporter activity|GO:0015112|16157886|TAS  go_function nitrate transmembrane transporter activity|GO:0015112||ISS  product ATNRT2:1 (NITRATE TRANSPORTER 2:1); nitrate transmembrane transporter  note NITRATE TRANSPORTER 2:1 (ATNRT2:1); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport, response to nitrate, lateral root development; LOCATED IN: membrane; EXPRESSED IN: shoot, root; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NRT2.2 (NITRATE TRANSPORTER 2.2); nitrate transmembrane transporter (TAIR:AT1G08100.1); Has 3030 Blast hits to 2929 proteins in 773 species: Archae - 19; Bacteria - 2535; Metazoa - 22; Fungi - 170; Plants - 151; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G08090.1p  transcript_id AT1G08090.1  protein_id AT1G08090.1p  transcript_id AT1G08090.1  
At1g08100	chr1:002527268	0.0	C/2527268-2527916,2528055-2528170,2528275-2529078	AT1G08100.1 CDS  gene_syn ACH2, ATNRT2.2, NITRATE TRANSPORTER 2, NITRATE TRANSPORTER 2.2, NRT2.2, NRT2;2AT, T6D22.18, T6D22_18  gene NRT2.2  function Encodes a high-affinity nitrate transporter.  go_process nitrate transport|GO:0015706|10205909|TAS  go_process nitrate transport|GO:0015706|16415211|IMP  go_process lateral root development|GO:0048527|16415211|IMP  go_function nitrate transmembrane transporter activity|GO:0015112||ISS  product NRT2.2 (NITRATE TRANSPORTER 2.2); nitrate transmembrane transporter  note NITRATE TRANSPORTER 2.2 (NRT2.2); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport, lateral root development; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT2:1 (NITRATE TRANSPORTER 2:1); nitrate transmembrane transporter (TAIR:AT1G08090.1); Has 3115 Blast hits to 2990 proteins in 770 species: Archae - 15; Bacteria - 2605; Metazoa - 27; Fungi - 185; Plants - 151; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G08100.1p  transcript_id AT1G08100.1  protein_id AT1G08100.1p  transcript_id AT1G08100.1  
At1g08105	chr1:002531695	0.0	C/2531695-2534786	AT1G08105.1 mRNA_TE_gene  pseudo  gene_syn T6D22.19, T6D22_19  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.0e-298 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g08110	chr1:002535463	0.0	W/2535463-2535585,2535675-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.4 CDS  gene_syn T6D22.20, T6D22_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product lactoylglutathione lyase, putative / glyoxalase I, putative  note lactoylglutathione lyase, putative / glyoxalase I, putative; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.2); Has 3289 Blast hits to 3095 proteins in 883 species: Archae - 16; Bacteria - 1642; Metazoa - 143; Fungi - 259; Plants - 164; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT1G08110.4p  transcript_id AT1G08110.4  protein_id AT1G08110.4p  transcript_id AT1G08110.4  
At1g08110	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.1 CDS  gene_syn T6D22.20, T6D22_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product lactoylglutathione lyase, putative / glyoxalase I, putative  note lactoylglutathione lyase, putative / glyoxalase I, putative; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.2); Has 3288 Blast hits to 3095 proteins in 883 species: Archae - 16; Bacteria - 1642; Metazoa - 143; Fungi - 259; Plants - 163; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT1G08110.1p  transcript_id AT1G08110.1  protein_id AT1G08110.1p  transcript_id AT1G08110.1  
At1g08110	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.2 CDS  gene_syn T6D22.20, T6D22_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product lactoylglutathione lyase, putative / glyoxalase I, putative  note lactoylglutathione lyase, putative / glyoxalase I, putative; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.2); Has 3288 Blast hits to 3095 proteins in 883 species: Archae - 16; Bacteria - 1642; Metazoa - 143; Fungi - 259; Plants - 163; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT1G08110.2p  transcript_id AT1G08110.2  protein_id AT1G08110.2p  transcript_id AT1G08110.2  
At1g08110	chr1:002535702	0.0	W/2535702-2535794,2536396-2536457,2536567-2536627,2536877-2536956,2537039-2537109,2537330-2537419,2537530-2537630	AT1G08110.3 CDS  gene_syn T6D22.20, T6D22_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  product lactoylglutathione lyase, putative / glyoxalase I, putative  note lactoylglutathione lyase, putative / glyoxalase I, putative; FUNCTIONS IN: calmodulin binding, lactoylglutathione lyase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.2); Has 3288 Blast hits to 3095 proteins in 883 species: Archae - 16; Bacteria - 1642; Metazoa - 143; Fungi - 259; Plants - 163; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink).  protein_id AT1G08110.3p  transcript_id AT1G08110.3  protein_id AT1G08110.3p  transcript_id AT1G08110.3  
At1g08115	chr1:002538076	0.0	C/2538076-2538237	AT1G08115.1 snRNA  gene_syn 52201.SNRNA00001  function U1A small nuclear RNA  go_component snRNP U1|GO:0005685||TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398||TAS  product snRNA  note gi|22293581|emb|AJ505685.1|ATH505685 Arabidopsis putative U1a snRNA (U1asnRNA gene), 5  end incomplete, At5g05684  transcript_id AT1G08115.1  
At1g08120	chr1:002538678	0.0	W/2538678-2538941	AT1G08120.1 CDS  gene_syn T6D22.21, T6D22_21  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / catalytic/ protein kinase (TAIR:AT5G26110.1); Has 380 Blast hits to 380 proteins in 166 species: Archae - 115; Bacteria - 0; Metazoa - 110; Fungi - 39; Plants - 20; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G08120.1p  transcript_id AT1G08120.1  protein_id AT1G08120.1p  transcript_id AT1G08120.1  
At1g08125	chr1:002539748	0.0	C/2539748-2539759,2539852-2540163,2540237-2540329,2540410-2540484,2540588-2540685,2540881-2540997,2541116-2541209,2541656-2541721,2541796-2541862,2542217-2542230	AT1G08125.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73320.1); Has 986 Blast hits to 984 proteins in 169 species: Archae - 0; Bacteria - 58; Metazoa - 387; Fungi - 270; Plants - 163; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G08125.1p  transcript_id AT1G08125.1  protein_id AT1G08125.1p  transcript_id AT1G08125.1  
At1g08130	chr1:002542913	0.0	C/2542913-2542981,2543097-2543174,2543277-2543354,2543460-2543516,2543595-2543668,2543769-2543840,2543920-2543981,2544060-2544161,2544745-2544857,2544964-2545095,2545554-2545641,2545720-2545814,2545909-2546139,2546370-2546486,2546563-2546664,2546793-2546909,2547030-2547815	AT1G08130.1 CDS  gene_syn ARABIDOPSIS THALIANA DNA LIGASE 1, ATLIG1, T6D22.23  gene ATLIG1  function Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5  untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.  go_process DNA replication|GO:0006260||IEA  go_process DNA repair|GO:0006281||IEA  go_process DNA recombination|GO:0006310||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA ligase (ATP) activity|GO:0003910||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|16790030|IDA  go_component mitochondrion|GO:0005739|16790030|IDA  go_function DNA ligase (ATP) activity|GO:0003910||ISS  go_function ATP binding|GO:0005524||ISS  product ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1); ATP binding / DNA binding / DNA ligase (ATP)  note ARABIDOPSIS THALIANA DNA LIGASE 1 (ATLIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977); BEST Arabidopsis thaliana protein match is: ATP dependent DNA ligase family protein (TAIR:AT1G49250.1); Has 2509 Blast hits to 2484 proteins in 599 species: Archae - 187; Bacteria - 920; Metazoa - 320; Fungi - 284; Plants - 48; Viruses - 150; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT1G08130.1p  transcript_id AT1G08130.1  protein_id AT1G08130.1p  transcript_id AT1G08130.1  
At1g08135	chr1:002548819	0.0	C/2548819-2549250,2549338-2549991,2550085-2551473	AT1G08135.1 CDS  gene_syn ATCHX6B, CATION/H+ EXCHANGER 6B, CHX6B  gene CHX6B  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  product CHX6B (CATION/H+ EXCHANGER 6B); monovalent cation:proton antiporter  note CATION/H+ EXCHANGER 6B (CHX6B); FUNCTIONS IN: monovalent cation:proton antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX6A (CATION/H+ EXCHANGER 6A); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G08140.1); Has 679 Blast hits to 671 proteins in 225 species: Archae - 47; Bacteria - 315; Metazoa - 0; Fungi - 76; Plants - 223; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G08135.1p  transcript_id AT1G08135.1  protein_id AT1G08135.1p  transcript_id AT1G08135.1  
At1g08140	chr1:002552206	0.0	C/2552206-2552700,2552924-2553586,2553681-2554700,2554796-2555074	AT1G08140.1 CDS  gene_syn ATCHX6A, CATION/H+ EXCHANGER 6A, CHX6A  gene ATCHX6A  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX6A (CATION/H+ EXCHANGER 6A); monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note CATION/H+ EXCHANGER 6A (ATCHX6A); FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX5; monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G08150.1); Has 756 Blast hits to 745 proteins in 249 species: Archae - 39; Bacteria - 362; Metazoa - 0; Fungi - 76; Plants - 231; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G08140.1p  transcript_id AT1G08140.1  protein_id AT1G08140.1p  transcript_id AT1G08140.1  
At1g08150	chr1:002556343	0.0	C/2556343-2556807,2556907-2557566,2557671-2558690,2558772-2559074	AT1G08150.1 CDS  gene_syn ATCHX5, CATION/H+ EXCHANGER 5, CHX5, T6D22.24  gene ATCHX5  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX5; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX5; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX6A (CATION/H+ EXCHANGER 6A); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G08140.1); Has 1344 Blast hits to 1333 proteins in 428 species: Archae - 96; Bacteria - 894; Metazoa - 0; Fungi - 79; Plants - 230; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G08150.1p  transcript_id AT1G08150.1  protein_id AT1G08150.1p  transcript_id AT1G08150.1  
At1g08160	chr1:002559672	0.0	C/2559672-2560337	AT1G08160.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product harpin-induced protein-related / HIN1-related / harpin-responsive protein-related  note harpin-induced protein-related / HIN1-related / harpin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT5G22870.1); Has 400 Blast hits to 400 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08160.1p  transcript_id AT1G08160.1  protein_id AT1G08160.1p  transcript_id AT1G08160.1  
At1g08165	chr1:002561913	0.0	C/2561913-2561963,2562056-2562148	AT1G08165.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08165.1p  transcript_id AT1G08165.1  protein_id AT1G08165.1p  transcript_id AT1G08165.1  
At1g08170	chr1:002562941	0.0	C/2562941-2563672	AT1G08170.1 CDS  gene_syn T6D22.26  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H2B family protein  note histone H2B family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: HTB4; DNA binding (TAIR:AT5G59910.1); Has 2843 Blast hits to 2827 proteins in 285 species: Archae - 0; Bacteria - 25; Metazoa - 1932; Fungi - 199; Plants - 365; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G08170.1p  transcript_id AT1G08170.1  protein_id AT1G08170.1p  transcript_id AT1G08170.1  
At1g08180	chr1:002564741	0.0	C/2564741-2565076	AT1G08180.1 CDS  gene_syn T23G18.4, T23G18_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02420.1); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08180.1p  transcript_id AT1G08180.1  protein_id AT1G08180.1p  transcript_id AT1G08180.1  
At1g08190	chr1:002567652	0.0	W/2567652-2567921,2568161-2568433,2568512-2568691,2568788-2569045,2569148-2569280,2569369-2569459,2569556-2569658,2570019-2570122,2570208-2570301,2570473-2570628,2570708-2570770,2570878-2570943,2571265-2571492,2571584-2571661,2571750-2571869,2571998-2572078,2572192-2572277,2572496-2572577,2572666-2573142	AT1G08190.1 CDS  gene_syn T23G18.5, T23G18_5  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function nucleotide binding|GO:0000166||ISS  product vacuolar assembly protein, putative (VPS41)  note vacuolar assembly protein, putative (VPS41); FUNCTIONS IN: protein binding, binding, nucleotide binding, zinc ion binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat (InterPro:IPR001680), Vacuolar protein sorting-associated protein 41 (InterPro:IPR016902), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); Has 18653 Blast hits to 4150 proteins in 294 species: Archae - 4; Bacteria - 280; Metazoa - 13631; Fungi - 995; Plants - 521; Viruses - 352; Other Eukaryotes - 2870 (source: NCBI BLink).  protein_id AT1G08190.1p  transcript_id AT1G08190.1  protein_id AT1G08190.1p  transcript_id AT1G08190.1  
At1g08200	chr1:002574259	0.0	C/2574259-2574371,2574458-2574593,2574687-2574779,2574876-2574977,2575067-2575200,2575282-2575396,2575862-2575969,2576094-2576186,2576334-2576609	AT1G08200.1 CDS  gene_syn AXS2, T23G18.6, T23G18_6, UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2  gene AXS2  function Encodes a putative UDP-D-apiose/UPD-D-xylose synthetase.  go_component apoplast|GO:0048046|18538804|IDA  go_component cytoplasm|GO:0005737|12969423|NAS  go_process nucleotide-sugar biosynthetic process|GO:0009226|12969423|ISS  go_function UDP-glucuronate decarboxylase activity|GO:0048040|12969423|ISS  product AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2); UDP-glucuronate decarboxylase  note UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2 (AXS2); FUNCTIONS IN: UDP-glucuronate decarboxylase activity; INVOLVED IN: nucleotide-sugar biosynthetic process; LOCATED IN: apoplast, cytoplasm; EXPRESSED IN: fruit, guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXS1 (UDP-D-apiose/UDP-D-xylose synthase 1); NAD or NADH binding / UDP-glucuronate decarboxylase (TAIR:AT2G27860.1); Has 12467 Blast hits to 12460 proteins in 1495 species: Archae - 286; Bacteria - 6457; Metazoa - 227; Fungi - 54; Plants - 643; Viruses - 8; Other Eukaryotes - 4792 (source: NCBI BLink).  protein_id AT1G08200.1p  transcript_id AT1G08200.1  protein_id AT1G08200.1p  transcript_id AT1G08200.1  
At1g08210	chr1:002577119	0.0	C/2577119-2577279,2577357-2577428,2577510-2577576,2577864-2577957,2578040-2578113,2578315-2578477,2578865-2579092,2579434-2579678,2579819-2579948,2580337-2580581	AT1G08210.1 CDS  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT5G22850.1); Has 3530 Blast hits to 3512 proteins in 308 species: Archae - 0; Bacteria - 0; Metazoa - 1402; Fungi - 712; Plants - 1209; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT1G08210.1p  transcript_id AT1G08210.1  protein_id AT1G08210.1p  transcript_id AT1G08210.1  
At1g08220	chr1:002581574	0.0	C/2581574-2581691,2581788-2581963,2582087-2582158,2582370-2582558,2582797-2582850	AT1G08220.2 CDS  gene_syn T23G18.8, T23G18_8  go_component mitochondrial inner membrane|GO:0005743||IEA  go_process mitochondrial proton-transporting ATP synthase complex assembly|GO:0033615||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 94 Blast hits to 94 proteins in 44 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 57; Plants - 15; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G08220.2p  transcript_id AT1G08220.2  protein_id AT1G08220.2p  transcript_id AT1G08220.2  
At1g08220	chr1:002581574	0.0	C/2581574-2581691,2581788-2581963,2582087-2582158,2582370-2582558,2582797-2582860,2582998-2583038,2583124-2583288	AT1G08220.1 CDS  gene_syn T23G18.8, T23G18_8  go_component mitochondrial inner membrane|GO:0005743||IEA  go_process mitochondrial proton-transporting ATP synthase complex assembly|GO:0033615||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 100 Blast hits to 100 proteins in 48 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 63; Plants - 15; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G08220.1p  transcript_id AT1G08220.1  protein_id AT1G08220.1p  transcript_id AT1G08220.1  
At1g08230	chr1:002583715	0.0	C/2583715-2584095,2584203-2584442,2584580-2584710,2584800-2585084,2586289-2586519,2586613-2586700	AT1G08230.2 CDS  product amino acid transporter family protein  note amino acid transporter family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid transporter family protein (TAIR:AT5G41800.1); Has 1756 Blast hits to 1754 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 500; Fungi - 204; Plants - 790; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT1G08230.2p  transcript_id AT1G08230.2  protein_id AT1G08230.2p  transcript_id AT1G08230.2  
At1g08240	chr1:002588525	0.0	W/2588525-2588596	AT1G08240.1 tRNA  gene_syn 51687.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT1G08240.1  
At1g08250	chr1:002588994	0.0	C/2588994-2590235	AT1G08250.1 CDS  gene_syn ADT6, T23G18.10, T23G18_10, arogenate dehydratase 6  gene ADT6  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_process L-phenylalanine biosynthetic process|GO:0009094||IEA  go_component chloroplast|GO:0009507|19136569|IDA  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product ADT6 (arogenate dehydratase 6); arogenate dehydratase/ prephenate dehydratase  note arogenate dehydratase 6 (ADT6); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: PD1 (PREPHENATE DEHYDRATASE 1); arogenate dehydratase/ prephenate dehydratase (TAIR:AT2G27820.1); Has 4937 Blast hits to 4937 proteins in 1195 species: Archae - 120; Bacteria - 2080; Metazoa - 2; Fungi - 70; Plants - 134; Viruses - 0; Other Eukaryotes - 2531 (source: NCBI BLink).  protein_id AT1G08250.1p  transcript_id AT1G08250.1  protein_id AT1G08250.1p  transcript_id AT1G08250.1  
At1g08260	chr1:002590944	0.0	W/2590944-2591102,2591317-2591382,2591505-2591564,2591661-2591756,2592182-2592342,2592499-2592587,2592665-2592882,2593253-2593339,2593423-2593557,2594093-2594215,2594326-2594409,2594744-2594908,2594993-2595115,2595430-2595543,2595966-2596070,2596267-2596385,2596475-2596619,2596694-2596788,2596944-2597049,2597132-2597211,2597308-2597484,2597689-2597773,2597919-2597999,2598083-2598226,2598769-2598864,2599010-2599210,2599631-2599685,2599765-2599907,2599997-2600394,2600538-2600667,2600749-2600952,2601023-2601097,2601605-2601795,2602097-2602277,2602358-2602422,2602759-2602891,2602993-2603094,2603180-2603263,2603515-2603589,2603718-2603777,2603849-2604111,2604186-2604234,2604533-2604693,2604792-2604858,2605178-2605279,2605394-2605513,2605601-2605789,2606079-2606185,2606523-2606892	AT1G08260.2 CDS  gene_syn ABA OVERLY SENSITIVE 4, ABO4, EMB2284, EMB529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 529, POL2A, T23G18.21, T23G18_21, TIL1, TILTED 1  gene TIL1  function Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.  go_component apoplast|GO:0048046|18538804|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component epsilon DNA polymerase complex|GO:0008622|16212602|IPI  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process positive regulation of S phase of mitotic cell cycle|GO:0045750|16278345|IMP  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product TIL1 (TILTED 1); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding  note EMBRYO DEFECTIVE 529 (EMB529); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy, positive regulation of S phase of mitotic cell cycle; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1744 (InterPro:IPR013697), DNA-directed DNA polymerase, family B, exonuclease (InterPro:IPR006133), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: TIL2 (TILTED 2); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT2G27120.1); Has 1567 Blast hits to 1383 proteins in 478 species: Archae - 273; Bacteria - 415; Metazoa - 252; Fungi - 213; Plants - 29; Viruses - 61; Other Eukaryotes - 324 (source: NCBI BLink).  protein_id AT1G08260.2p  transcript_id AT1G08260.2  protein_id AT1G08260.2p  transcript_id AT1G08260.2  
At1g08260	chr1:002590944	0.0	W/2590944-2591102,2591317-2591382,2591505-2591564,2591661-2591756,2592182-2592342,2592499-2592587,2592665-2592891,2593253-2593339,2593423-2593557,2594093-2594215,2594326-2594409,2594744-2594930,2594988-2595115,2595430-2595543,2595966-2596085,2596267-2596385,2596475-2596619,2596694-2596788,2596944-2597049,2597132-2597211,2597308-2597484,2597689-2597773,2597919-2597999,2598083-2598226,2598769-2598887,2598967-2599210,2599631-2599685,2599765-2599907,2599997-2600394,2600538-2600676,2600749-2600946,2601023-2601097,2601605-2601795,2602097-2602277,2602358-2602422,2602759-2602891,2602993-2603094,2603180-2603263,2603515-2603589,2603718-2603777,2603849-2604111,2604186-2604234,2604533-2604790,2605178-2605513,2605601-2605789,2605899-2606006,2606079-2606185,2606523-2606892	AT1G08260.1 CDS  gene_syn ABA OVERLY SENSITIVE 4, ABO4, EMB2284, EMB529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 529, POL2A, T23G18.21, T23G18_21, TIL1, TILTED 1  gene TIL1  function Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.  go_component apoplast|GO:0048046|18538804|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component epsilon DNA polymerase complex|GO:0008622|16212602|IPI  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process positive regulation of S phase of mitotic cell cycle|GO:0045750|16278345|IMP  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product TIL1 (TILTED 1); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding  note TILTED 1 (TIL1); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: embryonic development ending in seed dormancy, positive regulation of S phase of mitotic cell cycle; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1744 (InterPro:IPR013697), DNA-directed DNA polymerase, family B, exonuclease (InterPro:IPR006133), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: TIL2 (TILTED 2); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT2G27120.1); Has 1471 Blast hits to 1240 proteins in 445 species: Archae - 242; Bacteria - 367; Metazoa - 283; Fungi - 195; Plants - 29; Viruses - 51; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT1G08260.1p  transcript_id AT1G08260.1  protein_id AT1G08260.1p  transcript_id AT1G08260.1  
At1g08270	chr1:002606848	0.0	C/2606848-2606885,2606977-2607337	AT1G08270.2 CDS  gene_syn T23G18.12, T23G18_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT2G27600.1); Has 818 Blast hits to 818 proteins in 195 species: Archae - 70; Bacteria - 0; Metazoa - 385; Fungi - 107; Plants - 112; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT1G08270.2p  transcript_id AT1G08270.2  protein_id AT1G08270.2p  transcript_id AT1G08270.2  
At1g08270	chr1:002606957	0.0	C/2606957-2607337	AT1G08270.1 CDS  gene_syn T23G18.12, T23G18_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (TAIR:AT2G27600.1); Has 807 Blast hits to 807 proteins in 179 species: Archae - 25; Bacteria - 0; Metazoa - 434; Fungi - 97; Plants - 114; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G08270.1p  transcript_id AT1G08270.1  protein_id AT1G08270.1p  transcript_id AT1G08270.1  
At1g08280	chr1:002608408	0.0	W/2608408-2609604	AT1G08280.1 CDS  gene_syn T23G18.14, T23G18_14  go_component endomembrane system|GO:0012505||IEA  go_component integral to Golgi membrane|GO:0030173||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function sialyltransferase activity|GO:0008373||IEA  go_component membrane|GO:0016020||ISS  go_function sialyltransferase activity|GO:0008373||ISS  product glycosyl transferase family 29 protein / sialyltransferase family protein  note glycosyl transferase family 29 protein / sialyltransferase family protein; FUNCTIONS IN: sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, integral to Golgi membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Sialyltransferase (InterPro:IPR012163), Glycosyl transferase, family 29 (InterPro:IPR001675); Has 1982 Blast hits to 1970 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 1819; Fungi - 0; Plants - 92; Viruses - 14; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G08280.1p  transcript_id AT1G08280.1  protein_id AT1G08280.1p  transcript_id AT1G08280.1  
At1g08290	chr1:002610680	0.0	C/2610680-2611105,2612593-2613180	AT1G08290.1 CDS  gene_syn T23G18.15, T23G18_15  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) protein (WIP3)  note zinc finger (C2H2 type) protein (WIP3); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G57670.1); Has 34395 Blast hits to 14992 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 33070; Fungi - 69; Plants - 379; Viruses - 0; Other Eukaryotes - 877 (source: NCBI BLink).  protein_id AT1G08290.1p  transcript_id AT1G08290.1  protein_id AT1G08290.1p  transcript_id AT1G08290.1  
At1g08300	chr1:002614774	0.0	W/2614774-2614904,2615003-2615426,2615518-2615855,2616035-2616548,2616699-2616812,2617757-2618350,2618615-2618652,2618736-2618823	AT1G08300.1 CDS  gene_syn T23G18.16, T23G18_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT4G13750.1); Has 55 Blast hits to 51 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G08300.1p  transcript_id AT1G08300.1  protein_id AT1G08300.1p  transcript_id AT1G08300.1  
At1g08310	chr1:002619134	0.0	W/2619134-2619292,2619397-2619617,2619691-2619955,2620027-2620338	AT1G08310.2 CDS  gene_syn T23G18.18, T23G18_18  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44510.1); Has 692 Blast hits to 691 proteins in 183 species: Archae - 0; Bacteria - 339; Metazoa - 55; Fungi - 17; Plants - 191; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G08310.2p  transcript_id AT1G08310.2  protein_id AT1G08310.2p  transcript_id AT1G08310.2  
At1g08310	chr1:002619134	0.0	W/2619134-2619292,2619406-2619617,2619691-2619955,2620027-2620338	AT1G08310.1 CDS  gene_syn T23G18.18, T23G18_18  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44510.1); Has 686 Blast hits to 685 proteins in 202 species: Archae - 2; Bacteria - 342; Metazoa - 54; Fungi - 21; Plants - 193; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G08310.1p  transcript_id AT1G08310.1  protein_id AT1G08310.1p  transcript_id AT1G08310.1  
At1g08315	chr1:002620500	0.0	C/2620500-2621477	AT1G08315.1 CDS  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / ubiquitin-protein ligase (TAIR:AT2G23140.1); Has 609 Blast hits to 606 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 6; Plants - 565; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G08315.1p  transcript_id AT1G08315.1  protein_id AT1G08315.1p  transcript_id AT1G08315.1  
At1g08320	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625725	AT1G08320.2 CDS  gene_syn T23G18.22  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT5G06839.1); Has 567 Blast hits to 566 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 9; Plants - 505; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G08320.2p  transcript_id AT1G08320.2  protein_id AT1G08320.2p  transcript_id AT1G08320.2  
At1g08320	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625812,2626190-2626272,2626774-2626868,2627345-2627451	AT1G08320.1 CDS  gene_syn T23G18.22  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT5G06839.1); Has 758 Blast hits to 757 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 28; Plants - 577; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G08320.1p  transcript_id AT1G08320.1  protein_id AT1G08320.1p  transcript_id AT1G08320.1  
At1g08320	chr1:002622113	0.0	C/2622113-2622200,2622292-2622434,2623228-2623449,2623671-2623942,2624048-2624096,2624256-2624333,2624665-2624724,2624885-2624923,2625603-2625812,2626190-2626272,2626774-2626868,2627345-2627451	AT1G08320.3 CDS  gene_syn T23G18.22  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT5G06839.1); Has 758 Blast hits to 757 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 28; Plants - 577; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G08320.3p  transcript_id AT1G08320.3  protein_id AT1G08320.3p  transcript_id AT1G08320.3  
At1g08340	chr1:002631308	0.0	W/2631308-2631432,2631530-2631770,2631857-2632087,2632271-2632669	AT1G08340.1 CDS  gene_syn T23G18.20, T23G18_20  go_component intracellular|GO:0005622||IEA  go_process signal transduction|GO:0007165||IEA  go_function Rac GTPase activator activity|GO:0030675||ISS  product rac GTPase activating protein, putative  note rac GTPase activating protein, putative; FUNCTIONS IN: Rac GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095), Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); BEST Arabidopsis thaliana protein match is: rac GTPase activating protein, putative (TAIR:AT5G22400.1); Has 28415 Blast hits to 13704 proteins in 473 species: Archae - 23; Bacteria - 456; Metazoa - 16450; Fungi - 2676; Plants - 1068; Viruses - 527; Other Eukaryotes - 7215 (source: NCBI BLink).  protein_id AT1G08340.1p  transcript_id AT1G08340.1  protein_id AT1G08340.1p  transcript_id AT1G08340.1  
At1g08350	chr1:002632970	0.0	C/2632970-2633186,2633412-2633899,2633995-2634151,2634288-2634419,2634523-2635055	AT1G08350.1 CDS  gene_syn T27G7.5, T27G7_5  go_component phragmoplast|GO:0009524|11115874|TAS  go_component integral to membrane|GO:0016021||ISS  go_process membrane fusion|GO:0006944|11591731|IMP  go_function SNAP receptor activity|GO:0005484|11591731|IPI  product endomembrane protein 70 family protein  note endomembrane protein 70 family protein; FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion; LOCATED IN: integral to membrane, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37310.1); Has 976 Blast hits to 969 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 436; Fungi - 139; Plants - 223; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G08350.1p  transcript_id AT1G08350.1  protein_id AT1G08350.1p  transcript_id AT1G08350.1  
At1g08350	chr1:002632970	0.0	C/2632970-2633186,2633412-2633899,2633995-2634151,2634288-2634419,2634523-2635111,2635209-2635249,2635460-2635605	AT1G08350.2 CDS  gene_syn T27G7.5, T27G7_5  go_component phragmoplast|GO:0009524|11115874|TAS  go_component integral to membrane|GO:0016021||ISS  go_process membrane fusion|GO:0006944|11591731|IMP  go_function SNAP receptor activity|GO:0005484|11591731|IPI  product endomembrane protein 70 family protein  note endomembrane protein 70 family protein; FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion; LOCATED IN: integral to membrane, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37310.1); Has 1031 Blast hits to 987 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 168; Plants - 231; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G08350.2p  transcript_id AT1G08350.2  protein_id AT1G08350.2p  transcript_id AT1G08350.2  
At1g08360	chr1:002636231	0.0	W/2636231-2636235,2636648-2636867,2637087-2637252,2637435-2637694	AT1G08360.1 CDS  gene_syn T27G7.6, T27G7_6  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process RNA processing|GO:0006396||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L10A (RPL10aA)  note 60S ribosomal protein L10A (RPL10aA); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: PGY1 (PIGGYBACK1); RNA binding / structural constituent of ribosome (TAIR:AT2G27530.2); Has 2469 Blast hits to 2469 proteins in 759 species: Archae - 186; Bacteria - 980; Metazoa - 354; Fungi - 122; Plants - 236; Viruses - 0; Other Eukaryotes - 591 (source: NCBI BLink).  protein_id AT1G08360.1p  transcript_id AT1G08360.1  protein_id AT1G08360.1p  transcript_id AT1G08360.1  
At1g08370	chr1:002638355	0.0	W/2638355-2638513,2638594-2638634,2638722-2638771,2638907-2639051,2639253-2639309,2639461-2639575,2639766-2640245,2640311-2640367	AT1G08370.1 CDS  gene_syn DCP1, decapping 1  gene DCP1  function Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However, unlike DCP2, DCP1 itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP2.  go_component cytoplasmic mRNA processing body|GO:0000932|17158604|IDA  go_component cytoplasmic mRNA processing body|GO:0000932|17485080|NAS  go_component cytoplasm|GO:0005737|17485080|IDA  go_process deadenylation-independent decapping of nuclear-transcribed mRNA|GO:0031087|17158604|IDA  go_function protein homodimerization activity|GO:0042803|17485080|IPI  go_function m7G(5 )pppN diphosphatase activity|GO:0050072|17485080|IDA  product DCP1 (decapping 1); m7G(5 )pppN diphosphatase/ protein homodimerization  note decapping 1 (DCP1); FUNCTIONS IN: m7G(5 )pppN diphosphatase activity, protein homodimerization activity; INVOLVED IN: deadenylation-independent decapping of nuclear-transcribed mRNA; LOCATED IN: cytoplasmic mRNA processing body, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dcp1-like decapping (InterPro:IPR010334); Has 3269 Blast hits to 2612 proteins in 312 species: Archae - 4; Bacteria - 200; Metazoa - 1226; Fungi - 491; Plants - 691; Viruses - 139; Other Eukaryotes - 518 (source: NCBI BLink).  protein_id AT1G08370.1p  transcript_id AT1G08370.1  protein_id AT1G08370.1p  transcript_id AT1G08370.1  
At1g08380	chr1:002641004	0.0	C/2641004-2641274,2641492-2641564,2641661-2641739	AT1G08380.1 CDS  gene_syn PSAO, PSI-O, T27G7.25, T27G7_25, photosystem I subunit O  gene PSAO  function Encodes subunit O of photosystem I.  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component photosystem I|GO:0009522|11801243|IDA  go_component thylakoid|GO:0009579|11801243|IDA  go_process response to salt stress|GO:0009651|11351099|IEP  go_process photosynthesis, light harvesting in photosystem I|GO:0009768|11801243|IC  go_function molecular_function|GO:0003674||ND  product PSAO (photosystem I subunit O)  note photosystem I subunit O (PSAO); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, photosynthesis, light harvesting in photosystem I; LOCATED IN: thylakoid, photosystem I, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I PsaO (InterPro:IPR017498); Has 41 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G08380.1p  transcript_id AT1G08380.1  protein_id AT1G08380.1p  transcript_id AT1G08380.1  
At1g08390	chr1:002642220	0.0	W/2642220-2642339,2642420-2642599,2642990-2643103	AT1G08390.1 CDS  gene_syn T27G7.27  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); Has 43 Blast hits to 43 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08390.1p  transcript_id AT1G08390.1  protein_id AT1G08390.1p  transcript_id AT1G08390.1  
At1g08400	chr1:002643348	0.0	C/2643348-2645288,2645378-2645466,2645539-2645628,2645711-2646005	AT1G08400.1 CDS  gene_syn T27G7.8, T27G7_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product chromosome structural maintenance protein-related  note chromosome structural maintenance protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528); BEST Arabidopsis thaliana protein match is: MAG2 (maigo2) (TAIR:AT3G47700.1); Has 98 Blast hits to 96 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 18; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G08400.1p  transcript_id AT1G08400.1  protein_id AT1G08400.1p  transcript_id AT1G08400.1  
At1g08410	chr1:002646307	0.0	W/2646307-2646533,2646701-2646802,2646891-2646977,2647483-2647576,2647681-2647737,2647821-2647900,2647984-2649106	AT1G08410.1 CDS  gene_syn T27G7.9, T27G7_9  go_component intracellular|GO:0005622||IEA  go_function GTP binding|GO:0005525||IEA  go_process biological_process|GO:0008150||ND  go_function GTP binding|GO:0005525||ISS  product GTP-binding family protein  note GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding (InterPro:IPR005289), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT2G27200.1); Has 4350 Blast hits to 4264 proteins in 1043 species: Archae - 70; Bacteria - 2325; Metazoa - 543; Fungi - 319; Plants - 130; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink).  protein_id AT1G08410.1p  transcript_id AT1G08410.1  protein_id AT1G08410.1p  transcript_id AT1G08410.1  
At1g08420	chr1:002649959	0.0	W/2649959-2650427,2650967-2651027,2651142-2651220,2651332-2651411,2651495-2651589,2651689-2651788,2651866-2651935,2652483-2652584,2652661-2652742,2652966-2653145,2653459-2653726,2653819-2654056,2654207-2654377,2654716-2654954,2655045-2655129,2655226-2655324,2655393-2655592,2655672-2655747,2656019-2656154,2656249-2656388,2656478-2656564	AT1G08420.1 CDS  gene_syn BRI1 SUPPRESSOR 1 (BSU1)-LIKE 2, BSL2, T27G7.10, T27G7_10  gene BSL2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_function iron ion binding|GO:0005506||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function manganese ion binding|GO:0030145||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product kelch repeat-containing protein / serine/threonine phosphoesterase family protein  note BRI1 SUPPRESSOR 1 (BSU1)-LIKE 2 (BSL2); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity, iron ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Metallophosphoesterase (InterPro:IPR004843), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Serine/threonine protein phosphatase, BSU1 (InterPro:IPR012391), Kelch-type beta propeller (InterPro:IPR015915), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: kelch repeat-containing serine/threonine phosphoesterase family protein (TAIR:AT2G27210.1); Has 8470 Blast hits to 6983 proteins in 414 species: Archae - 49; Bacteria - 256; Metazoa - 3431; Fungi - 1255; Plants - 1374; Viruses - 8; Other Eukaryotes - 2097 (source: NCBI BLink).  protein_id AT1G08420.1p  transcript_id AT1G08420.1  protein_id AT1G08420.1p  transcript_id AT1G08420.1  
At1g08430	chr1:002658800	0.0	W/2658800-2659010,2659133-2659273,2659407-2659679,2659774-2659895,2659983-2660126,2660439-2661029	AT1G08430.1 CDS  gene_syn ALMT1, ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, ATALMT1, T27G7.11, T27G7_11  gene ALMT1  function Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited).  go_component cellular_component|GO:0005575||ND  go_process response to aluminum ion|GO:0010044|16740662|IMP  go_process response to aluminum ion|GO:0010044|17885092|IEP  go_function malate transmembrane transporter activity|GO:0015140|16740662|IDA  product ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1); malate transmembrane transporter  note ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 (ALMT1); FUNCTIONS IN: malate transmembrane transporter activity; INVOLVED IN: response to aluminum ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08440.1); Has 327 Blast hits to 326 proteins in 76 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 6; Plants - 210; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G08430.1p  transcript_id AT1G08430.1  protein_id AT1G08430.1p  transcript_id AT1G08430.1  
At1g08440	chr1:002663027	0.0	W/2663027-2663228,2663370-2663510,2663684-2663956,2664158-2664279,2664395-2664538,2664720-2665343	AT1G08440.1 CDS  gene_syn T27G7.12, T27G7_12  product unknown protein  note CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1); malate transmembrane transporter (TAIR:AT1G08430.1); Has 377 Blast hits to 376 proteins in 91 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 4; Plants - 211; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G08440.1p  transcript_id AT1G08440.1  protein_id AT1G08440.1p  transcript_id AT1G08440.1  
At1g08450	chr1:002668008	0.0	C/2668008-2668019,2668135-2668167,2668288-2668374,2668468-2668524,2668696-2668791,2669066-2669133,2669226-2669283,2669374-2669460,2669648-2669695,2669822-2669878,2670159-2670255,2670607-2670799,2671289-2671396,2671689-2671800	AT1G08450.2 CDS  gene_syn CALRETICULIN 3, CRT3, T27G7.13, T27G7_13  gene CRT3  function Encodes calreticulin CRT3.  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_process protein folding|GO:0006457||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_function calcium ion binding|GO:0005509||ISS  product CRT3 (CALRETICULIN 3); calcium ion binding / unfolded protein binding  note CALRETICULIN 3 (CRT3); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: protein folding; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding (TAIR:AT1G56340.2); Has 948 Blast hits to 940 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 103; Plants - 171; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G08450.2p  transcript_id AT1G08450.2  protein_id AT1G08450.2p  transcript_id AT1G08450.2  
At1g08450	chr1:002668008	0.0	C/2668008-2668019,2668135-2668167,2668288-2668374,2668468-2668524,2668696-2668791,2669066-2669133,2669226-2669283,2669374-2669460,2669648-2669695,2669822-2669878,2670159-2670417,2670607-2670799,2671289-2671396,2671689-2671800	AT1G08450.1 CDS  gene_syn CALRETICULIN 3, CRT3, T27G7.13, T27G7_13  gene CRT3  function Encodes calreticulin CRT3.  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_process protein folding|GO:0006457||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_function calcium ion binding|GO:0005509||ISS  product CRT3 (CALRETICULIN 3); calcium ion binding / unfolded protein binding  note CALRETICULIN 3 (CRT3); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: protein folding; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 2 (CRT2) (TAIR:AT1G09210.1); Has 955 Blast hits to 955 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 553; Fungi - 107; Plants - 170; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G08450.1p  transcript_id AT1G08450.1  protein_id AT1G08450.1p  transcript_id AT1G08450.1  
At1g08460	chr1:002672527	0.0	W/2672527-2672770,2672921-2673507,2674167-2674469	AT1G08460.1 CDS  gene_syn HDA08, HDA8, HISTONE DEACETYLASE 8, T27G7.14, T27G7_14  gene HDA08  go_component cellular_component|GO:0005575||ND  go_process histone deacetylation|GO:0016575||ISS  go_function histone deacetylase activity|GO:0004407|12466527|ISS  go_function histone deacetylase activity|GO:0004407||ISS  product HDA08; histone deacetylase  note HDA08; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: HDA15; histone deacetylase (TAIR:AT3G18520.2); Has 6845 Blast hits to 6725 proteins in 846 species: Archae - 124; Bacteria - 2006; Metazoa - 1106; Fungi - 418; Plants - 273; Viruses - 0; Other Eukaryotes - 2918 (source: NCBI BLink).  protein_id AT1G08460.1p  transcript_id AT1G08460.1  protein_id AT1G08460.1p  transcript_id AT1G08460.1  
At1g08465	chr1:002676033	0.0	W/2676033-2676101,2678103-2678234,2678320-2678440,2678554-2678602,2678679-2678754,2679275-2679382	AT1G08465.1 CDS  gene_syn T27G7.15, YAB2, YABBY2  gene YAB2  function Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs  go_component cellular_component|GO:0005575||ND  go_process abaxial cell fate specification|GO:0010158|10457020|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product YAB2 (YABBY2); transcription factor  note YABBY2 (YAB2); FUNCTIONS IN: transcription factor activity; INVOLVED IN: abaxial cell fate specification; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon primordium, petal primordium, gynoecium primordium; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: YAB5 (YABBY5); transcription factor (TAIR:AT2G26580.2); Has 328 Blast hits to 326 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 317; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G08465.1p  transcript_id AT1G08465.1  protein_id AT1G08465.1p  transcript_id AT1G08465.1  
At1g08470	chr1:002682262	0.0	C/2682262-2682664,2682869-2683036,2683299-2683574,2683652-2683977	AT1G08470.1 CDS  gene_syn T27G7.16, T27G7_16  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biosynthetic process|GO:0009058||IEA  go_function strictosidine synthase activity|GO:0016844||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process alkaloid biosynthetic process|GO:0009821||ISS  go_function strictosidine synthase activity|GO:0016844||ISS  product strictosidine synthase family protein  note strictosidine synthase family protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase family protein (TAIR:AT5G22020.1); Has 898 Blast hits to 891 proteins in 185 species: Archae - 1; Bacteria - 239; Metazoa - 198; Fungi - 13; Plants - 301; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT1G08470.1p  transcript_id AT1G08470.1  protein_id AT1G08470.1p  transcript_id AT1G08470.1  
At1g08480	chr1:002684340	0.0	W/2684340-2684519,2684881-2684983,2685250-2685395	AT1G08480.1 CDS  gene_syn T27G7.26  go_component mitochondrion|GO:0005739|15276431|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08480.1p  transcript_id AT1G08480.1  protein_id AT1G08480.1p  transcript_id AT1G08480.1  
At1g08490	chr1:002685980	0.0	C/2685980-2686150,2686673-2686831,2686936-2687035,2687115-2687178,2687295-2687367,2687449-2687594,2687704-2687890,2687966-2688259,2688350-2688547	AT1G08490.1 CDS  gene_syn ATCPNIFS, ATNFS2, ATSUFS, CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE, CPNIFS, CYSTEINE DESULFURASE, SUFS, T27G7.17, T27G7_17  gene CPNIFS  function Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|12427997|IDA  go_process selenium metabolic process|GO:0001887|12427997|IDA  go_process sulfur metabolic process|GO:0006790|12427997|IDA  go_process response to selenium ion|GO:0010269|16244144|IMP  go_process iron incorporation into metallo-sulfur cluster|GO:0018283|15480755|IDA  go_function transaminase activity|GO:0008483||ISS  go_function selenocysteine lyase activity|GO:0009000|12427997|IDA  go_function cysteine desulfurase activity|GO:0031071|12427997|IDA  product CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase  note CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE (CPNIFS); FUNCTIONS IN: transaminase activity, selenocysteine lyase activity, cysteine desulfurase activity; INVOLVED IN: response to selenium ion, iron incorporation into metallo-sulfur cluster, sulfur metabolic process, selenium metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Cysteine desulfurase, SufS (InterPro:IPR010970), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: NFS1; ATP binding / cysteine desulfurase/ transaminase (TAIR:AT5G65720.1); Has 14713 Blast hits to 14706 proteins in 1595 species: Archae - 222; Bacteria - 8040; Metazoa - 313; Fungi - 249; Plants - 120; Viruses - 1; Other Eukaryotes - 5768 (source: NCBI BLink).  protein_id AT1G08490.1p  transcript_id AT1G08490.1  protein_id AT1G08490.1p  transcript_id AT1G08490.1  
At1g08500	chr1:002689110	0.0	W/2689110-2689302,2689388-2689881	AT1G08500.1 CDS  gene_syn T27G7.18, T27G7_18  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); Has 338 Blast hits to 336 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08500.1p  transcript_id AT1G08500.1  protein_id AT1G08500.1p  transcript_id AT1G08500.1  
At1g08510	chr1:002691546	0.0	C/2691546-2691866,2691957-2692128,2692356-2692469,2692697-2692830,2692912-2693409	AT1G08510.1 CDS  gene_syn FATB, T27G7.19, T27G7_19, fatty acyl-ACP thioesterases B  gene FATB  function Encodes an acyl-acyl carrier protein thioesterase. Hydrolyzes primarily saturated acyl-ACPs with chain lengths that vary between 8 and 18 carbons. Involved in saturated fatty acid synthesis. Nuclear-encoded, plastid-targeted globular protein that is functional as dimer.  go_component plastid|GO:0009536|15531590|TAS  go_process fatty acid biosynthetic process|GO:0006633|12671095|IMP  go_process fatty acid biosynthetic process|GO:0006633||ISS  go_function acyl carrier activity|GO:0000036|12061798|IDA  go_function acyl carrier activity|GO:0000036||ISS  go_function acyl-[acyl-carrier-protein] hydrolase activity|GO:0016297|12061798|IDA  product FATB (fatty acyl-ACP thioesterases B); acyl carrier/ acyl-[acyl-carrier-protein] hydrolase  note fatty acyl-ACP thioesterases B (FATB); FUNCTIONS IN: acyl-[acyl-carrier-protein] hydrolase activity, acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-ACP thioesterase (InterPro:IPR002864); BEST Arabidopsis thaliana protein match is: AtFaTA (Arabidopsis FatA acyl-ACP thioesterase); acyl carrier/ acyl-[acyl-carrier-protein] hydrolase (TAIR:AT3G25110.1); Has 601 Blast hits to 601 proteins in 229 species: Archae - 0; Bacteria - 378; Metazoa - 2; Fungi - 0; Plants - 212; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G08510.1p  transcript_id AT1G08510.1  protein_id AT1G08510.1p  transcript_id AT1G08510.1  
At1g08520	chr1:002696538	0.0	W/2696538-2696810,2697015-2697193,2697283-2697367,2697453-2697769,2697872-2697995,2698111-2698203,2698627-2698722,2698971-2699114,2699194-2699400,2699467-2699622,2699813-2699920,2700021-2700155,2700255-2700413,2700518-2700638,2700734-2700819	AT1G08520.1 CDS  gene_syn CHLD, PDE166, PIGMENT DEFECTIVE EMBRYO 166, T27G7.20, T27G7_20  gene CHLD  go_component chloroplast|GO:0009507|18431481|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function magnesium chelatase activity|GO:0016851||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component magnesium chelatase complex|GO:0010007|15815918|TAS  go_process chlorophyll biosynthetic process|GO:0015995|9418040|TAS  product CHLD; ATP binding / magnesium chelatase/ nucleoside-triphosphatase/ nucleotide binding  note CHLD; FUNCTIONS IN: magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: magnesium chelatase complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Magnesium chelatase, ChlI subunit (InterPro:IPR000523), Magnesium chelatase, ATPase subunit D (InterPro:IPR011776), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: CHLI1; ATPase/ magnesium chelatase (TAIR:AT4G18480.1); Has 13256 Blast hits to 6476 proteins in 961 species: Archae - 137; Bacteria - 2462; Metazoa - 7013; Fungi - 432; Plants - 359; Viruses - 193; Other Eukaryotes - 2660 (source: NCBI BLink).  protein_id AT1G08520.1p  transcript_id AT1G08520.1  protein_id AT1G08520.1p  transcript_id AT1G08520.1  
At1g08530	chr1:002701252	0.0	W/2701252-2701593,2701692-2701742,2702262-2702395,2702581-2702681,2702807-2702952	AT1G08530.1 CDS  gene_syn T27G7.21  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.3); Has 90 Blast hits to 90 proteins in 36 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G08530.1p  transcript_id AT1G08530.1  protein_id AT1G08530.1p  transcript_id AT1G08530.1  
At1g08540	chr1:002703461	0.0	W/2703461-2703539,2704080-2704261,2704495-2705091,2705537-2705767,2705879-2706019,2706106-2706306,2706409-2706696	AT1G08540.1 CDS  gene_syn ABC1, ATSIG1, ATSIG2, PUTATIVE PLASTID RNA POLYMERASE SIGMA-SUBUNIT, RNA POLYMERASE SIGMA SUBUNIT 1, RNA POLYMERASE SIGMA SUBUNIT 2, SIG1, SIG2, SIGA, SIGB, SIGMA FACTOR 1, SIGMA FACTOR 2, SIGMA FACTOR B, T27G7.22  gene SIG2  function Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.  go_component chloroplast|GO:0009507|10555304|IDA  go_process transcription initiation|GO:0006352|9280303|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to blue light|GO:0009637|18532976|IGI  go_process response to red light|GO:0010114|18532976|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  go_function sigma factor activity|GO:0016987|9280303|ISS  product SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor  note RNA POLYMERASE SIGMA SUBUNIT 2 (SIG2); FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription factor activity, sigma factor activity, DNA binding; INVOLVED IN: response to blue light, response to red light, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, regions 3 and 4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630), RNA polymerase sigma-70 factor (InterPro:IPR000943); BEST Arabidopsis thaliana protein match is: SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (TAIR:AT2G36990.1); Has 16604 Blast hits to 16542 proteins in 1586 species: Archae - 0; Bacteria - 9750; Metazoa - 4; Fungi - 2; Plants - 153; Viruses - 7; Other Eukaryotes - 6688 (source: NCBI BLink).  protein_id AT1G08540.1p  transcript_id AT1G08540.1  protein_id AT1G08540.1p  transcript_id AT1G08540.1  
At1g08550	chr1:002707462	0.0	W/2707462-2707677,2707755-2707921,2708187-2708283,2708388-2708782,2708874-2709387	AT1G08550.1 CDS  gene_syn ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, AVDE1, F22O13.3, F22O13_3, NON-PHOTOCHEMICAL QUENCHING 1, NPQ1, VIOLAXANTHIN DE-EPOXIDASE PRECURSOR  gene NPQ1  function Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS  go_component chloroplast photosystem II|GO:0030095|11058750|TAS  go_process fatty acid metabolic process|GO:0006631|16258032|IGI  go_process response to heat|GO:0009408|15923322|IMP  go_process xanthophyll cycle|GO:0010028|10588066|IMP  go_process chlorophyll metabolic process|GO:0015994|16258032|IGI  go_process xanthophyll metabolic process|GO:0016122|11058750|TAS  go_function violaxanthin de-epoxidase activity|GO:0046422|10588066|IMP  product NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1); violaxanthin de-epoxidase  note NON-PHOTOCHEMICAL QUENCHING 1 (NPQ1); FUNCTIONS IN: violaxanthin de-epoxidase activity; INVOLVED IN: response to heat, fatty acid metabolic process, chlorophyll metabolic process, xanthophyll metabolic process, xanthophyll cycle; LOCATED IN: thylakoid lumen, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin (InterPro:IPR002345), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038), Violaxanthin de-epoxidase (InterPro:IPR010788); BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related (TAIR:AT2G21860.1); Has 182 Blast hits to 179 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G08550.1p  transcript_id AT1G08550.1  protein_id AT1G08550.1p  transcript_id AT1G08550.1  
At1g08550	chr1:002707462	0.0	W/2707462-2707677,2707755-2707921,2708187-2708283,2708388-2708782,2708874-2709387	AT1G08550.2 CDS  gene_syn ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, AVDE1, F22O13.3, F22O13_3, NON-PHOTOCHEMICAL QUENCHING 1, NPQ1, VIOLAXANTHIN DE-EPOXIDASE PRECURSOR  gene NPQ1  function Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS  go_component chloroplast photosystem II|GO:0030095|11058750|TAS  go_process fatty acid metabolic process|GO:0006631|16258032|IGI  go_process response to heat|GO:0009408|15923322|IMP  go_process xanthophyll cycle|GO:0010028|10588066|IMP  go_process chlorophyll metabolic process|GO:0015994|16258032|IGI  go_process xanthophyll metabolic process|GO:0016122|11058750|TAS  go_function violaxanthin de-epoxidase activity|GO:0046422|10588066|IMP  product NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1); violaxanthin de-epoxidase  note NON-PHOTOCHEMICAL QUENCHING 1 (NPQ1); FUNCTIONS IN: violaxanthin de-epoxidase activity; INVOLVED IN: response to heat, fatty acid metabolic process, chlorophyll metabolic process, xanthophyll metabolic process, xanthophyll cycle; LOCATED IN: chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin (InterPro:IPR002345), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038), Violaxanthin de-epoxidase (InterPro:IPR010788); BEST Arabidopsis thaliana protein match is: violaxanthin de-epoxidase-related (TAIR:AT2G21860.1); Has 182 Blast hits to 179 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G08550.2p  transcript_id AT1G08550.2  protein_id AT1G08550.2p  transcript_id AT1G08550.2  
At1g08560	chr1:002709778	0.0	C/2709778-2710710	AT1G08560.1 CDS  gene_syn ATSYP111, F22O13.4, F22O13_4, KN, KNOLLE, SYNTAXIN OF PLANTS 111, SYP111  gene SYP111  function member of SYP11 Gene Family  go_component plasma membrane|GO:0005886|17644812|IDA  go_component phragmoplast|GO:0009524|8548827|IDA  go_component phragmoplast|GO:0009524|9396754|IDA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP111 (SYNTAXIN OF PLANTS 111); SNAP receptor  note SYNTAXIN OF PLANTS 111 (SYP111); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport, response to cyclopentenone; LOCATED IN: plasma membrane, phragmoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP124 (SYNTAXIN OF PLANTS 124); SNAP receptor (TAIR:AT1G61290.1); Has 1902 Blast hits to 1895 proteins in 215 species: Archae - 9; Bacteria - 30; Metazoa - 976; Fungi - 305; Plants - 265; Viruses - 1; Other Eukaryotes - 316 (source: NCBI BLink).  protein_id AT1G08560.1p  transcript_id AT1G08560.1  protein_id AT1G08560.1p  transcript_id AT1G08560.1  
At1g08570	chr1:002713059	0.0	W/2713059-2713142,2713236-2713295,2713547-2713723,2713809-2713973,2714064-2714312	AT1G08570.2 CDS  gene_syn ACHT4, ATYPICAL CYS HIS RICH THIOREDOXIN 4  gene ACHT4  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_component chloroplast stroma|GO:0009570|19109414|IDA  go_component chloroplast membrane|GO:0031969|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATYPICAL CYS HIS RICH THIOREDOXIN 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) (TAIR:AT2G33270.1); Has 1764 Blast hits to 1758 proteins in 364 species: Archae - 10; Bacteria - 288; Metazoa - 522; Fungi - 259; Plants - 353; Viruses - 3; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G08570.2p  transcript_id AT1G08570.2  protein_id AT1G08570.2p  transcript_id AT1G08570.2  
At1g08570	chr1:002713059	0.0	W/2713059-2713295,2713547-2713723,2713809-2713973,2714064-2714312	AT1G08570.1 CDS  gene_syn ACHT4, ATYPICAL CYS HIS RICH THIOREDOXIN 4  gene ACHT4  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_component chloroplast stroma|GO:0009570|19109414|IDA  go_component chloroplast membrane|GO:0031969|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATYPICAL CYS HIS RICH THIOREDOXIN 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766); BEST Arabidopsis thaliana protein match is: ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) (TAIR:AT2G33270.1); Has 1763 Blast hits to 1757 proteins in 364 species: Archae - 10; Bacteria - 288; Metazoa - 522; Fungi - 259; Plants - 352; Viruses - 3; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G08570.1p  transcript_id AT1G08570.1  protein_id AT1G08570.1p  transcript_id AT1G08570.1  
At1g08570	chr1:002713604	0.0	W/2713604-2713723,2713809-2713973,2714064-2714312	AT1G08570.3 CDS  gene_syn ACHT4, ATYPICAL CYS HIS RICH THIOREDOXIN 4  gene ACHT4  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_component chloroplast stroma|GO:0009570|19109414|IDA  go_component chloroplast membrane|GO:0031969|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATYPICAL CYS HIS RICH THIOREDOXIN 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) (TAIR:AT2G33270.1); Has 1685 Blast hits to 1680 proteins in 355 species: Archae - 10; Bacteria - 272; Metazoa - 515; Fungi - 258; Plants - 349; Viruses - 3; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT1G08570.3p  transcript_id AT1G08570.3  protein_id AT1G08570.3p  transcript_id AT1G08570.3  
At1g08570	chr1:002713604	0.0	W/2713604-2713723,2713809-2713973,2714064-2714312	AT1G08570.4 CDS  gene_syn ACHT4, ATYPICAL CYS HIS RICH THIOREDOXIN 4  gene ACHT4  function Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.  go_process cell redox homeostasis|GO:0045454||IEA  go_component chloroplast|GO:0009507|19109414|IDA  go_component chloroplast stroma|GO:0009570|19109414|IDA  go_component chloroplast membrane|GO:0031969|19109414|IDA  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|19109414|IDA  product ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATYPICAL CYS HIS RICH THIOREDOXIN 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) (TAIR:AT2G33270.1); Has 1685 Blast hits to 1680 proteins in 355 species: Archae - 10; Bacteria - 272; Metazoa - 515; Fungi - 258; Plants - 349; Viruses - 3; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT1G08570.4p  transcript_id AT1G08570.4  protein_id AT1G08570.4p  transcript_id AT1G08570.4  
At1g08580	chr1:002715296	0.0	C/2715296-2715357,2715474-2715554,2715943-2716009,2716190-2716351	AT1G08580.1 CDS  gene_syn F22O13.6, F22O13_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G08580.1p  transcript_id AT1G08580.1  protein_id AT1G08580.1p  transcript_id AT1G08580.1  
At1g08590	chr1:002718859	0.0	W/2718859-2721948	AT1G08590.1 CDS  gene_syn F22O13.7, F22O13_7  function similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888)  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product CLAVATA1 receptor kinase (CLV1)  note CLAVATA1 receptor kinase (CLV1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT4G28650.1); Has 163897 Blast hits to 104127 proteins in 2339 species: Archae - 91; Bacteria - 13084; Metazoa - 64339; Fungi - 7919; Plants - 56105; Viruses - 427; Other Eukaryotes - 21932 (source: NCBI BLink).  protein_id AT1G08590.1p  transcript_id AT1G08590.1  protein_id AT1G08590.1p  transcript_id AT1G08590.1  
At1g08600	chr1:002724562	0.0	W/2724562-2724876,2724961-2725023,2725122-2725217,2725300-2725392,2725503-2725693,2725778-2726021,2726533-2726646,2726950-2727033,2727448-2727801,2728250-2728563,2728659-2728749,2728855-2729064,2729216-2729335,2729475-2729641,2730002-2730143,2730402-2730551,2730636-2730691,2730782-2731079,2731223-2731352,2731763-2731818,2731933-2732159,2732240-2732443,2732527-2732605,2732693-2732952,2733050-2733431	AT1G08600.1 CDS  gene_syn ATRX, CHR20, F22O13.8, F22O13_8  gene ATRX  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding  note ATRX; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase/ nucleic acid binding (TAIR:AT3G19210.1); Has 24592 Blast hits to 17596 proteins in 1190 species: Archae - 213; Bacteria - 3805; Metazoa - 8759; Fungi - 3544; Plants - 1161; Viruses - 420; Other Eukaryotes - 6690 (source: NCBI BLink).  protein_id AT1G08600.1p  transcript_id AT1G08600.1  protein_id AT1G08600.1p  transcript_id AT1G08600.1  
At1g08610	chr1:002733788	0.0	C/2733788-2735467	AT1G08610.1 CDS  gene_syn F22O13.9, F22O13_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09900.1); Has 19965 Blast hits to 5457 proteins in 167 species: Archae - 5; Bacteria - 16; Metazoa - 328; Fungi - 289; Plants - 18418; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT1G08610.1p  transcript_id AT1G08610.1  protein_id AT1G08610.1p  transcript_id AT1G08610.1  
At1g08620	chr1:002737554	0.0	W/2737554-2737865,2737958-2738029,2738161-2738238,2738325-2738852,2738949-2739176,2739586-2739747,2740058-2740426,2740828-2742094,2742184-2742287,2742635-2742832,2743059-2743370	AT1G08620.1 CDS  gene_syn F22O13.10, F22O13_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), FY-rich, C-terminal subgroup (InterPro:IPR018516), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G30810.1); Has 1549 Blast hits to 1191 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 970; Fungi - 292; Plants - 156; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).  protein_id AT1G08620.1p  transcript_id AT1G08620.1  protein_id AT1G08620.1p  transcript_id AT1G08620.1  
At1g08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744491,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.5 CDS  gene_syn F22O13.11, F22O13_11, THA1, Threonine Aldolase 1  gene THA1  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function aldehyde-lyase activity|GO:0016832||ISS  product THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase  note Threonine Aldolase 1 (THA1); FUNCTIONS IN: threonine aldolase activity, aldehyde-lyase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: THA2 (Threonine Aldolase 2); threonine aldolase (TAIR:AT3G04520.1); Has 2610 Blast hits to 2608 proteins in 665 species: Archae - 13; Bacteria - 1278; Metazoa - 83; Fungi - 152; Plants - 49; Viruses - 0; Other Eukaryotes - 1035 (source: NCBI BLink).  protein_id AT1G08630.5p  transcript_id AT1G08630.5  protein_id AT1G08630.5p  transcript_id AT1G08630.5  
At1g08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.1 CDS  gene_syn F22O13.11, F22O13_11, THA1, Threonine Aldolase 1  gene THA1  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function aldehyde-lyase activity|GO:0016832||ISS  product THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase  note Threonine Aldolase 1 (THA1); FUNCTIONS IN: threonine aldolase activity, aldehyde-lyase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: THA2 (Threonine Aldolase 2); threonine aldolase (TAIR:AT3G04520.1); Has 2796 Blast hits to 2792 proteins in 699 species: Archae - 15; Bacteria - 1381; Metazoa - 85; Fungi - 155; Plants - 49; Viruses - 0; Other Eukaryotes - 1111 (source: NCBI BLink).  protein_id AT1G08630.1p  transcript_id AT1G08630.1  protein_id AT1G08630.1p  transcript_id AT1G08630.1  
At1g08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.2 CDS  gene_syn F22O13.11, F22O13_11, THA1, Threonine Aldolase 1  gene THA1  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function aldehyde-lyase activity|GO:0016832||ISS  product THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase  note Threonine Aldolase 1 (THA1); FUNCTIONS IN: threonine aldolase activity, aldehyde-lyase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: THA2 (Threonine Aldolase 2); threonine aldolase (TAIR:AT3G04520.1); Has 2796 Blast hits to 2792 proteins in 699 species: Archae - 15; Bacteria - 1381; Metazoa - 85; Fungi - 155; Plants - 49; Viruses - 0; Other Eukaryotes - 1111 (source: NCBI BLink).  protein_id AT1G08630.2p  transcript_id AT1G08630.2  protein_id AT1G08630.2p  transcript_id AT1G08630.2  
At1g08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.3 CDS  gene_syn F22O13.11, F22O13_11, THA1, Threonine Aldolase 1  gene THA1  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function aldehyde-lyase activity|GO:0016832||ISS  product THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase  note Threonine Aldolase 1 (THA1); FUNCTIONS IN: threonine aldolase activity, aldehyde-lyase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: THA2 (Threonine Aldolase 2); threonine aldolase (TAIR:AT3G04520.1); Has 2796 Blast hits to 2792 proteins in 699 species: Archae - 15; Bacteria - 1381; Metazoa - 85; Fungi - 155; Plants - 49; Viruses - 0; Other Eukaryotes - 1111 (source: NCBI BLink).  protein_id AT1G08630.3p  transcript_id AT1G08630.3  protein_id AT1G08630.3p  transcript_id AT1G08630.3  
At1g08630	chr1:002743948	0.0	C/2743948-2743986,2744072-2744138,2744237-2744337,2744475-2744533,2744614-2744818,2744903-2744953,2745033-2745144,2745243-2745685	AT1G08630.4 CDS  gene_syn F22O13.11, F22O13_11, THA1, Threonine Aldolase 1  gene THA1  function Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.  go_component cellular_component|GO:0005575||ND  go_process threonine catabolic process|GO:0006567|17172352|IMP  go_function threonine aldolase activity|GO:0004793|17172352|IDA  go_function aldehyde-lyase activity|GO:0016832||ISS  product THA1 (Threonine Aldolase 1); aldehyde-lyase/ threonine aldolase  note Threonine Aldolase 1 (THA1); FUNCTIONS IN: threonine aldolase activity, aldehyde-lyase activity; INVOLVED IN: threonine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: THA2 (Threonine Aldolase 2); threonine aldolase (TAIR:AT3G04520.1); Has 2796 Blast hits to 2792 proteins in 699 species: Archae - 15; Bacteria - 1381; Metazoa - 85; Fungi - 155; Plants - 49; Viruses - 0; Other Eukaryotes - 1111 (source: NCBI BLink).  protein_id AT1G08630.4p  transcript_id AT1G08630.4  protein_id AT1G08630.4p  transcript_id AT1G08630.4  
At1g08640	chr1:002748714	0.0	C/2748714-2748776,2749191-2749262,2749482-2749577,2749676-2749801,2750019-2750076,2750170-2750225,2750315-2750392,2750489-2750593,2750679-2750778,2751079-2751209	AT1G08640.1 CDS  gene_syn F22O13.12, F22O13_12  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G08640.1p  transcript_id AT1G08640.1  protein_id AT1G08640.1p  transcript_id AT1G08640.1  
At1g08650	chr1:002752206	0.0	W/2752206-2753010,2753183-2753232	AT1G08650.1 CDS  gene_syn PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE, PPCK1  gene PPCK1  function Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light.  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein serine/threonine kinase activity|GO:0004674|10571893|IDA  go_function kinase activity|GO:0016301||ISS  product PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE); kinase/ protein serine/threonine kinase  note PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE (PPCK1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PPCK2; kinase/ protein serine/threonine kinase (TAIR:AT3G04530.1); Has 88747 Blast hits to 87259 proteins in 2102 species: Archae - 70; Bacteria - 8396; Metazoa - 37190; Fungi - 8664; Plants - 16271; Viruses - 478; Other Eukaryotes - 17678 (source: NCBI BLink).  protein_id AT1G08650.1p  transcript_id AT1G08650.1  protein_id AT1G08650.1p  transcript_id AT1G08650.1  
At1g08660	chr1:002757116	0.0	C/2757116-2757514,2757602-2757683,2757805-2757953,2758134-2758192,2758319-2758409,2758531-2758732,2758817-2758908,2758988-2759065,2759159-2759245,2759406-2759485,2759572-2759677	AT1G08660.1 CDS  gene_syn F22O13.14, F22O13_14  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_function sialyltransferase activity|GO:0008373||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 29 protein / sialyltransferase family protein  note glycosyl transferase family 29 protein / sialyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 29 protein / sialyltransferase family protein (TAIR:AT3G48820.1); Has 1458 Blast hits to 1454 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 1325; Fungi - 0; Plants - 90; Viruses - 11; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G08660.1p  transcript_id AT1G08660.1  protein_id AT1G08660.1p  transcript_id AT1G08660.1  
At1g08660	chr1:002757584	0.0	C/2757584-2757683,2757805-2757953,2758134-2758192,2758319-2758409,2758531-2758732,2758817-2758908,2758988-2759065,2759159-2759245,2759406-2759485,2759572-2759677	AT1G08660.2 CDS  gene_syn F22O13.14, F22O13_14  go_process protein amino acid glycosylation|GO:0006486||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_function sialyltransferase activity|GO:0008373||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 29 protein / sialyltransferase family protein  note glycosyl transferase family 29 protein / sialyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 29 protein / sialyltransferase family protein (TAIR:AT3G48820.1); Has 1454 Blast hits to 1450 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 1323; Fungi - 0; Plants - 88; Viruses - 11; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G08660.2p  transcript_id AT1G08660.2  protein_id AT1G08660.2p  transcript_id AT1G08660.2  
At1g08670	chr1:002760419	0.0	C/2760419-2760872,2761127-2761249,2761433-2761551	AT1G08670.1 CDS  gene_syn F22O13.15, F22O13_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT3G46540.1); Has 584 Blast hits to 584 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 340; Fungi - 146; Plants - 68; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G08670.1p  transcript_id AT1G08670.1  protein_id AT1G08670.1p  transcript_id AT1G08670.1  
At1g08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765200,2765327-2765451,2765576-2766175,2766506-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.3 CDS  gene_syn AGD14, ARF GAP-like zinc finger-containing protein ZiGA4, ARF-GAP domain 14, AT1G08690, F22O13.16, F22O13_16, ZIGA4  gene ZIGA4  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase (TAIR:AT4G13350.2); Has 2570 Blast hits to 2242 proteins in 166 species: Archae - 0; Bacteria - 2; Metazoa - 1278; Fungi - 362; Plants - 260; Viruses - 0; Other Eukaryotes - 668 (source: NCBI BLink).  protein_id AT1G08680.3p  transcript_id AT1G08680.3  protein_id AT1G08680.3p  transcript_id AT1G08680.3  
At1g08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766506-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.1 CDS  gene_syn AGD14, ARF GAP-like zinc finger-containing protein ZiGA4, ARF-GAP domain 14, AT1G08690, F22O13.16, F22O13_16, ZIGA4  gene ZIGA4  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase (TAIR:AT4G13350.2); Has 2771 Blast hits to 2242 proteins in 169 species: Archae - 0; Bacteria - 4; Metazoa - 1271; Fungi - 367; Plants - 260; Viruses - 2; Other Eukaryotes - 867 (source: NCBI BLink).  protein_id AT1G08680.1p  transcript_id AT1G08680.1  protein_id AT1G08680.1p  transcript_id AT1G08680.1  
At1g08680	chr1:002762820	0.0	W/2762820-2762918,2763298-2763359,2764236-2764323,2764410-2764471,2764593-2764689,2765056-2765451,2765576-2766175,2766509-2766643,2766726-2766821,2766945-2767031,2767612-2767747,2768060-2768093,2768333-2768387	AT1G08680.2 CDS  gene_syn AGD14, ARF GAP-like zinc finger-containing protein ZiGA4, ARF-GAP domain 14, AT1G08690, F22O13.16, F22O13_16, ZIGA4  gene ZIGA4  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634||ISS  go_function DNA binding|GO:0003677||ISS  product ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4); ARF GTPase activator/ DNA binding / zinc ion binding  note ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE); GTP binding / GTPase (TAIR:AT4G13350.2); Has 2772 Blast hits to 2231 proteins in 170 species: Archae - 0; Bacteria - 7; Metazoa - 1267; Fungi - 359; Plants - 260; Viruses - 2; Other Eukaryotes - 877 (source: NCBI BLink).  protein_id AT1G08680.2p  transcript_id AT1G08680.2  protein_id AT1G08680.2p  transcript_id AT1G08680.2  
At1g08695	chr1:002769056	0.0	C/2769056-2769252,2769414-2769483	AT1G08695.1 CDS  gene_syn SCR-Like 3, SCRL3  gene SCRL3  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165||IEA  product SCRL3 (SCR-Like 3)  note SCR-Like 3 (SCRL3); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility response (InterPro:IPR010682); BEST Arabidopsis thaliana protein match is: SCRL1 (SCR-Like 1) (TAIR:AT4G10457.1); Has 30 Blast hits to 30 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08695.1p  transcript_id AT1G08695.1  protein_id AT1G08695.1p  transcript_id AT1G08695.1  
At1g08700	chr1:002769885	0.0	C/2769885-2770924,2771027-2771348	AT1G08700.1 CDS  gene_syn F22O13.18, F22O13_18  function Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular signaling cascade|GO:0007242||ISS  product presenilin family protein  note presenilin family protein; INVOLVED IN: intracellular signaling cascade; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22A, presenilin (InterPro:IPR001108); BEST Arabidopsis thaliana protein match is: presenilin family protein (TAIR:AT2G29900.1); Has 490 Blast hits to 367 proteins in 86 species: Archae - 4; Bacteria - 0; Metazoa - 380; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G08700.1p  transcript_id AT1G08700.1  protein_id AT1G08700.1p  transcript_id AT1G08700.1  
At1g08710	chr1:002771720	0.0	W/2771720-2771955,2772044-2772217,2772444-2772606,2772697-2772895,2773198-2773250	AT1G08710.1 CDS  gene_syn F22O13.19, F22O13_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 112 Blast hits to 112 proteins in 29 species: Archae - 3; Bacteria - 2; Metazoa - 76; Fungi - 2; Plants - 17; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G08710.1p  transcript_id AT1G08710.1  protein_id AT1G08710.1p  transcript_id AT1G08710.1  
At1g08710	chr1:002771720	0.0	W/2771720-2771955,2772044-2772217,2772444-2772606,2772697-2773011	AT1G08710.2 CDS  gene_syn F22O13.19, F22O13_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product F-box family protein  note F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 80 Blast hits to 80 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 47; Fungi - 2; Plants - 17; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G08710.2p  transcript_id AT1G08710.2  protein_id AT1G08710.2p  transcript_id AT1G08710.2  
At1g08720	chr1:002774089	0.0	W/2774089-2774499,2774851-2775273,2775519-2775622,2775708-2776801,2777040-2777080,2777597-2777665,2777806-2777906,2777998-2778076,2778168-2778266,2778362-2778430,2778555-2778604,2778737-2778913,2778993-2779077	AT1G08720.1 CDS  gene_syn EDR1, ENHANCED DISEASE RESISTANCE 1, F22O13.20, F22O13_20, MAPKK KINASE EDR1  gene EDR1  function enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearum  go_process MAPKKK cascade|GO:0000165|11114160|ISS  go_process cell death|GO:0008219|15894742|IMP  go_process response to water deprivation|GO:0009414|15894742|IMP  go_process response to bacterium|GO:0009617|16565218|IMP  go_process response to fungus|GO:0009620|11114160|IMP  go_process response to ethylene stimulus|GO:0009723|15894742|IMP  go_process response to ethylene stimulus|GO:0009723||NAS  go_process protein amino acid autophosphorylation|GO:0046777|12492839|IDA  go_function MAP kinase kinase kinase activity|GO:0004709|11114160|IMP  go_function MAP kinase kinase kinase activity|GO:0004709|11114160|ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301|12492839|IDA  go_function kinase activity|GO:0016301||ISS  product EDR1 (ENHANCED DISEASE RESISTANCE 1); MAP kinase kinase kinase/ kinase/ protein serine/threonine/tyrosine kinase  note ENHANCED DISEASE RESISTANCE 1 (EDR1); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, MAP kinase kinase kinase activity, kinase activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G11850.1); Has 87881 Blast hits to 86477 proteins in 3313 species: Archae - 43; Bacteria - 7058; Metazoa - 39537; Fungi - 7024; Plants - 18679; Viruses - 441; Other Eukaryotes - 15099 (source: NCBI BLink).  protein_id AT1G08720.1p  transcript_id AT1G08720.1  protein_id AT1G08720.1p  transcript_id AT1G08720.1  
At1g08730	chr1:002779963	0.0	W/2779963-2780014,2780158-2780261,2780355-2780498,2780581-2780726,2780822-2780978,2781072-2781130,2781214-2781373,2781446-2781595,2781697-2781833,2781908-2782054,2782139-2782240,2782317-2782374,2782446-2782547,2782650-2782687,2782772-2782898,2782973-2783143,2783298-2783429,2783565-2783674,2783767-2783827,2783948-2784125,2784240-2784445,2784534-2784653,2784950-2785048,2785128-2785349,2785464-2785603,2785709-2785820,2785917-2785964,2786057-2786311,2786400-2786555,2786659-2786865,2786953-2787096,2787182-2787252,2787356-2787455,2787526-2787582,2787662-2787718,2787867-2787947,2788045-2788127,2788202-2788325	AT1G08730.1 CDS  gene_syn ATXIC, F22O13.200, F22O13_200, MYOSIN XI C, XIC  gene XIC  function Class XI myosin gene  go_component myosin complex|GO:0016459|7811972|ISS  go_component myosin complex|GO:0016459||ISS  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product XIC; motor/ protein binding  note XIC; FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIE; motor/ protein binding (TAIR:AT1G54560.1); Has 47211 Blast hits to 29023 proteins in 1559 species: Archae - 522; Bacteria - 4337; Metazoa - 25658; Fungi - 3029; Plants - 1458; Viruses - 159; Other Eukaryotes - 12048 (source: NCBI BLink).  protein_id AT1G08730.1p  transcript_id AT1G08730.1  protein_id AT1G08730.1p  transcript_id AT1G08730.1  
At1g08735	chr1:002790290	0.0	W/2790290-2793641	AT1G08735.1 mRNA_TE_gene  pseudo  gene_syn F22O13.21, F22O13_21  note Transposable element gene, Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g08740	chr1:002795643	0.0	C/2795643-2800081	AT1G08740.1 mRNA_TE_gene  pseudo  gene_syn F22O13.23, F22O13_23  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G29240.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g08750	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.1 CDS  gene_syn F22O13.24, F22O13_24  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_process proteolysis|GO:0006508||ISS  go_function GPI-anchor transamidase activity|GO:0003923||ISS  product GPI-anchor transamidase, putative  note GPI-anchor transamidase, putative; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: ALPHA-VPE (alpha-vacuolar processing enzyme); cysteine-type endopeptidase (TAIR:AT2G25940.1); Has 602 Blast hits to 601 proteins in 187 species: Archae - 4; Bacteria - 2; Metazoa - 238; Fungi - 80; Plants - 173; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G08750.1p  transcript_id AT1G08750.1  protein_id AT1G08750.1p  transcript_id AT1G08750.1  
At1g08750	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.2 CDS  gene_syn F22O13.24, F22O13_24  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_process proteolysis|GO:0006508||ISS  go_function GPI-anchor transamidase activity|GO:0003923||ISS  product GPI-anchor transamidase, putative  note GPI-anchor transamidase, putative; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: ALPHA-VPE (alpha-vacuolar processing enzyme); cysteine-type endopeptidase (TAIR:AT2G25940.1); Has 602 Blast hits to 601 proteins in 187 species: Archae - 4; Bacteria - 2; Metazoa - 238; Fungi - 80; Plants - 173; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G08750.2p  transcript_id AT1G08750.2  protein_id AT1G08750.2p  transcript_id AT1G08750.2  
At1g08750	chr1:002801283	0.0	W/2801283-2801395,2801830-2801871,2801982-2802126,2802388-2802617,2802824-2802881,2803017-2803094,2803241-2803329,2803537-2803618,2803876-2804064,2804252-2804392	AT1G08750.3 CDS  gene_syn F22O13.24, F22O13_24  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_process proteolysis|GO:0006508||ISS  go_function GPI-anchor transamidase activity|GO:0003923||ISS  product GPI-anchor transamidase, putative  note GPI-anchor transamidase, putative; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: ALPHA-VPE (alpha-vacuolar processing enzyme); cysteine-type endopeptidase (TAIR:AT2G25940.1); Has 602 Blast hits to 601 proteins in 187 species: Archae - 4; Bacteria - 2; Metazoa - 238; Fungi - 80; Plants - 173; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G08750.3p  transcript_id AT1G08750.3  protein_id AT1G08750.3p  transcript_id AT1G08750.3  
At1g08760	chr1:002805478	0.0	W/2805478-2806464,2806758-2807057,2807311-2807402,2807542-2808409	AT1G08760.1 CDS  gene_syn F22O13.25, F22O13_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13370.1); Has 495 Blast hits to 251 proteins in 74 species: Archae - 0; Bacteria - 92; Metazoa - 46; Fungi - 15; Plants - 131; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).  protein_id AT1G08760.1p  transcript_id AT1G08760.1  protein_id AT1G08760.1p  transcript_id AT1G08760.1  
At1g08770	chr1:002808933	0.0	W/2808933-2809562	AT1G08770.1 CDS  gene_syn F22O13.26, F22O13_26, PRA1.E, PRENYLATED RAB ACCEPTOR 1.E  gene PRA1.E  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.E (PRENYLATED RAB ACCEPTOR 1.E)  note PRENYLATED RAB ACCEPTOR 1.E (PRA1.E); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA7 (TAIR:AT1G55190.1); Has 350 Blast hits to 350 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 56; Plants - 174; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G08770.1p  transcript_id AT1G08770.1  protein_id AT1G08770.1p  transcript_id AT1G08770.1  
At1g08780	chr1:002809925	0.0	C/2809925-2810185,2810910-2811026,2811115-2811126	AT1G08780.1 CDS  gene_syn ABI3-INTERACTING PROTEIN 3, AIP3, F22O13.27, F22O13_27, PDF4, PREFOLDIN 4  gene AIP3  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_process protein folding|GO:0006457||ISS  product AIP3 (ABI3-INTERACTING PROTEIN 3); unfolded protein binding  note ABI3-INTERACTING PROTEIN 3 (AIP3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin, subunit 4 (InterPro:IPR016661); Has 256 Blast hits to 255 proteins in 137 species: Archae - 2; Bacteria - 0; Metazoa - 87; Fungi - 83; Plants - 32; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G08780.1p  transcript_id AT1G08780.1  protein_id AT1G08780.1p  transcript_id AT1G08780.1  
At1g08790	chr1:002811989	0.0	W/2811989-2812478,2812564-2812646	AT1G08790.1 CDS  gene_syn F22O13.28, F22O13_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28690.1); Has 112 Blast hits to 112 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08790.1p  transcript_id AT1G08790.1  protein_id AT1G08790.1p  transcript_id AT1G08790.1  
At1g08800	chr1:002813578	0.0	C/2813578-2814758,2814918-2817078	AT1G08800.1 CDS  gene_syn F22O13.29, F22O13_29  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process response to salt stress|GO:0009651|11351099|IEP  product unknown protein  note unknown protein; INVOLVED IN: response to salt stress, N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30690.1); Has 5590 Blast hits to 4318 proteins in 373 species: Archae - 40; Bacteria - 467; Metazoa - 2654; Fungi - 401; Plants - 432; Viruses - 11; Other Eukaryotes - 1585 (source: NCBI BLink).  protein_id AT1G08800.1p  transcript_id AT1G08800.1  protein_id AT1G08800.1p  transcript_id AT1G08800.1  
At1g08800	chr1:002813578	0.0	C/2813578-2814758,2814918-2817078	AT1G08800.2 CDS  gene_syn F22O13.29, F22O13_29  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|11351099|IEP  product unknown protein  note unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30690.1); Has 5590 Blast hits to 4318 proteins in 373 species: Archae - 40; Bacteria - 467; Metazoa - 2654; Fungi - 401; Plants - 432; Viruses - 11; Other Eukaryotes - 1585 (source: NCBI BLink).  protein_id AT1G08800.2p  transcript_id AT1G08800.2  protein_id AT1G08800.2p  transcript_id AT1G08800.2  
At1g08810	chr1:002819279	0.0	C/2819279-2819858,2819970-2820099,2820197-2820329	AT1G08810.1 CDS  gene_syn AtMYB60, F22O13.30, F22O13_30, MYB60, myb domain protein 60  gene MYB60  function putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to water deprivation|GO:0009414|16005291|IEP  go_process response to light stimulus|GO:0009416|16005291|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16005291|IMP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process stomatal movement|GO:0010118|16005291|IMP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16005291|TAS  product MYB60 (myb domain protein 60); DNA binding / transcription factor  note myb domain protein 60 (MYB60); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 12 processes; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB30 (MYB DOMAIN PROTEIN 30); DNA binding / transcription factor (TAIR:AT3G28910.1); Has 6212 Blast hits to 5807 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 633; Fungi - 286; Plants - 3709; Viruses - 7; Other Eukaryotes - 1577 (source: NCBI BLink).  protein_id AT1G08810.1p  transcript_id AT1G08810.1  protein_id AT1G08810.1p  transcript_id AT1G08810.1  
At1g08810	chr1:002819279	0.0	C/2819279-2819872	AT1G08810.2 CDS  gene_syn AtMYB60, F22O13.30, F22O13_30, MYB60, myb domain protein 60  gene MYB60  function putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to water deprivation|GO:0009414|16005291|IEP  go_process response to light stimulus|GO:0009416|16005291|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16005291|IMP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process stomatal movement|GO:0010118|16005291|IMP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|16005291|TAS  product MYB60 (myb domain protein 60); DNA binding / transcription factor  note myb domain protein 60 (MYB60); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 12 processes; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB30 (MYB DOMAIN PROTEIN 30); DNA binding / transcription factor (TAIR:AT3G28910.1); Has 2790 Blast hits to 2774 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 4; Plants - 2459; Viruses - 6; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G08810.2p  transcript_id AT1G08810.2  protein_id AT1G08810.2p  transcript_id AT1G08810.2  
At1g08820	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.1 CDS  gene_syn F22O13.31, F22O13_31, VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2, VAP27-2  gene VAP27-2  function Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function structural molecule activity|GO:0005198||IEA  go_component endoplasmic reticulum membrane|GO:0005789|11907339|IDA  go_process intracellular transport|GO:0046907|11907339|TAS  product VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule  note VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2 (VAP27-2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular transport; LOCATED IN: plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.3); Has 794 Blast hits to 773 proteins in 160 species: Archae - 0; Bacteria - 17; Metazoa - 379; Fungi - 109; Plants - 229; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G08820.1p  transcript_id AT1G08820.1  protein_id AT1G08820.1p  transcript_id AT1G08820.1  
At1g08820	chr1:002821810	0.0	C/2821810-2821923,2822017-2822094,2822171-2822641,2822833-2823012,2823105-2823220,2823616-2823697,2823827-2823897,2824364-2824412	AT1G08820.2 CDS  gene_syn F22O13.31, F22O13_31, VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2, VAP27-2  gene VAP27-2  function Encodes VAP33-like protein that interacts with cowpea mosaic virus protein 60K. Is a SNARE-like protein that may be involved in vesicular transport to or from the ER.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function structural molecule activity|GO:0005198||IEA  go_component endoplasmic reticulum membrane|GO:0005789|11907339|IDA  go_process intracellular transport|GO:0046907|11907339|TAS  product VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2); structural molecule  note VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2 (VAP27-2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular transport; LOCATED IN: plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: VAP (VESICLE ASSOCIATED PROTEIN); protein binding (TAIR:AT3G60600.3); Has 794 Blast hits to 773 proteins in 160 species: Archae - 0; Bacteria - 17; Metazoa - 379; Fungi - 109; Plants - 229; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G08820.2p  transcript_id AT1G08820.2  protein_id AT1G08820.2p  transcript_id AT1G08820.2  
At1g08830	chr1:002827700	0.0	W/2827700-2827775,2827872-2827973,2828106-2828201,2828380-2828411,2828506-2828581,2828753-2828806,2829031-2829053	AT1G08830.1 CDS  gene_syn COPPER/ZINC SUPEROXIDE DISMUTASE 1, CSD1, F22O13.32, F22O13_32  gene CSD1  function Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress.  go_component cytoplasm|GO:0005737|1731963|NAS  go_component cytosol|GO:0005829|12028573|TAS  go_process response to oxidative stress|GO:0006979|12028573|TAS  go_process response to oxidative stress|GO:0006979|9765550|IEP  go_process response to salt stress|GO:0009651|19148671|IEP  go_process response to iron ion|GO:0010039|16861386|IEP  go_process response to ozone|GO:0010193|19148671|IEP  go_process removal of superoxide radicals|GO:0019430|9765550|IC  go_process defense response to bacterium|GO:0042742|19148671|IEP  go_process response to copper ion|GO:0046688|15772282|IEP  go_function superoxide dismutase activity|GO:0004784|9765550|IDA  go_function superoxide dismutase activity|GO:0004784|9765550|TAS  product CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase  note COPPER/ZINC SUPEROXIDE DISMUTASE 1 (CSD1); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT2G28190.1); Has 3372 Blast hits to 3357 proteins in 1004 species: Archae - 6; Bacteria - 1189; Metazoa - 968; Fungi - 206; Plants - 550; Viruses - 131; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G08830.1p  transcript_id AT1G08830.1  protein_id AT1G08830.1p  transcript_id AT1G08830.1  
At1g08830	chr1:002827700	0.0	W/2827700-2827775,2827872-2827973,2828106-2828201,2828380-2828411,2828506-2828581,2828753-2828806,2829031-2829053	AT1G08830.2 CDS  gene_syn COPPER/ZINC SUPEROXIDE DISMUTASE 1, CSD1, F22O13.32, F22O13_32  gene CSD1  function Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress.  go_component cytoplasm|GO:0005737|1731963|NAS  go_component cytosol|GO:0005829|12028573|TAS  go_process response to oxidative stress|GO:0006979|12028573|TAS  go_process response to oxidative stress|GO:0006979|9765550|IEP  go_process response to salt stress|GO:0009651|19148671|IEP  go_process response to iron ion|GO:0010039|16861386|IEP  go_process response to ozone|GO:0010193|19148671|IEP  go_process removal of superoxide radicals|GO:0019430|9765550|IC  go_process defense response to bacterium|GO:0042742|19148671|IEP  go_process response to copper ion|GO:0046688|15772282|IEP  go_function superoxide dismutase activity|GO:0004784|9765550|IDA  go_function superoxide dismutase activity|GO:0004784|9765550|TAS  product CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); superoxide dismutase  note COPPER/ZINC SUPEROXIDE DISMUTASE 1 (CSD1); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT2G28190.1); Has 3372 Blast hits to 3357 proteins in 1004 species: Archae - 6; Bacteria - 1189; Metazoa - 968; Fungi - 206; Plants - 550; Viruses - 131; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G08830.2p  transcript_id AT1G08830.2  protein_id AT1G08830.2p  transcript_id AT1G08830.2  
At1g08840	chr1:002829579	0.0	C/2829579-2829704,2829791-2829910,2830004-2830141,2830205-2830278,2830373-2830412,2830769-2830906,2830996-2831088,2831168-2831245,2831469-2831620,2831695-2831764,2831980-2832147,2832273-2832377,2832495-2832561,2832650-2832771,2832901-2832975,2833145-2833399,2833492-2833626,2834151-2834261,2834339-2834396,2834489-2834544,2834639-2834794,2834927-2834992,2835372-2835454,2835739-2835835,2835948-2836058,2836158-2836290,2836596-2836657,2836723-2836776,2836861-2837067,2837248-2837310,2837386-2837598,2837737-2837865,2838034-2838369	AT1G08840.1 CDS  gene_syn emb2411, embryo defective 2411  gene emb2411  go_component chloroplast|GO:0009507||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_process DNA replication|GO:0006260||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATP-dependent DNA helicase activity|GO:0004003||ISS  product emb2411 (embryo defective 2411); ATP binding / ATP-dependent DNA helicase/ DNA binding  note embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 4081 Blast hits to 3639 proteins in 571 species: Archae - 158; Bacteria - 979; Metazoa - 1088; Fungi - 747; Plants - 269; Viruses - 30; Other Eukaryotes - 810 (source: NCBI BLink).  protein_id AT1G08840.1p  transcript_id AT1G08840.1  protein_id AT1G08840.1p  transcript_id AT1G08840.1  
At1g08845	chr1:002838789	0.0	W/2838789-2838815,2839212-2839304,2839840-2839971,2840503-2840955	AT1G08845.2 CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component endomembrane system|GO:0012505||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: endomembrane system, ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT3G22450.1).  protein_id AT1G08845.2p  transcript_id AT1G08845.2  protein_id AT1G08845.2p  transcript_id AT1G08845.2  
At1g08845	chr1:002839855	0.0	W/2839855-2839971,2840503-2840955	AT1G08845.1 CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT3G22450.1); Has 150 Blast hits to 150 proteins in 39 species: Archae - 0; Bacteria - 60; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G08845.1p  transcript_id AT1G08845.1  protein_id AT1G08845.1p  transcript_id AT1G08845.1  
At1g08860	chr1:002842153	0.0	W/2842153-2842317,2843005-2843052,2843179-2843327,2843412-2843460,2843557-2843613,2843746-2843925,2844020-2844154,2844235-2844296,2844377-2844473,2844556-2844670,2844753-2844829,2845069-2845206,2845360-2845524,2845639-2845752,2845842-2845938,2846032-2846138	AT1G08860.1 CDS  gene_syn BON3, BONZAI 3, F7G19.25, F7G19_25  gene BON3  function Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death.  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process positive regulation of cellular defense response|GO:0010186||NAS  go_process cellular homeostasis|GO:0019725||NAS  go_function calcium-dependent phospholipid binding|GO:0005544||NAS  product BON3 (BONZAI 3); calcium-dependent phospholipid binding  note BONZAI 3 (BON3); FUNCTIONS IN: calcium-dependent phospholipid binding; INVOLVED IN: N-terminal protein myristoylation, positive regulation of cellular defense response, cellular homeostasis; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Copine (InterPro:IPR010734), C2 calcium-dependent membrane targeting (InterPro:IPR000008), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: BON1 (BONZAI 1); calcium-dependent phospholipid binding (TAIR:AT5G61900.3); Has 1210 Blast hits to 1137 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 774; Fungi - 8; Plants - 179; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT1G08860.1p  transcript_id AT1G08860.1  protein_id AT1G08860.1p  transcript_id AT1G08860.1  
At1g08870	chr1:002846536	0.0	C/2846536-2846608	AT1G08870.1 tRNA  gene_syn 50888.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT1G08870.1  
At1g08880	chr1:002847144	0.0	C/2847144-2847365,2847470-2847676	AT1G08880.1 CDS  gene_syn F7G19.24, F7G19_24, G-H2AX, GAMMA H2AX, GAMMA HISTONE VARIANT H2AX, GAMMA-H2AX, H2AXA, HTA5  gene H2AXA  function Encodes HTA5, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (& 947;-H2AX) occurs around the break site.  H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse & 947;-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no & 947;-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of & 947;-H2AX to a maximum of >50 diffuse foci. The level of & 947;H2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10 20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|17785529|IDA  go_function DNA binding|GO:0003677||ISS  product H2AXA; DNA binding  note H2AXA; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX); DNA binding (TAIR:AT1G54690.1); Has 3283 Blast hits to 3283 proteins in 307 species: Archae - 0; Bacteria - 0; Metazoa - 2200; Fungi - 253; Plants - 450; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT1G08880.1p  transcript_id AT1G08880.1  protein_id AT1G08880.1p  transcript_id AT1G08880.1  
At1g08890	chr1:002848374	0.0	W/2848374-2848505,2848737-2848799,2848911-2849000,2849130-2849189,2849288-2849353,2849460-2849525,2849610-2849685,2849796-2849860,2849952-2850044,2850137-2850217,2850477-2850561,2850679-2850722,2850815-2850877,2850969-2851028,2851117-2851170,2851278-2851337,2851437-2851551,2851895-2852016	AT1G08890.1 CDS  gene_syn F7G19.23, F7G19_23  go_component chloroplast|GO:0009507|15028209|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter family protein  note sugar transporter family protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: carbohydrate transmembrane transporter (TAIR:AT1G08900.2); Has 14806 Blast hits to 14481 proteins in 1001 species: Archae - 203; Bacteria - 3991; Metazoa - 4226; Fungi - 4106; Plants - 1396; Viruses - 0; Other Eukaryotes - 884 (source: NCBI BLink).  protein_id AT1G08890.1p  transcript_id AT1G08890.1  protein_id AT1G08890.1p  transcript_id AT1G08890.1  
At1g08900	chr1:002852478	0.0	W/2852478-2852603,2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.1 CDS  gene_syn F7G19.22, F7G19_22  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product carbohydrate transmembrane transporter  note carbohydrate transmembrane transporter; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter family protein (TAIR:AT1G08890.1); Has 15336 Blast hits to 14989 proteins in 1020 species: Archae - 218; Bacteria - 4213; Metazoa - 4473; Fungi - 4120; Plants - 1384; Viruses - 0; Other Eukaryotes - 928 (source: NCBI BLink).  protein_id AT1G08900.1p  transcript_id AT1G08900.1  protein_id AT1G08900.1p  transcript_id AT1G08900.1  
At1g08900	chr1:002852478	0.0	W/2852478-2852603,2852716-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.2 CDS  gene_syn F7G19.22, F7G19_22  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product carbohydrate transmembrane transporter  note carbohydrate transmembrane transporter; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter family protein (TAIR:AT1G08890.1); Has 15336 Blast hits to 14989 proteins in 1020 species: Archae - 218; Bacteria - 4213; Metazoa - 4473; Fungi - 4120; Plants - 1384; Viruses - 0; Other Eukaryotes - 928 (source: NCBI BLink).  protein_id AT1G08900.2p  transcript_id AT1G08900.2  protein_id AT1G08900.2p  transcript_id AT1G08900.2  
At1g08900	chr1:002852478	0.0	W/2852478-2852603,2852740-2852778,2852906-2852995,2853110-2853169,2853271-2853336,2853436-2853501,2853604-2853679,2853779-2853843,2853946-2854038,2854143-2854223,2854334-2854418,2854523-2854566,2854658-2854720,2854812-2854871,2854968-2855021,2855130-2855189,2855281-2855395,2855489-2855610	AT1G08900.3 CDS  gene_syn F7G19.22, F7G19_22  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product carbohydrate transmembrane transporter  note carbohydrate transmembrane transporter; FUNCTIONS IN: carbohydrate transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter family protein (TAIR:AT1G08890.1); Has 15141 Blast hits to 14796 proteins in 1012 species: Archae - 219; Bacteria - 4053; Metazoa - 4475; Fungi - 4105; Plants - 1386; Viruses - 0; Other Eukaryotes - 903 (source: NCBI BLink).  protein_id AT1G08900.3p  transcript_id AT1G08900.3  protein_id AT1G08900.3p  transcript_id AT1G08900.3  
At1g08910	chr1:002856227	0.0	W/2856227-2856249,2856421-2856483,2856567-2856678,2856776-2856844,2856941-2857006,2857087-2857169,2857301-2857352,2857431-2857502,2857779-2857846,2857936-2857984,2858076-2858160,2858237-2858338,2858503-2858554,2858653-2858704,2858995-2859057,2859193-2859846,2859953-2860816	AT1G08910.1 CDS  gene_syn EMB3001, F7G19.21, F7G19_21, embryo defective 3001  gene EMB3001  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function zinc ion binding|GO:0008270||ISS  product EMB3001 (embryo defective 3001); zinc ion binding  note embryo defective 3001 (EMB3001); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, MIZ-type (InterPro:IPR004181); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT5G41580.1); Has 798 Blast hits to 781 proteins in 145 species: Archae - 0; Bacteria - 21; Metazoa - 523; Fungi - 113; Plants - 65; Viruses - 5; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G08910.1p  transcript_id AT1G08910.1  protein_id AT1G08910.1p  transcript_id AT1G08910.1  
At1g08920	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869515-2869595,2869714-2869767,2869860-2869919,2870014-2870128,2870236-2870360	AT1G08920.2 CDS  gene_syn F7G19.20, F7G19_20  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Phosphopantetheine attachment site (InterPro:IPR006162), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G08930.2); Has 14684 Blast hits to 14344 proteins in 1042 species: Archae - 183; Bacteria - 4689; Metazoa - 3670; Fungi - 3962; Plants - 1292; Viruses - 0; Other Eukaryotes - 888 (source: NCBI BLink).  protein_id AT1G08920.2p  transcript_id AT1G08920.2  protein_id AT1G08920.2p  transcript_id AT1G08920.2  
At1g08920	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869536-2869595,2869714-2869767,2869860-2869919,2870014-2870128,2870236-2870360	AT1G08920.1 CDS  gene_syn F7G19.20, F7G19_20  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G08930.2); Has 15222 Blast hits to 14869 proteins in 1056 species: Archae - 191; Bacteria - 5015; Metazoa - 3770; Fungi - 4034; Plants - 1313; Viruses - 0; Other Eukaryotes - 899 (source: NCBI BLink).  protein_id AT1G08920.1p  transcript_id AT1G08920.1  protein_id AT1G08920.1p  transcript_id AT1G08920.1  
At1g08920	chr1:002867446	0.0	W/2867446-2867592,2867683-2867745,2867843-2867932,2868011-2868136,2868231-2868296,2868398-2868473,2868569-2868633,2868716-2868808,2868904-2868984,2869078-2869162,2869251-2869294,2869378-2869440,2869536-2869595,2869714-2869767,2869860-2869919,2870014-2870190	AT1G08920.3 CDS  gene_syn F7G19.20, F7G19_20  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product sugar transporter, putative  note sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G08930.2); Has 14224 Blast hits to 13969 proteins in 1041 species: Archae - 186; Bacteria - 4594; Metazoa - 3563; Fungi - 3841; Plants - 1193; Viruses - 0; Other Eukaryotes - 847 (source: NCBI BLink).  protein_id AT1G08920.3p  transcript_id AT1G08920.3  protein_id AT1G08920.3p  transcript_id AT1G08920.3  
At1g08930	chr1:002873604	0.0	W/2873604-2873828,2873958-2874020,2874096-2874185,2874311-2874370,2874492-2874557,2874648-2874713,2874816-2874891,2874996-2875060,2875210-2875302,2875415-2875495,2875635-2875719,2875824-2875867,2875961-2876023,2876121-2876180,2876326-2876439,2876639-2876753,2876855-2876979	AT1G08930.1 CDS  gene_syn EARLY RESPONSE TO DEHYDRATION 6, ERD6, F7G19.19, F7G19_19  gene ERD6  function encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process response to cold|GO:0009409|9545564|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function sugar transmembrane transporter activity|GO:0051119|9545564|ISS  product ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter  note EARLY RESPONSE TO DEHYDRATION 6 (ERD6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to water deprivation, response to cold, response to chitin; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT1G08920.1); Has 17916 Blast hits to 17491 proteins in 1166 species: Archae - 246; Bacteria - 6333; Metazoa - 4397; Fungi - 4333; Plants - 1581; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink).  protein_id AT1G08930.1p  transcript_id AT1G08930.1  protein_id AT1G08930.1p  transcript_id AT1G08930.1  
At1g08930	chr1:002873604	0.0	W/2873604-2873828,2873958-2874020,2874096-2874185,2874311-2874370,2874492-2874557,2874648-2874713,2874816-2874891,2874996-2875060,2875210-2875302,2875415-2875495,2875635-2875719,2875824-2875867,2875961-2876023,2876121-2876180,2876326-2876439,2876639-2876753,2876855-2876979	AT1G08930.2 CDS  gene_syn EARLY RESPONSE TO DEHYDRATION 6, ERD6, F7G19.19, F7G19_19  gene ERD6  function encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process response to cold|GO:0009409|9545564|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to chitin|GO:0010200|17722694|IEP  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  go_function sugar transmembrane transporter activity|GO:0051119|9545564|ISS  product ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transmembrane transporter/ sugar transmembrane transporter/ sugar:hydrogen symporter  note EARLY RESPONSE TO DEHYDRATION 6 (ERD6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to water deprivation, response to cold, response to chitin; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter, putative (TAIR:AT1G08920.1); Has 17916 Blast hits to 17491 proteins in 1166 species: Archae - 246; Bacteria - 6333; Metazoa - 4397; Fungi - 4333; Plants - 1581; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink).  protein_id AT1G08930.2p  transcript_id AT1G08930.2  protein_id AT1G08930.2p  transcript_id AT1G08930.2  
At1g08940	chr1:002877694	0.0	W/2877694-2878150,2878716-2879104	AT1G08940.1 CDS  gene_syn F7G19.18, F7G19_18  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT3G05170.1); Has 608 Blast hits to 596 proteins in 217 species: Archae - 9; Bacteria - 317; Metazoa - 2; Fungi - 128; Plants - 42; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G08940.1p  transcript_id AT1G08940.1  protein_id AT1G08940.1p  transcript_id AT1G08940.1  
At1g08950	chr1:002879303	0.0	W/2879303-2879374	AT1G08950.1 tRNA  gene_syn 50888.TRNA-PRO-1  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G08950.1  
At1g08960	chr1:002879698	0.0	W/2879698-2880573,2881113-2881877	AT1G08960.1 CDS  gene_syn ATCAX11, CATION EXCHANGER 11, CAX11, F7G19.17, F7G19_17  gene CAX11  function member of Potassium-dependent sodium-calcium exchanger like-family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812||ISS  go_function calcium:sodium antiporter activity|GO:0005432||ISS  go_function cation:cation antiporter activity|GO:0015491|11500563|NAS  go_function cation:cation antiporter activity|GO:0015491||ISS  product CAX11; calcium:sodium antiporter/ cation:cation antiporter  note CAX11; FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: CAX7 (calcium exchanger 7); calcium:sodium antiporter/ cation:cation antiporter (TAIR:AT5G17860.1); Has 3109 Blast hits to 2185 proteins in 538 species: Archae - 46; Bacteria - 1147; Metazoa - 1059; Fungi - 183; Plants - 97; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink).  protein_id AT1G08960.1p  transcript_id AT1G08960.1  protein_id AT1G08960.1p  transcript_id AT1G08960.1  
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.1 CDS  gene_syn F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9, NUCLEAR FACTOR Y, SUBUNIT C9  gene NF-YC9  function heme activated protein (HAP5c)  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C9 (NF-YC9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor (TAIR:AT1G54830.3); Has 916 Blast hits to 916 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 227; Plants - 253; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G08970.1p  transcript_id AT1G08970.1  protein_id AT1G08970.1p  transcript_id AT1G08970.1  
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.2 CDS  gene_syn F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9, NUCLEAR FACTOR Y, SUBUNIT C9  gene NF-YC9  function heme activated protein (HAP5c)  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C9 (NF-YC9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor (TAIR:AT1G54830.3); Has 916 Blast hits to 916 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 227; Plants - 253; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G08970.2p  transcript_id AT1G08970.2  protein_id AT1G08970.2p  transcript_id AT1G08970.2  
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.3 CDS  gene_syn F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9, NUCLEAR FACTOR Y, SUBUNIT C9  gene NF-YC9  function heme activated protein (HAP5c)  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C9 (NF-YC9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor (TAIR:AT1G54830.3); Has 916 Blast hits to 916 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 227; Plants - 253; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G08970.3p  transcript_id AT1G08970.3  protein_id AT1G08970.3p  transcript_id AT1G08970.3  
At1g08970	chr1:002883144	0.0	W/2883144-2883839	AT1G08970.4 CDS  gene_syn F7G19.16, F7G19_16, HAP5C, HEME ACTIVATED PROTEIN 5C, NF-YC9, NUCLEAR FACTOR Y, SUBUNIT C9  gene NF-YC9  function heme activated protein (HAP5c)  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor  note NUCLEAR FACTOR Y, SUBUNIT C9 (NF-YC9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: NF-YC3 (NUCLEAR FACTOR Y, SUBUNIT C3); DNA binding / transcription factor (TAIR:AT1G54830.3); Has 916 Blast hits to 916 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 358; Fungi - 227; Plants - 253; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G08970.4p  transcript_id AT1G08970.4  protein_id AT1G08970.4p  transcript_id AT1G08970.4  
At1g08980	chr1:002884455	0.0	W/2884455-2884567,2884649-2884801,2884934-2885058,2885150-2885275,2885351-2885533,2885614-2885770,2885840-2886008,2886099-2886233,2886314-2886430	AT1G08980.1 CDS  gene_syn AMI1, AMIDASE 1, AMIDASE-LIKE PROTEIN 1, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, ATAMI1, ATTOC64-I  gene AMI1  function Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro. This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide, a native metabolite of A. thaliana. It appears to exist as a monomer.  go_component cytoplasm|GO:0005737|16738862|IDA  go_process indoleacetic acid biosynthetic process|GO:0009684|12620340|IDA  go_function amidase activity|GO:0004040|17555521|IDA  go_function amidase activity|GO:0004040||ISS  go_function hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|GO:0016810|12620340|IDA  go_function indoleacetamide hydrolase activity|GO:0043864|12620340|IDA  product AMI1 (AMIDASE 1); amidase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds / indoleacetamide hydrolase  note AMIDASE 1 (AMI1); FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, amidase activity, indoleacetamide hydrolase activity; INVOLVED IN: indoleacetic acid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidase signature enzyme (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III); binding / carbon-nitrogen ligase, with glutamine as amido-N-donor (TAIR:AT3G17970.1); Has 12758 Blast hits to 12738 proteins in 1424 species: Archae - 143; Bacteria - 6071; Metazoa - 493; Fungi - 876; Plants - 203; Viruses - 0; Other Eukaryotes - 4972 (source: NCBI BLink).  protein_id AT1G08980.1p  transcript_id AT1G08980.1  protein_id AT1G08980.1p  transcript_id AT1G08980.1  
At1g08985	chr1:002887329	0.0	W/2887329-2887634	AT1G08985.1 CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21920.1); Has 18 Blast hits to 18 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G08985.1p  transcript_id AT1G08985.1  protein_id AT1G08985.1p  transcript_id AT1G08985.1  
At1g08990	chr1:002888753	0.0	W/2888753-2889500,2889638-2890104,2890268-2890753	AT1G08990.1 CDS  gene_syn F7G19.14, F7G19_14, PGSIP5, PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5  gene PGSIP5  go_component endomembrane system|GO:0012505||IEA  go_process biosynthetic process|GO:0009058||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5); transferase, transferring glycosyl groups  note PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5 (PGSIP5); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: PGSIP4 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 4); transferase, transferring glycosyl groups (TAIR:AT1G54940.1); Has 910 Blast hits to 906 proteins in 200 species: Archae - 0; Bacteria - 63; Metazoa - 225; Fungi - 189; Plants - 305; Viruses - 70; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G08990.1p  transcript_id AT1G08990.1  protein_id AT1G08990.1p  transcript_id AT1G08990.1  
At1g09000	chr1:002891111	0.0	W/2891111-2891407,2891524-2891565,2891662-2891727,2891828-2891938,2892018-2892098,2892182-2892259,2892400-2892482,2892624-2892705,2892787-2892887,2892999-2893038,2893123-2893182,2893267-2893316,2893415-2893634,2893751-2893921,2894015-2894367,2894630-2894700,2894893-2894987	AT1G09000.1 CDS  gene_syn ANP1, ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1, F7G19.13, F7G19_13, MAP KINASE KINASE KINASE 1, MAPKKK1  gene ANP1  function NPK1-related protein kinase 1S  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|10717008|IDA  go_process flower development|GO:0009908|12034900|IGI  go_function MAP kinase kinase kinase activity|GO:0004709|9263451|ISS  go_function kinase activity|GO:0016301||ISS  product ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1); MAP kinase kinase kinase/ kinase  note ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1 (ANP1); FUNCTIONS IN: MAP kinase kinase kinase activity, kinase activity; INVOLVED IN: flower development, response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ANP2; MAP kinase kinase kinase/ kinase (TAIR:AT1G54960.1); Has 98616 Blast hits to 96872 proteins in 3355 species: Archae - 75; Bacteria - 8500; Metazoa - 43415; Fungi - 8804; Plants - 19104; Viruses - 503; Other Eukaryotes - 18215 (source: NCBI BLink).  protein_id AT1G09000.1p  transcript_id AT1G09000.1  protein_id AT1G09000.1p  transcript_id AT1G09000.1  
At1g09010	chr1:002895259	0.0	C/2895259-2895993,2896146-2896373,2896541-2897185,2897266-2897470,2897557-2897726,2897840-2898070,2898181-2898229,2898305-2898363,2898448-2898672,2898762-2898900,2899139-2899287	AT1G09010.1 CDS  gene_syn F7G19.12, F7G19_12  go_component vacuole|GO:0005773|15539469|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycoside hydrolase family 2 protein  note glycoside hydrolase family 2 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycoside hydrolase, families 2 and 20, immunoglobulin-like beta-sandwich (InterPro:IPR013812), Galactose-binding like (InterPro:IPR008979); Has 2679 Blast hits to 2667 proteins in 658 species: Archae - 2; Bacteria - 1822; Metazoa - 211; Fungi - 187; Plants - 24; Viruses - 0; Other Eukaryotes - 433 (source: NCBI BLink).  protein_id AT1G09010.1p  transcript_id AT1G09010.1  protein_id AT1G09010.1p  transcript_id AT1G09010.1  
At1g09020	chr1:002900149	0.0	C/2900149-2900243,2900348-2900465,2900658-2900727,2900815-2900878,2901266-2901439,2901728-2901872,2902037-2902171,2902352-2902441,2902652-2902711,2902839-2902961,2903243-2903419,2903853-2903940,2904088-2904212	AT1G09020.1 CDS  gene_syn ATSNF4, F7G19.11, F7G19_11, HOMOLOG OF YEAST SUCROSE NONFERMENTING 4, PUTATIVE ACTIVATOR SUBUNIT OF SNF1-RELATED PROTEIN KINASE SNF4, SNF4  gene SNF4  function putative activator subunit of SNF1-related protein kinase  go_process cellular response to glucose starvation|GO:0042149|10929106|IDA  go_function protein kinase activator activity|GO:0030295|10929106|ISS  product SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator  note HOMOLOG OF YEAST SUCROSE NONFERMENTING 4 (SNF4); FUNCTIONS IN: protein kinase activator activity; INVOLVED IN: cellular response to glucose starvation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: 5 -AMP-activated protein kinase-related (TAIR:AT1G27070.1); Has 997 Blast hits to 990 proteins in 184 species: Archae - 8; Bacteria - 62; Metazoa - 510; Fungi - 205; Plants - 126; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G09020.1p  transcript_id AT1G09020.1  protein_id AT1G09020.1p  transcript_id AT1G09020.1  
At1g09026	chr1:002907124	0.0	W/2907124-2907279	AT1G09026.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G09026.1p  transcript_id AT1G09026.1  protein_id AT1G09026.1p  transcript_id AT1G09026.1  
At1g09030	chr1:002908611	0.0	C/2908611-2909030	AT1G09030.1 CDS  gene_syn F7G19.10, F7G19_10, NF-YB4, NUCLEAR FACTOR Y, SUBUNIT B4  gene NF-YB4  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product NF-YB4 (NUCLEAR FACTOR Y, SUBUNIT B4); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT B4 (NF-YB4); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5); transcription factor (TAIR:AT2G47810.1); Has 986 Blast hits to 986 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 384; Fungi - 232; Plants - 286; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G09030.1p  transcript_id AT1G09030.1  protein_id AT1G09030.1p  transcript_id AT1G09030.1  
At1g09040	chr1:002912362	0.0	W/2912362-2913087,2913165-2915174	AT1G09040.1 CDS  gene_syn F7G19.9, F7G19_9  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09050.1); Has 533 Blast hits to 493 proteins in 75 species: Archae - 2; Bacteria - 8; Metazoa - 323; Fungi - 23; Plants - 43; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G09040.1p  transcript_id AT1G09040.1  protein_id AT1G09040.1p  transcript_id AT1G09040.1  
At1g09050	chr1:002918031	0.0	W/2918031-2918756,2918834-2920858	AT1G09050.1 CDS  gene_syn F7G19.8, F7G19_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1); Has 455 Blast hits to 403 proteins in 85 species: Archae - 0; Bacteria - 59; Metazoa - 236; Fungi - 10; Plants - 40; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G09050.1p  transcript_id AT1G09050.1  protein_id AT1G09050.1p  transcript_id AT1G09050.1  
At1g09060	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925212	AT1G09060.1 CDS  gene_syn F7G19.7, F7G19_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 767 Blast hits to 730 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 20; Plants - 372; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G09060.1p  transcript_id AT1G09060.1  protein_id AT1G09060.1p  transcript_id AT1G09060.1  
At1g09060	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925212	AT1G09060.2 CDS  gene_syn F7G19.7, F7G19_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 767 Blast hits to 730 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 20; Plants - 372; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G09060.2p  transcript_id AT1G09060.2  protein_id AT1G09060.2p  transcript_id AT1G09060.2  
At1g09060	chr1:002921235	0.0	C/2921235-2921337,2921439-2921509,2921610-2921729,2921818-2921903,2921993-2922062,2922155-2922526,2922664-2922993,2923072-2923717,2923826-2923880,2923973-2924105,2924209-2924308,2924406-2924548,2924649-2925254	AT1G09060.3 CDS  gene_syn F7G19.7, F7G19_7  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription factor activity|GO:0003700||ISS  product transcription factor jumonji (jmjC) domain-containing protein  note transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 767 Blast hits to 730 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 336; Fungi - 20; Plants - 372; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G09060.3p  transcript_id AT1G09060.3  protein_id AT1G09060.3p  transcript_id AT1G09060.3  
At1g09070	chr1:002927767	0.0	W/2927767-2928741	AT1G09070.1 CDS  gene_syn (AT)SRC2, F7G19.6, F7G19_6, SOYBEAN GENE REGULATED BY COLD-2, SRC2  gene SRC2  function SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.  go_component protein storage vacuole|GO:0000326|16227454|IDA  go_component endoplasmic reticulum|GO:0005783|16227454|IDA  go_process protein targeting to vacuole|GO:0006623|16227454|TAS  go_function protein binding|GO:0005515|16227454|IPI  product SRC2 (SOYBEAN GENE REGULATED BY COLD-2); protein binding  note SOYBEAN GENE REGULATED BY COLD-2 (SRC2); FUNCTIONS IN: protein binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: endoplasmic reticulum, protein storage vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: XYPPX repeat (InterPro:IPR006031), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G16510.1); Has 22005 Blast hits to 13300 proteins in 863 species: Archae - 4; Bacteria - 1898; Metazoa - 13015; Fungi - 2688; Plants - 2401; Viruses - 77; Other Eukaryotes - 1922 (source: NCBI BLink).  protein_id AT1G09070.1p  transcript_id AT1G09070.1  protein_id AT1G09070.1p  transcript_id AT1G09070.1  
At1g09080	chr1:002929268	0.0	C/2929268-2929754,2929844-2930081,2930177-2930899,2931069-2931280,2931376-2931670,2931732-2931804	AT1G09080.1 CDS  gene_syn BIP3, F7G19.5, F7G19_5  gene BIP3  go_function ATP binding|GO:0005524||IEA  go_component endoplasmic reticulum lumen|GO:0005788|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process protein folding|GO:0006457||ISS  go_process response to heat|GO:0009408|8888624|IDA  product BIP3; ATP binding  note BIP3; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: BIP1; ATP binding (TAIR:AT5G28540.1); Has 26457 Blast hits to 25988 proteins in 3101 species: Archae - 107; Bacteria - 10098; Metazoa - 3384; Fungi - 1229; Plants - 717; Viruses - 260; Other Eukaryotes - 10662 (source: NCBI BLink).  protein_id AT1G09080.1p  transcript_id AT1G09080.1  protein_id AT1G09080.1p  transcript_id AT1G09080.1  
At1g09090	chr1:002932743	0.0	W/2932743-2933127,2933284-2933443,2933558-2933606,2933696-2933809,2933952-2934389,2934549-2934935,2935061-2935156,2935268-2935383,2935467-2935569,2935644-2935717,2935797-2936296,2936386-2936495	AT1G09090.2 CDS  gene_syn ATRBOHB, F7G19.4, F7G19_4, respiratory burst oxidase homolog B  gene ATRBOHB  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function iron ion binding|GO:0005506||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA  go_process defense response|GO:0006952|9490748|TAS  go_process defense response|GO:0006952|9628030|TAS  go_process response to heat|GO:0009408|15923322|IMP  product ATRBOHB (respiratory burst oxidase homolog B); FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase  note respiratory burst oxidase homolog B (ATRBOHB); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to heat, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand type (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D); NAD(P)H oxidase (TAIR:AT5G47910.1); Has 1565 Blast hits to 1460 proteins in 219 species: Archae - 2; Bacteria - 104; Metazoa - 602; Fungi - 472; Plants - 265; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G09090.2p  transcript_id AT1G09090.2  protein_id AT1G09090.2p  transcript_id AT1G09090.2  
At1g09090	chr1:002932743	0.0	W/2932743-2933127,2933284-2933443,2933558-2933606,2933696-2933809,2933952-2934389,2934549-2934935,2935061-2935156,2935268-2935383,2935467-2935590	AT1G09090.1 CDS  gene_syn ATRBOHB, F7G19.4, F7G19_4, respiratory burst oxidase homolog B  gene ATRBOHB  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function iron ion binding|GO:0005506||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA  go_process defense response|GO:0006952|9490748|TAS  go_process defense response|GO:0006952|9628030|TAS  go_process response to heat|GO:0009408|15923322|IMP  product ATRBOHB (respiratory burst oxidase homolog B); FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase  note respiratory burst oxidase homolog B (ATRBOHB); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to heat, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand type (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), FAD-binding 8 (InterPro:IPR013112), EF-HAND 2 (InterPro:IPR018249), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D); NAD(P)H oxidase (TAIR:AT5G47910.1); Has 1090 Blast hits to 1043 proteins in 174 species: Archae - 2; Bacteria - 49; Metazoa - 532; Fungi - 167; Plants - 257; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G09090.1p  transcript_id AT1G09090.1  protein_id AT1G09090.1p  transcript_id AT1G09090.1  
At1g09100	chr1:002936675	0.0	C/2936675-2936752,2936832-2936972,2937153-2937272,2937354-2937441,2937519-2937637,2937734-2937925,2938024-2938215,2938334-2938441,2938681-2938797,2939142-2939258	AT1G09100.1 CDS  gene_syn 26S proteasome AAA-ATPase subunit RPT5B, F7G19.2, F7G19_2, RPT5B  gene RPT5B  function Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process embryo sac development|GO:0009553|19223514|IGI  go_process pollen development|GO:0009555|19223514|IGI  go_process glucose mediated signaling|GO:0010255|17081979|IMP  go_process proteasomal protein catabolic process|GO:0010498|19223514|IGI  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function ATPase activity|GO:0016887||ISS  product RPT5B (26S proteasome AAA-ATPase subunit RPT5B); ATPase/ calmodulin binding  note 26S proteasome AAA-ATPase subunit RPT5B (RPT5B); FUNCTIONS IN: calmodulin binding, ATPase activity; INVOLVED IN: glucose mediated signaling, proteasomal protein catabolic process, embryo sac development, pollen development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A); ATPase/ calmodulin binding (TAIR:AT3G05530.1); Has 23018 Blast hits to 21463 proteins in 1801 species: Archae - 827; Bacteria - 6857; Metazoa - 4158; Fungi - 2385; Plants - 1712; Viruses - 37; Other Eukaryotes - 7042 (source: NCBI BLink).  protein_id AT1G09100.1p  transcript_id AT1G09100.1  protein_id AT1G09100.1p  transcript_id AT1G09100.1  
At1g09110	chr1:002939417	0.0	W/2939417-2939488	AT1G09110.1 tRNA  gene_syn 50888.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT1G09110.1  
At1g09130	chr1:002940063	0.0	C/2940063-2940152,2940365-2940448,2940523-2940576,2940797-2940870,2940958-2941054,2941213-2941272,2941351-2941473,2941547-2941648,2941909-2942217	AT1G09130.1 CDS  gene_syn F7G19.1, F7G19_1  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  product ATP-dependent Clp protease proteolytic subunit, putative  note ATP-dependent Clp protease proteolytic subunit, putative; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPR1; serine-type endopeptidase (TAIR:AT1G49970.1); Has 8201 Blast hits to 8199 proteins in 1643 species: Archae - 0; Bacteria - 4098; Metazoa - 115; Fungi - 50; Plants - 684; Viruses - 3; Other Eukaryotes - 3251 (source: NCBI BLink).  protein_id AT1G09130.1p  transcript_id AT1G09130.1  protein_id AT1G09130.1p  transcript_id AT1G09130.1  
At1g09130	chr1:002940063	0.0	C/2940063-2940152,2940365-2940448,2940523-2940576,2940797-2940870,2940958-2941054,2941213-2941272,2941351-2941473,2941547-2941648,2941909-2942217	AT1G09130.2 CDS  gene_syn F7G19.1, F7G19_1  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  product ATP-dependent Clp protease proteolytic subunit, putative  note ATP-dependent Clp protease proteolytic subunit, putative; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPR1; serine-type endopeptidase (TAIR:AT1G49970.1); Has 8201 Blast hits to 8199 proteins in 1643 species: Archae - 0; Bacteria - 4098; Metazoa - 115; Fungi - 50; Plants - 684; Viruses - 3; Other Eukaryotes - 3251 (source: NCBI BLink).  protein_id AT1G09130.2p  transcript_id AT1G09130.2  protein_id AT1G09130.2p  transcript_id AT1G09130.2  
At1g09140	chr1:002942887	0.0	C/2942887-2942901,2943169-2943226,2944169-2944246,2944344-2944456,2944530-2944586,2944730-2944779,2944903-2944960,2945068-2945114,2945200-2945302,2945382-2945456,2945543-2945608,2945732-2945818	AT1G09140.1 CDS  gene_syn ATSRP30, ATSRP30.1, ATSRP30.2, SERINE-ARGININE PROTEIN 30, T12M4.19, T12M4_19  function Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.  go_function RNA binding|GO:0003723||ISS  product SF2/ASF-like splicing modulator (SRP30)  note SF2/ASF-like splicing modulator (SRP30); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SR1; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G02840.3); Has 8689 Blast hits to 7061 proteins in 333 species: Archae - 0; Bacteria - 183; Metazoa - 5692; Fungi - 854; Plants - 976; Viruses - 86; Other Eukaryotes - 898 (source: NCBI BLink).  protein_id AT1G09140.1p  transcript_id AT1G09140.1  protein_id AT1G09140.1p  transcript_id AT1G09140.1  
At1g09140	chr1:002943528	0.0	C/2943528-2943564,2944169-2944246,2944344-2944456,2944530-2944586,2944730-2944779,2944903-2944960,2945068-2945114,2945200-2945302,2945382-2945456,2945543-2945608,2945732-2945818	AT1G09140.2 CDS  gene_syn ATSRP30, ATSRP30.1, ATSRP30.2, SERINE-ARGININE PROTEIN 30, T12M4.19, T12M4_19  function Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.  go_function RNA binding|GO:0003723||ISS  product SF2/ASF-like splicing modulator (SRP30)  note SF2/ASF-like splicing modulator (SRP30); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SR1; RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT1G02840.3); Has 6059 Blast hits to 5657 proteins in 304 species: Archae - 0; Bacteria - 171; Metazoa - 3682; Fungi - 718; Plants - 881; Viruses - 6; Other Eukaryotes - 601 (source: NCBI BLink).  protein_id AT1G09140.2p  transcript_id AT1G09140.2  protein_id AT1G09140.2p  transcript_id AT1G09140.2  
At1g09150	chr1:002946599	0.0	W/2946599-2946609,2947210-2947291,2947388-2947455,2947557-2947654,2948174-2948310,2948393-2948460,2948710-2948773,2948891-2948908	AT1G09150.1 CDS  gene_syn T12M4.18, T12M4_18  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein  note pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PUA-like (InterPro:IPR015947), PUA (InterPro:IPR002478), Translation machinery-associated RNA binding protein, predicted (InterPro:IPR016437), Uncharacterized domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 649 Blast hits to 647 proteins in 208 species: Archae - 99; Bacteria - 0; Metazoa - 263; Fungi - 102; Plants - 42; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G09150.1p  transcript_id AT1G09150.1  protein_id AT1G09150.1p  transcript_id AT1G09150.1  
At1g09155	chr1:002949831	0.0	C/2949831-2950332,2950407-2950525,2950594-2950842	AT1G09155.1 CDS  gene_syn AtPP2-B15, Phloem protein 2-B15  gene AtPP2-B15  go_component endomembrane system|GO:0012505||IEA  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-B15 (Phloem protein 2-B15); carbohydrate binding  note Phloem protein 2-B15 (AtPP2-B15); FUNCTIONS IN: carbohydrate binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: AtPP2-B13 (Phloem protein 2-B13); carbohydrate binding (TAIR:AT1G56240.1); Has 316 Blast hits to 309 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09155.1p  transcript_id AT1G09155.1  protein_id AT1G09155.1p  transcript_id AT1G09155.1  
At1g09157	chr1:002951665	0.0	C/2951665-2952396	AT1G09157.1 CDS  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39650.1); Has 153 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09157.1p  transcript_id AT1G09157.1  protein_id AT1G09157.1p  transcript_id AT1G09157.1  
At1g09160	chr1:002953199	0.0	C/2953199-2953418,2953530-2953762,2953846-2953971,2954055-2954162,2954290-2954507,2954600-2954771,2954850-2955059	AT1G09160.1 CDS  gene_syn T12M4.15, T12M4_15  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT1G68410.2); Has 3607 Blast hits to 3606 proteins in 325 species: Archae - 2; Bacteria - 224; Metazoa - 1014; Fungi - 326; Plants - 1178; Viruses - 7; Other Eukaryotes - 856 (source: NCBI BLink).  protein_id AT1G09160.1p  transcript_id AT1G09160.1  protein_id AT1G09160.1p  transcript_id AT1G09160.1  
At1g09160	chr1:002953199	0.0	C/2953199-2953418,2953530-2953762,2953846-2953971,2954055-2954162,2954290-2954507,2954600-2954771,2954850-2955059	AT1G09160.2 CDS  gene_syn T12M4.15, T12M4_15  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C-related / PP2C-related (TAIR:AT1G68410.2); Has 3607 Blast hits to 3606 proteins in 325 species: Archae - 2; Bacteria - 224; Metazoa - 1014; Fungi - 326; Plants - 1178; Viruses - 7; Other Eukaryotes - 856 (source: NCBI BLink).  protein_id AT1G09160.2p  transcript_id AT1G09160.2  protein_id AT1G09160.2p  transcript_id AT1G09160.2  
At1g09170	chr1:002956589	0.0	C/2956589-2956724,2956806-2957269,2957371-2957571,2957667-2957830,2957969-2958222,2958484-2958640,2958846-2958921,2959016-2959122,2959303-2959479,2959592-2959687,2959827-2959908,2960014-2960178,2960310-2960402,2960511-2960579,2960666-2960737,2960821-2961069,2961206-2961349,2961592-2961791,2962081-2962207	AT1G09170.1 CDS  gene_syn T12M4.14, T12M4_14  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: shoot, male gametophyte, flower, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATK4 (ARABIDOPSIS THALIANA KINESIN 4); ATPase/ microtubule binding / microtubule motor (TAIR:AT5G27000.1); Has 8470 Blast hits to 7806 proteins in 330 species: Archae - 0; Bacteria - 66; Metazoa - 4315; Fungi - 989; Plants - 928; Viruses - 0; Other Eukaryotes - 2172 (source: NCBI BLink).  protein_id AT1G09170.1p  transcript_id AT1G09170.1  protein_id AT1G09170.1p  transcript_id AT1G09170.1  
At1g09176	chr1:002964152	0.0	W/2964152-2964604	AT1G09176.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 84679 Blast hits to 16834 proteins in 1037 species: Archae - 92; Bacteria - 32279; Metazoa - 23225; Fungi - 4568; Plants - 8799; Viruses - 1044; Other Eukaryotes - 14672 (source: NCBI BLink).  protein_id AT1G09176.1p  transcript_id AT1G09176.1  protein_id AT1G09176.1p  transcript_id AT1G09176.1  
At1g09180	chr1:002965147	0.0	W/2965147-2965275,2965384-2965515,2965621-2965941	AT1G09180.1 CDS  gene_syn ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1, ATSAR1, ATSARA1A, SECRETION-ASSOCIATED RAS 1, T12M4.12, T12M4_12  gene ATSARA1A  function A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.  go_component chloroplast|GO:0009507|15028209|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_function GTP binding|GO:0005525|12644670|ISS  product ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1); GTP binding  note ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1 (ATSARA1A); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein SAR1 (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ATSAR1B (SECRETION-ASSOCIATED RAS 1 B); GTP binding (TAIR:AT1G56330.1); Has 5162 Blast hits to 5159 proteins in 298 species: Archae - 2; Bacteria - 34; Metazoa - 2772; Fungi - 847; Plants - 666; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).  protein_id AT1G09180.1p  transcript_id AT1G09180.1  protein_id AT1G09180.1p  transcript_id AT1G09180.1  
At1g09190	chr1:002966263	0.0	C/2966263-2967717	AT1G09190.1 CDS  gene_syn T12M4.11, T12M4_11  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, sperm cell, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G56310.1); Has 12606 Blast hits to 4809 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 33; Plants - 12368; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT1G09190.1p  transcript_id AT1G09190.1  protein_id AT1G09190.1p  transcript_id AT1G09190.1  
At1g09195	chr1:002968720	0.0	C/2968720-2968758,2968970-2969077,2969375-2969494,2969575-2969655,2969763-2969804,2969982-2970134,2970363-2970721,2971078-2971138	AT1G09195.1 CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ppx/GppA phosphatase (InterPro:IPR003695); Has 1514 Blast hits to 1514 proteins in 543 species: Archae - 16; Bacteria - 1249; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).  protein_id AT1G09195.1p  transcript_id AT1G09195.1  protein_id AT1G09195.1p  transcript_id AT1G09195.1  
At1g09200	chr1:002971722	0.0	C/2971722-2972132	AT1G09200.1 CDS  gene_syn T12M4.9  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3  note histone H3; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, chloroplast, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G65360.1); Has 10220 Blast hits to 10217 proteins in 5279 species: Archae - 0; Bacteria - 0; Metazoa - 7338; Fungi - 1307; Plants - 999; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).  protein_id AT1G09200.1p  transcript_id AT1G09200.1  protein_id AT1G09200.1p  transcript_id AT1G09200.1  
At1g09210	chr1:002973217	0.0	C/2973217-2973228,2973326-2973442,2973527-2973556,2973718-2973765,2973859-2973954,2974040-2974107,2974615-2974672,2974755-2974841,2974928-2975032,2975206-2975464,2975562-2975754,2975849-2975956,2976562-2976655	AT1G09210.1 CDS  gene_syn T12M4.8, T12M4_8  go_component vacuole|GO:0005773|15539469|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function calcium ion binding|GO:0005509||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function calcium ion binding|GO:0005509||ISS  product calreticulin 2 (CRT2)  note calreticulin 2 (CRT2); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: mitochondrion, endoplasmic reticulum, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: CRT1 (CALRETICULIN 1); calcium ion binding / unfolded protein binding (TAIR:AT1G56340.2); Has 6897 Blast hits to 3331 proteins in 371 species: Archae - 6; Bacteria - 265; Metazoa - 3811; Fungi - 490; Plants - 317; Viruses - 187; Other Eukaryotes - 1821 (source: NCBI BLink).  protein_id AT1G09210.1p  transcript_id AT1G09210.1  protein_id AT1G09210.1p  transcript_id AT1G09210.1  
At1g09220	chr1:002977952	0.0	C/2977952-2978968	AT1G09220.1 CDS  gene_syn T12M4.7, T12M4_7  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G56310.1); Has 11726 Blast hits to 4343 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 10; Plants - 11583; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G09220.1p  transcript_id AT1G09220.1  protein_id AT1G09220.1p  transcript_id AT1G09220.1  
At1g09230	chr1:002979637	0.0	C/2979637-2979723,2979877-2979942,2980022-2980080,2980211-2980298,2980605-2980778,2980851-2981012,2981258-2981398,2981541-2981622,2981778-2981987,2982090-2982161,2982376-2982563	AT1G09230.1 CDS  gene_syn T12M4.6, T12M4_6  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 680 Blast hits to 677 proteins in 103 species: Archae - 0; Bacteria - 6; Metazoa - 512; Fungi - 46; Plants - 61; Viruses - 1; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G09230.1p  transcript_id AT1G09230.1  protein_id AT1G09230.1p  transcript_id AT1G09230.1  
At1g09240	chr1:002984950	0.0	W/2984950-2985912	AT1G09240.1 CDS  gene_syn ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, ATNAS3, NAS3, NICOTIANAMINE SYNTHASE 3, T12M4.5, T12M4_5  gene NAS3  function Encodes a nicotianamine synthase.  go_process nicotianamine biosynthetic process|GO:0030418||IDA  go_function nicotianamine synthase activity|GO:0030410||IDA  product NAS3 (NICOTIANAMINE SYNTHASE 3); nicotianamine synthase  note NICOTIANAMINE SYNTHASE 3 (NAS3); FUNCTIONS IN: nicotianamine synthase activity; INVOLVED IN: nicotianamine biosynthetic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Nicotianamine synthase (InterPro:IPR004298); BEST Arabidopsis thaliana protein match is: NAS4 (NICOTIANAMINE SYNTHASE 4); nicotianamine synthase (TAIR:AT1G56430.1); Has 133 Blast hits to 131 proteins in 31 species: Archae - 14; Bacteria - 2; Metazoa - 0; Fungi - 17; Plants - 99; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G09240.1p  transcript_id AT1G09240.1  protein_id AT1G09240.1p  transcript_id AT1G09240.1  
At1g09245	chr1:002986948	0.0	C/2986948-2987367	AT1G09245.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51250.1); Has 37 Blast hits to 37 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09245.1p  transcript_id AT1G09245.1  protein_id AT1G09245.1p  transcript_id AT1G09245.1  
At1g09250	chr1:002989509	0.0	W/2989509-2990132	AT1G09250.1 CDS  gene_syn T12M4.4, T12M4_4  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G06590.2); Has 120 Blast hits to 120 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09250.1p  transcript_id AT1G09250.1  protein_id AT1G09250.1p  transcript_id AT1G09250.1  
At1g09260	chr1:002993404	0.0	W/2993404-2993820	AT1G09260.1 CDS  gene_syn T12M4.3, T12M4_3  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 1800 Blast hits to 1800 proteins in 469 species: Archae - 31; Bacteria - 623; Metazoa - 528; Fungi - 152; Plants - 208; Viruses - 3; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G09260.1p  transcript_id AT1G09260.1  protein_id AT1G09260.1p  transcript_id AT1G09260.1  
At1g09270	chr1:002994506	0.0	W/2994506-2994736,2995147-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.1 CDS  gene_syn IMPA-4, IMPORTIN ALPHA ISOFORM 4, T12M4.2, T12M4_2  gene IMPA-4  function Protein interacts with Agrobacterium proteins VirD2 and VirE2.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_process intracellular protein transport in host|GO:0030581|18836040|IPI  go_process host response to induction by symbiont of tumor, nodule or growth in host|GO:0080034|18836040|IMP  go_function protein transporter activity|GO:0008565||ISS  product IMPA-4 (IMPORTIN ALPHA ISOFORM 4); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 4 (IMPA-4); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, intracellular protein transport in host, host response to induction by symbiont of tumor, nodule or growth in host; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 2981 Blast hits to 2230 proteins in 218 species: Archae - 2; Bacteria - 6; Metazoa - 1458; Fungi - 408; Plants - 587; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT1G09270.1p  transcript_id AT1G09270.1  protein_id AT1G09270.1p  transcript_id AT1G09270.1  
At1g09270	chr1:002994506	0.0	W/2994506-2994736,2995147-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.2 CDS  gene_syn IMPA-4, IMPORTIN ALPHA ISOFORM 4, T12M4.2, T12M4_2  gene IMPA-4  function Protein interacts with Agrobacterium proteins VirD2 and VirE2.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_process intracellular protein transport in host|GO:0030581|18836040|IPI  go_process host response to induction by symbiont of tumor, nodule or growth in host|GO:0080034|18836040|IMP  go_function protein transporter activity|GO:0008565||ISS  product IMPA-4 (IMPORTIN ALPHA ISOFORM 4); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 4 (IMPA-4); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, intracellular protein transport in host, host response to induction by symbiont of tumor, nodule or growth in host; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 2981 Blast hits to 2230 proteins in 218 species: Archae - 2; Bacteria - 6; Metazoa - 1458; Fungi - 408; Plants - 587; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT1G09270.2p  transcript_id AT1G09270.2  protein_id AT1G09270.2p  transcript_id AT1G09270.2  
At1g09270	chr1:002995162	0.0	W/2995162-2995243,2995345-2995436,2995537-2995668,2995893-2996078,2996227-2996390,2996638-2996716,2996801-2996929,2997202-2997329,2997455-2997833	AT1G09270.3 CDS  gene_syn IMPA-4, IMPORTIN ALPHA ISOFORM 4, T12M4.2, T12M4_2  gene IMPA-4  function Protein interacts with Agrobacterium proteins VirD2 and VirE2.  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_process intracellular protein transport in host|GO:0030581|18836040|IPI  go_process host response to induction by symbiont of tumor, nodule or growth in host|GO:0080034|18836040|IMP  go_function protein transporter activity|GO:0008565||ISS  product IMPA-4 (IMPORTIN ALPHA ISOFORM 4); binding / protein transporter  note IMPORTIN ALPHA ISOFORM 4 (IMPA-4); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, intracellular protein transport in host, host response to induction by symbiont of tumor, nodule or growth in host; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding region (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter (TAIR:AT3G06720.2); Has 2915 Blast hits to 2179 proteins in 215 species: Archae - 2; Bacteria - 4; Metazoa - 1438; Fungi - 405; Plants - 546; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT1G09270.3p  transcript_id AT1G09270.3  protein_id AT1G09270.3p  transcript_id AT1G09270.3  
At1g09280	chr1:002998209	0.0	C/2998209-2998915,2999028-2999127,2999204-2999336,2999426-2999508,2999587-2999668,2999755-2999935,3000028-3000133,3000556-3000717,3001062-3001253	AT1G09280.1 CDS  gene_syn T12M4.1, T12M4_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Protein of unknown function DUF341 (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT2G40760.1); Has 4342 Blast hits to 4339 proteins in 940 species: Archae - 0; Bacteria - 1695; Metazoa - 138; Fungi - 282; Plants - 108; Viruses - 0; Other Eukaryotes - 2119 (source: NCBI BLink).  protein_id AT1G09280.1p  transcript_id AT1G09280.1  protein_id AT1G09280.1p  transcript_id AT1G09280.1  
At1g09290	chr1:003001682	0.0	C/3001682-3001840,3001926-3002102,3002192-3002321,3002641-3002827,3002922-3003060,3003260-3003306,3003508-3003715	AT1G09290.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 42 Blast hits to 42 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G09290.1p  transcript_id AT1G09290.1  protein_id AT1G09290.1p  transcript_id AT1G09290.1  
At1g09300	chr1:003003981	0.0	W/3003981-3004028,3004361-3004435,3004515-3004778,3004868-3004960,3005073-3005279,3005775-3005878,3005993-3006059,3006141-3006248,3006612-3006704,3006999-3007083,3007290-3007360,3007686-3007741,3007921-3008131	AT1G09300.1 CDS  gene_syn T31J12.2, T31J12_2  go_component mitochondrion|GO:0005739||IEA  go_process proteolysis|GO:0006508||IEA  go_process cellular process|GO:0009987||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function metallopeptidase activity|GO:0008237||ISS  product metallopeptidase M24 family protein  note metallopeptidase M24 family protein; FUNCTIONS IN: metallopeptidase activity, manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: aminopeptidase/ manganese ion binding (TAIR:AT4G29490.1); Has 10472 Blast hits to 10446 proteins in 1515 species: Archae - 187; Bacteria - 5828; Metazoa - 520; Fungi - 371; Plants - 118; Viruses - 0; Other Eukaryotes - 3448 (source: NCBI BLink).  protein_id AT1G09300.1p  transcript_id AT1G09300.1  protein_id AT1G09300.1p  transcript_id AT1G09300.1  
At1g09300	chr1:003004485	0.0	W/3004485-3004778,3004868-3004960,3005073-3005279,3005775-3005878,3005993-3006059,3006141-3006248,3006612-3006704,3006999-3007083,3007290-3007360,3007686-3007741,3007921-3008131	AT1G09300.2 CDS  gene_syn T31J12.2, T31J12_2  go_process proteolysis|GO:0006508||IEA  go_process cellular process|GO:0009987||IEA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function metallopeptidase activity|GO:0008237||ISS  product metallopeptidase M24 family protein  note metallopeptidase M24 family protein; FUNCTIONS IN: metallopeptidase activity, manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: aminopeptidase/ manganese ion binding (TAIR:AT4G29490.1); Has 10502 Blast hits to 10476 proteins in 1514 species: Archae - 191; Bacteria - 5847; Metazoa - 520; Fungi - 373; Plants - 118; Viruses - 0; Other Eukaryotes - 3453 (source: NCBI BLink).  protein_id AT1G09300.2p  transcript_id AT1G09300.2  protein_id AT1G09300.2p  transcript_id AT1G09300.2  
At1g09310	chr1:003009109	0.0	W/3009109-3009648	AT1G09310.1 CDS  gene_syn T31J12.3, T31J12_3  go_component apoplast|GO:0048046|18538804|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56580.1); Has 197 Blast hits to 195 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09310.1p  transcript_id AT1G09310.1  protein_id AT1G09310.1p  transcript_id AT1G09310.1  
At1g09320	chr1:003010270	0.0	C/3010270-3010284,3010430-3010885,3011018-3011494,3011623-3012228	AT1G09320.1 CDS  gene_syn T31J12.4, T31J12_4  go_component chloroplast|GO:0009507||IEA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT3G06520.1); Has 424 Blast hits to 179 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 3; Plants - 387; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G09320.1p  transcript_id AT1G09320.1  protein_id AT1G09320.1p  transcript_id AT1G09320.1  
At1g09330	chr1:003013003	0.0	C/3013003-3013091,3013246-3013372,3014044-3014103,3014225-3014428,3014518-3014580,3014886-3014903	AT1G09330.1 CDS  gene_syn T31J12.5, T31J12_5  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 381 Blast hits to 381 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 100; Plants - 39; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G09330.1p  transcript_id AT1G09330.1  protein_id AT1G09330.1p  transcript_id AT1G09330.1  
At1g09340	chr1:003015473	0.0	W/3015473-3015574,3016035-3016169,3016248-3016334,3016458-3016548,3016660-3016714,3016816-3016876,3017045-3017266,3017408-3017524,3017677-3017766,3017859-3018035	AT1G09340.1 CDS  gene_syn CHLOROPLAST RNA BINDING, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, CRB, CRUCIFERIN B, CSP41B  gene CRB  function Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component ribosome|GO:0005840|18398686|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process rRNA processing|GO:0006364|18398686|IGI  go_process circadian rhythm|GO:0007623|17617174|IEP  go_process circadian rhythm|GO:0007623|17617174|IMP  go_process response to cold|GO:0009409|16923014|IEP  go_process chloroplast organization|GO:0009658|17617174|IMP  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  product CRB (CHLOROPLAST RNA BINDING); binding / catalytic/ coenzyme binding  note CHLOROPLAST RNA BINDING (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding (TAIR:AT3G63140.1); Has 3710 Blast hits to 3710 proteins in 718 species: Archae - 207; Bacteria - 1968; Metazoa - 95; Fungi - 41; Plants - 139; Viruses - 2; Other Eukaryotes - 1258 (source: NCBI BLink).  protein_id AT1G09340.1p  transcript_id AT1G09340.1  protein_id AT1G09340.1p  transcript_id AT1G09340.1  
At1g09350	chr1:003019888	0.0	W/3019888-3020193,3020284-3020607,3020761-3020912,3020992-3021214	AT1G09350.1 CDS  gene_syn Arabidopsis thaliana galactinol synthase 3, AtGolS3, F14J9.1, F14J9_1  gene AtGolS3  go_component cellular_component|GO:0005575||ND  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product AtGolS3 (Arabidopsis thaliana galactinol synthase 3); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Arabidopsis thaliana galactinol synthase 3 (AtGolS3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: AtGolS2 (Arabidopsis thaliana galactinol synthase 2); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G56600.1); Has 871 Blast hits to 870 proteins in 198 species: Archae - 0; Bacteria - 55; Metazoa - 224; Fungi - 186; Plants - 285; Viruses - 70; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G09350.1p  transcript_id AT1G09350.1  protein_id AT1G09350.1p  transcript_id AT1G09350.1  
At1g09360	chr1:003021802	0.0	W/3021802-3022368	AT1G09360.1 CDS  gene_syn F14J9.2, F14J9_2  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT1G09370.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09360.1p  transcript_id AT1G09360.1  protein_id AT1G09360.1p  transcript_id AT1G09360.1  
At1g09370	chr1:003024901	0.0	W/3024901-3025425	AT1G09370.1 CDS  gene_syn F14J9.3, F14J9_3  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, cotyledon; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G09360.1); Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09370.1p  transcript_id AT1G09370.1  protein_id AT1G09370.1p  transcript_id AT1G09370.1  
At1g09380	chr1:003026351	0.0	C/3026351-3026552,3026648-3026799,3026887-3027045,3027159-3027411,3027498-3027614,3027691-3027753,3029144-3029322	AT1G09380.1 CDS  gene_syn F14J9.4, F14J9_4  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product integral membrane family protein / nodulin MtN21-related  note integral membrane family protein / nodulin MtN21-related; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07050.1); Has 3622 Blast hits to 3602 proteins in 598 species: Archae - 50; Bacteria - 1859; Metazoa - 6; Fungi - 2; Plants - 646; Viruses - 0; Other Eukaryotes - 1059 (source: NCBI BLink).  protein_id AT1G09380.1p  transcript_id AT1G09380.1  protein_id AT1G09380.1p  transcript_id AT1G09380.1  
At1g09390	chr1:003031264	0.0	W/3031264-3031519,3032117-3032308,3032387-3032553,3032666-3032930,3033183-3033415	AT1G09390.1 CDS  gene_syn F14J9.5, F14J9_5  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G56670.1); Has 1723 Blast hits to 1705 proteins in 124 species: Archae - 0; Bacteria - 149; Metazoa - 1; Fungi - 22; Plants - 1544; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G09390.1p  transcript_id AT1G09390.1  protein_id AT1G09390.1p  transcript_id AT1G09390.1  
At1g09400	chr1:003033676	0.0	C/3033676-3034193,3034276-3034434,3034519-3034649,3034725-3034865,3034968-3034993	AT1G09400.1 CDS  gene_syn F14J9.6, F14J9_6  go_component mitochondrion|GO:0005739||IEA  product 12-oxophytodienoate reductase, putative  note 12-oxophytodienoate reductase, putative; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: OPR1; 12-oxophytodienoate reductase (TAIR:AT1G76680.1); Has 8168 Blast hits to 8147 proteins in 1106 species: Archae - 62; Bacteria - 5423; Metazoa - 29; Fungi - 540; Plants - 296; Viruses - 0; Other Eukaryotes - 1818 (source: NCBI BLink).  protein_id AT1G09400.1p  transcript_id AT1G09400.1  protein_id AT1G09400.1p  transcript_id AT1G09400.1  
At1g09410	chr1:003035443	0.0	W/3035443-3037560	AT1G09410.1 CDS  gene_syn F14J9.7, F14J9_7  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G56690.1); Has 17368 Blast hits to 5186 proteins in 148 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 27; Plants - 17053; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT1G09410.1p  transcript_id AT1G09410.1  protein_id AT1G09410.1p  transcript_id AT1G09410.1  
At1g09415	chr1:003037910	0.0	C/3037910-3038248	AT1G09415.1 CDS  gene_syn NIM1-INTERACTING 3, NIMIN-3  gene NIMIN-3  function encodes a kinase that physically interacts with NPR1/NIM1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NIMIN-3 (NIM1-INTERACTING 3)  note NIM1-INTERACTING 3 (NIMIN-3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 10; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G09415.1p  transcript_id AT1G09415.1  protein_id AT1G09415.1p  transcript_id AT1G09415.1  
At1g09421	chr1:003038631	0.0	W/3038631-3039326	AT1G09421.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G09420  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G09421.1  
At1g09420	chr1:003038640	0.0	C/3038640-3038877,3038971-3039171,3039247-3039449,3039550-3039670,3039790-3039824,3039924-3040032,3040113-3040318,3040450-3040564,3040649-3040743,3040841-3041088,3041175-3041379,3041614-3041715	AT1G09420.1 CDS  gene_syn F14J9.8, F14J9_8, G6PD4, GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4  gene G6PD4  function Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_component chloroplast|GO:0009507|15634201|ISS  go_process glucose metabolic process|GO:0006006||ISS  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS  product G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4); glucose-6-phosphate dehydrogenase  note GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4 (G6PD4); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: glucose metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282); BEST Arabidopsis thaliana protein match is: G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2); glucose-6-phosphate dehydrogenase (TAIR:AT5G13110.1); Has 5329 Blast hits to 5311 proteins in 1267 species: Archae - 0; Bacteria - 3170; Metazoa - 644; Fungi - 121; Plants - 280; Viruses - 2; Other Eukaryotes - 1112 (source: NCBI BLink).  protein_id AT1G09420.1p  transcript_id AT1G09420.1  protein_id AT1G09420.1p  transcript_id AT1G09420.1  
At1g09430	chr1:003042135	0.0	W/3042135-3042233,3042490-3042666,3042743-3042904,3043016-3043096,3043367-3043418,3043516-3043630,3043722-3043803,3043923-3044018,3044218-3044319,3044412-3044528,3044648-3044764,3044904-3044978	AT1G09430.1 CDS  gene_syn ACLA-3, ATP-CITRATE LYASE A-3, F14J9.9, F14J9_9  gene ACLA-3  function Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity.  go_component citrate lyase complex|GO:0009346|12376641|ISS  go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS  go_function ATP citrate synthase activity|GO:0003878|12376641|ISS  product ACLA-3; ATP citrate synthase  note ACLA-3; FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: acetyl-CoA biosynthetic process; LOCATED IN: citrate lyase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ACLA-1; ATP citrate synthase (TAIR:AT1G10670.2); Has 3908 Blast hits to 3907 proteins in 1019 species: Archae - 87; Bacteria - 2012; Metazoa - 210; Fungi - 94; Plants - 52; Viruses - 0; Other Eukaryotes - 1453 (source: NCBI BLink).  protein_id AT1G09430.1p  transcript_id AT1G09430.1  protein_id AT1G09430.1p  transcript_id AT1G09430.1  
At1g09440	chr1:003045513	0.0	C/3045513-3045599,3045684-3045896,3045972-3046101,3046185-3046355,3046436-3046558,3046634-3046738,3046822-3047393	AT1G09440.1 CDS  gene_syn F14J9.10, F14J9_10  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G56720.3); Has 86347 Blast hits to 85305 proteins in 3127 species: Archae - 56; Bacteria - 8006; Metazoa - 37797; Fungi - 6649; Plants - 18732; Viruses - 352; Other Eukaryotes - 14755 (source: NCBI BLink).  protein_id AT1G09440.1p  transcript_id AT1G09440.1  protein_id AT1G09440.1p  transcript_id AT1G09440.1  
At1g09450	chr1:003049066	0.0	W/3049066-3049078,3049170-3049284,3049384-3049464,3049678-3049765,3049957-3050513,3050692-3050815,3051143-3051252,3051371-3051479,3051582-3051674,3051770-3051831,3051915-3052045,3052149-3052219,3052307-3052359,3052578-3052644,3052733-3052858	AT1G09450.1 CDS  gene_syn F14J9.11, F14J9_11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product haspin-related  note haspin-related; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719); Has 225 Blast hits to 225 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 71; Plants - 17; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G09450.1p  transcript_id AT1G09450.1  protein_id AT1G09450.1p  transcript_id AT1G09450.1  
At1g09460	chr1:003053901	0.0	W/3053901-3054534,3054637-3054784,3054880-3055090	AT1G09460.1 CDS  gene_syn F14J9.12, F14J9_12  go_component endomembrane system|GO:0012505||IEA  product glucan endo-1,3-beta-glucosidase-related  note glucan endo-1,3-beta-glucosidase-related; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30933.1); Has 25343 Blast hits to 12380 proteins in 832 species: Archae - 259; Bacteria - 4336; Metazoa - 7865; Fungi - 2354; Plants - 5001; Viruses - 1164; Other Eukaryotes - 4364 (source: NCBI BLink).  protein_id AT1G09460.1p  transcript_id AT1G09460.1  protein_id AT1G09460.1p  transcript_id AT1G09460.1  
At1g09470	chr1:003055391	0.0	C/3055391-3055558,3055636-3055737,3055824-3056285,3056552-3056659,3056761-3056931	AT1G09470.1 CDS  gene_syn F14J9.13, F14J9_13  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.2); Has 44465 Blast hits to 23544 proteins in 1323 species: Archae - 474; Bacteria - 3788; Metazoa - 25253; Fungi - 3384; Plants - 1422; Viruses - 103; Other Eukaryotes - 10041 (source: NCBI BLink).  protein_id AT1G09470.1p  transcript_id AT1G09470.1  protein_id AT1G09470.1p  transcript_id AT1G09470.1  
At1g09480	chr1:003057975	0.0	W/3057975-3058092,3058513-3058653,3059300-3059469,3059807-3059998,3060082-3060431,3060523-3060661	AT1G09480.1 CDS  gene_syn F14J9.14, F14J9_14  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09490.1); Has 7792 Blast hits to 7766 proteins in 1131 species: Archae - 112; Bacteria - 2788; Metazoa - 452; Fungi - 589; Plants - 1448; Viruses - 47; Other Eukaryotes - 2356 (source: NCBI BLink).  protein_id AT1G09480.1p  transcript_id AT1G09480.1  protein_id AT1G09480.1p  transcript_id AT1G09480.1  
At1g09483	chr1:003060992	0.0	C/3060992-3061071,3061307-3061418,3061500-3061601,3061685-3061729	AT1G09483.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09470.1); Has 26 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09483.1p  transcript_id AT1G09483.1  protein_id AT1G09483.1p  transcript_id AT1G09483.1  
At1g09486	chr1:003062430	0.0	C/3062430-3063731	AT1G09486.1 pseudogenic_transcript  pseudo  note pseudogene, 60S ribosomal protein L21 (RPL21B), temporary automated functional assignment; blastp match of 67% identity and 2.0e-52 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S ribosomal protein L21 {Oryza sativa}  
At1g09490	chr1:003064172	0.0	W/3064172-3064289,3064705-3064874,3064956-3065147,3065226-3065575,3065677-3065815	AT1G09490.1 CDS  gene_syn F14J9.15, F14J9_15  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09480.1); Has 7170 Blast hits to 7158 proteins in 1068 species: Archae - 102; Bacteria - 2450; Metazoa - 367; Fungi - 567; Plants - 1390; Viruses - 12; Other Eukaryotes - 2282 (source: NCBI BLink).  protein_id AT1G09490.1p  transcript_id AT1G09490.1  protein_id AT1G09490.1p  transcript_id AT1G09490.1  
At1g09490	chr1:003064680	0.0	W/3064680-3064874,3064956-3065147,3065226-3065575,3065677-3065815	AT1G09490.2 CDS  gene_syn F14J9.15, F14J9_15  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09480.1); Has 4400 Blast hits to 4390 proteins in 724 species: Archae - 37; Bacteria - 1017; Metazoa - 157; Fungi - 517; Plants - 1355; Viruses - 0; Other Eukaryotes - 1317 (source: NCBI BLink).  protein_id AT1G09490.2p  transcript_id AT1G09490.2  protein_id AT1G09490.2p  transcript_id AT1G09490.2  
At1g09500	chr1:003066811	0.0	W/3066811-3066928,3067341-3067513,3067617-3067808,3067891-3068240,3068340-3068484	AT1G09500.1 CDS  gene_syn F14J9.16, F14J9_16  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09510.1); Has 6665 Blast hits to 6653 proteins in 1044 species: Archae - 94; Bacteria - 2120; Metazoa - 315; Fungi - 560; Plants - 1399; Viruses - 45; Other Eukaryotes - 2132 (source: NCBI BLink).  protein_id AT1G09500.1p  transcript_id AT1G09500.1  protein_id AT1G09500.1p  transcript_id AT1G09500.1  
At1g09500	chr1:003066811	0.0	W/3066811-3066928,3067341-3067513,3067617-3067808,3067891-3068244	AT1G09500.3 CDS  gene_syn F14J9.16, F14J9_16  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09510.1); Has 6620 Blast hits to 6608 proteins in 1043 species: Archae - 90; Bacteria - 2098; Metazoa - 315; Fungi - 558; Plants - 1394; Viruses - 45; Other Eukaryotes - 2120 (source: NCBI BLink).  protein_id AT1G09500.3p  transcript_id AT1G09500.3  protein_id AT1G09500.3p  transcript_id AT1G09500.3  
At1g09500	chr1:003067325	0.0	W/3067325-3067513,3067617-3067808,3067891-3068240,3068340-3068484	AT1G09500.2 CDS  gene_syn F14J9.16, F14J9_16  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09510.1); Has 4102 Blast hits to 4092 proteins in 687 species: Archae - 34; Bacteria - 864; Metazoa - 94; Fungi - 506; Plants - 1340; Viruses - 4; Other Eukaryotes - 1260 (source: NCBI BLink).  protein_id AT1G09500.2p  transcript_id AT1G09500.2  protein_id AT1G09500.2p  transcript_id AT1G09500.2  
At1g09510	chr1:003069396	0.0	W/3069396-3069513,3069629-3069798,3069953-3070144,3070230-3070579,3070674-3070812	AT1G09510.1 CDS  gene_syn F14J9.17, F14J9_17  function similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_component cellular_component|GO:0005575||ND  go_process lignin biosynthetic process|GO:0009809||ISS  go_function alcohol dehydrogenase activity|GO:0004022|14745009|ISS  go_function cinnamyl-alcohol dehydrogenase activity|GO:0045551||ISS  product cinnamyl-alcohol dehydrogenase family / CAD family  note cinnamyl-alcohol dehydrogenase family / CAD family; FUNCTIONS IN: alcohol dehydrogenase activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, F mature embryo stage, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamyl-alcohol dehydrogenase family / CAD family (TAIR:AT1G09500.1); Has 7815 Blast hits to 7800 proteins in 1148 species: Archae - 134; Bacteria - 2838; Metazoa - 326; Fungi - 579; Plants - 1423; Viruses - 51; Other Eukaryotes - 2464 (source: NCBI BLink).  protein_id AT1G09510.1p  transcript_id AT1G09510.1  protein_id AT1G09510.1p  transcript_id AT1G09510.1  
At1g09520	chr1:003071248	0.0	C/3071248-3072030	AT1G09520.1 CDS  gene_syn F14J9.18, F14J9_18  go_component chloroplast|GO:0009507||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 23; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G09520.1p  transcript_id AT1G09520.1  protein_id AT1G09520.1p  transcript_id AT1G09520.1  
At1g09530	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.1 CDS  gene_syn F14J9.19, F14J9_19, PAP3, PHOTOCURRENT 1, PHYTOCHROME INTERACTING FACTOR 3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, POC1, PURPLE ACID PHOSPHATASE 3  gene PIF3  function Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.  go_component nucleus|GO:0005634|9845368|IDA  go_process signal transduction|GO:0007165|9845368|TAS  go_process circadian rhythm|GO:0007623|16055924|IMP  go_process response to red or far red light|GO:0009639|10318970|IMP  go_process de-etiolation|GO:0009704|18252845|IMP  go_process gibberellic acid mediated signaling|GO:0009740|18053005|IMP  go_process red or far red light signaling pathway|GO:0010017|10318970|IMP  go_process positive regulation of anthocyanin metabolic process|GO:0031539|17319847|IMP  go_function DNA binding|GO:0003677|17319847|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function protein binding|GO:0005515|12826627|IPI  go_function transcription regulator activity|GO:0030528|12897250|TAS  go_function transcription regulator activity|GO:0030528|9845368|ISS  go_function transcription regulator activity|GO:0030528|9845368|TAS  product PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator  note PHYTOCHROME INTERACTING FACTOR 3 (PIF3); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor (TAIR:AT3G59060.4); Has 2694 Blast hits to 2688 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 114; Plants - 1887; Viruses - 7; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G09530.1p  transcript_id AT1G09530.1  protein_id AT1G09530.1p  transcript_id AT1G09530.1  
At1g09530	chr1:003077216	0.0	W/3077216-3077286,3077378-3078257,3078346-3078453,3078545-3078610,3078843-3078908,3078984-3079367	AT1G09530.2 CDS  gene_syn F14J9.19, F14J9_19, PAP3, PHOTOCURRENT 1, PHYTOCHROME INTERACTING FACTOR 3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, POC1, PURPLE ACID PHOSPHATASE 3  gene PIF3  function Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.  go_component nucleus|GO:0005634|9845368|IDA  go_process signal transduction|GO:0007165|9845368|TAS  go_process circadian rhythm|GO:0007623|16055924|IMP  go_process response to red or far red light|GO:0009639|10318970|IMP  go_process de-etiolation|GO:0009704|18252845|IMP  go_process gibberellic acid mediated signaling|GO:0009740|18053005|IMP  go_process red or far red light signaling pathway|GO:0010017|10318970|IMP  go_process positive regulation of anthocyanin metabolic process|GO:0031539|17319847|IMP  go_function DNA binding|GO:0003677|17319847|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function protein binding|GO:0005515|12826627|IPI  go_function transcription regulator activity|GO:0030528|12897250|TAS  go_function transcription regulator activity|GO:0030528|9845368|ISS  go_function transcription regulator activity|GO:0030528|9845368|TAS  product PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator  note PHYTOCHROME INTERACTING FACTOR 3 (PIF3); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor (TAIR:AT3G59060.4); Has 2694 Blast hits to 2688 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 114; Plants - 1887; Viruses - 7; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G09530.2p  transcript_id AT1G09530.2  protein_id AT1G09530.2p  transcript_id AT1G09530.2  
At1g09540	chr1:003086333	0.0	W/3086333-3086465,3086546-3086675,3086852-3087689	AT1G09540.1 CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, ATMYB61, F14J9.20, F14J9_20, MYB DOMAIN PROTEIN 61, MYB61  gene MYB61  function Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process regulation of stomatal movement|GO:0010119|16005292|IMP  go_process seed coat development|GO:0010214|11752387|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB61 (MYB DOMAIN PROTEIN 61); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 61 (MYB61); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: seed coat development, response to auxin stimulus, regulation of stomatal movement, regulation of transcription, DNA-dependent; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: AtMYB50 (myb domain protein 50); DNA binding / transcription factor (TAIR:AT1G57560.1); Has 6379 Blast hits to 5879 proteins in 352 species: Archae - 0; Bacteria - 0; Metazoa - 662; Fungi - 313; Plants - 3774; Viruses - 4; Other Eukaryotes - 1626 (source: NCBI BLink).  protein_id AT1G09540.1p  transcript_id AT1G09540.1  protein_id AT1G09540.1p  transcript_id AT1G09540.1  
At1g09550	chr1:003089733	0.0	C/3089733-3089792,3089883-3090028,3090354-3090456,3090545-3090622,3090707-3090760,3090847-3090907,3090994-3091118,3091224-3091310,3091401-3091474,3091575-3091704,3091805-3091887,3092089-3092254	AT1G09550.1 CDS  gene_syn F14J9.21, F14J9_21  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function carboxylesterase activity|GO:0004091||ISS  product pectinacetylesterase, putative  note pectinacetylesterase, putative; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: carboxylesterase (TAIR:AT1G57590.1); Has 369 Blast hits to 365 proteins in 73 species: Archae - 0; Bacteria - 26; Metazoa - 110; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G09550.1p  transcript_id AT1G09550.1  protein_id AT1G09550.1p  transcript_id AT1G09550.1  
At1g09560	chr1:003093896	0.0	W/3093896-3094010,3094095-3094639	AT1G09560.1 CDS  gene_syn F14J9.22, F14J9_22, GERMIN-LIKE PROTEIN 5, GLP5  gene GLP5  function germin-like protein (GLP5)  go_component cell wall|GO:0005618|14595688|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process response to cold|GO:0009409|14617066|IEP  product GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / nutrient reservoir (TAIR:AT3G62020.1); Has 1025 Blast hits to 1024 proteins in 154 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 47; Plants - 815; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G09560.1p  transcript_id AT1G09560.1  protein_id AT1G09560.1p  transcript_id AT1G09560.1  
At1g09570	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3098892	AT1G09570.2 CDS  gene_syn ELONGATED HYPOCOTYL 8, F14J9.23, F14J9_23, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A  gene PHYA  function Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.  go_component nucleus|GO:0005634|12119377|IDA  go_component cytoplasm|GO:0005737|12119377|IDA  go_component nuclear body|GO:0016604|16332538|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process gravitropism|GO:0009630|15695459|IMP  go_process phototropism|GO:0009638|14686433|IMP  go_process red light signaling pathway|GO:0010161|17076805|IMP  go_process response to continuous far red light stimulus by the high-irradiance response system|GO:0010201|9351250|IMP  go_process response to very low fluence red light stimulus|GO:0010203|9351250|IMP  go_process response to far red light|GO:0010218|15665470|ISS  go_process response to arsenic|GO:0046685|17335514|IMP  go_function protein histidine kinase activity|GO:0004673||ISS  go_function signal transducer activity|GO:0004871||ISS  go_function G-protein coupled photoreceptor activity|GO:0008020||ISS  go_function red or far-red light photoreceptor activity|GO:0009883|8400877|TAS  product PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer  note PHYTOCHROME A (PHYA); FUNCTIONS IN: red or far-red light photoreceptor activity, protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: nuclear body, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATP-binding region, ATPase-like (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: PHYC (phytochrome defective c); protein histidine kinase (TAIR:AT5G35840.1); Has 18887 Blast hits to 18627 proteins in 2408 species: Archae - 239; Bacteria - 14190; Metazoa - 2; Fungi - 420; Plants - 2982; Viruses - 7; Other Eukaryotes - 1047 (source: NCBI BLink).  protein_id AT1G09570.2p  transcript_id AT1G09570.2  protein_id AT1G09570.2p  transcript_id AT1G09570.2  
At1g09570	chr1:003095498	0.0	C/3095498-3095699,3095782-3096072,3096143-3096959,3097158-3099216	AT1G09570.1 CDS  gene_syn ELONGATED HYPOCOTYL 8, F14J9.23, F14J9_23, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A  gene PHYA  function Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.  go_component nucleus|GO:0005634|12119377|IDA  go_component cytoplasm|GO:0005737|12119377|IDA  go_component nuclear body|GO:0016604|16332538|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process gravitropism|GO:0009630|15695459|IMP  go_process phototropism|GO:0009638|14686433|IMP  go_process red light signaling pathway|GO:0010161|17076805|IMP  go_process response to continuous far red light stimulus by the high-irradiance response system|GO:0010201|9351250|IMP  go_process response to very low fluence red light stimulus|GO:0010203|9351250|IMP  go_process response to far red light|GO:0010218|15665470|ISS  go_process response to arsenic|GO:0046685|17335514|IMP  go_function protein histidine kinase activity|GO:0004673||ISS  go_function signal transducer activity|GO:0004871||ISS  go_function G-protein coupled photoreceptor activity|GO:0008020||ISS  go_function red or far-red light photoreceptor activity|GO:0009883|8400877|TAS  product PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer  note PHYTOCHROME A (PHYA); FUNCTIONS IN: red or far-red light photoreceptor activity, protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: nuclear body, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATP-binding region, ATPase-like (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: PHYC (phytochrome defective c); protein histidine kinase (TAIR:AT5G35840.1); Has 18829 Blast hits to 18523 proteins in 2407 species: Archae - 241; Bacteria - 14112; Metazoa - 2; Fungi - 420; Plants - 3004; Viruses - 7; Other Eukaryotes - 1043 (source: NCBI BLink).  protein_id AT1G09570.1p  transcript_id AT1G09570.1  protein_id AT1G09570.1p  transcript_id AT1G09570.1  
At1g09575	chr1:003101851	0.0	C/3101851-3102348,3102452-3102832	AT1G09575.1 CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF607 (InterPro:IPR006769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57610.2); Has 282 Blast hits to 280 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 41; Plants - 69; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G09575.1p  transcript_id AT1G09575.1  protein_id AT1G09575.1p  transcript_id AT1G09575.1  
At1g09580	chr1:003104657	0.0	W/3104657-3104875,3105485-3105697,3105797-3105873,3105948-3106092	AT1G09580.1 CDS  gene_syn F14J9.28, F14J9_28  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G57620.1); Has 1298 Blast hits to 1296 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 666; Fungi - 335; Plants - 132; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).  protein_id AT1G09580.1p  transcript_id AT1G09580.1  protein_id AT1G09580.1p  transcript_id AT1G09580.1  
At1g09590	chr1:003106549	0.0	W/3106549-3106785,3107349-3107606	AT1G09590.1 CDS  gene_syn F14J9.25  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L21 (RPL21A)  note 60S ribosomal protein L21 (RPL21A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, chloroplast; EXPRESSED IN: guard cell, juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L21 (RPL21C) (TAIR:AT1G09690.1); Has 1146 Blast hits to 1146 proteins in 281 species: Archae - 143; Bacteria - 0; Metazoa - 615; Fungi - 122; Plants - 82; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT1G09590.1p  transcript_id AT1G09590.1  protein_id AT1G09590.1p  transcript_id AT1G09590.1  
At1g09600	chr1:003108617	0.0	W/3108617-3109120,3109210-3109494,3109571-3110116,3110231-3110331,3110428-3110533,3110625-3111035,3111127-3111318	AT1G09600.1 CDS  gene_syn F14J9.26, F14J9_26  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G57700.1); Has 90288 Blast hits to 89115 proteins in 3039 species: Archae - 48; Bacteria - 7693; Metazoa - 39299; Fungi - 8328; Plants - 17660; Viruses - 428; Other Eukaryotes - 16832 (source: NCBI BLink).  protein_id AT1G09600.1p  transcript_id AT1G09600.1  protein_id AT1G09600.1p  transcript_id AT1G09600.1  
At1g09610	chr1:003111789	0.0	W/3111789-3112637	AT1G09610.1 CDS  gene_syn F14J9.29, F14J9_29  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09990.1); Has 160 Blast hits to 160 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G09610.1p  transcript_id AT1G09610.1  protein_id AT1G09610.1p  transcript_id AT1G09610.1  
At1g09620	chr1:003113077	0.0	C/3113077-3113101,3113205-3116455	AT1G09620.1 CDS  gene_syn F21M12.1, F21M12_1  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process leucyl-tRNA aminoacylation|GO:0006429||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function leucine-tRNA ligase activity|GO:0004823||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding  note ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: leucyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic (InterPro:IPR004493), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (TAIR:AT4G04350.1); Has 10914 Blast hits to 10382 proteins in 1644 species: Archae - 486; Bacteria - 5815; Metazoa - 490; Fungi - 313; Plants - 129; Viruses - 0; Other Eukaryotes - 3681 (source: NCBI BLink).  protein_id AT1G09620.1p  transcript_id AT1G09620.1  protein_id AT1G09620.1p  transcript_id AT1G09620.1  
At1g09625	chr1:003117343	0.0	C/3117343-3117567	AT1G09625.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09625.1p  transcript_id AT1G09625.1  protein_id AT1G09625.1p  transcript_id AT1G09625.1  
At1g09630	chr1:003118350	0.0	C/3118350-3118838,3119407-3119571	AT1G09630.1 CDS  gene_syn ARABIDOPSIS RAB GTPASE 11C, ARABIDOPSIS RAB GTPASE A2A, ATRAB-A2A, ATRAB11C, ATRABA2A, F21M12.2, F21M12_2, RAB GTPASE A2A, RAB-A2A, RAS-RELATED SMALL GTPASE  gene ATRAB11C  function Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function GTP binding|GO:0005525||IEA  go_component endosome|GO:0005768|18239134|IDA  go_component cell plate|GO:0009504|18239134|IDA  go_process cytokinesis|GO:0000910|18239134|IMP  go_function GTP binding|GO:0005525||ISS  product ATRAB11C (ARABIDOPSIS RAB GTPASE 11C); GTP binding  note ARABIDOPSIS RAB GTPASE 11C (ATRAB11C); FUNCTIONS IN: GTP binding; INVOLVED IN: cytokinesis; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding (TAIR:AT1G07410.1); Has 22111 Blast hits to 22069 proteins in 618 species: Archae - 17; Bacteria - 104; Metazoa - 12465; Fungi - 2563; Plants - 1891; Viruses - 19; Other Eukaryotes - 5052 (source: NCBI BLink).  protein_id AT1G09630.1p  transcript_id AT1G09630.1  protein_id AT1G09630.1p  transcript_id AT1G09630.1  
At1g09640	chr1:003120162	0.0	W/3120162-3120170,3120388-3120537,3120626-3120686,3120787-3120839,3120959-3121060,3121171-3121660,3121773-3122152	AT1G09640.1 CDS  gene_syn F21M12.3, F21M12_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translational elongation|GO:0006414||IEA  go_function translation elongation factor activity|GO:0003746||IEA  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1B-gamma, putative / eEF-1B gamma, putative  note elongation factor 1B-gamma, putative / eEF-1B gamma, putative; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: elongation factor 1B-gamma, putative / eEF-1B gamma, putative (TAIR:AT1G57720.2); Has 6774 Blast hits to 6759 proteins in 920 species: Archae - 2; Bacteria - 2995; Metazoa - 1594; Fungi - 400; Plants - 499; Viruses - 0; Other Eukaryotes - 1284 (source: NCBI BLink).  protein_id AT1G09640.1p  transcript_id AT1G09640.1  protein_id AT1G09640.1p  transcript_id AT1G09640.1  
At1g09645	chr1:003123155	0.0	W/3123155-3123236,3124109-3124347	AT1G09645.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G57765.1); Has 31 Blast hits to 31 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09645.1p  transcript_id AT1G09645.1  protein_id AT1G09645.1p  transcript_id AT1G09645.1  
At1g09650	chr1:003125978	0.0	W/3125978-3127126	AT1G09650.1 CDS  gene_syn F21M12.4, F21M12_4  go_component cellular_component|GO:0005575||ND  go_process response to chitin|GO:0010200|17722694|IEP  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G12490.1); Has 611 Blast hits to 598 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 599; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G09650.1p  transcript_id AT1G09650.1  protein_id AT1G09650.1p  transcript_id AT1G09650.1  
At1g09660	chr1:003128032	0.0	C/3128032-3128187,3128259-3128402,3128851-3128967,3129044-3129181,3129304-3129428,3130100-3130185,3130661-3130791	AT1G09660.1 CDS  gene_syn F21M12.5, F21M12_5  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing quaking protein, putative  note KH domain-containing quaking protein, putative; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G26480.1); Has 1026 Blast hits to 1025 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 712; Fungi - 103; Plants - 149; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G09660.1p  transcript_id AT1G09660.1  protein_id AT1G09660.1p  transcript_id AT1G09660.1  
At1g09660	chr1:003128205	0.0	C/3128205-3128402,3128851-3128967,3129044-3129181,3129304-3129428,3130100-3130185,3130661-3130791	AT1G09660.2 CDS  gene_syn F21M12.5, F21M12_5  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing quaking protein, putative  note KH domain-containing quaking protein, putative; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G26480.1); Has 1025 Blast hits to 1024 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 707; Fungi - 110; Plants - 146; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G09660.2p  transcript_id AT1G09660.2  protein_id AT1G09660.2p  transcript_id AT1G09660.2  
At1g09665	chr1:003133095	0.0	W/3133095-3133555,3133638-3133674	AT1G09665.1 CDS  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870||ISS  product Toll-Interleukin-Resistance (TIR) domain-containing protein  note Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G60320.1); Has 839 Blast hits to 799 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 839; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09665.1p  transcript_id AT1G09665.1  protein_id AT1G09665.1p  transcript_id AT1G09665.1  
At1g09680	chr1:003134107	0.0	C/3134107-3135930	AT1G09680.1 CDS  gene_syn F21M12.7, F21M12_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 23956 Blast hits to 6023 proteins in 185 species: Archae - 3; Bacteria - 22; Metazoa - 746; Fungi - 593; Plants - 21530; Viruses - 0; Other Eukaryotes - 1062 (source: NCBI BLink).  protein_id AT1G09680.1p  transcript_id AT1G09680.1  protein_id AT1G09680.1p  transcript_id AT1G09680.1  
At1g09690	chr1:003136407	0.0	C/3136407-3136664,3137194-3137430	AT1G09690.1 CDS  gene_syn F21M12.8, F21M12_8  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L21 (RPL21C)  note 60S ribosomal protein L21 (RPL21C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: juvenile leaf, pollen tube; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L21 (RPL21A) (TAIR:AT1G09590.1); Has 1146 Blast hits to 1146 proteins in 281 species: Archae - 143; Bacteria - 0; Metazoa - 615; Fungi - 122; Plants - 82; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).  protein_id AT1G09690.1p  transcript_id AT1G09690.1  protein_id AT1G09690.1p  transcript_id AT1G09690.1  
At1g09700	chr1:003137960	0.0	C/3137960-3138931,3139335-3139597,3140094-3140118	AT1G09700.1 CDS  gene_syn DRB1, DSRNA-BINDING PROTEIN 1, F21M12.9, F21M12_9, HYL1, HYPONASTIC LEAVES 1  gene HYL1  function Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.  go_component nucleus|GO:0005634|11148283|IDA  go_component nucleus|GO:0005634|17369351|IDA  go_component nuclear dicing body|GO:0010445|17442570|IDA  go_component Cajal body|GO:0015030|17369351|IDA  go_process response to auxin stimulus|GO:0009733|11148283|IMP  go_process response to cytokinin stimulus|GO:0009735|11148283|IMP  go_process response to abscisic acid stimulus|GO:0009737|11148283|IMP  go_process RNA interference, production of ta-siRNAs|GO:0010267|16889646|IMP  go_process gene silencing by miRNA, production of miRNAs|GO:0035196|14972688|IMP  go_process gene silencing by miRNA, mRNA cleavage|GO:0035279|15851028|IMP  go_function double-stranded RNA binding|GO:0003725|11148283|IDA  go_function double-stranded RNA binding|GO:0003725|15821876|IDA  go_function protein binding|GO:0005515|15821876|IPI  go_function miRNA binding|GO:0035198|17369351|IDA  product HYL1 (HYPONASTIC LEAVES 1); double-stranded RNA binding / miRNA binding / protein binding  note HYPONASTIC LEAVES 1 (HYL1); FUNCTIONS IN: double-stranded RNA binding, protein binding, miRNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear dicing body, nucleus, Cajal body; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: DRB3 (dsRNA-binding protein 3); RNA binding / double-stranded RNA binding (TAIR:AT3G26932.2); Has 537 Blast hits to 480 proteins in 155 species: Archae - 14; Bacteria - 232; Metazoa - 95; Fungi - 6; Plants - 118; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G09700.1p  transcript_id AT1G09700.1  protein_id AT1G09700.1p  transcript_id AT1G09700.1  
At1g09710	chr1:003141119	0.0	W/3141119-3141198,3141294-3141483,3141745-3141831,3142030-3142398,3142930-3143074,3143271-3144232	AT1G09710.1 CDS  gene_syn F21M12.10, F21M12_10  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G58220.1); Has 2027 Blast hits to 463 proteins in 129 species: Archae - 0; Bacteria - 71; Metazoa - 332; Fungi - 133; Plants - 41; Viruses - 0; Other Eukaryotes - 1450 (source: NCBI BLink).  protein_id AT1G09710.1p  transcript_id AT1G09710.1  protein_id AT1G09710.1p  transcript_id AT1G09710.1  
At1g09720	chr1:003144438	0.0	C/3144438-3147130,3147210-3147303	AT1G09720.1 CDS  gene_syn F21M12.11, F21M12_11  go_process biological_process|GO:0008150||ND  product kinase interacting family protein  note kinase interacting family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: pollen tube, leaf; EXPRESSED DURING: 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: EMB1674 (EMBRYO DEFECTIVE 1674) (TAIR:AT1G58210.1); Has 29295 Blast hits to 18993 proteins in 958 species: Archae - 371; Bacteria - 2267; Metazoa - 15624; Fungi - 2220; Plants - 1023; Viruses - 107; Other Eukaryotes - 7683 (source: NCBI BLink).  protein_id AT1G09720.1p  transcript_id AT1G09720.1  protein_id AT1G09720.1p  transcript_id AT1G09720.1  
At1g09730	chr1:003148017	0.0	C/3148017-3148568,3148658-3149080,3149385-3149504,3150119-3150209,3150464-3150557,3150637-3150692,3150772-3150972,3151160-3151291,3151452-3151508,3151913-3152021,3152458-3152578,3152674-3152871,3153010-3153237,3153321-3153754,3154098-3154236	AT1G09730.1 CDS  gene_syn F21M12.29, F21M12_29  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product Ulp1 protease family protein  note Ulp1 protease family protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT4G33620.1); Has 1334 Blast hits to 1209 proteins in 162 species: Archae - 2; Bacteria - 12; Metazoa - 733; Fungi - 219; Plants - 125; Viruses - 7; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G09730.1p  transcript_id AT1G09730.1  protein_id AT1G09730.1p  transcript_id AT1G09730.1  
At1g09740	chr1:003154603	0.0	W/3154603-3154804,3154896-3154999,3155217-3155335,3155744-3155834	AT1G09740.1 CDS  gene_syn F21M12.12, F21M12_12  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product ethylene-responsive protein, putative  note ethylene-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT3G11930.1); Has 2952 Blast hits to 2858 proteins in 613 species: Archae - 247; Bacteria - 2061; Metazoa - 48; Fungi - 51; Plants - 388; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G09740.1p  transcript_id AT1G09740.1  protein_id AT1G09740.1p  transcript_id AT1G09740.1  
At1g09750	chr1:003157541	0.0	W/3157541-3158593,3158664-3158960	AT1G09750.1 CDS  gene_syn F21M12.13, F21M12_13  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  product chloroplast nucleoid DNA-binding protein-related  note chloroplast nucleoid DNA-binding protein-related; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G54400.1); Has 1789 Blast hits to 1780 proteins in 198 species: Archae - 0; Bacteria - 2; Metazoa - 357; Fungi - 250; Plants - 1089; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G09750.1p  transcript_id AT1G09750.1  protein_id AT1G09750.1p  transcript_id AT1G09750.1  
At1g09760	chr1:003159476	0.0	C/3159476-3159481,3159578-3159652,3159752-3159802,3159923-3160081,3160582-3160787,3160888-3161017,3161381-3161421,3161522-3161603	AT1G09760.1 CDS  gene_syn F21M12.14, F21M12_14, U2 small nuclear ribonucleoprotein A, U2A   gene U2A   go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nucleoplasm|GO:0005654|15133128|IDA  go_component cytoplasm|GO:0005737|15133128|IDA  go_component Cajal body|GO:0015030|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|15133128|IDA  go_process response to cold|GO:0009409|14617066|IEP  go_function protein binding|GO:0005515||ISS  product U2A  (U2 small nuclear ribonucleoprotein A); protein binding  note U2 small nuclear ribonucleoprotein A (U2A ); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 5479 Blast hits to 4495 proteins in 302 species: Archae - 0; Bacteria - 1581; Metazoa - 2979; Fungi - 220; Plants - 106; Viruses - 2; Other Eukaryotes - 591 (source: NCBI BLink).  protein_id AT1G09760.1p  transcript_id AT1G09760.1  protein_id AT1G09760.1p  transcript_id AT1G09760.1  
At1g09770	chr1:003162002	0.0	W/3162002-3162178,3162444-3164162,3164395-3164676,3164766-3165122	AT1G09770.1 CDS  gene_syn ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ATCDC5, ATMYBCDC5, CDC5, CELL DIVISION CYCLE 5, F21M12.15, F21M12_15  gene ATCDC5  function Member of MYB3R- and R2R3- type MYB- encoding genes. Essential for plant innate immunity. Interacts with MOS4 and PRL1.  go_component chloroplast|GO:0009507|15028209|IDA  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|17575050|IMP  go_process defense response signaling pathway, resistance gene-independent|GO:0010204|17575050|IMP  go_process defense response to bacterium|GO:0042742|17575050|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process defense response to fungus|GO:0050832|17575050|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor  note ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5 (ATCDC5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: defense response signaling pathway, resistance gene-independent, defense response signaling pathway, resistance gene-dependent, defense response to fungus, defense response to bacterium, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB3R-5 (MYB DOMAIN PROTEIN 3R-5); DNA binding / transcription factor (TAIR:AT5G02320.1); Has 10151 Blast hits to 8135 proteins in 531 species: Archae - 9; Bacteria - 249; Metazoa - 3171; Fungi - 645; Plants - 3006; Viruses - 8; Other Eukaryotes - 3063 (source: NCBI BLink).  protein_id AT1G09770.1p  transcript_id AT1G09770.1  protein_id AT1G09770.1p  transcript_id AT1G09770.1  
At1g09780	chr1:003165550	0.0	C/3165550-3165711,3165798-3165953,3166039-3166134,3166224-3166416,3166583-3167211,3167303-3167581,3167654-3167812	AT1G09780.1 CDS  gene_syn F21M12.16, F21M12_16  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycerate mutase activity|GO:0004619||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function metal ion binding|GO:0046872||IEA  go_component mitochondrial envelope|GO:0005740|12953116|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to cold|GO:0009409|16574749|IEP  go_function 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity|GO:0046537||ISS  product 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative  note 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative; FUNCTIONS IN: manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: cytosol, mitochondrial envelope, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Metalloenzyme (InterPro:IPR006124), BPG-independent PGAM, N-terminal (InterPro:IPR011258), Alkaline-phosphatase-like, core domain (InterPro:IPR017850), Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (InterPro:IPR005995); BEST Arabidopsis thaliana protein match is: 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative (TAIR:AT3G08590.2); Has 3363 Blast hits to 3360 proteins in 901 species: Archae - 36; Bacteria - 1671; Metazoa - 32; Fungi - 52; Plants - 344; Viruses - 0; Other Eukaryotes - 1228 (source: NCBI BLink).  protein_id AT1G09780.1p  transcript_id AT1G09780.1  protein_id AT1G09780.1p  transcript_id AT1G09780.1  
At1g09790	chr1:003168568	0.0	C/3168568-3168869,3168954-3169234,3169327-3169471,3169589-3170045,3170575-3170687,3170753-3170819	AT1G09790.1 CDS  gene_syn COBL6, COBRA-LIKE PROTEIN 6 PRECURSOR, F21M12.17, F21M12_17  gene COBL6  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12376623|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR)  note COBRA-LIKE PROTEIN 6 PRECURSOR (COBL6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) (TAIR:AT3G02210.1); Has 240 Blast hits to 240 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09790.1p  transcript_id AT1G09790.1  protein_id AT1G09790.1p  transcript_id AT1G09790.1  
At1g09795	chr1:003173588	0.0	W/3173588-3173884,3174454-3174513,3174620-3174733,3174997-3175062,3175141-3175248,3175351-3175434,3175753-3175854,3175942-3176055,3176130-3176210,3176305-3176424,3176595-3176690	AT1G09795.1 CDS  gene_syn ATATP-PRT2, ATP PHOSPHORIBOSYL TRANSFERASE 2, HISN1B  gene ATATP-PRT2  function ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_process histidine biosynthetic process|GO:0000105|10712555|IDA  go_process histidine biosynthetic process|GO:0000105||ISS  go_function ATP phosphoribosyltransferase activity|GO:0003879|10712555|IDA  go_function ATP phosphoribosyltransferase activity|GO:0003879||ISS  product ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2); ATP phosphoribosyltransferase  note ATP PHOSPHORIBOSYL TRANSFERASE 2 (ATATP-PRT2); FUNCTIONS IN: ATP phosphoribosyltransferase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histidine biosynthesis HisG: ATP phosphoribosyltransferase (InterPro:IPR001348), ATP phosphoribosyltransferase, conserved site (InterPro:IPR018198), ATP phosphoribosyltransferase, catalytic region (InterPro:IPR013820), Histidine biosynthesis HisG, C-terminal (InterPro:IPR013115), Nitrogen regulatory PII-like, alpha/beta (InterPro:IPR011322); BEST Arabidopsis thaliana protein match is: ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE 1); ATP phosphoribosyltransferase (TAIR:AT1G58080.1); Has 4375 Blast hits to 4375 proteins in 1234 species: Archae - 134; Bacteria - 2260; Metazoa - 0; Fungi - 96; Plants - 37; Viruses - 0; Other Eukaryotes - 1848 (source: NCBI BLink).  protein_id AT1G09795.1p  transcript_id AT1G09795.1  protein_id AT1G09795.1p  transcript_id AT1G09795.1  
At1g09800	chr1:003177121	0.0	C/3177121-3177218,3177321-3177381,3177598-3177867,3178390-3178452,3178589-3178688,3178830-3178912,3179152-3179205,3179473-3179550,3179845-3179901,3180082-3180336	AT1G09800.1 CDS  gene_syn F21M12.18, F21M12_18  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_component cellular_component|GO:0005575||ND  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  product tRNA pseudouridine synthase family protein  note tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: tRNA pseudouridine synthase family protein (TAIR:AT3G06950.1); Has 6844 Blast hits to 5672 proteins in 1445 species: Archae - 71; Bacteria - 3683; Metazoa - 118; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2917 (source: NCBI BLink).  protein_id AT1G09800.1p  transcript_id AT1G09800.1  protein_id AT1G09800.1p  transcript_id AT1G09800.1  
At1g09810	chr1:003181138	0.0	C/3181138-3181299,3181402-3181788,3181880-3182353,3182478-3182663,3182753-3182817,3182999-3183047,3183129-3183190,3183327-3183354	AT1G09810.1 CDS  gene_syn ECT11, F21M12.20, F21M12_20, evolutionarily conserved C-terminal region 11  gene ECT11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT11 (evolutionarily conserved C-terminal region 11)  note evolutionarily conserved C-terminal region 11 (ECT11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT8 (evolutionarily conserved C-terminal region 8) (TAIR:AT1G79270.1); Has 670 Blast hits to 669 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 341; Fungi - 69; Plants - 190; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G09810.1p  transcript_id AT1G09810.1  protein_id AT1G09810.1p  transcript_id AT1G09810.1  
At1g09812	chr1:003187817	0.0	W/3187817-3188077,3188455-3188580	AT1G09812.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58007.2); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09812.1p  transcript_id AT1G09812.1  protein_id AT1G09812.1p  transcript_id AT1G09812.1  
At1g09815	chr1:003189460	0.0	W/3189460-3189640,3189857-3190050	AT1G09815.1 CDS  gene_syn POLD4, POLYMERASE DELTA 4  gene POLD4  go_component nucleus|GO:0005634||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA replication|GO:0006260||ISS  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product POLD4 (POLYMERASE DELTA 4); DNA-directed DNA polymerase  note POLYMERASE DELTA 4 (POLD4); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase delta, subunit 4 (InterPro:IPR007218); Has 137 Blast hits to 137 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 58; Plants - 33; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G09815.1p  transcript_id AT1G09815.1  protein_id AT1G09815.1p  transcript_id AT1G09815.1  
At1g09820	chr1:003190594	0.0	C/3190594-3192414	AT1G09820.1 CDS  gene_syn F21M12.21, F21M12_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 24148 Blast hits to 6074 proteins in 187 species: Archae - 1; Bacteria - 24; Metazoa - 844; Fungi - 592; Plants - 21578; Viruses - 0; Other Eukaryotes - 1109 (source: NCBI BLink).  protein_id AT1G09820.1p  transcript_id AT1G09820.1  protein_id AT1G09820.1p  transcript_id AT1G09820.1  
At1g09830	chr1:003192783	0.0	C/3192783-3193202,3193291-3193821,3194177-3194550,3194663-3194936	AT1G09830.1 CDS  gene_syn F21M12.22, F21M12_22  function glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process purine nucleotide biosynthetic process|GO:0006164|7920700|IGI  go_process purine base biosynthetic process|GO:0009113||ISS  go_function phosphoribosylamine-glycine ligase activity|GO:0004637|7920700|IGI  go_function phosphoribosylamine-glycine ligase activity|GO:0004637||ISS  product phosphoribosylamine--glycine ligase (PUR2)  note phosphoribosylamine--glycine ligase (PUR2); FUNCTIONS IN: phosphoribosylamine-glycine ligase activity; INVOLVED IN: purine nucleotide biosynthetic process, purine base biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Rudiment single hybrid motif (InterPro:IPR011054), Phosphoribosylglycinamide synthetase (InterPro:IPR000115), Pre-ATP-grasp fold (InterPro:IPR013817); Has 8786 Blast hits to 8784 proteins in 1464 species: Archae - 212; Bacteria - 3808; Metazoa - 195; Fungi - 148; Plants - 41; Viruses - 0; Other Eukaryotes - 4382 (source: NCBI BLink).  protein_id AT1G09830.1p  transcript_id AT1G09830.1  protein_id AT1G09830.1p  transcript_id AT1G09830.1  
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.1 CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.1p  transcript_id AT1G09840.1  protein_id AT1G09840.1p  transcript_id AT1G09840.1  
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.2 CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.2p  transcript_id AT1G09840.2  protein_id AT1G09840.2p  transcript_id AT1G09840.2  
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.3 CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.3p  transcript_id AT1G09840.3  protein_id AT1G09840.3p  transcript_id AT1G09840.3  
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.4 CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.4p  transcript_id AT1G09840.4  protein_id AT1G09840.4p  transcript_id AT1G09840.4  
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.5 CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.5p  transcript_id AT1G09840.5  protein_id AT1G09840.5p  transcript_id AT1G09840.5  
At1g09840	chr1:003196114	0.0	C/3196114-3196202,3196515-3196617,3196700-3196783,3197231-3197326,3197596-3197646,3197743-3197883,3197952-3198008,3198443-3198517,3198656-3198928,3199014-3199073,3199161-3199253,3199381-3199524	AT1G09840.6 CDS  gene_syn ATSK41, F21M12.23, F21M12_23, SHAGGY-LIKE PROTEIN KINASE 41  gene ATSK41  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41); ATP binding / protein kinase/ protein serine/threonine kinase  note SHAGGY-LIKE PROTEIN KINASE 41 (ATSK41); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42); ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G57870.2); Has 75349 Blast hits to 74533 proteins in 2475 species: Archae - 36; Bacteria - 5917; Metazoa - 32063; Fungi - 7729; Plants - 14097; Viruses - 329; Other Eukaryotes - 15178 (source: NCBI BLink).  protein_id AT1G09840.6p  transcript_id AT1G09840.6  protein_id AT1G09840.6p  transcript_id AT1G09840.6  
At1g09850	chr1:003201848	0.0	W/3201848-3202265,3202709-3202944,3203045-3203185,3203271-3203702,3203789-3203875	AT1G09850.1 CDS  gene_syn F21M12.24, F21M12_24, XBCP3, xylem bark cysteine peptidase 3  gene XBCP3  function Arabidopsis thaliana papain-like cysteine peptidase  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_function cysteine-type peptidase activity|GO:0008234||ISS  product XBCP3 (xylem bark cysteine peptidase 3); cysteine-type endopeptidase/ cysteine-type peptidase  note xylem bark cysteine peptidase 3 (XBCP3); FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative / thiol protease, putative (TAIR:AT5G43060.1); Has 6952 Blast hits to 6272 proteins in 598 species: Archae - 29; Bacteria - 122; Metazoa - 3609; Fungi - 4; Plants - 1229; Viruses - 118; Other Eukaryotes - 1841 (source: NCBI BLink).  protein_id AT1G09850.1p  transcript_id AT1G09850.1  protein_id AT1G09850.1p  transcript_id AT1G09850.1  
At1g09860	chr1:003204136	0.0	C/3204136-3205287	AT1G09860.1 CDS  gene_syn ARABIDOPSIS THALIANA PURINE PERMEASE 16, ATPUP16, F21M12.25, F21M12_25  gene ATPUP16  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP16; purine transmembrane transporter  note ATPUP16; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease-related (TAIR:AT1G57980.1); Has 196 Blast hits to 190 proteins in 7 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09860.1p  transcript_id AT1G09860.1  protein_id AT1G09860.1p  transcript_id AT1G09860.1  
At1g09870	chr1:003205817	0.0	W/3205817-3205917,3206111-3206198,3206278-3206571,3206686-3206844,3206964-3207104,3207220-3207276,3207377-3207515,3207609-3207713,3207820-3208010,3208168-3208209,3208298-3208444	AT1G09870.1 CDS  gene_syn F21M12.26, F21M12_26  go_component plasma membrane|GO:0005886|17151019|IDA  go_function acid phosphatase activity|GO:0003993||IEA  go_process biological_process|GO:0008150||ND  go_function acid phosphatase activity|GO:0003993||ISS  product histidine acid phosphatase family protein  note histidine acid phosphatase family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histidine acid phosphatase (InterPro:IPR000560), Histidine acid phosphatase, eukaryotic (InterPro:IPR016274); Has 574 Blast hits to 569 proteins in 162 species: Archae - 0; Bacteria - 75; Metazoa - 167; Fungi - 277; Plants - 29; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G09870.1p  transcript_id AT1G09870.1  protein_id AT1G09870.1p  transcript_id AT1G09870.1  
At1g09880	chr1:003208828	0.0	C/3208828-3209085,3209168-3209300,3209377-3209650,3209731-3209872,3209964-3210054,3210143-3210249,3210331-3210486,3210569-3210739,3210848-3211109,3211184-3211300,3211385-3211450,3211535-3211653	AT1G09880.1 CDS  gene_syn F21M12.27, F21M12_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT1G09890.1); Has 138 Blast hits to 131 proteins in 37 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 50; Plants - 73; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G09880.1p  transcript_id AT1G09880.1  protein_id AT1G09880.1p  transcript_id AT1G09880.1  
At1g09890	chr1:003214237	0.0	C/3214237-3214467,3214582-3214708,3214796-3214912,3215098-3215254,3215327-3215468,3215557-3215647,3215769-3215875,3215958-3216116,3216188-3216361,3216459-3216600,3216682-3216801,3216871-3216990,3217134-3217184,3217271-3217386	AT1G09890.1 CDS  gene_syn F21M12.28, F21M12_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT1G09910.1); Has 130 Blast hits to 122 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 46; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09890.1p  transcript_id AT1G09890.1  protein_id AT1G09890.1p  transcript_id AT1G09890.1  
At1g09900	chr1:003218133	0.0	W/3218133-3219929	AT1G09900.1 CDS  gene_syn F21M12.38, F21M12_38  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G04760.1); Has 28344 Blast hits to 6234 proteins in 190 species: Archae - 4; Bacteria - 32; Metazoa - 1003; Fungi - 738; Plants - 24926; Viruses - 0; Other Eukaryotes - 1641 (source: NCBI BLink).  protein_id AT1G09900.1p  transcript_id AT1G09900.1  protein_id AT1G09900.1p  transcript_id AT1G09900.1  
At1g09910	chr1:003220151	0.0	C/3220151-3220387,3220466-3220706,3220790-3220946,3221017-3221158,3221328-3221418,3221533-3221639,3221731-3221886,3221966-3222136,3222345-3222486,3222714-3222833,3222912-3223031,3223353-3223403,3223528-3223649,3223734-3223831,3224379-3224451	AT1G09910.1 CDS  gene_syn F21M12.30, F21M12_30  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component cellular_component|GO:0005575||ND  go_function lyase activity|GO:0016829||ISS  product lyase  note lyase; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: lyase (TAIR:AT1G09890.1); Has 149 Blast hits to 139 proteins in 38 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 52; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09910.1p  transcript_id AT1G09910.1  protein_id AT1G09910.1p  transcript_id AT1G09910.1  
At1g09920	chr1:003224863	0.0	C/3224863-3225013,3225116-3225225,3225304-3225441,3225994-3226129,3226817-3226860	AT1G09920.1 CDS  gene_syn F21M12.31, F21M12_31  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product TRAF-type zinc finger-related  note TRAF-type zinc finger-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TRAF-type (InterPro:IPR001293); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor K (TAIR:AT4G15420.1); Has 773 Blast hits to 745 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 538; Fungi - 70; Plants - 39; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).  protein_id AT1G09920.1p  transcript_id AT1G09920.1  protein_id AT1G09920.1p  transcript_id AT1G09920.1  
At1g09930	chr1:003227490	0.0	C/3227490-3228290,3228373-3228625,3228704-3229267,3229365-3229462,3229555-3230043	AT1G09930.1 CDS  gene_syn ATOPT2, F21M12.32, F21M12_32, OLIGOPEPTIDE TRANSPORTER 2  gene ATOPT2  function oligopeptide transporter  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|11788749|ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function oligopeptide transporter activity|GO:0015198|11788749|ISS  go_function oligopeptide transporter activity|GO:0015198||ISS  product ATOPT2; oligopeptide transporter  note ATOPT2; FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: sperm cell, flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: OPT4 (OLIGOPEPTIDE TRANSPORTER 4); oligopeptide transporter (TAIR:AT5G64410.1); Has 819 Blast hits to 806 proteins in 91 species: Archae - 0; Bacteria - 41; Metazoa - 0; Fungi - 560; Plants - 207; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G09930.1p  transcript_id AT1G09930.1  protein_id AT1G09930.1p  transcript_id AT1G09930.1  
At1g09932	chr1:003230716	0.0	C/3230716-3230800,3230881-3230922,3231065-3231184,3231544-3231632,3231737-3231811,3232017-3232137,3232477-3232556,3232670-3232777,3232883-3232924	AT1G09932.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product phosphoglycerate/bisphosphoglycerate mutase-related  note phosphoglycerate/bisphosphoglycerate mutase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT2G17280.2); Has 274 Blast hits to 274 proteins in 62 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 138; Plants - 61; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G09932.2p  transcript_id AT1G09932.2  protein_id AT1G09932.2p  transcript_id AT1G09932.2  
At1g09932	chr1:003230716	0.0	C/3230716-3230800,3230881-3230922,3231065-3231184,3231544-3231632,3231737-3231811,3232017-3232137,3232477-3232556,3232670-3232777,3232965-3233027	AT1G09932.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product phosphoglycerate/bisphosphoglycerate mutase-related  note phosphoglycerate/bisphosphoglycerate mutase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase family protein (TAIR:AT2G17280.2); Has 318 Blast hits to 318 proteins in 67 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 176; Plants - 65; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G09932.1p  transcript_id AT1G09932.1  protein_id AT1G09932.1p  transcript_id AT1G09932.1  
At1g09935	chr1:003234060	0.0	C/3234060-3234084,3234165-3234209,3234286-3234405,3234494-3234582,3234693-3234767,3234872-3234974,3235079-3235158,3235271-3235378,3235480-3235530	AT1G09935.1 CDS  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58280.3); Has 377 Blast hits to 377 proteins in 102 species: Archae - 0; Bacteria - 77; Metazoa - 0; Fungi - 127; Plants - 68; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G09935.1p  transcript_id AT1G09935.1  protein_id AT1G09935.1p  transcript_id AT1G09935.1  
At1g09940	chr1:003237224	0.0	C/3237224-3238336,3238496-3238737,3239025-3239262	AT1G09940.1 CDS  gene_syn F21M12.33, F21M12_33, HEMA2  gene HEMA2  function Encodes glutamyl-tRNA reductase. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins  go_component cytoplasm|GO:0005737||IEA  go_process porphyrin biosynthetic process|GO:0006779|8605295|TAS  go_process heme biosynthetic process|GO:0006783|17416636|IMP  go_process response to oxidative stress|GO:0006979|17416636|IEP  go_process tetrapyrrole biosynthetic process|GO:0033014|17416636|IMP  go_function glutamyl-tRNA reductase activity|GO:0008883|8605295|IGI  product HEMA2; glutamyl-tRNA reductase  note HEMA2; FUNCTIONS IN: glutamyl-tRNA reductase activity; INVOLVED IN: response to oxidative stress, heme biosynthetic process, tetrapyrrole biosynthetic process, porphyrin biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, conserved site (InterPro:IPR018214), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal (InterPro:IPR015896), NAD(P)-binding (InterPro:IPR016040), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase (InterPro:IPR000343), Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal (InterPro:IPR015895); BEST Arabidopsis thaliana protein match is: HEMA1; glutamyl-tRNA reductase (TAIR:AT1G58290.1); Has 3352 Blast hits to 3337 proteins in 1025 species: Archae - 154; Bacteria - 2081; Metazoa - 0; Fungi - 0; Plants - 188; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).  protein_id AT1G09940.1p  transcript_id AT1G09940.1  protein_id AT1G09940.1p  transcript_id AT1G09940.1  
At1g09950	chr1:003240849	0.0	C/3240849-3241541	AT1G09950.1 CDS  gene_syn F21M12.34, F21M12_34  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, flower, root, leaf; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: ZW2 (TAIR:AT1G58330.1); Has 330 Blast hits to 329 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 330; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09950.1p  transcript_id AT1G09950.1  protein_id AT1G09950.1p  transcript_id AT1G09950.1  
At1g09960	chr1:003244258	0.0	W/3244258-3244795,3245159-3245886,3246023-3246086,3246215-3246258,3246560-3246718	AT1G09960.1 CDS  gene_syn ATSUT4, F21M12.35, F21M12_35, SUCROSE TRANSPORTER 4, SUT4, suc4  gene SUT4  function low affinity (10mM) sucrose transporter in sieve elements (phloem)  go_process sucrose transport|GO:0015770||IEA  go_component vacuole|GO:0005773|10948254|IDA  go_component plasma membrane|GO:0005886|10948254|IDA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function sucrose transmembrane transporter activity|GO:0008515|10948254|IGI  go_function sucrose transmembrane transporter activity|GO:0008515|10948254|IMP  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SUT4 (SUCROSE TRANSPORTER 4); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note SUCROSE TRANSPORTER 4 (SUT4); FUNCTIONS IN: sucrose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: sucrose transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT1G22710.1); Has 1770 Blast hits to 1661 proteins in 375 species: Archae - 21; Bacteria - 604; Metazoa - 407; Fungi - 135; Plants - 245; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).  protein_id AT1G09960.1p  transcript_id AT1G09960.1  protein_id AT1G09960.1p  transcript_id AT1G09960.1  
At1g09970	chr1:003252408	0.0	W/3252408-3254964,3255052-3255428	AT1G09970.2 CDS  gene_syn F21M12.36, F21M12_36, LRR XI-23  gene LRR XI-23  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product LRR XI-23; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid autophosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: IKU2 (HAIKU2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G19700.1); Has 140780 Blast hits to 97610 proteins in 3279 species: Archae - 93; Bacteria - 12618; Metazoa - 53588; Fungi - 7077; Plants - 48080; Viruses - 376; Other Eukaryotes - 18948 (source: NCBI BLink).  protein_id AT1G09970.2p  transcript_id AT1G09970.2  protein_id AT1G09970.2p  transcript_id AT1G09970.2  
At1g09970	chr1:003252408	0.0	W/3252408-3254964,3255055-3255428	AT1G09970.1 CDS  gene_syn F21M12.36, F21M12_36, LRR XI-23  gene LRR XI-23  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product LRR XI-23; ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid autophosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: IKU2 (HAIKU2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase (TAIR:AT3G19700.1); Has 143488 Blast hits to 100447 proteins in 3382 species: Archae - 100; Bacteria - 12755; Metazoa - 55128; Fungi - 7263; Plants - 48265; Viruses - 446; Other Eukaryotes - 19531 (source: NCBI BLink).  protein_id AT1G09970.1p  transcript_id AT1G09970.1  protein_id AT1G09970.1p  transcript_id AT1G09970.1  
At1g09980	chr1:003256541	0.0	C/3256541-3256843,3256935-3256985,3257086-3257291,3257385-3257643,3257878-3258126,3258208-3258267,3258354-3258537,3258637-3258767,3258865-3259104,3259495-3259549,3259642-3259895,3260178-3260332,3260509-3260594,3260694-3260866	AT1G09980.2 CDS  gene_syn T27I1.1  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: ZW18 (TAIR:AT1G58350.2); Has 342 Blast hits to 275 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G09980.2p  transcript_id AT1G09980.2  protein_id AT1G09980.2p  transcript_id AT1G09980.2  
At1g09980	chr1:003256541	0.0	C/3256541-3256843,3256935-3256985,3257086-3257291,3257385-3257643,3257878-3258126,3258208-3258267,3258354-3258537,3258637-3258770,3258865-3259104,3259495-3259549,3259642-3259895,3260178-3260332,3260509-3260594,3260694-3260866	AT1G09980.1 CDS  gene_syn T27I1.1  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: ZW18 (TAIR:AT1G58350.2); Has 342 Blast hits to 275 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G09980.1p  transcript_id AT1G09980.1  protein_id AT1G09980.1p  transcript_id AT1G09980.1  
At1g09995	chr1:003262750	0.0	C/3262750-3262908,3263351-3263458	AT1G09995.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: helicase-related (TAIR:AT1G79890.1); Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G09995.1p  transcript_id AT1G09995.1  protein_id AT1G09995.1p  transcript_id AT1G09995.1  
At1g10000	chr1:003263877	0.0	C/3263877-3264788	AT1G10000.1 CDS  gene_syn T27I1.2, T27I1_2  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding / ribonuclease H  note nucleic acid binding / ribonuclease H; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: beta-galactosidase (TAIR:AT2G06845.1); Has 295 Blast hits to 295 proteins in 14 species: Archae - 2; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 291; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10000.1p  transcript_id AT1G10000.1  protein_id AT1G10000.1p  transcript_id AT1G10000.1  
At1g10010	chr1:003265976	0.0	W/3265976-3266297,3266979-3267072,3267187-3267401,3267500-3267642,3267881-3268108,3268301-3268726	AT1G10010.1 CDS  gene_syn AAP8, AMINO ACID PERMEASE 8, T27I1.3, T27I1_3  gene AAP8  function Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity.  go_component membrane|GO:0016020|12244056|ISS  go_process amino acid transport|GO:0006865|12244056|IGI  go_function amino acid transmembrane transporter activity|GO:0015171|12244056|IGI  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product AAP8; amino acid transmembrane transporter  note AAP8; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: embryo, fruit, funicle; EXPRESSED DURING: C globular stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: AAP1 (AMINO ACID PERMEASE 1); amino acid transmembrane transporter/ neutral amino acid transmembrane transporter (TAIR:AT1G58360.1); Has 1981 Blast hits to 1972 proteins in 179 species: Archae - 0; Bacteria - 15; Metazoa - 678; Fungi - 342; Plants - 748; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).  protein_id AT1G10010.1p  transcript_id AT1G10010.1  protein_id AT1G10010.1p  transcript_id AT1G10010.1  
At1g10020	chr1:003269939	0.0	C/3269939-3270698,3271107-3271732	AT1G10020.1 CDS  gene_syn T27I1.4, T27I1_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29310.1); Has 93 Blast hits to 93 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 79; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G10020.1p  transcript_id AT1G10020.1  protein_id AT1G10020.1p  transcript_id AT1G10020.1  
At1g10030	chr1:003273972	0.0	W/3273972-3274086,3275254-3275460,3275564-3275631	AT1G10030.1 CDS  gene_syn Arabidopsis homolog of yeast ergosterol28, ERG28, T27I1.5, T27I1_5  gene ERG28  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  product ERG28 (Arabidopsis homolog of yeast ergosterol28)  note Arabidopsis homolog of yeast ergosterol28 (ERG28); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Erg28-like (InterPro:IPR005352); Has 155 Blast hits to 155 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 64; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G10030.1p  transcript_id AT1G10030.1  protein_id AT1G10030.1p  transcript_id AT1G10030.1  
At1g10040	chr1:003276108	0.0	C/3276108-3276179,3276262-3276359,3276437-3276566,3276657-3276709,3276852-3276907,3277001-3277161,3277332-3277586,3277765-3277835,3278045-3278112,3278190-3278464	AT1G10040.1 CDS  gene_syn T27I1.6, T27I1_6  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 553 Blast hits to 544 proteins in 149 species: Archae - 0; Bacteria - 23; Metazoa - 136; Fungi - 170; Plants - 104; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G10040.1p  transcript_id AT1G10040.1  protein_id AT1G10040.1p  transcript_id AT1G10040.1  
At1g10040	chr1:003276124	0.0	C/3276124-3276179,3276258-3276359,3276437-3276566,3276657-3276709,3276852-3276907,3277001-3277161,3277332-3277586,3277765-3277835,3278045-3278112,3278190-3278464	AT1G10040.2 CDS  gene_syn T27I1.6, T27I1_6  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 544 Blast hits to 540 proteins in 149 species: Archae - 0; Bacteria - 23; Metazoa - 136; Fungi - 170; Plants - 98; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G10040.2p  transcript_id AT1G10040.2  protein_id AT1G10040.2p  transcript_id AT1G10040.2  
At1g10050	chr1:003279270	0.0	W/3279270-3279607,3279690-3279849,3280286-3280632,3280715-3280874,3280971-3281317,3281440-3281617,3281701-3282246,3282329-3283444	AT1G10050.1 CDS  gene_syn ATXYN2, T27I1.7, T27I1_7  function Encodes a putative glycosyl hydrolase family 10 protein (xylanase).  go_process carbohydrate metabolic process|GO:0005975||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function endo-1,4-beta-xylanase activity|GO:0031176|12154138|ISS  product glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein  note glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G58370.1); Has 1575 Blast hits to 1335 proteins in 275 species: Archae - 0; Bacteria - 809; Metazoa - 52; Fungi - 276; Plants - 256; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT1G10050.1p  transcript_id AT1G10050.1  protein_id AT1G10050.1p  transcript_id AT1G10050.1  
At1g10060	chr1:003284445	0.0	W/3284445-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286358,3286534-3286577	AT1G10060.1 CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1, ATBCAT-1, T27I1.8, T27I1_8  gene ATBCAT-1  function encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component mitochondrion|GO:0005739|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  go_function branched-chain-amino-acid transaminase activity|GO:0004084|15821880|IDA  product branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (ATBCAT-1); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT1G10070.2); Has 4118 Blast hits to 4116 proteins in 1209 species: Archae - 70; Bacteria - 2392; Metazoa - 242; Fungi - 241; Plants - 134; Viruses - 0; Other Eukaryotes - 1039 (source: NCBI BLink).  protein_id AT1G10060.1p  transcript_id AT1G10060.1  protein_id AT1G10060.1p  transcript_id AT1G10060.1  
At1g10060	chr1:003284445	0.0	W/3284445-3284501,3284652-3284725,3285166-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286646,3286723-3286837	AT1G10060.2 CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1, ATBCAT-1, T27I1.8, T27I1_8  gene ATBCAT-1  function encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component mitochondrion|GO:0005739|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  go_function branched-chain-amino-acid transaminase activity|GO:0004084|15821880|IDA  product branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (ATBCAT-1); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT1G10070.2); Has 8252 Blast hits to 8250 proteins in 1371 species: Archae - 99; Bacteria - 4091; Metazoa - 244; Fungi - 257; Plants - 157; Viruses - 0; Other Eukaryotes - 3404 (source: NCBI BLink).  protein_id AT1G10060.2p  transcript_id AT1G10060.2  protein_id AT1G10060.2p  transcript_id AT1G10060.2  
At1g10060	chr1:003285233	0.0	W/3285233-3285340,3285425-3285601,3285687-3285818,3285897-3285995,3286092-3286208,3286304-3286399,3286534-3286646,3286723-3286837	AT1G10060.3 CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1, ATBCAT-1, T27I1.8, T27I1_8  gene ATBCAT-1  function encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component mitochondrion|GO:0005739|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  go_function branched-chain-amino-acid transaminase activity|GO:0004084|15821880|IDA  product branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (ATBCAT-1); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT1G10070.3); Has 8254 Blast hits to 8254 proteins in 1374 species: Archae - 99; Bacteria - 4101; Metazoa - 244; Fungi - 259; Plants - 155; Viruses - 0; Other Eukaryotes - 3396 (source: NCBI BLink).  protein_id AT1G10060.3p  transcript_id AT1G10060.3  protein_id AT1G10060.3p  transcript_id AT1G10060.3  
At1g10070	chr1:003288255	0.0	W/3288255-3288320,3288431-3288504,3288602-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.1 CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2, ATBCAT-2, T27I1.9, T27I1_9  gene ATBCAT-2  function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component chloroplast|GO:0009507|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  product ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2 (ATBCAT-2); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT3G49680.2); Has 8227 Blast hits to 8227 proteins in 1365 species: Archae - 99; Bacteria - 4060; Metazoa - 244; Fungi - 259; Plants - 155; Viruses - 0; Other Eukaryotes - 3410 (source: NCBI BLink).  protein_id AT1G10070.1p  transcript_id AT1G10070.1  protein_id AT1G10070.1p  transcript_id AT1G10070.1  
At1g10070	chr1:003288255	0.0	W/3288255-3288320,3288431-3288504,3288602-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.2 CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2, ATBCAT-2, T27I1.9, T27I1_9  gene ATBCAT-2  function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component chloroplast|GO:0009507|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  product ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2 (ATBCAT-2); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3); branched-chain-amino-acid transaminase/ catalytic (TAIR:AT3G49680.2); Has 8227 Blast hits to 8227 proteins in 1365 species: Archae - 99; Bacteria - 4060; Metazoa - 244; Fungi - 259; Plants - 155; Viruses - 0; Other Eukaryotes - 3410 (source: NCBI BLink).  protein_id AT1G10070.2p  transcript_id AT1G10070.2  protein_id AT1G10070.2p  transcript_id AT1G10070.2  
At1g10070	chr1:003288672	0.0	W/3288672-3288779,3288861-3289037,3289120-3289251,3289329-3289427,3289503-3289619,3289682-3289777,3289856-3289968,3290050-3290164	AT1G10070.3 CDS  gene_syn ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2, ATBCAT-2, T27I1.9, T27I1_9  gene ATBCAT-2  function Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.  go_process metabolic process|GO:0008152||IEA  go_process branched chain family amino acid metabolic process|GO:0009081||IEA  go_component chloroplast|GO:0009507|12068099|IDA  go_function catalytic activity|GO:0003824||ISS  go_function branched-chain-amino-acid transaminase activity|GO:0004084|12068099|IGI  product ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic  note ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2 (ATBCAT-2); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: ATBCAT-5; branched-chain-amino-acid transaminase/ catalytic (TAIR:AT5G65780.1); Has 8220 Blast hits to 8220 proteins in 1365 species: Archae - 99; Bacteria - 4060; Metazoa - 244; Fungi - 259; Plants - 155; Viruses - 0; Other Eukaryotes - 3403 (source: NCBI BLink).  protein_id AT1G10070.3p  transcript_id AT1G10070.3  protein_id AT1G10070.3p  transcript_id AT1G10070.3  
At1g10090	chr1:003290572	0.0	C/3290572-3290886,3290976-3291209,3291679-3291954,3292051-3292327,3292599-3292897,3293270-3293455,3294130-3294339,3294462-3294525,3294676-3294822,3294991-3295271	AT1G10090.1 CDS  gene_syn T27I1.11, T27I1_11  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58520.1); Has 914 Blast hits to 823 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 448; Plants - 243; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G10090.1p  transcript_id AT1G10090.1  protein_id AT1G10090.1p  transcript_id AT1G10090.1  
At1g10095	chr1:003297478	0.0	C/3297478-3297597,3297756-3297992,3298340-3298390,3298489-3298572,3298745-3298822,3299054-3299122,3299360-3299450,3299633-3299743,3299838-3300176,3300271-3300353	AT1G10095.1 CDS  go_process protein amino acid prenylation|GO:0018346||IEA  go_function protein prenyltransferase activity|GO:0008318||IEA  go_component cellular_component|GO:0005575||ND  product protein prenyltransferase  note protein prenyltransferase; FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: protein amino acid prenylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: FTA (FARNESYLTRANSFERASE A); farnesyltranstransferase/ protein heterodimerization/ protein prenyltransferase (TAIR:AT3G59380.1); Has 657 Blast hits to 562 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 69; Plants - 74; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G10095.1p  transcript_id AT1G10095.1  protein_id AT1G10095.1p  transcript_id AT1G10095.1  
At1g10100	chr1:003300697	0.0	C/3300697-3300836,3300967-3301098,3301200-3301254,3301328-3301489	AT1G10100.1 CDS  gene_syn T27I1.17, T27I1_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10100.1p  transcript_id AT1G10100.1  protein_id AT1G10100.1p  transcript_id AT1G10100.1  
At1g10110	chr1:003302940	0.0	W/3302940-3303938	AT1G10110.1 CDS  gene_syn T27I1.14, T27I1_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22060.1); Has 126 Blast hits to 124 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10110.1p  transcript_id AT1G10110.1  protein_id AT1G10110.1p  transcript_id AT1G10110.1  
At1g10120	chr1:003304228	0.0	C/3304228-3304250,3304341-3304425,3304515-3304634,3304727-3304798,3304897-3304965,3305051-3305116,3305219-3305410,3305511-3305984	AT1G10120.1 CDS  gene_syn T27I1.15, T27I1_15  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.2); Has 1348 Blast hits to 1348 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 53; Fungi - 14; Plants - 1271; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G10120.1p  transcript_id AT1G10120.1  protein_id AT1G10120.1p  transcript_id AT1G10120.1  
At1g10130	chr1:003311139	0.0	W/3311139-3311171,3311372-3311422,3311527-3311560,3311966-3311983,3312399-3312535,3312921-3312995,3313228-3313273,3313604-3313663,3313764-3313844,3314106-3314191,3314347-3314448,3314744-3314797,3315074-3315175,3315546-3315604,3315895-3316039,3316382-3316489,3316928-3317080,3317338-3317442,3317799-3317995,3318155-3318263,3318368-3318466,3318545-3318690,3318846-3318903,3319092-3319184,3319650-3319700,3319904-3320035,3320129-3320230,3320567-3320621,3320783-3320868,3320985-3321133,3321212-3321317,3321407-3321460,3321697-3321742,3321877-3321941	AT1G10130.1 CDS  gene_syn ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, ATECA3, ECA3, ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3, T27I1.16, T27I1_16  gene ECA3  function Encodes a golgi localized P2A-type Ca2+ ATPase involved in Mn nutrition and homeostasis.  go_component Golgi apparatus|GO:0005794|18024560|IDA  go_component endomembrane system|GO:0012505|18567829|IDA  go_process calcium ion transport|GO:0006816|10433975|ISS  go_process manganese ion transport|GO:0006828|18024560|IGI  go_process root development|GO:0048364|18567829|IMP  go_process manganese ion homeostasis|GO:0055071|18024560|IMP  go_function peroxidase activity|GO:0004601|18567829|IDA  go_function calcium-transporting ATPase activity|GO:0005388|10433975|ISS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|18567829|IMP  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function manganese-transporting ATPase activity|GO:0015410|18567829|IMP  product ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3); calcium-transporting ATPase/ calmodulin binding / manganese-transporting ATPase/ peroxidase  note ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3 (ECA3); FUNCTIONS IN: manganese-transporting ATPase activity, peroxidase activity, calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: manganese ion transport, calcium ion transport, manganese ion homeostasis, root development; LOCATED IN: endomembrane system, Golgi apparatus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: calcium-transporting ATPase (TAIR:AT1G07670.1); Has 28834 Blast hits to 19479 proteins in 1896 species: Archae - 661; Bacteria - 18088; Metazoa - 3638; Fungi - 1889; Plants - 1417; Viruses - 3; Other Eukaryotes - 3138 (source: NCBI BLink).  protein_id AT1G10130.1p  transcript_id AT1G10130.1  protein_id AT1G10130.1p  transcript_id AT1G10130.1  
At1g10140	chr1:003322970	0.0	C/3322970-3323473	AT1G10140.1 CDS  gene_syn F14N23.2, F14N23_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031279 (InterPro:IPR016972); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58420.1); Has 38 Blast hits to 38 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G10140.1p  transcript_id AT1G10140.1  protein_id AT1G10140.1p  transcript_id AT1G10140.1  
At1g10150	chr1:003326160	0.0	W/3326160-3327404	AT1G10150.1 CDS  gene_syn ATPP2-A10, F14N23.3, F14N23_3, PHLOEM PROTEIN 2-A10  go_component mitochondrion|GO:0005739||IEA  go_function carbohydrate binding|GO:0030246|12529520|ISS  product carbohydrate binding  note carbohydrate binding; FUNCTIONS IN: carbohydrate binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: CF9 (TAIR:AT1G59510.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10150.1p  transcript_id AT1G10150.1  protein_id AT1G10150.1p  transcript_id AT1G10150.1  
At1g10155	chr1:003327637	0.0	C/3327637-3328036,3328171-3328262,3328386-3328448	AT1G10155.1 CDS  gene_syn ATPP2-A10, PHLOEM PROTEIN 2-A10  gene ATPP2-A10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATPP2-A10 (PHLOEM PROTEIN 2-A10)  note PHLOEM PROTEIN 2-A10 (ATPP2-A10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATPP2-A9 (Phloem protein 2-A9); carbohydrate binding (TAIR:AT1G31200.1); Has 46 Blast hits to 46 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10155.1p  transcript_id AT1G10155.1  protein_id AT1G10155.1p  transcript_id AT1G10155.1  
At1g10160	chr1:003328971	0.0	W/3328971-3333470	AT1G10160.1 mRNA_TE_gene  pseudo  gene_syn F14N23.4, F14N23_4  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.9e-39 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)  
At1g10170	chr1:003333925	0.0	C/3333925-3337491	AT1G10170.1 CDS  gene_syn ARABIDOPSIS THALIANA NF-X-LIKE 1, ATNFXL1, F14N23.5, F14N23_5  gene ATNFXL1  function Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.  go_function transcription factor activity|GO:0003700||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|16905136|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to light intensity|GO:0009642|16905136|IMP  go_process response to salt stress|GO:0009651|16905136|IMP  go_process salicylic acid biosynthetic process|GO:0009697|18069941|IMP  go_process response to microbial phytotoxin|GO:0010188|18069941|IMP  go_process defense response to bacterium|GO:0042742|18069941|IMP  go_function transcription factor activity|GO:0003700||ISS  product ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1); protein binding / transcription factor/ zinc ion binding  note ARABIDOPSIS THALIANA NF-X-LIKE 1 (ATNFXL1); FUNCTIONS IN: protein binding, transcription factor activity, zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: ATNFXL2; protein binding / transcription factor/ zinc ion binding (TAIR:AT5G05660.1); Has 5966 Blast hits to 3261 proteins in 191 species: Archae - 0; Bacteria - 76; Metazoa - 4504; Fungi - 396; Plants - 144; Viruses - 3; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT1G10170.1p  transcript_id AT1G10170.1  protein_id AT1G10170.1p  transcript_id AT1G10170.1  
At1g10180	chr1:003338381	0.0	C/3338381-3338648,3338739-3338875,3339047-3339235,3339322-3339828,3339912-3340929,3341076-3341170,3341399-3341494	AT1G10180.1 CDS  gene_syn F14N23.6, F14N23_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49830.1); Has 70 Blast hits to 70 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G10180.1p  transcript_id AT1G10180.1  protein_id AT1G10180.1p  transcript_id AT1G10180.1  
At1g10190	chr1:003343765	0.0	C/3343765-3344130,3344236-3344379,3344472-3344525,3344676-3344828,3344923-3345141,3345242-3345334,3345430-3345591	AT1G10190.1 CDS  gene_syn F14N23.7, F14N23_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15050.1); Has 372 Blast hits to 349 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 368; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10190.1p  transcript_id AT1G10190.1  protein_id AT1G10190.1p  transcript_id AT1G10190.1  
At1g10200	chr1:003346677	0.0	C/3346677-3346883,3347021-3347110,3347198-3347241,3347341-3347437,3347629-3347763	AT1G10200.1 CDS  gene_syn F14N23.8, F14N23_8, WLIM1  gene WLIM1  go_component plasma membrane|GO:0005886|17317660|IDA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function transcription factor activity|GO:0003700||ISS  product WLIM1; transcription factor/ zinc ion binding  note WLIM1; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT2G39900.1); Has 3534 Blast hits to 2197 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 2928; Fungi - 23; Plants - 293; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT1G10200.1p  transcript_id AT1G10200.1  protein_id AT1G10200.1p  transcript_id AT1G10200.1  
At1g10210	chr1:003349579	0.0	W/3349579-3350001,3350087-3350776	AT1G10210.1 CDS  gene_syn ATMPK1, F14N23.9, F14N23_9, MITOGEN-ACTIVATED PROTEIN KINASE, MITOGEN-ACTIVATED PROTEIN KINASE 1, MPK1  gene ATMPK1  function Encodes ATMPK1.  go_process signal transduction|GO:0007165|12119167|IC  go_process auxin mediated signaling pathway|GO:0009734|8130795|TAS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function MAP kinase activity|GO:0004707|8130795|IDA  go_function kinase activity|GO:0016301||ISS  product ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1); MAP kinase/ kinase  note MITOGEN-ACTIVATED PROTEIN KINASE 1 (ATMPK1); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: auxin mediated signaling pathway, signal transduction; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2); MAP kinase/ kinase/ protein kinase (TAIR:AT1G59580.2); Has 88207 Blast hits to 87041 proteins in 3132 species: Archae - 41; Bacteria - 6651; Metazoa - 39210; Fungi - 8049; Plants - 16856; Viruses - 441; Other Eukaryotes - 16959 (source: NCBI BLink).  protein_id AT1G10210.1p  transcript_id AT1G10210.1  protein_id AT1G10210.1p  transcript_id AT1G10210.1  
At1g10210	chr1:003349579	0.0	W/3349579-3350001,3350087-3350776	AT1G10210.2 CDS  gene_syn ATMPK1, F14N23.9, F14N23_9, MITOGEN-ACTIVATED PROTEIN KINASE, MITOGEN-ACTIVATED PROTEIN KINASE 1, MPK1  gene ATMPK1  function Encodes ATMPK1.  go_process signal transduction|GO:0007165|12119167|IC  go_process auxin mediated signaling pathway|GO:0009734|8130795|TAS  go_function MAP kinase activity|GO:0004707|12119167|ISS  go_function MAP kinase activity|GO:0004707|8130795|IDA  go_function kinase activity|GO:0016301||ISS  product ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1); MAP kinase/ kinase  note MITOGEN-ACTIVATED PROTEIN KINASE 1 (ATMPK1); FUNCTIONS IN: MAP kinase activity, kinase activity; INVOLVED IN: auxin mediated signaling pathway, signal transduction; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2); MAP kinase/ kinase/ protein kinase (TAIR:AT1G59580.2); Has 88207 Blast hits to 87041 proteins in 3132 species: Archae - 41; Bacteria - 6651; Metazoa - 39210; Fungi - 8049; Plants - 16856; Viruses - 441; Other Eukaryotes - 16959 (source: NCBI BLink).  protein_id AT1G10210.2p  transcript_id AT1G10210.2  protein_id AT1G10210.2p  transcript_id AT1G10210.2  
At1g10220	chr1:003352159	0.0	W/3352159-3352632,3354361-3354690	AT1G10220.1 CDS  gene_syn F14N23.10, F14N23_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: ZCF37 (TAIR:AT1G59590.1); Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G10220.1p  transcript_id AT1G10220.1  protein_id AT1G10220.1p  transcript_id AT1G10220.1  
At1g10220	chr1:003354364	0.0	W/3354364-3354690	AT1G10220.2 CDS  gene_syn F14N23.10, F14N23_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown.  protein_id AT1G10220.2p  transcript_id AT1G10220.2  protein_id AT1G10220.2p  transcript_id AT1G10220.2  
At1g10230	chr1:003355600	0.0	W/3355600-3356151	AT1G10230.1 CDS  gene_syn ARABIDOPSIS SKP1-LIKE 18, ASK18, F14N23.11, F14N23_11  gene ASK18  go_process ubiquitin-dependent protein catabolic process|GO:0006511||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|14749489|IPI  product ASK18 (ARABIDOPSIS SKP1-LIKE 18); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 18 (ASK18); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK15 (ARABIDOPSIS SKP1-LIKE 15); protein binding / ubiquitin-protein ligase (TAIR:AT3G25650.1); Has 1086 Blast hits to 1084 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 473; Fungi - 107; Plants - 362; Viruses - 11; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G10230.1p  transcript_id AT1G10230.1  protein_id AT1G10230.1p  transcript_id AT1G10230.1  
At1g10240	chr1:003356835	0.0	C/3356835-3357455,3357651-3358094,3358294-3359271	AT1G10240.1 CDS  gene_syn F14N23.12, F14N23_12, FAR1-related sequence 11, FRS11  gene FRS11  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process response to red or far red light|GO:0009639||ISS  product FRS11 (FAR1-related sequence 11); zinc ion binding  note FAR1-related sequence 11 (FRS11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FRS10 (FAR1-related sequence 10); zinc ion binding (TAIR:AT5G28530.1); Has 770 Blast hits to 690 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 74; Plants - 691; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G10240.1p  transcript_id AT1G10240.1  protein_id AT1G10240.1p  transcript_id AT1G10240.1  
At1g10250	chr1:003360137	0.0	C/3360137-3360232,3360325-3360462	AT1G10250.1 CDS  gene_syn F14N23.13, F14N23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: SNL6 (SIN3-LIKE 6) (TAIR:AT1G10450.1); Has 222 Blast hits to 222 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 19; Plants - 43; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G10250.1p  transcript_id AT1G10250.1  protein_id AT1G10250.1p  transcript_id AT1G10250.1  
At1g10260	chr1:003360526	0.0	C/3360526-3361247	AT1G10260.1 mRNA_TE_gene  pseudo  gene_syn F14N23.14, F14N23_14  note Transposable element gene, copia-like retrotransposon family, has a 3.6e-19 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g10270	chr1:003363535	0.0	W/3363535-3366276	AT1G10270.1 CDS  gene_syn F14N23.15, F14N23_15, GLUTAMINE-RICH PROTEIN23, GRP23  gene GRP23  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|16489121|IDA  go_process embryonic development|GO:0009790|16489121|IMP  go_process cell division|GO:0051301|16489121|IMP  product GRP23 (GLUTAMINE-RICH PROTEIN23); binding  note GLUTAMINE-RICH PROTEIN23 (GRP23); FUNCTIONS IN: binding; INVOLVED IN: embryonic development, cell division; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: emb1796 (embryo defective 1796); ATP binding (TAIR:AT3G49240.1); Has 29136 Blast hits to 12633 proteins in 643 species: Archae - 23; Bacteria - 1240; Metazoa - 6890; Fungi - 2367; Plants - 11880; Viruses - 167; Other Eukaryotes - 6569 (source: NCBI BLink).  protein_id AT1G10270.1p  transcript_id AT1G10270.1  protein_id AT1G10270.1p  transcript_id AT1G10270.1  
At1g10280	chr1:003366795	0.0	C/3366795-3367436,3368143-3368739	AT1G10280.1 CDS  gene_syn F14N23.16, F14N23_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21310.1); Has 332 Blast hits to 332 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G10280.1p  transcript_id AT1G10280.1  protein_id AT1G10280.1p  transcript_id AT1G10280.1  
At1g10290	chr1:003370774	0.0	W/3370774-3370914,3371198-3371248,3371345-3371465,3371595-3371687,3372032-3372093,3372264-3372381,3372528-3372864,3372970-3373117,3373444-3373545,3373626-3373745,3374013-3374096,3374181-3374308,3374412-3374496,3374614-3374752,3374978-3375054,3375125-3375181,3375464-3375608,3375696-3375835,3376175-3376288,3376402-3376469,3376553-3376725,3376879-3377120	AT1G10290.1 CDS  gene_syn ADL6, DRP2A, DYNAMIN-LIKE PROTEIN 6, DYNAMIN-RELATED PROTEIN 2A, F14N23.17, F14N23_17  gene ADL6  function involved in trafficking from the trans-Golgi Network to the central vacuole.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|11449048|IDA  go_process Golgi to vacuole transport|GO:0006896|11449048|IMP  go_function GTPase activity|GO:0003924|11449048|ISS  product ADL6 (DYNAMIN-LIKE PROTEIN 6); GTPase  note DYNAMIN-LIKE PROTEIN 6 (ADL6); FUNCTIONS IN: GTPase activity; INVOLVED IN: Golgi to vacuole transport; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Pleckstrin homology-type (InterPro:IPR011993), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3); GTPase (TAIR:AT1G59610.1); Has 2422 Blast hits to 2318 proteins in 255 species: Archae - 4; Bacteria - 61; Metazoa - 1270; Fungi - 444; Plants - 392; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink).  protein_id AT1G10290.1p  transcript_id AT1G10290.1  protein_id AT1G10290.1p  transcript_id AT1G10290.1  
At1g10300	chr1:003378142	0.0	W/3378142-3379248,3379270-3380226	AT1G10300.1 CDS  gene_syn F14N23.18, F14N23_18  go_function GTP binding|GO:0005525||IEA  product GTP-binding protein-related  note GTP-binding protein-related; FUNCTIONS IN: GTP binding; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), NOG, C-terminal (InterPro:IPR012973); BEST Arabidopsis thaliana protein match is: GTP-binding protein-related (TAIR:AT1G50920.1); Has 5765 Blast hits to 5592 proteins in 1148 species: Archae - 218; Bacteria - 2528; Metazoa - 822; Fungi - 262; Plants - 128; Viruses - 2; Other Eukaryotes - 1805 (source: NCBI BLink).  protein_id AT1G10300.1p  transcript_id AT1G10300.1  protein_id AT1G10300.1p  transcript_id AT1G10300.1  
At1g10310	chr1:003381733	0.0	C/3381733-3381802,3382025-3382197,3382683-3382876,3383282-3383351,3383653-3383874	AT1G10310.1 CDS  gene_syn F14N23.19, F14N23_19  function encodes a NADPH-dependent pterin aldehyde reductase that accepts pterin aldehyde as well as dihydropterin aldehyde as substrates involved in metabolism and salvage of folate and its derivatives.  go_component cytosol|GO:0005829|17550420|IDA  go_process folic acid and derivative metabolic process|GO:0006760|17550420|IDA  go_function oxidoreductase activity|GO:0016491||ISS  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616|17550420|IDA  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: folic acid and derivative metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: short-chain dehydrogenase/reductase (SDR) family protein (TAIR:AT3G55290.2); Has 77377 Blast hits to 77226 proteins in 2224 species: Archae - 444; Bacteria - 43755; Metazoa - 6064; Fungi - 3987; Plants - 1646; Viruses - 2; Other Eukaryotes - 21479 (source: NCBI BLink).  protein_id AT1G10310.1p  transcript_id AT1G10310.1  protein_id AT1G10310.1p  transcript_id AT1G10310.1  
At1g10320	chr1:003384164	0.0	C/3384164-3385058,3385183-3385394,3385467-3385541,3385952-3386068,3386374-3386466,3387251-3387409,3387508-3387666,3387724-3387882,3387969-3388373	AT1G10320.1 CDS  gene_syn F14N23.20, F14N23_20  go_component nucleus|GO:0005634||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function RNA binding|GO:0003723||ISS  product U2 snRNP auxiliary factor-related  note U2 snRNP auxiliary factor-related; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, region 1 (InterPro:IPR003954), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT5G42820.2); Has 96468 Blast hits to 37209 proteins in 1471 species: Archae - 214; Bacteria - 8322; Metazoa - 45541; Fungi - 8158; Plants - 3658; Viruses - 590; Other Eukaryotes - 29985 (source: NCBI BLink).  protein_id AT1G10320.1p  transcript_id AT1G10320.1  protein_id AT1G10320.1p  transcript_id AT1G10320.1  
At1g10330	chr1:003388747	0.0	W/3388747-3390150	AT1G10330.1 CDS  gene_syn F14N23.21, F14N23_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 11485 Blast hits to 4434 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 26; Plants - 11160; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT1G10330.1p  transcript_id AT1G10330.1  protein_id AT1G10330.1p  transcript_id AT1G10330.1  
At1g10340	chr1:003390475	0.0	C/3390475-3391335,3391517-3391956,3392046-3392481	AT1G10340.1 CDS  gene_syn F14N23.22, F14N23_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT2G24600.3); Has 18692 Blast hits to 10007 proteins in 394 species: Archae - 19; Bacteria - 1110; Metazoa - 11135; Fungi - 977; Plants - 1495; Viruses - 133; Other Eukaryotes - 3823 (source: NCBI BLink).  protein_id AT1G10340.1p  transcript_id AT1G10340.1  protein_id AT1G10340.1p  transcript_id AT1G10340.1  
At1g10340	chr1:003390475	0.0	C/3390475-3391335,3391517-3391956,3392058-3392481	AT1G10340.2 CDS  gene_syn F14N23.22, F14N23_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT2G24600.3); Has 16783 Blast hits to 9155 proteins in 364 species: Archae - 12; Bacteria - 1021; Metazoa - 10033; Fungi - 808; Plants - 1480; Viruses - 97; Other Eukaryotes - 3332 (source: NCBI BLink).  protein_id AT1G10340.2p  transcript_id AT1G10340.2  protein_id AT1G10340.2p  transcript_id AT1G10340.2  
At1g10350	chr1:003393595	0.0	C/3393595-3394033,3394250-3394860	AT1G10350.1 CDS  gene_syn F14N23.23, F14N23_23  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock protein, putative  note DNAJ heat shock protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock protein, putative (TAIR:AT1G59725.1); Has 19690 Blast hits to 19405 proteins in 2073 species: Archae - 113; Bacteria - 5759; Metazoa - 3795; Fungi - 1695; Plants - 1434; Viruses - 18; Other Eukaryotes - 6876 (source: NCBI BLink).  protein_id AT1G10350.1p  transcript_id AT1G10350.1  protein_id AT1G10350.1p  transcript_id AT1G10350.1  
At1g10360	chr1:003395738	0.0	C/3395738-3396100,3396486-3396806	AT1G10360.1 CDS  gene_syn ATGSTU18, F14N23.24, F14N23_24, GLUTATHIONE S-TRANSFERASE 29, GLUTATHIONE S-TRANSFERASE TAU 18, GST29  gene ATGSTU18  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 18 (ATGSTU18); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9); glutathione transferase (TAIR:AT1G10370.1); Has 3218 Blast hits to 3215 proteins in 684 species: Archae - 0; Bacteria - 1545; Metazoa - 186; Fungi - 69; Plants - 1032; Viruses - 0; Other Eukaryotes - 386 (source: NCBI BLink).  protein_id AT1G10360.1p  transcript_id AT1G10360.1  protein_id AT1G10360.1p  transcript_id AT1G10360.1  
At1g10370	chr1:003397274	0.0	C/3397274-3397636,3397953-3398273	AT1G10370.1 CDS  gene_syn ATGSTU17, EARLY-RESPONSIVE TO DEHYDRATION 9, ERD9, F14N23.26, F14N23_26, GLUTATHIONE S-TRANSFERASE, GLUTATHIONE S-TRANSFERASE 30, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE TAU 17, GST30, GST30B  gene ERD9  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to water deprivation|GO:0009414|8075396|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9); glutathione transferase  note EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18); glutathione transferase (TAIR:AT1G10360.1); Has 3306 Blast hits to 3303 proteins in 662 species: Archae - 0; Bacteria - 1571; Metazoa - 184; Fungi - 70; Plants - 1070; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink).  protein_id AT1G10370.1p  transcript_id AT1G10370.1  protein_id AT1G10370.1p  transcript_id AT1G10370.1  
At1g10380	chr1:003400706	0.0	W/3400706-3401196,3401481-3401845,3402049-3402110	AT1G10380.1 CDS  gene_syn F14N23.27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 148 Blast hits to 147 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10380.1p  transcript_id AT1G10380.1  protein_id AT1G10380.1p  transcript_id AT1G10380.1  
At1g10385	chr1:003403224	0.0	W/3403224-3403382,3403487-3403584,3403678-3404713,3404801-3405627,3405712-3405856	AT1G10385.1 CDS  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Vps51/Vps67 (InterPro:IPR014812); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49830.1); Has 304 Blast hits to 243 proteins in 98 species: Archae - 0; Bacteria - 22; Metazoa - 141; Fungi - 74; Plants - 62; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G10385.1p  transcript_id AT1G10385.1  protein_id AT1G10385.1p  transcript_id AT1G10385.1  
At1g10390	chr1:003407265	0.0	C/3407265-3407944,3408031-3408072,3408415-3408589,3408697-3408813,3409033-3409171,3409289-3409349,3409426-3409513,3409691-3410325,3410425-3410652,3410768-3411415,3411596-3411889,3412027-3412045	AT1G10390.1 CDS  gene_syn F14N23.29, F14N23_29  go_component nuclear pore|GO:0005643||IEA  go_component chloroplast|GO:0009507||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||ISS  product nucleoporin family protein  note nucleoporin family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: nucleoporin family protein (TAIR:AT1G59660.1); Has 64864 Blast hits to 25574 proteins in 1296 species: Archae - 105; Bacteria - 15037; Metazoa - 20267; Fungi - 10858; Plants - 3281; Viruses - 699; Other Eukaryotes - 14617 (source: NCBI BLink).  protein_id AT1G10390.1p  transcript_id AT1G10390.1  protein_id AT1G10390.1p  transcript_id AT1G10390.1  
At1g10390	chr1:003407265	0.0	C/3407265-3407944,3408031-3408072,3408415-3408589,3408697-3408813,3409033-3409171,3409289-3409349,3409426-3409513,3409691-3410325,3410425-3410652,3410768-3411415,3411596-3411889,3412027-3412045	AT1G10390.2 CDS  gene_syn F14N23.29, F14N23_29  go_component nuclear pore|GO:0005643||IEA  go_component chloroplast|GO:0009507||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||ISS  product nucleoporin family protein  note nucleoporin family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: nucleoporin family protein (TAIR:AT1G59660.1); Has 64864 Blast hits to 25574 proteins in 1296 species: Archae - 105; Bacteria - 15037; Metazoa - 20267; Fungi - 10858; Plants - 3281; Viruses - 699; Other Eukaryotes - 14617 (source: NCBI BLink).  protein_id AT1G10390.2p  transcript_id AT1G10390.2  protein_id AT1G10390.2p  transcript_id AT1G10390.2  
At1g10400	chr1:003414869	0.0	C/3414869-3415508,3415595-3416358	AT1G10400.1 CDS  gene_syn F14N23.30, F14N23_30  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product UDP-glycosyltransferase/ transferase, transferring glycosyl groups  note UDP-glycosyltransferase/ transferase, transferring glycosyl groups; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213), Tudor subgroup (InterPro:IPR018351); BEST Arabidopsis thaliana protein match is: transferase, transferring glycosyl groups (TAIR:AT5G14860.1); Has 4255 Blast hits to 4211 proteins in 294 species: Archae - 0; Bacteria - 69; Metazoa - 1364; Fungi - 10; Plants - 2711; Viruses - 78; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G10400.1p  transcript_id AT1G10400.1  protein_id AT1G10400.1p  transcript_id AT1G10400.1  
At1g10410	chr1:003416842	0.0	C/3416842-3416943,3417026-3417148,3417238-3417432,3417520-3417648,3417737-3417899,3417993-3418128,3418216-3418557,3418652-3418732,3419078-3419264	AT1G10410.1 CDS  gene_syn F14N23.31, F14N23_31  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: CW14 (TAIR:AT1G59650.1); Has 144 Blast hits to 144 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 115; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G10410.1p  transcript_id AT1G10410.1  protein_id AT1G10410.1p  transcript_id AT1G10410.1  
At1g10417	chr1:003424616	0.0	C/3424616-3424641,3424899-3425066,3425307-3425380,3425573-3425640,3425769-3425846,3425922-3425981,3426075-3426211,3426380-3426436,3426547-3426721,3426854-3426964,3427037-3427135,3427215-3427457	AT1G10417.1 CDS  function Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding (TAIR:AT5G41790.1); Has 58 Blast hits to 58 proteins in 24 species: Archae - 2; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 7; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G10417.1p  transcript_id AT1G10417.1  protein_id AT1G10417.1p  transcript_id AT1G10417.1  
At1g10419	chr1:003428031	0.0	W/3428031-3428425	AT1G10419.1 pseudogenic_transcript  pseudo  function Pseudogene of AT1G10419  
At1g10430	chr1:003428705	0.0	C/3428705-3428878,3428953-3429144,3429329-3429406,3429486-3429594,3429714-3429828,3430185-3430437	AT1G10430.1 CDS  gene_syn PP2A-2, PROTEIN PHOSPHATASE 2A, PROTEIN PHOSPHATASE 2A-2, T10O24.4, T10O24_4  gene PP2A-2  function Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722|8382968|ISS  product PP2A-2; protein serine/threonine phosphatase  note PP2A-2; FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: PP2A-1; protein serine/threonine phosphatase (TAIR:AT1G59830.1); Has 5264 Blast hits to 5140 proteins in 350 species: Archae - 49; Bacteria - 113; Metazoa - 2047; Fungi - 931; Plants - 602; Viruses - 5; Other Eukaryotes - 1517 (source: NCBI BLink).  protein_id AT1G10430.1p  transcript_id AT1G10430.1  protein_id AT1G10430.1p  transcript_id AT1G10430.1  
At1g10440	chr1:003431185	0.0	C/3431185-3431256	AT1G10440.1 tRNA  gene_syn 51200.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G10440.1  
At1g10450	chr1:003432160	0.0	W/3432160-3432386,3432541-3432663,3432779-3432959,3433047-3433145,3433260-3433403,3433619-3433709,3433947-3434170,3434266-3434420,3434672-3434799,3434892-3435146,3435368-3435867,3436058-3436651,3436743-3436831,3436908-3437046,3437151-3437303,3437381-3437541,3437621-3437732,3437833-3437979	AT1G10450.1 CDS  gene_syn SIN3-LIKE 6, SNL6, T10O24.5, T10O24_5  gene SNL6  function Encodes SIN3-like 6, a homolog of the transcriptional repressor SIN3 (AT1G24190).  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  product SNL6 (SIN3-LIKE 6)  note SIN3-LIKE 6 (SNL6); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL5 (SIN3-LIKE 5) (TAIR:AT1G59890.1); Has 1728 Blast hits to 713 proteins in 151 species: Archae - 0; Bacteria - 19; Metazoa - 790; Fungi - 466; Plants - 223; Viruses - 2; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT1G10450.1p  transcript_id AT1G10450.1  protein_id AT1G10450.1p  transcript_id AT1G10450.1  
At1g10455	chr1:003438555	0.0	W/3438555-3439013	AT1G10455.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51970.1); Has 30 Blast hits to 28 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10455.1p  transcript_id AT1G10455.1  protein_id AT1G10455.1p  transcript_id AT1G10455.1  
At1g10460	chr1:003439578	0.0	C/3439578-3440231	AT1G10460.1 CDS  gene_syn GERMIN-LIKE PROTEIN 7, GLP7, T10O24.6  gene GLP7  function germin-like protein (GLP7)  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product GLP7 (GERMIN-LIKE PROTEIN 7); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 7 (GLP7); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT5G38960.1); Has 859 Blast hits to 858 proteins in 84 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 32; Plants - 806; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G10460.1p  transcript_id AT1G10460.1  protein_id AT1G10460.1p  transcript_id AT1G10460.1  
At1g10470	chr1:003442624	0.0	C/3442624-3442999,3443099-3443169,3443252-3443329,3443417-3443493,3443582-3443759	AT1G10470.1 CDS  gene_syn ARR4, ATRR1, IBC7, INDUCED BY CYTOKININ 7, MEE7, RESPONCE REGULATOR 1, RESPONSE REGULATOR 4, T10O24.8, T10O24_8, maternal effect embryo arrest 7  gene ARR4  function Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.  go_component nucleus|GO:0005634|11691995|IDA  go_component nucleus|GO:0005634|18642946|IDA  go_component cytoplasm|GO:0005737|11691995|IDA  go_component cytoplasm|GO:0005737|18642946|IDA  go_process response to stress|GO:0006950|9607306|TAS  go_process circadian rhythm|GO:0007623|16326927|IMP  go_process response to cytokinin stimulus|GO:0009735|16407152|IEP  go_process response to cytokinin stimulus|GO:0009735|9634588|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18065689|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_process red or far red light signaling pathway|GO:0010017|11691995|IMP  go_process response to red light|GO:0010114|14973166|IMP  go_process regulation of circadian rhythm|GO:0042752|16326927|IGI  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156|9607306|TAS  go_function two-component response regulator activity|GO:0000156||ISS  go_function protein binding|GO:0005515|11691995|IPI  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR4 (RESPONSE REGULATOR 4); protein binding / transcription regulator/ two-component response regulator  note RESPONSE REGULATOR 4 (ARR4); FUNCTIONS IN: protein binding, transcription regulator activity, two-component response regulator activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR3 (RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator (TAIR:AT1G59940.1); Has 34704 Blast hits to 34217 proteins in 1583 species: Archae - 191; Bacteria - 28777; Metazoa - 34; Fungi - 412; Plants - 741; Viruses - 7; Other Eukaryotes - 4542 (source: NCBI BLink).  protein_id AT1G10470.1p  transcript_id AT1G10470.1  protein_id AT1G10470.1p  transcript_id AT1G10470.1  
At1g10480	chr1:003449734	0.0	W/3449734-3450369	AT1G10480.1 CDS  gene_syn T10O24.9, T10O24_9, ZFP5, ZINC FINGER PROTEIN 5  gene ZFP5  function Encodes a zinc finger protein containing only a single zinc finger.  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP5 (ZINC FINGER PROTEIN 5); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER PROTEIN 5 (ZFP5); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP6 (ZINC FINGER PROTEIN 6); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G67030.1); Has 338 Blast hits to 338 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 333; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10480.1p  transcript_id AT1G10480.1  protein_id AT1G10480.1p  transcript_id AT1G10480.1  
At1g10490	chr1:003453589	0.0	W/3453589-3453693,3453782-3453873,3454113-3454284,3454366-3454488,3454568-3454741,3454854-3454964,3455044-3455177,3455263-3455356,3455555-3455653,3455738-3455874,3455997-3456094,3456583-3456706,3456801-3456888,3456969-3457068,3457148-3457200,3457424-3457600,3457684-3457721,3457789-3457882,3457960-3458139,3458233-3458347,3458444-3458513,3458643-3458790,3458988-3459116,3459247-3459372,3459526-3459591,3459686-3459925	AT1G10490.1 CDS  gene_syn T10O24.10, T10O24_10  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1726 (InterPro:IPR013562), Protein of unknown function DUF699, ATPase putative (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57940.1); Has 887 Blast hits to 850 proteins in 389 species: Archae - 76; Bacteria - 411; Metazoa - 160; Fungi - 89; Plants - 21; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G10490.1p  transcript_id AT1G10490.1  protein_id AT1G10490.1p  transcript_id AT1G10490.1  
At1g10500	chr1:003460160	0.0	C/3460160-3460302,3460690-3460908,3461160-3461340	AT1G10500.1 CDS  gene_syn ATCPISCA, T10O24.11, T10O24_11, chloroplast-localized IscA-like protein  gene ATCPISCA  function Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.  go_component chloroplast stroma|GO:0009570|15888686|IDA  go_process iron-sulfur cluster assembly|GO:0016226|15888686|IDA  go_function structural molecule activity|GO:0005198|15888686|IDA  product ATCPISCA (chloroplast-localized IscA-like protein); structural molecule  note chloroplast-localized IscA-like protein (ATCPISCA); FUNCTIONS IN: structural molecule activity; INVOLVED IN: iron-sulfur cluster assembly; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FeS cluster insertion, C-terminal, conserved site (InterPro:IPR017870), FeS cluster biogenesis (InterPro:IPR000361), FeS cluster insertion (InterPro:IPR016092); BEST Arabidopsis thaliana protein match is: hesB-like domain-containing protein (TAIR:AT5G03905.1); Has 7722 Blast hits to 7721 proteins in 1111 species: Archae - 25; Bacteria - 3549; Metazoa - 199; Fungi - 150; Plants - 92; Viruses - 0; Other Eukaryotes - 3707 (source: NCBI BLink).  protein_id AT1G10500.1p  transcript_id AT1G10500.1  protein_id AT1G10500.1p  transcript_id AT1G10500.1  
At1g10510	chr1:003461771	0.0	W/3461771-3461818,3461902-3462175,3462395-3462607,3462743-3462801,3462903-3463040,3463238-3463312,3463420-3463503,3463614-3463675,3463781-3463850,3464037-3464112,3464210-3464340,3464458-3464517,3464609-3464683,3464773-3464877,3464977-3465072,3465168-3465248,3465340-3465441,3465522-3465590	AT1G10510.1 CDS  gene_syn T10O24.12, T10O24_12, emb2004, embryo defective 2004  gene emb2004  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb2004 (embryo defective 2004)  note embryo defective 2004 (emb2004); INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding (TAIR:AT3G63130.1); Has 17671 Blast hits to 5431 proteins in 235 species: Archae - 0; Bacteria - 744; Metazoa - 8658; Fungi - 337; Plants - 531; Viruses - 0; Other Eukaryotes - 7401 (source: NCBI BLink).  protein_id AT1G10510.1p  transcript_id AT1G10510.1  protein_id AT1G10510.1p  transcript_id AT1G10510.1  
At1g10520	chr1:003465964	0.0	W/3465964-3466074,3466197-3466337,3466532-3466849,3466996-3467074,3467154-3467284,3467439-3467501,3467701-3467880,3467973-3468026,3468110-3468198,3468287-3468377,3468568-3468648,3468799-3468866,3468967-3469051,3469150-3469248	AT1G10520.1 CDS  gene_syn T10O24.13, T10O24_13  go_component intracellular|GO:0005622||IEA  go_process DNA replication|GO:0006260||IEA  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||ISS  product DNA polymerase lambda (POLL)  note DNA polymerase lambda (POLL); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, catalytic activity, nucleotidyltransferase activity; INVOLVED IN: DNA repair, DNA replication; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleotidyltransferase (InterPro:IPR002934), DNA-directed DNA polymerase, family X, beta-like (InterPro:IPR002008), DNA-directed DNA polymerase, family X, beta-like, N-terminal (InterPro:IPR010996), DNA-directed DNA polymerase, family X (InterPro:IPR002054), BRCT (InterPro:IPR001357); Has 1319 Blast hits to 1315 proteins in 297 species: Archae - 26; Bacteria - 320; Metazoa - 481; Fungi - 134; Plants - 17; Viruses - 7; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT1G10520.1p  transcript_id AT1G10520.1  protein_id AT1G10520.1p  transcript_id AT1G10520.1  
At1g10522	chr1:003470009	0.0	W/3470009-3470263,3470340-3470435,3471103-3471291	AT1G10522.1 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10522.1p  transcript_id AT1G10522.1  protein_id AT1G10522.1p  transcript_id AT1G10522.1  
At1g10522	chr1:003470009	0.0	W/3470009-3470263,3470340-3470435,3471103-3471291	AT1G10522.2 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10522.2p  transcript_id AT1G10522.2  protein_id AT1G10522.2p  transcript_id AT1G10522.2  
At1g10530	chr1:003471805	0.0	C/3471805-3471912,3472047-3472147,3472235-3472526	AT1G10530.1 CDS  gene_syn T10O24.15, T10O24_15  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60010.1); Has 75 Blast hits to 75 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10530.1p  transcript_id AT1G10530.1  protein_id AT1G10530.1p  transcript_id AT1G10530.1  
At1g10538	chr1:003474515	0.0	W/3474515-3474765	AT1G10538.1 pseudogenic_transcript  pseudo  function pseudogene of CPL4 (phosphoprotein phosphatase)  
At1g10540	chr1:003475024	0.0	C/3475024-3475242,3475318-3475478,3475578-3475655,3475737-3475828,3475941-3475999,3476081-3476167,3476258-3476357,3476424-3476614,3476692-3476751,3476821-3476896,3476987-3477087,3477188-3477364,3477447-3477544,3477636-3477756	AT1G10540.1 CDS  gene_syn T10O24.16, T10O24_16  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function transmembrane transporter activity|GO:0022857||ISS  product xanthine/uracil permease family protein  note xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil permease (InterPro:IPR006042), Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: xanthine/uracil permease family protein (TAIR:AT1G60030.1); Has 4911 Blast hits to 4895 proteins in 928 species: Archae - 37; Bacteria - 3513; Metazoa - 307; Fungi - 90; Plants - 294; Viruses - 1; Other Eukaryotes - 669 (source: NCBI BLink).  protein_id AT1G10540.1p  transcript_id AT1G10540.1  protein_id AT1G10540.1p  transcript_id AT1G10540.1  
At1g10550	chr1:003479257	0.0	C/3479257-3479665,3480157-3480365,3480490-3480590,3480744-3480957	AT1G10550.1 CDS  gene_syn T10O24.17, T10O24_17, XET, XTH33, XYLOGLUCAN ENDOTRANSGLYCOSYLASE, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33  gene XTH33  function Encodes a membrane-localized protein that is predicted to function during cell wall modification.Overexpression of XTH33 results in abnormal cell morphology. It s expression is under epigenetic control by ATX1.  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_component integral to plasma membrane|GO:0005887|19154201|IDA  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831|19154201|IMP  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTH33; hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XTH33; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall modification during multidimensional cell growth; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: EXGT-A3; hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT2G01850.1); Has 1279 Blast hits to 1273 proteins in 199 species: Archae - 0; Bacteria - 182; Metazoa - 0; Fungi - 236; Plants - 794; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G10550.1p  transcript_id AT1G10550.1  protein_id AT1G10550.1p  transcript_id AT1G10550.1  
At1g10560	chr1:003484613	0.0	W/3484613-3486706	AT1G10560.1 CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 18, ATPUB18, PLANT U-BOX 18, PUB18, T10O24.19, T10O24_19  gene PUB18  function Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567|14657406|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|14657406|IDA  product PUB18 (PLANT U-BOX 18); ubiquitin-protein ligase  note PLANT U-BOX 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT1G60190.1); Has 1797 Blast hits to 1627 proteins in 163 species: Archae - 0; Bacteria - 20; Metazoa - 232; Fungi - 228; Plants - 1107; Viruses - 3; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT1G10560.1p  transcript_id AT1G10560.1  protein_id AT1G10560.1p  transcript_id AT1G10560.1  
At1g10570	chr1:003487639	0.0	W/3487639-3487974,3488329-3488377,3488457-3488569,3488644-3488945,3489075-3489123,3489203-3489288,3489377-3489406,3489485-3489589,3489674-3489776,3490055-3490152,3490368-3490490,3490610-3490721,3490807-3490914,3491001-3491102	AT1G10570.1 CDS  gene_syn OTS2, OVERLY TOLERANT TO SALT 2, T10O24.20, T10O24_20, UB-LIKE PROTEASE 1C, ULP1C  gene OTS2  function Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.  go_component nucleus|GO:0005634|18849491|IDA  go_process proteolysis|GO:0006508||ISS  go_process response to salt stress|GO:0009651|18849491|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18849491|IGI  go_process protein desumoylation|GO:0016926|16740136|IDA  go_function cysteine-type peptidase activity|GO:0008234||ISS  go_function SUMO-specific protease activity|GO:0016929|16740136|IDA  product OTS2 (OVERLY TOLERANT TO SALT 2); SUMO-specific protease/ cysteine-type peptidase  note OVERLY TOLERANT TO SALT 2 (OTS2); FUNCTIONS IN: cysteine-type peptidase activity, SUMO-specific protease activity; INVOLVED IN: response to salt stress, proteolysis, protein desumoylation, vegetative to reproductive phase transition; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: ULP1D (UB-LIKE PROTEASE 1D); SUMO-specific protease/ cysteine-type peptidase (TAIR:AT1G60220.1); Has 939 Blast hits to 928 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 162; Plants - 111; Viruses - 3; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G10570.1p  transcript_id AT1G10570.1  protein_id AT1G10570.1p  transcript_id AT1G10570.1  
At1g10570	chr1:003487639	0.0	W/3487639-3487974,3488332-3488377,3488457-3488569,3488644-3488945,3489075-3489123,3489203-3489288,3489377-3489406,3489485-3489589,3489674-3489776,3490055-3490152,3490368-3490490,3490610-3490721,3490807-3490914,3491001-3491102	AT1G10570.2 CDS  gene_syn OTS2, OVERLY TOLERANT TO SALT 2, T10O24.20, T10O24_20, UB-LIKE PROTEASE 1C, ULP1C  gene OTS2  function Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.  go_component nucleus|GO:0005634|18849491|IDA  go_process proteolysis|GO:0006508||ISS  go_process response to salt stress|GO:0009651|18849491|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18849491|IGI  go_process protein desumoylation|GO:0016926|16740136|IDA  go_function cysteine-type peptidase activity|GO:0008234||ISS  go_function SUMO-specific protease activity|GO:0016929|16740136|IDA  product OTS2 (OVERLY TOLERANT TO SALT 2); SUMO-specific protease/ cysteine-type peptidase  note OVERLY TOLERANT TO SALT 2 (OTS2); FUNCTIONS IN: cysteine-type peptidase activity, SUMO-specific protease activity; INVOLVED IN: response to salt stress, proteolysis, protein desumoylation, vegetative to reproductive phase transition; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: ULP1D (UB-LIKE PROTEASE 1D); SUMO-specific protease/ cysteine-type peptidase (TAIR:AT1G60220.1); Has 936 Blast hits to 925 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 544; Fungi - 162; Plants - 111; Viruses - 3; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G10570.2p  transcript_id AT1G10570.2  protein_id AT1G10570.2p  transcript_id AT1G10570.2  
At1g10580	chr1:003491560	0.0	C/3491560-3491566,3491951-3493665	AT1G10580.1 CDS  gene_syn T10O24.21, T10O24_21  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G54520.1); Has 48476 Blast hits to 23700 proteins in 723 species: Archae - 63; Bacteria - 5525; Metazoa - 21675; Fungi - 8965; Plants - 4026; Viruses - 24; Other Eukaryotes - 8198 (source: NCBI BLink).  protein_id AT1G10580.1p  transcript_id AT1G10580.1  protein_id AT1G10580.1p  transcript_id AT1G10580.1  
At1g10585	chr1:003494115	0.0	C/3494115-3494204,3494296-3494613,3494967-3495104	AT1G10585.1 CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT1G10586.1); Has 43 Blast hits to 43 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10585.1p  transcript_id AT1G10585.1  protein_id AT1G10585.1p  transcript_id AT1G10585.1  
At1g10586	chr1:003497131	0.0	C/3497131-3497199,3497338-3497655,3499259-3499396	AT1G10586.1 CDS  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription regulator activity|GO:0030528||IEA  product transcription regulator  note transcription regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G10585.1); Has 46 Blast hits to 46 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10586.1p  transcript_id AT1G10586.1  protein_id AT1G10586.1p  transcript_id AT1G10586.1  
At1g10586	chr1:003497131	0.0	C/3497131-3497199,3497338-3497655,3499264-3499278	AT1G10586.2 CDS  product unknown protein  note BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G10585.1); Has 32 Blast hits to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10586.2p  transcript_id AT1G10586.2  protein_id AT1G10586.2p  transcript_id AT1G10586.2  
At1g10588	chr1:003501276	0.0	W/3501276-3501360,3501468-3501655	AT1G10588.1 CDS  function Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-regulated family protein (TAIR:AT2G39540.1); Has 251 Blast hits to 251 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10588.1p  transcript_id AT1G10588.1  protein_id AT1G10588.1p  transcript_id AT1G10588.1  
At1g10588	chr1:003501276	0.0	W/3501276-3501360,3501471-3501655	AT1G10588.2 CDS  function Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: gibberellin-regulated family protein (TAIR:AT2G39540.1); Has 251 Blast hits to 251 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10588.2p  transcript_id AT1G10588.2  protein_id AT1G10588.2p  transcript_id AT1G10588.2  
At1g10590	chr1:003502324	0.0	C/3502324-3502514,3502763-3502991	AT1G10590.1 CDS  gene_syn F20B24.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT1G23750.1); Has 139 Blast hits to 139 proteins in 35 species: Archae - 30; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G10590.1p  transcript_id AT1G10590.1  protein_id AT1G10590.1p  transcript_id AT1G10590.1  
At1g10590	chr1:003502324	0.0	C/3502324-3502514,3502763-3502991	AT1G10590.2 CDS  gene_syn F20B24.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT1G23750.1); Has 139 Blast hits to 139 proteins in 35 species: Archae - 30; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G10590.2p  transcript_id AT1G10590.2  protein_id AT1G10590.2p  transcript_id AT1G10590.2  
At1g10590	chr1:003502324	0.0	C/3502324-3502514,3502763-3503033	AT1G10590.3 CDS  gene_syn F20B24.1  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT1G23750.1); Has 139 Blast hits to 139 proteins in 35 species: Archae - 30; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G10590.3p  transcript_id AT1G10590.3  protein_id AT1G10590.3p  transcript_id AT1G10590.3  
At1g10600	chr1:003503765	0.0	W/3503765-3503917,3504024-3504113,3504426-3504488,3504569-3504643,3504737-3504799,3504882-3504934,3505016-3505190	AT1G10600.1 CDS  gene_syn F20B24.2  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16144.1); Has 753 Blast hits to 752 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 359; Fungi - 199; Plants - 115; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT1G10600.1p  transcript_id AT1G10600.1  protein_id AT1G10600.1p  transcript_id AT1G10600.1  
At1g10600	chr1:003503765	0.0	W/3503765-3503917,3504024-3504113,3504426-3504488,3504569-3504643,3504737-3504799,3504882-3504934,3505019-3505190	AT1G10600.3 CDS  gene_syn F20B24.2  go_component chloroplast|GO:0009507||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16144.1); Has 771 Blast hits to 770 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 366; Fungi - 201; Plants - 115; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G10600.3p  transcript_id AT1G10600.3  protein_id AT1G10600.3p  transcript_id AT1G10600.3  
At1g10600	chr1:003503907	0.0	W/3503907-3503917,3504024-3504113,3504359-3504392,3504569-3504643,3504737-3504799,3504882-3504934,3505016-3505190	AT1G10600.2 CDS  gene_syn F20B24.2  go_component mitochondrion|GO:0005739||IEA  go_process ubiquitin-dependent protein catabolic process|GO:0006511||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16144.1); Has 601 Blast hits to 601 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 286; Fungi - 140; Plants - 102; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G10600.2p  transcript_id AT1G10600.2  protein_id AT1G10600.2p  transcript_id AT1G10600.2  
At1g10610	chr1:003506463	0.0	W/3506463-3506572,3507032-3507229,3507309-3507372,3507450-3507518,3507599-3508033,3508137-3508337,3508416-3508592,3508681-3508752	AT1G10610.1 CDS  gene_syn F20B24.5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: AMS (ABORTED MICROSPORES); DNA binding / transcription factor (TAIR:AT2G16910.1); Has 798 Blast hits to 792 proteins in 87 species: Archae - 0; Bacteria - 6; Metazoa - 60; Fungi - 5; Plants - 716; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G10610.1p  transcript_id AT1G10610.1  protein_id AT1G10610.1p  transcript_id AT1G10610.1  
At1g10620	chr1:003509001	0.0	C/3509001-3509243,3509341-3509502,3509599-3509746,3509833-3509909,3510034-3510104,3510231-3510317,3510479-3510919,3511048-3511975	AT1G10620.1 CDS  gene_syn F20B24.6, F20B24_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G23540.1); Has 206791 Blast hits to 142577 proteins in 4159 species: Archae - 446; Bacteria - 28571; Metazoa - 86558; Fungi - 22835; Plants - 31615; Viruses - 4108; Other Eukaryotes - 32658 (source: NCBI BLink).  protein_id AT1G10620.1p  transcript_id AT1G10620.1  protein_id AT1G10620.1p  transcript_id AT1G10620.1  
At1g10630	chr1:003513189	0.0	C/3513189-3513194,3513351-3513432,3513525-3513643,3513730-3513849,3513935-3514005,3514083-3514230	AT1G10630.1 CDS  gene_syn ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F, ATARFA1F, F20B24.7, F20B24_7  gene ATARFA1F  function A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|15723828|TAS  go_function GTP binding|GO:0005525|15723828|ISS  go_function GTP binding|GO:0005525|15723828|TAS  go_function phospholipase activator activity|GO:0016004|15723828|TAS  product ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F); GTP binding / copper ion binding / phospholipase activator/ protein binding  note ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F (ATARFA1F); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding, copper ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ARF1A1C; GTP binding / phospholipase activator/ protein binding (TAIR:AT2G47170.1); Has 12055 Blast hits to 12038 proteins in 420 species: Archae - 12; Bacteria - 43; Metazoa - 6622; Fungi - 1333; Plants - 1251; Viruses - 3; Other Eukaryotes - 2791 (source: NCBI BLink).  protein_id AT1G10630.1p  transcript_id AT1G10630.1  protein_id AT1G10630.1p  transcript_id AT1G10630.1  
At1g10640	chr1:003515478	0.0	C/3515478-3516061,3516140-3516347,3516417-3516461,3516550-3516771,3516848-3516979,3517400-3517807	AT1G10640.1 CDS  gene_syn F20B24.8, F20B24_8  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase  note polygalacturonase; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G60590.1); Has 2429 Blast hits to 2421 proteins in 307 species: Archae - 2; Bacteria - 474; Metazoa - 7; Fungi - 989; Plants - 878; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G10640.1p  transcript_id AT1G10640.1  protein_id AT1G10640.1p  transcript_id AT1G10640.1  
At1g10650	chr1:003524122	0.0	C/3524122-3524661,3524749-3525060	AT1G10650.2 CDS  gene_syn F20B24.9, F20B24_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G60610.3); Has 903 Blast hits to 903 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 457; Fungi - 2; Plants - 224; Viruses - 96; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G10650.2p  transcript_id AT1G10650.2  protein_id AT1G10650.2p  transcript_id AT1G10650.2  
At1g10650	chr1:003524122	0.0	C/3524122-3524661,3524749-3525119,3525210-3525318	AT1G10650.1 CDS  gene_syn F20B24.9, F20B24_9  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G60610.3); Has 921 Blast hits to 921 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 457; Fungi - 2; Plants - 223; Viruses - 96; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G10650.1p  transcript_id AT1G10650.1  protein_id AT1G10650.1p  transcript_id AT1G10650.1  
At1g10652	chr1:003527709	0.0	W/3527709-3527831	AT1G10652.1 CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note unknown protein; LOCATED IN: mitochondrion; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G10652.1p  transcript_id AT1G10652.1  protein_id AT1G10652.1p  transcript_id AT1G10652.1  
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531193-3531342,3531479-3531522	AT1G10657.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 57 Blast hits to 57 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10657.1p  transcript_id AT1G10657.1  protein_id AT1G10657.1p  transcript_id AT1G10657.1  
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531265-3531307,3531479-3531572	AT1G10657.4 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 104 Blast hits to 104 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10657.4p  transcript_id AT1G10657.4  protein_id AT1G10657.4p  transcript_id AT1G10657.4  
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531265-3531342,3531479-3531522	AT1G10657.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 104 Blast hits to 104 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10657.2p  transcript_id AT1G10657.2  protein_id AT1G10657.2p  transcript_id AT1G10657.2  
At1g10657	chr1:003530652	0.0	W/3530652-3530729,3530822-3530927,3531265-3531383	AT1G10657.3 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55240.1); Has 106 Blast hits to 106 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10657.3p  transcript_id AT1G10657.3  protein_id AT1G10657.3p  transcript_id AT1G10657.3  
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.1 CDS  gene_syn F20B24.10, F20B24_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 90 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 1; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10660.1p  transcript_id AT1G10660.1  protein_id AT1G10660.1p  transcript_id AT1G10660.1  
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.2 CDS  gene_syn F20B24.10, F20B24_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 90 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 1; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10660.2p  transcript_id AT1G10660.2  protein_id AT1G10660.2p  transcript_id AT1G10660.2  
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.3 CDS  gene_syn F20B24.10, F20B24_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 90 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 1; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10660.3p  transcript_id AT1G10660.3  protein_id AT1G10660.3p  transcript_id AT1G10660.3  
At1g10660	chr1:003533009	0.0	W/3533009-3533322,3533408-3533441,3533523-3533747,3533850-3533933,3534081-3534146,3534236-3534327,3534524-3534571,3534682-3534781	AT1G10660.4 CDS  gene_syn F20B24.10, F20B24_10  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 90 Blast hits to 89 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 1; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10660.4p  transcript_id AT1G10660.4  protein_id AT1G10660.4p  transcript_id AT1G10660.4  
At1g10670	chr1:003535787	0.0	W/3535787-3535885,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.1 CDS  gene_syn ACLA-1, ATP-CITRATE LYASE A-1, F20B24.11, F20B24_11  gene ACLA-1  function One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.  go_component cytosol|GO:0005829|12376641|IDA  go_component citrate lyase complex|GO:0009346|12376641|IDA  go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS  go_process fatty acid biosynthetic process|GO:0006633|15608338|IMP  go_process aging|GO:0007568|15608338|IMP  go_process positive regulation of flower development|GO:0009911|15608338|IMP  go_process wax biosynthetic process|GO:0010025|15608338|IMP  go_process chlorophyll biosynthetic process|GO:0015995|15608338|IMP  go_process carotenoid biosynthetic process|GO:0016117|15608338|IMP  go_process starch biosynthetic process|GO:0019252|15608338|IMP  go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|15608338|IMP  go_process positive regulation of cell size|GO:0045793|15608338|IMP  go_process regulation of embryonic development|GO:0045995|15608338|IMP  go_process leaf development|GO:0048366|15608338|IMP  go_function ATP citrate synthase activity|GO:0003878|12376641|IDA  product ACLA-1; ATP citrate synthase  note ACLA-1; FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: in 12 processes; LOCATED IN: cytosol, citrate lyase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ACLA-2; ATP citrate synthase (TAIR:AT1G60810.1); Has 4147 Blast hits to 4146 proteins in 995 species: Archae - 78; Bacteria - 1932; Metazoa - 335; Fungi - 130; Plants - 62; Viruses - 0; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT1G10670.1p  transcript_id AT1G10670.1  protein_id AT1G10670.1p  transcript_id AT1G10670.1  
At1g10670	chr1:003535787	0.0	W/3535787-3535885,3536131-3536307,3536387-3536548,3536650-3536730,3536829-3536880,3536974-3537088,3537159-3537240,3537337-3537432,3537516-3537617,3537695-3537811,3537910-3538098	AT1G10670.2 CDS  gene_syn ACLA-1, ATP-CITRATE LYASE A-1, F20B24.11, F20B24_11  gene ACLA-1  function One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.  go_component cytosol|GO:0005829|12376641|IDA  go_component citrate lyase complex|GO:0009346|12376641|IDA  go_process acetyl-CoA biosynthetic process|GO:0006085|12376641|TAS  go_process fatty acid biosynthetic process|GO:0006633|15608338|IMP  go_process aging|GO:0007568|15608338|IMP  go_process positive regulation of flower development|GO:0009911|15608338|IMP  go_process wax biosynthetic process|GO:0010025|15608338|IMP  go_process chlorophyll biosynthetic process|GO:0015995|15608338|IMP  go_process carotenoid biosynthetic process|GO:0016117|15608338|IMP  go_process starch biosynthetic process|GO:0019252|15608338|IMP  go_process anthocyanin accumulation in tissues in response to UV light|GO:0043481|15608338|IMP  go_process positive regulation of cell size|GO:0045793|15608338|IMP  go_process regulation of embryonic development|GO:0045995|15608338|IMP  go_process leaf development|GO:0048366|15608338|IMP  go_function ATP citrate synthase activity|GO:0003878|12376641|IDA  product ACLA-1; ATP citrate synthase  note ACLA-1; FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: in 12 processes; LOCATED IN: cytosol, citrate lyase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ACLA-2; ATP citrate synthase (TAIR:AT1G60810.1); Has 4147 Blast hits to 4146 proteins in 995 species: Archae - 78; Bacteria - 1932; Metazoa - 335; Fungi - 130; Plants - 62; Viruses - 0; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT1G10670.2p  transcript_id AT1G10670.2  protein_id AT1G10670.2p  transcript_id AT1G10670.2  
At1g10680	chr1:003538470	0.0	C/3538470-3538679,3538801-3539141,3539280-3539692,3539772-3540019,3540107-3540348,3540447-3540832,3540925-3541292,3541374-3541902,3541989-3542248,3542337-3542537,3542745-3542920,3543003-3543057,3543528-3543782	AT1G10680.1 CDS  gene_syn F20B24.12, F20B24_12, P-GLYCOPROTEIN 10, PGP10  gene PGP10  go_process transport|GO:0006810||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP10 (P-GLYCOPROTEIN 10); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 10 (PGP10); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP2 (P-GLYCOPROTEIN 2); ATPase, coupled to transmembrane movement of substances (TAIR:AT4G25960.1); Has 502951 Blast hits to 234834 proteins in 2684 species: Archae - 8786; Bacteria - 336980; Metazoa - 15884; Fungi - 8408; Plants - 4543; Viruses - 30; Other Eukaryotes - 128320 (source: NCBI BLink).  protein_id AT1G10680.1p  transcript_id AT1G10680.1  protein_id AT1G10680.1p  transcript_id AT1G10680.1  
At1g10682	chr1:003544991	0.0	C/3544991-3545471	AT1G10682.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G10682.1  
At1g10690	chr1:003550236	0.0	C/3550236-3550568	AT1G10690.1 CDS  gene_syn T16B5.17, T16B5_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, embryo; EXPRESSED DURING: E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10690.1p  transcript_id AT1G10690.1  protein_id AT1G10690.1p  transcript_id AT1G10690.1  
At1g10700	chr1:003554157	0.0	W/3554157-3554548,3554821-3555136,3555227-3555322,3555421-3555489,3555722-3555850,3555934-3556033,3556141-3556274	AT1G10700.1 CDS  gene_syn T16B5.16  go_component chloroplast|GO:0009507||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process ribonucleoside monophosphate biosynthetic process|GO:0009156||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA  go_process nucleotide biosynthetic process|GO:0009165||ISS  go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS  product ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3)  note ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4) (TAIR:AT2G42910.1); Has 6424 Blast hits to 6423 proteins in 1522 species: Archae - 142; Bacteria - 3196; Metazoa - 415; Fungi - 221; Plants - 120; Viruses - 5; Other Eukaryotes - 2325 (source: NCBI BLink).  protein_id AT1G10700.1p  transcript_id AT1G10700.1  protein_id AT1G10700.1p  transcript_id AT1G10700.1  
At1g10705	chr1:003557114	0.0	W/3557114-3557457	AT1G10705.1 pseudogenic_transcript  pseudo  function Encodes a Maternally expressed gene (MEG) family protein [pseudogene]  
At1g10710	chr1:003558423	0.0	W/3558423-3558695,3558864-3558980,3559150-3559215,3559353-3559462,3559542-3559700,3559781-3559965,3560057-3560109,3560197-3560224,3560349-3560390,3561296-3561495	AT1G10710.1 CDS  gene_syn T16B5.15  function Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1); Has 15 Blast hits to 15 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10710.1p  transcript_id AT1G10710.1  protein_id AT1G10710.1p  transcript_id AT1G10710.1  
At1g10710	chr1:003558423	0.0	W/3558423-3558695,3558864-3558980,3559150-3559215,3559353-3559462,3559542-3559700,3559781-3559965,3560057-3560109,3560197-3560224,3560349-3560407	AT1G10710.2 CDS  gene_syn T16B5.15  function Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 11 Blast hits to 11 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10710.2p  transcript_id AT1G10710.2  protein_id AT1G10710.2p  transcript_id AT1G10710.2  
At1g10717	chr1:003562180	0.0	W/3562180-3562243,3562346-3562554	AT1G10717.1 CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27135.1); Has 14 Blast hits to 14 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10717.1p  transcript_id AT1G10717.1  protein_id AT1G10717.1p  transcript_id AT1G10717.1  
At1g10720	chr1:003562964	0.0	W/3562964-3563579,3563680-3563867,3563961-3564446	AT1G10720.1 CDS  gene_syn T16B5.14, T16B5_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1); Has 1529 Blast hits to 1401 proteins in 161 species: Archae - 0; Bacteria - 12; Metazoa - 829; Fungi - 160; Plants - 169; Viruses - 21; Other Eukaryotes - 338 (source: NCBI BLink).  protein_id AT1G10720.1p  transcript_id AT1G10720.1  protein_id AT1G10720.1p  transcript_id AT1G10720.1  
At1g10730	chr1:003565463	0.0	W/3565463-3565591,3565732-3565878,3565985-3566047,3566158-3566334,3566409-3566512,3566605-3566712,3566837-3566933,3567028-3567125,3567226-3567367,3567443-3567565,3567681-3567779	AT1G10730.1 CDS  gene_syn T16B5.13, T16B5_13  go_component clathrin adaptor complex|GO:0030131||IEA  go_process transport|GO:0006810||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function protein binding|GO:0005515||IEA  go_component clathrin vesicle coat|GO:0030125||ISS  go_process intracellular protein transport|GO:0006886||ISS  product clathrin adaptor complexes medium subunit family protein  note clathrin adaptor complexes medium subunit family protein; FUNCTIONS IN: protein binding; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: HAP13 (HAPLESS 13); protein binding (TAIR:AT1G60780.1); Has 1636 Blast hits to 1593 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 926; Fungi - 314; Plants - 104; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT1G10730.1p  transcript_id AT1G10730.1  protein_id AT1G10730.1p  transcript_id AT1G10730.1  
At1g10740	chr1:003568343	0.0	C/3568343-3568547,3568616-3568747,3568829-3569266,3569450-3569553,3569641-3569741,3569837-3569940,3570041-3570135,3570224-3570466	AT1G10740.1 CDS  gene_syn T16B5.12, T16B5_12  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  product unknown protein  note unknown protein; INVOLVED IN: glycerol biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23330.1); Has 369 Blast hits to 369 proteins in 87 species: Archae - 0; Bacteria - 252; Metazoa - 1; Fungi - 4; Plants - 26; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G10740.1p  transcript_id AT1G10740.1  protein_id AT1G10740.1p  transcript_id AT1G10740.1  
At1g10740	chr1:003568612	0.0	C/3568612-3568747,3568829-3569266,3569450-3569553,3569641-3569741,3569837-3569940,3570041-3570135,3570224-3570466	AT1G10740.2 CDS  gene_syn T16B5.12, T16B5_12  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23330.1); Has 364 Blast hits to 364 proteins in 87 species: Archae - 0; Bacteria - 252; Metazoa - 1; Fungi - 4; Plants - 26; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G10740.2p  transcript_id AT1G10740.2  protein_id AT1G10740.2p  transcript_id AT1G10740.2  
At1g10745	chr1:003572710	0.0	W/3572710-3572770,3572879-3573066	AT1G10745.1 CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10747.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10745.1p  transcript_id AT1G10745.1  protein_id AT1G10745.1p  transcript_id AT1G10745.1  
At1g10747	chr1:003574312	0.0	W/3574312-3574375,3574449-3574636	AT1G10747.1 CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10747.1p  transcript_id AT1G10747.1  protein_id AT1G10747.1p  transcript_id AT1G10747.1  
At1g10750	chr1:003574986	0.0	C/3574986-3575363,3576020-3576166,3576289-3576342,3576445-3576609,3577327-3577536,3577625-3577711,3577948-3578310	AT1G10750.1 CDS  gene_syn T16B5.11, T16B5_11  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70550.2); Has 445 Blast hits to 415 proteins in 19 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 10; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10750.1p  transcript_id AT1G10750.1  protein_id AT1G10750.1p  transcript_id AT1G10750.1  
At1g10760	chr1:003581210	0.0	C/3581210-3581414,3581516-3581631,3581736-3581828,3581907-3582080,3582158-3582256,3582602-3582712,3583032-3583157,3583338-3583470,3583624-3583727,3583812-3584025,3584145-3584251,3584348-3584524,3584752-3584835,3584978-3585130,3585228-3585287,3585382-3585444,3585523-3585585,3585724-3585909,3585982-3586071,3586343-3586505,3586687-3586821,3587072-3587160,3587252-3587392,3587489-3587584,3587702-3587809,3587915-3588310,3588730-3588883,3588983-3589074,3589193-3589271,3589365-3589465,3589553-3589594,3589798-3590043	AT1G10760.1 CDS  gene_syn GWD, GWD1, SEX1, SOP, SOP1, STARCH EXCESS 1, T16B5.10, T16B5_10  gene SEX1  function Encodes an & 945;-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process starch catabolic process|GO:0005983|11487701|IMP  go_process circadian rhythm|GO:0007623|16297066|IEP  go_process response to symbiotic fungus|GO:0009610|15710607|IEP  go_process response to symbiotic fungus|GO:0009610|17397506|IEP  go_process cold acclimation|GO:0009631|15894744|IMP  go_process response to trehalose stimulus|GO:0010353|17031512|IEP  go_function alpha-glucan, water dikinase activity|GO:0050521|11487701|IMP  go_function alpha-glucan, water dikinase activity|GO:0050521|15894744|TAS  go_function alpha-glucan, water dikinase activity|GO:0050521|16914145|IMP  product SEX1 (STARCH EXCESS 1); alpha-glucan, water dikinase  note STARCH EXCESS 1 (SEX1); FUNCTIONS IN: alpha-glucan, water dikinase activity; INVOLVED IN: cold acclimation, response to symbiotic fungus, response to trehalose stimulus, circadian rhythm, starch catabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), PEP-utilising enzyme, mobile region, conserved site (InterPro:IPR018274), PEP-utilizing enzyme (InterPro:IPR000121); BEST Arabidopsis thaliana protein match is: PWD (PHOSPHOGLUCAN, WATER DIKINASE); ATP binding / kinase (TAIR:AT4G24450.1); Has 1483 Blast hits to 1470 proteins in 615 species: Archae - 116; Bacteria - 1049; Metazoa - 19; Fungi - 7; Plants - 111; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT1G10760.1p  transcript_id AT1G10760.1  protein_id AT1G10760.1p  transcript_id AT1G10760.1  
At1g10770	chr1:003591859	0.0	C/3591859-3592362	AT1G10770.1 CDS  gene_syn T16B5.9  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G60760.1); Has 92 Blast hits to 92 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10770.1p  transcript_id AT1G10770.1  protein_id AT1G10770.1p  transcript_id AT1G10770.1  
At1g10780	chr1:003592875	0.0	C/3592875-3593111,3593202-3593479,3593569-3594310	AT1G10780.1 CDS  gene_syn T16B5.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67190.1); Has 144 Blast hits to 143 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G10780.1p  transcript_id AT1G10780.1  protein_id AT1G10780.1p  transcript_id AT1G10780.1  
At1g10790	chr1:003596360	0.0	W/3596360-3596603,3596990-3597102,3597194-3597847	AT1G10790.1 CDS  gene_syn T16B5.7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.2); Has 40 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10790.1p  transcript_id AT1G10790.1  protein_id AT1G10790.1p  transcript_id AT1G10790.1  
At1g10800	chr1:003598158	0.0	C/3598158-3598514	AT1G10800.1 CDS  gene_syn T16B5.6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10800.1p  transcript_id AT1G10800.1  protein_id AT1G10800.1p  transcript_id AT1G10800.1  
At1g10810	chr1:003599369	0.0	W/3599369-3599590,3599677-3599877,3599962-3600134,3600224-3600326,3600422-3600757	AT1G10810.1 CDS  gene_syn T16B5.5, T16B5_5  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_function aldo-keto reductase activity|GO:0004033||ISS  product aldo/keto reductase family protein  note aldo/keto reductase family protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: aldo/keto reductase family protein (TAIR:AT1G60730.1); Has 17462 Blast hits to 17444 proteins in 1449 species: Archae - 334; Bacteria - 9970; Metazoa - 1282; Fungi - 1370; Plants - 705; Viruses - 0; Other Eukaryotes - 3801 (source: NCBI BLink).  protein_id AT1G10810.1p  transcript_id AT1G10810.1  protein_id AT1G10810.1p  transcript_id AT1G10810.1  
At1g10820	chr1:003601437	0.0	C/3601437-3601493,3601713-3601809,3601916-3601977,3602168-3602250,3602354-3602459,3602999-3603055,3603922-3604021,3604436-3604541,3604620-3604650	AT1G10820.1 CDS  gene_syn T16B5.4, T16B5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60670.2); Has 91 Blast hits to 91 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G10820.1p  transcript_id AT1G10820.1  protein_id AT1G10820.1p  transcript_id AT1G10820.1  
At1g10820	chr1:003601437	0.0	C/3601437-3601493,3601713-3601809,3601916-3601977,3602168-3602250,3602354-3602459,3602999-3603055,3603922-3604021,3604436-3604650	AT1G10820.2 CDS  gene_syn T16B5.4, T16B5_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60670.2); Has 91 Blast hits to 91 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G10820.2p  transcript_id AT1G10820.2  protein_id AT1G10820.2p  transcript_id AT1G10820.2  
At1g10830	chr1:003605736	0.0	C/3605736-3606071,3606501-3606710,3606815-3606961,3607039-3607449	AT1G10830.1 CDS  gene_syn T16B5.3, T16B5_3  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sodium symporter-related  note sodium symporter-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915); Has 324 Blast hits to 324 proteins in 78 species: Archae - 0; Bacteria - 132; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT1G10830.1p  transcript_id AT1G10830.1  protein_id AT1G10830.1p  transcript_id AT1G10830.1  
At1g10830	chr1:003606411	0.0	C/3606411-3606710,3606815-3606961,3607039-3607449	AT1G10830.2 CDS  gene_syn T16B5.3, T16B5_3  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sodium symporter-related  note sodium symporter-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 254 Blast hits to 254 proteins in 59 species: Archae - 0; Bacteria - 98; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).  protein_id AT1G10830.2p  transcript_id AT1G10830.2  protein_id AT1G10830.2p  transcript_id AT1G10830.2  
At1g10840	chr1:003607885	0.0	C/3607885-3607942,3608023-3608175,3608361-3608428,3608514-3608615,3608706-3608777,3608914-3608962,3609048-3609181,3609455-3609521,3609608-3609657	AT1G10840.2 CDS  gene_syn T16B5.2, T16B5_2, TIF3H1, TRANSLATION INITIATION FACTOR 3 SUBUNIT H1  gene TIF3H1  function Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).  go_component eukaryotic translation initiation factor 3 complex|GO:0005852||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product TIF3H1; translation initiation factor  note TIF3H1; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 283 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 68; Plants - 34; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G10840.2p  transcript_id AT1G10840.2  protein_id AT1G10840.2p  transcript_id AT1G10840.2  
At1g10840	chr1:003607885	0.0	C/3607885-3607942,3608023-3608175,3608361-3608428,3608514-3608615,3608706-3608777,3608914-3608962,3609048-3609181,3609455-3609521,3609608-3609711,3609811-3609927,3610094-3610173,3610290-3610299	AT1G10840.1 CDS  gene_syn T16B5.2, T16B5_2, TIF3H1, TRANSLATION INITIATION FACTOR 3 SUBUNIT H1  gene TIF3H1  function Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).  go_component eukaryotic translation initiation factor 3 complex|GO:0005852||ISS  go_process translational initiation|GO:0006413||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product TIF3H1; translation initiation factor  note TIF3H1; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); Has 945 Blast hits to 944 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 428; Fungi - 238; Plants - 146; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G10840.1p  transcript_id AT1G10840.1  protein_id AT1G10840.1p  transcript_id AT1G10840.1  
At1g10850	chr1:003612228	0.0	W/3612228-3613557,3613682-3614343	AT1G10850.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / protein binding / protein kinase/ protein serine/threonine kinase  note ATP binding / protein binding / protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT1G60630.1); Has 95768 Blast hits to 76205 proteins in 2010 species: Archae - 39; Bacteria - 7177; Metazoa - 31531; Fungi - 5598; Plants - 38023; Viruses - 254; Other Eukaryotes - 13146 (source: NCBI BLink).  protein_id AT1G10850.1p  transcript_id AT1G10850.1  protein_id AT1G10850.1p  transcript_id AT1G10850.1  
At1g10865	chr1:003614789	0.0	C/3614789-3614830,3615037-3615141,3615240-3615308	AT1G10865.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 170 Blast hits to 170 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 61; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G10865.1p  transcript_id AT1G10865.1  protein_id AT1G10865.1p  transcript_id AT1G10865.1  
At1g10865	chr1:003614821	0.0	C/3614821-3614826,3615037-3615141,3615240-3615308	AT1G10865.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 64 Blast hits to 64 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 7; Plants - 21; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G10865.2p  transcript_id AT1G10865.2  protein_id AT1G10865.2p  transcript_id AT1G10865.2  
At1g10870	chr1:003616905	0.0	C/3616905-3617019,3617226-3617671,3617839-3617929,3618077-3618198,3618526-3618786,3618873-3618959,3619189-3619404,3619911-3620036,3620358-3620564,3621001-3621042,3621147-3621242,3621332-3621379,3621751-3621816,3622003-3622047,3622400-3622462,3622763-3622833,3622920-3623020,3623362-3623438,3623565-3623612	AT1G10870.1 CDS  gene_syn AGD4, ARF-GAP domain 4, T19D16.20, T19D16_20  gene AGD4  function A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3.  go_component cytoplasm|GO:0005737||IEA  go_process regulation of ARF GTPase activity|GO:0032312||IEA  go_function protein binding|GO:0005515||IEA  go_function ARF GTPase activator activity|GO:0008060||IEA  go_function zinc ion binding|GO:0008270||IEA  product AGD4 (ARF-GAP domain 4); ARF GTPase activator/ protein binding / zinc ion binding  note ARF-GAP domain 4 (AGD4); FUNCTIONS IN: protein binding, ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: AGD2 (ARF-GAP DOMAIN 2); ARF GTPase activator/ protein binding / zinc ion binding (TAIR:AT1G60860.1); Has 19149 Blast hits to 12143 proteins in 429 species: Archae - 41; Bacteria - 1055; Metazoa - 10593; Fungi - 1494; Plants - 727; Viruses - 251; Other Eukaryotes - 4988 (source: NCBI BLink).  protein_id AT1G10870.1p  transcript_id AT1G10870.1  protein_id AT1G10870.1p  transcript_id AT1G10870.1  
At1g10880	chr1:003624035	0.0	C/3624035-3624253,3624334-3624504,3624651-3624776,3624877-3625068,3625169-3625348,3625835-3626380,3626500-3627021	AT1G10880.1 CDS  gene_syn T19D16.28, T19D16_28  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11730.1); Has 415 Blast hits to 411 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 7; Fungi - 4; Plants - 310; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G10880.1p  transcript_id AT1G10880.1  protein_id AT1G10880.1p  transcript_id AT1G10880.1  
At1g10890	chr1:003628081	0.0	W/3628081-3628229,3629098-3629304,3629845-3630064,3630255-3630545	AT1G10890.1 CDS  gene_syn T19D16.19, T19D16_19  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 124670 Blast hits to 55842 proteins in 2000 species: Archae - 645; Bacteria - 12681; Metazoa - 61376; Fungi - 8660; Plants - 4059; Viruses - 685; Other Eukaryotes - 36564 (source: NCBI BLink).  protein_id AT1G10890.1p  transcript_id AT1G10890.1  protein_id AT1G10890.1p  transcript_id AT1G10890.1  
At1g10900	chr1:003632396	0.0	C/3632396-3632675,3632754-3632919,3633135-3633289,3633502-3633689,3633775-3633885,3634092-3634257,3634798-3634965,3635302-3636321,3636406-3636416	AT1G10900.1 CDS  gene_syn T19D16.18, T19D16_18  go_component plasma membrane|GO:0005886|17317660|IDA  go_process phosphatidylinositol metabolic process|GO:0046488||IEA  go_function ATP binding|GO:0005524||IEA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||IEA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  product phosphatidylinositol-4-phosphate 5-kinase family protein  note phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 21911 Blast hits to 6231 proteins in 383 species: Archae - 0; Bacteria - 2241; Metazoa - 3448; Fungi - 276; Plants - 715; Viruses - 0; Other Eukaryotes - 15231 (source: NCBI BLink).  protein_id AT1G10900.1p  transcript_id AT1G10900.1  protein_id AT1G10900.1p  transcript_id AT1G10900.1  
At1g10910	chr1:003639908	0.0	W/3639908-3640179,3640547-3640631,3640743-3641003,3641241-3641543,3642079-3642183,3642380-3642479,3642785-3643104,3643196-3643372,3643454-3643582,3643732-3643974	AT1G10910.1 CDS  gene_syn T19D16.17, T19D16_17  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2) (TAIR:AT1G74850.1); Has 17570 Blast hits to 5782 proteins in 175 species: Archae - 1; Bacteria - 18; Metazoa - 305; Fungi - 261; Plants - 16266; Viruses - 0; Other Eukaryotes - 719 (source: NCBI BLink).  protein_id AT1G10910.1p  transcript_id AT1G10910.1  protein_id AT1G10910.1p  transcript_id AT1G10910.1  
At1g10920	chr1:003644587	0.0	C/3644587-3646109,3646194-3646352,3646503-3647004	AT1G10920.1 CDS  gene_syn LOV1, T19D16.16, T19D16_16  gene LOV1  function Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process response to molecule of fungal origin|GO:0002238|17804803|IEP  go_process defense response|GO:0006952||ISS  go_process defense response to fungus|GO:0050832|17804803|IMP  product LOV1; ATP binding  note LOV1; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, response to molecule of fungal origin, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT1G53350.1); Has 11724 Blast hits to 10662 proteins in 443 species: Archae - 16; Bacteria - 886; Metazoa - 1433; Fungi - 78; Plants - 9101; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT1G10920.1p  transcript_id AT1G10920.1  protein_id AT1G10920.1p  transcript_id AT1G10920.1  
At1g10920	chr1:003644587	0.0	C/3644587-3646109,3646194-3646352,3646503-3647004	AT1G10920.2 CDS  gene_syn LOV1, T19D16.16, T19D16_16  gene LOV1  function Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process response to molecule of fungal origin|GO:0002238|17804803|IEP  go_process defense response|GO:0006952||ISS  go_process defense response to fungus|GO:0050832|17804803|IMP  product LOV1; ATP binding  note LOV1; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, response to molecule of fungal origin, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT1G53350.1); Has 11724 Blast hits to 10662 proteins in 443 species: Archae - 16; Bacteria - 886; Metazoa - 1433; Fungi - 78; Plants - 9101; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT1G10920.2p  transcript_id AT1G10920.2  protein_id AT1G10920.2p  transcript_id AT1G10920.2  
At1g10930	chr1:003648032	0.0	C/3648032-3648371,3648464-3648541,3648642-3648736,3648831-3648957,3649093-3649148,3649259-3649420,3649644-3649724,3649802-3649960,3650040-3650162,3650282-3650350,3650464-3650534,3650605-3650728,3650816-3650951,3651015-3651166,3651261-3651381,3651622-3651749,3651863-3651949,3652104-3652235,3652309-3652675,3652949-3653079,3653168-3653341,3653562-3653975,3654204-3654261,3654718-3654876,3654975-3654997	AT1G10930.1 CDS  gene_syn ATRECQ4A, ATSGS1, RECQ4A, T19D16.15, T19D16_15  gene RECQ4A  function DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process telomere maintenance|GO:0000723|16146519|IMP  go_process double-strand break repair via homologous recombination|GO:0000724|16146519|IGI  go_process double-strand break repair via homologous recombination|GO:0000724|16146519|IMP  go_process response to DNA damage stimulus|GO:0006974|16146519|IGI  go_process response to DNA damage stimulus|GO:0006974|16146519|IMP  go_process chromosome organization|GO:0051276|18000056|IMP  go_function ATP-dependent helicase activity|GO:0008026||ISS  product RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note RECQ4A; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: chromosome organization, telomere maintenance, double-strand break repair via homologous recombination, response to DNA damage stimulus; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Helicase and RNase D C-terminal, HRDC (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: ATRECQ4B (ARABIDOPSIS RECQ HELICASE L4B); ATP binding / ATP-dependent helicase/ DNA helicase/ catalytic/ helicase/ nucleic acid binding / nucleotide binding (TAIR:AT1G60930.1); Has 22344 Blast hits to 22263 proteins in 1615 species: Archae - 398; Bacteria - 11405; Metazoa - 3108; Fungi - 1944; Plants - 900; Viruses - 17; Other Eukaryotes - 4572 (source: NCBI BLink).  protein_id AT1G10930.1p  transcript_id AT1G10930.1  protein_id AT1G10930.1p  transcript_id AT1G10930.1  
At1g10940	chr1:003656050	0.0	C/3656050-3656400,3656484-3656582,3656666-3656770,3656919-3657011,3657092-3657184,3657279-3657332,3657523-3657624,3657739-3657813,3658051-3658170	AT1G10940.1 CDS  gene_syn ARABIDOPSIS SERINE/THREONINE KINASE 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, ASK1, SNF1-RELATED PROTEIN KINASE 2.4, SNRK2-4, SNRK2.4, SRK2A, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4  gene SNRK2.4  function Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute.  go_component nucleus|GO:0005634|18433157|IDA  go_process response to osmotic stress|GO:0006970|15292193|IDA  go_process response to salt stress|GO:0009651|15292193|IDA  go_function kinase activity|GO:0016301|15292193|IDA  go_function kinase activity|GO:0016301||ISS  product SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4); kinase  note SNF1-RELATED PROTEIN KINASE 2.4 (SNRK2.4); FUNCTIONS IN: kinase activity; INVOLVED IN: response to salt stress, response to osmotic stress; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Plant protein serine/threonine kinase-like (InterPro:IPR015740), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SNRK2.10 (SNF1-RELATED PROTEIN KINASE 2.10); kinase (TAIR:AT1G60940.2); Has 82095 Blast hits to 80703 proteins in 1947 species: Archae - 47; Bacteria - 7215; Metazoa - 35590; Fungi - 7981; Plants - 14662; Viruses - 482; Other Eukaryotes - 16118 (source: NCBI BLink).  protein_id AT1G10940.1p  transcript_id AT1G10940.1  protein_id AT1G10940.1p  transcript_id AT1G10940.1  
At1g10950	chr1:003659322	0.0	W/3659322-3659411,3660325-3660517,3660622-3660726,3661050-3661067,3661162-3661259,3661341-3661493,3661721-3661855,3662005-3662171,3662284-3662378,3662463-3662836,3663197-3663470,3663555-3663622	AT1G10950.1 CDS  gene_syn T19D16.13, T19D16_13  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component integral to membrane|GO:0016021||ISS  product endomembrane protein 70, putative  note endomembrane protein 70, putative; LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT2G01970.1); Has 1032 Blast hits to 991 proteins in 166 species: Archae - 0; Bacteria - 8; Metazoa - 443; Fungi - 164; Plants - 234; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT1G10950.1p  transcript_id AT1G10950.1  protein_id AT1G10950.1p  transcript_id AT1G10950.1  
At1g10960	chr1:003664445	0.0	W/3664445-3664891	AT1G10960.1 CDS  gene_syn ATFD1, FERREDOXIN 1, T19D16.12, T19D16_12  gene ATFD1  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process electron transport chain|GO:0022900||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function iron-sulfur cluster binding|GO:0051536||IEA  go_function 2 iron, 2 sulfur cluster binding|GO:0051537||IEA  product ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding  note FERREDOXIN 1 (ATFD1); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: electron transport chain; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding (TAIR:AT1G60950.1); Has 5347 Blast hits to 5345 proteins in 903 species: Archae - 63; Bacteria - 3637; Metazoa - 8; Fungi - 9; Plants - 447; Viruses - 2; Other Eukaryotes - 1181 (source: NCBI BLink).  protein_id AT1G10960.1p  transcript_id AT1G10960.1  protein_id AT1G10960.1p  transcript_id AT1G10960.1  
At1g10970	chr1:003665201	0.0	C/3665201-3665656,3665858-3666555,3666761-3666818,3666919-3666933	AT1G10970.1 CDS  gene_syn ATZIP4, T19D16.11, T19D16_11, ZINC TRANSPORTER 4 PRECURSOR, ZIP4  gene ZIP4  function A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.  go_component chloroplast|GO:0009507|9618566|ISS  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_process response to zinc ion|GO:0010043|13129917|IEP  go_process response to copper ion|GO:0046688|13129917|IEP  go_function copper ion transmembrane transporter activity|GO:0005375|13129917|IGI  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  product ZIP4 (ZINC TRANSPORTER 4 PRECURSOR); cation transmembrane transporter/ copper ion transmembrane transporter  note ZINC TRANSPORTER 4 PRECURSOR (ZIP4); FUNCTIONS IN: cation transmembrane transporter activity, copper ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport, response to copper ion; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT3; cation transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G60960.1); Has 1686 Blast hits to 1562 proteins in 262 species: Archae - 0; Bacteria - 227; Metazoa - 520; Fungi - 383; Plants - 321; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G10970.1p  transcript_id AT1G10970.1  protein_id AT1G10970.1p  transcript_id AT1G10970.1  
At1g10980	chr1:003667531	0.0	C/3667531-3667696,3667877-3668007,3668096-3668194,3668395-3669319,3669592-3669821	AT1G10980.1 CDS  gene_syn T19D16.10, T19D16_10  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61670.1); Has 482 Blast hits to 481 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 255; Fungi - 99; Plants - 97; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G10980.1p  transcript_id AT1G10980.1  protein_id AT1G10980.1p  transcript_id AT1G10980.1  
At1g10990	chr1:003670513	0.0	C/3670513-3670901,3670980-3671091	AT1G10990.1 CDS  gene_syn T19D16.27, T19D16_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10990.1p  transcript_id AT1G10990.1  protein_id AT1G10990.1p  transcript_id AT1G10990.1  
At1g10990	chr1:003670513	0.0	C/3670513-3671091	AT1G10990.2 CDS  gene_syn T19D16.27, T19D16_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G10990.2p  transcript_id AT1G10990.2  protein_id AT1G10990.2p  transcript_id AT1G10990.2  
At1g11000	chr1:003671935	0.0	C/3671935-3672390,3672500-3672560,3672637-3672704,3672794-3672829,3672922-3673095,3673188-3673228,3673320-3673369,3673486-3673571,3673717-3673791,3673929-3674020,3674466-3674526,3674840-3674956,3675048-3675268,3675358-3675415,3675784-3675909	AT1G11000.1 CDS  gene_syn ATMLO4, MILDEW RESISTANCE LOCUS O 4, MLO4, T19D16.26, T19D16_26  gene MLO4  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO4 (MILDEW RESISTANCE LOCUS O 4); calmodulin binding  note MILDEW RESISTANCE LOCUS O 4 (MLO4); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO11 (MILDEW RESISTANCE LOCUS O 11); calmodulin binding (TAIR:AT5G53760.2); Has 285 Blast hits to 278 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 281; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G11000.1p  transcript_id AT1G11000.1  protein_id AT1G11000.1p  transcript_id AT1G11000.1  
At1g11010	chr1:003676607	0.0	W/3676607-3676644	AT1G11010.1 tRNA  gene_syn 60002.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT1G11010.1  
At1g11020	chr1:003676968	0.0	W/3676968-3677429,3677733-3677856,3677971-3678350	AT1G11020.1 CDS  gene_syn T19D16.25, T19D16_25  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G22120.1); Has 933 Blast hits to 932 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 489; Fungi - 88; Plants - 163; Viruses - 11; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT1G11020.1p  transcript_id AT1G11020.1  protein_id AT1G11020.1p  transcript_id AT1G11020.1  
At1g11030	chr1:003678775	0.0	C/3678775-3678848	AT1G11030.1 tRNA  gene_syn 60002.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: TCG)  transcript_id AT1G11030.1  
At1g11040	chr1:003679225	0.0	C/3679225-3679675,3679750-3680477,3680787-3680924	AT1G11040.1 CDS  gene_syn T19D16.7, T19D16_7  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ chaperone C-terminal domain-containing protein  note DNAJ chaperone C-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ chaperone C-terminal domain-containing protein (TAIR:AT1G44160.1); Has 15570 Blast hits to 9499 proteins in 1732 species: Archae - 65; Bacteria - 4875; Metazoa - 2087; Fungi - 879; Plants - 457; Viruses - 36; Other Eukaryotes - 7171 (source: NCBI BLink).  protein_id AT1G11040.1p  transcript_id AT1G11040.1  protein_id AT1G11040.1p  transcript_id AT1G11040.1  
At1g11050	chr1:003681892	0.0	W/3681892-3683769	AT1G11050.1 CDS  gene_syn T19D16.6, T19D16_6  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3); kinase/ receptor signaling protein serine/threonine kinase (TAIR:AT2G48010.1); Has 83015 Blast hits to 82195 proteins in 3011 species: Archae - 51; Bacteria - 7345; Metazoa - 36417; Fungi - 6499; Plants - 18575; Viruses - 312; Other Eukaryotes - 13816 (source: NCBI BLink).  protein_id AT1G11050.1p  transcript_id AT1G11050.1  protein_id AT1G11050.1p  transcript_id AT1G11050.1  
At1g11055	chr1:003683919	0.0	C/3683919-3684095	AT1G11055.1 pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At1g11060	chr1:003684568	0.0	W/3684568-3685193,3685688-3685787,3685921-3686260,3686457-3686569,3687025-3687153,3687294-3687387,3687489-3687593,3687702-3688321,3688425-3688678,3688859-3689006,3689099-3689196,3689283-3689364,3689454-3689537	AT1G11060.1 CDS  gene_syn T19D16.5, T19D16_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61030.1); Has 224 Blast hits to 176 proteins in 72 species: Archae - 0; Bacteria - 46; Metazoa - 133; Fungi - 8; Plants - 20; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G11060.1p  transcript_id AT1G11060.1  protein_id AT1G11060.1p  transcript_id AT1G11060.1  
At1g11070	chr1:003690406	0.0	C/3690406-3690624,3690915-3691133,3691225-3691390,3691462-3692434,3692530-3692653,3692731-3692826,3693196-3693510,3693622-3693648	AT1G11070.1 CDS  gene_syn T19D16.24, T19D16_24  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, root, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G61080.1); Has 36868 Blast hits to 20071 proteins in 902 species: Archae - 56; Bacteria - 5524; Metazoa - 15168; Fungi - 3990; Plants - 6285; Viruses - 1561; Other Eukaryotes - 4284 (source: NCBI BLink).  protein_id AT1G11070.1p  transcript_id AT1G11070.1  protein_id AT1G11070.1p  transcript_id AT1G11070.1  
At1g11080	chr1:003694917	0.0	C/3694917-3695063,3695151-3695256,3695521-3695616,3695704-3695837,3695919-3696215,3696395-3696492,3696626-3696718,3696812-3696907,3697011-3697118,3697456-3697759	AT1G11080.1 CDS  gene_syn T19D16.4, T19D16_4, scpl31, serine carboxypeptidase-like 31  gene scpl31  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl31 (serine carboxypeptidase-like 31); serine-type carboxypeptidase  note serine carboxypeptidase-like 31 (scpl31); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: SCPL32 (SERINE CARBOXYPEPTIDASE-LIKE 32); serine-type carboxypeptidase (TAIR:AT1G61130.1); Has 2478 Blast hits to 2433 proteins in 263 species: Archae - 0; Bacteria - 97; Metazoa - 570; Fungi - 568; Plants - 896; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink).  protein_id AT1G11080.1p  transcript_id AT1G11080.1  protein_id AT1G11080.1p  transcript_id AT1G11080.1  
At1g11090	chr1:003702655	0.0	W/3702655-3703629	AT1G11090.1 CDS  gene_syn T19D16.3, T19D16_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT2G39420.1); Has 2369 Blast hits to 2362 proteins in 633 species: Archae - 19; Bacteria - 1472; Metazoa - 122; Fungi - 94; Plants - 242; Viruses - 34; Other Eukaryotes - 386 (source: NCBI BLink).  protein_id AT1G11090.1p  transcript_id AT1G11090.1  protein_id AT1G11090.1p  transcript_id AT1G11090.1  
At1g11100	chr1:003703934	0.0	C/3703934-3704038,3704131-3704340,3704444-3705040,3705181-3705390,3705492-3705622,3705705-3706056,3706189-3706548,3706656-3706733,3706961-3707032,3707346-3708469,3708585-3708806,3708978-3709056,3709162-3709302	AT1G11100.1 CDS  gene_syn T19D16.2, T19D16_2  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function helicase activity|GO:0004386||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function DNA binding|GO:0003677||ISS  go_function helicase activity|GO:0004386||ISS  go_function ATP binding|GO:0005524||ISS  product SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related  note SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: EDA16 (embryo sac development arrest 16); ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding (TAIR:AT1G61140.1); Has 16120 Blast hits to 9888 proteins in 923 species: Archae - 66; Bacteria - 3590; Metazoa - 4813; Fungi - 3465; Plants - 1070; Viruses - 132; Other Eukaryotes - 2984 (source: NCBI BLink).  protein_id AT1G11100.1p  transcript_id AT1G11100.1  protein_id AT1G11100.1p  transcript_id AT1G11100.1  
At1g11110	chr1:003710364	0.0	W/3710364-3710387,3710573-3710855,3710952-3711055,3711173-3711295,3711561-3711723,3711972-3712108	AT1G11110.1 CDS  gene_syn T19D16.23, T19D16_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), CT11-RanBPM (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61150.6); Has 344 Blast hits to 344 proteins in 111 species: Archae - 0; Bacteria - 13; Metazoa - 162; Fungi - 58; Plants - 53; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G11110.1p  transcript_id AT1G11110.1  protein_id AT1G11110.1p  transcript_id AT1G11110.1  
At1g11112	chr1:003713220	0.0	C/3713220-3713456	AT1G11112.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11112.1p  transcript_id AT1G11112.1  protein_id AT1G11112.1p  transcript_id AT1G11112.1  
At1g11120	chr1:003715229	0.0	W/3715229-3715495,3717150-3717205,3718863-3719643	AT1G11120.1 CDS  gene_syn T19D16.22, T19D16_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1); Has 197 Blast hits to 183 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 10; Plants - 68; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G11120.1p  transcript_id AT1G11120.1  protein_id AT1G11120.1p  transcript_id AT1G11120.1  
At1g11120	chr1:003715229	0.0	W/3715229-3715543,3717150-3717320	AT1G11120.2 CDS  gene_syn T19D16.22, T19D16_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1).  protein_id AT1G11120.2p  transcript_id AT1G11120.2  protein_id AT1G11120.2p  transcript_id AT1G11120.2  
At1g11130	chr1:003723135	0.0	W/3723135-3723225,3723603-3723732,3723830-3723901,3724067-3724132,3724224-3724295,3724379-3724450,3724530-3724601,3724676-3724741,3724839-3724904,3724988-3725481,3725578-3725936,3726027-3726298,3726372-3726510,3726594-3726709,3726846-3727002,3727116-3727178	AT1G11130.1 CDS  gene_syn AT1G11140, SCM, SCRAMBLED, SRF9, STRUBBELIG, STRUBBELIG-RECEPTOR FAMILY 9, SUB, T19D16.8  gene SUB  function Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|15618487|ISS  go_process signal transduction|GO:0007165|11751054|IC  go_process positive regulation of atrichoblast fate specification|GO:0010059|15618487|IMP  go_process positive regulation of trichoblast fate specification|GO:0010063|15618487|IMP  go_process floral organ development|GO:0048437|15951420|IMP  go_process ovule development|GO:0048481|15951420|IMP  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|15618487|ISS  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515|15618487|ISS  go_function protein binding|GO:0005515||ISS  product SUB (STRUBBELIG); protein binding / receptor signaling protein serine/threonine kinase  note STRUBBELIG (SUB); FUNCTIONS IN: protein binding, receptor signaling protein serine/threonine kinase activity; INVOLVED IN: signal transduction, positive regulation of trichoblast fate specification, ovule development, floral organ development, positive regulation of atrichoblast fate specification; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: SRF3 (STRUBBELIG-RECEPTOR FAMILY 3); ATP binding / kinase/ protein serine/threonine kinase (TAIR:AT4G03390.1); Has 105230 Blast hits to 73111 proteins in 1804 species: Archae - 57; Bacteria - 6302; Metazoa - 33592; Fungi - 5364; Plants - 46731; Viruses - 701; Other Eukaryotes - 12483 (source: NCBI BLink).  protein_id AT1G11130.1p  transcript_id AT1G11130.1  protein_id AT1G11130.1p  transcript_id AT1G11130.1  
At1g11145	chr1:003727532	0.0	C/3727532-3727636,3727712-3728044,3728116-3728166	AT1G11145.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01120.1); Has 20 Blast hits to 20 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11145.1p  transcript_id AT1G11145.1  protein_id AT1G11145.1p  transcript_id AT1G11145.1  
At1g11150	chr1:003728971	0.0	W/3728971-3731624	AT1G11150.1 mRNA_TE_gene  pseudo  gene_syn T28P6.22  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g11160	chr1:003733406	0.0	W/3733406-3733430,3733797-3733927,3734154-3734271,3734427-3734653,3734739-3734841,3734982-3735052,3735189-3735263,3735351-3735494,3735571-3735730,3736248-3736724,3736812-3737000,3737326-3737382,3737476-3738215,3738317-3738430,3738520-3738594,3738679-3738791,3738895-3739011,3739102-3739170,3739303-3739363	AT1G11160.1 CDS  gene_syn T28P6.17, T28P6_17  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / katanin p80 subunit, putative (TAIR:AT1G61210.1); Has 86310 Blast hits to 31762 proteins in 780 species: Archae - 60; Bacteria - 8010; Metazoa - 40974; Fungi - 16769; Plants - 8346; Viruses - 5; Other Eukaryotes - 12146 (source: NCBI BLink).  protein_id AT1G11160.1p  transcript_id AT1G11160.1  protein_id AT1G11160.1p  transcript_id AT1G11160.1  
At1g11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743633,3743794-3743886,3743984-3744010,3744113-3744148,3744238-3744459	AT1G11170.1 CDS  gene_syn T28P6.16, T28P6_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61240.4); Has 179 Blast hits to 179 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G11170.1p  transcript_id AT1G11170.1  protein_id AT1G11170.1p  transcript_id AT1G11170.1  
At1g11170	chr1:003741724	0.0	W/3741724-3741804,3741903-3742004,3742086-3742121,3742203-3742313,3742404-3742487,3742577-3742695,3742896-3742997,3743072-3743188,3743270-3743335,3743423-3743489,3743580-3743667,3743794-3743828	AT1G11170.2 CDS  gene_syn T28P6.16, T28P6_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61240.4); Has 175 Blast hits to 175 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11170.2p  transcript_id AT1G11170.2  protein_id AT1G11170.2p  transcript_id AT1G11170.2  
At1g11175	chr1:003744858	0.0	W/3744858-3745655	AT1G11175.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G11175.1  
At1g11180	chr1:003745829	0.0	W/3745829-3745888,3746344-3746466,3746570-3746632,3746804-3746837,3746963-3747085,3747217-3747279,3747394-3747487,3747599-3747644,3747751-3747818,3747903-3747951,3748074-3748139,3748221-3748307	AT1G11180.1 CDS  gene_syn T28P6.15, T28P6_15  go_component integral to membrane|GO:0016021||IEA  go_process protein transport|GO:0015031||IEA  go_function transmembrane transporter activity|GO:0022857||ISS  product secretory carrier membrane protein (SCAMP) family protein  note secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: SC3 (SECRETORY CARRIER 3); transmembrane transporter (TAIR:AT1G61250.1); Has 511 Blast hits to 511 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 12; Plants - 121; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G11180.1p  transcript_id AT1G11180.1  protein_id AT1G11180.1p  transcript_id AT1G11180.1  
At1g11185	chr1:003749510	0.0	W/3749510-3750035	AT1G11185.1 ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G11185.1  
At1g11190	chr1:003750338	0.0	C/3750338-3750465,3750667-3750740,3751219-3751283,3751354-3751449,3751534-3751617,3751720-3751775,3751898-3752005,3752115-3752295,3752571-3752696	AT1G11190.1 CDS  gene_syn BFN1, BIFUNCTIONAL NUCLEASE I, ENDO1, ENDONUCLEASE 1, T28P6.14, T28P6_14  gene BFN1  function Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).  go_component endomembrane system|GO:0012505||IEA  go_process DNA catabolic process|GO:0006308||IEA  go_process DNA catabolic process|GO:0006308||ISS  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|10631260|IDA  go_function single-stranded DNA specific endodeoxyribonuclease activity|GO:0000014|17651368|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function endoribonuclease activity, producing 5 -phosphomonoesters|GO:0016891|10631260|IDA  go_function T/G mismatch-specific endonuclease activity|GO:0043765|17651368|IDA  product BFN1 (BIFUNCTIONAL NUCLEASE I); T/G mismatch-specific endonuclease/ endoribonuclease, producing 5 -phosphomonoesters / nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease  note BIFUNCTIONAL NUCLEASE I (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5 -phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: ENDO4 (endonuclease 4); T/G mismatch-specific endonuclease/ endonuclease/ nucleic acid binding / single-stranded DNA specific endodeoxyribonuclease (TAIR:AT4G21585.1); Has 563 Blast hits to 560 proteins in 149 species: Archae - 0; Bacteria - 133; Metazoa - 0; Fungi - 68; Plants - 78; Viruses - 4; Other Eukaryotes - 280 (source: NCBI BLink).  protein_id AT1G11190.1p  transcript_id AT1G11190.1  protein_id AT1G11190.1p  transcript_id AT1G11190.1  
At1g11200	chr1:003753896	0.0	W/3753896-3754162,3754267-3754680,3755253-3755459	AT1G11200.1 CDS  gene_syn T28P6.25  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21570.1); Has 593 Blast hits to 589 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 256; Fungi - 128; Plants - 126; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G11200.1p  transcript_id AT1G11200.1  protein_id AT1G11200.1p  transcript_id AT1G11200.1  
At1g11210	chr1:003755876	0.0	C/3755876-3756261,3756371-3756911	AT1G11210.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11220.1); Has 41 Blast hits to 41 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G11210.1p  transcript_id AT1G11210.1  protein_id AT1G11210.1p  transcript_id AT1G11210.1  
At1g11220	chr1:003760022	0.0	C/3760022-3760374,3760586-3761165	AT1G11220.1 CDS  gene_syn T28P6.12, T28P6_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, leaf whorl, embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11230.1); Has 48 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11220.1p  transcript_id AT1G11220.1  protein_id AT1G11220.1p  transcript_id AT1G11220.1  
At1g11230	chr1:003763439	0.0	C/3763439-3763785,3763906-3764464	AT1G11230.1 CDS  gene_syn T28P6.11, T28P6_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11220.1); Has 39 Blast hits to 38 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11230.1p  transcript_id AT1G11230.1  protein_id AT1G11230.1p  transcript_id AT1G11230.1  
At1g11240	chr1:003766936	0.0	C/3766936-3767192,3767406-3767520,3767885-3767990,3768088-3768212	AT1G11240.1 CDS  gene_syn T28P6.24, T28P6_24  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 2452 Blast hits to 1845 proteins in 201 species: Archae - 0; Bacteria - 81; Metazoa - 1026; Fungi - 315; Plants - 107; Viruses - 18; Other Eukaryotes - 905 (source: NCBI BLink).  protein_id AT1G11240.1p  transcript_id AT1G11240.1  protein_id AT1G11240.1p  transcript_id AT1G11240.1  
At1g11250	chr1:003768724	0.0	W/3768724-3769187,3769274-3769706	AT1G11250.1 CDS  gene_syn ATSYP125, SYNTAXIN OF PLANTS 125, SYP125, T28P6.10, T28P6_10  gene SYP125  function member of SYP12 Gene Family  go_component membrane|GO:0016020||IEA  go_process intracellular protein transport|GO:0006886|11115874|TAS  go_process membrane fusion|GO:0006944|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP125 (SYNTAXIN OF PLANTS 125); SNAP receptor  note SYNTAXIN OF PLANTS 125 (SYP125); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: SYP124 (SYNTAXIN OF PLANTS 124); SNAP receptor (TAIR:AT1G61290.1); Has 1956 Blast hits to 1950 proteins in 213 species: Archae - 5; Bacteria - 33; Metazoa - 1005; Fungi - 317; Plants - 262; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT1G11250.1p  transcript_id AT1G11250.1  protein_id AT1G11250.1p  transcript_id AT1G11250.1  
At1g11260	chr1:003777460	0.0	W/3777460-3777592,3777900-3778222,3778929-3779558,3779651-3780133	AT1G11260.1 CDS  gene_syn ATSTP1, STP1, SUGAR TRANSPORTER 1, T28P6.9, T28P6_9  gene STP1  function Encodes a H+/hexose cotransporter.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product STP1 (SUGAR TRANSPORTER 1); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note SUGAR TRANSPORTER 1 (STP1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT4G21480.1); Has 18848 Blast hits to 18448 proteins in 1170 species: Archae - 259; Bacteria - 7705; Metazoa - 3879; Fungi - 4540; Plants - 1379; Viruses - 2; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT1G11260.1p  transcript_id AT1G11260.1  protein_id AT1G11260.1p  transcript_id AT1G11260.1  
At1g11265	chr1:003781235	0.0	W/3781235-3785293	AT1G11265.1 mRNA_TE_gene  pseudo  gene_syn T28P6.8, T28P6_8  note Transposable element gene, copia-like retrotransposon family, has a 3.4e-253 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g11270	chr1:003785715	0.0	C/3785715-3786653	AT1G11270.1 CDS  gene_syn T28P6.23, T28P6_23  go_process heat acclimation|GO:0010286|16807682|IEP  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat acclimation; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT2G34280.1); Has 674 Blast hits to 664 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 672; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11270.1p  transcript_id AT1G11270.1  protein_id AT1G11270.1p  transcript_id AT1G11270.1  
At1g11270	chr1:003785715	0.0	C/3785715-3786653	AT1G11270.2 CDS  gene_syn T28P6.23, T28P6_23  go_process heat acclimation|GO:0010286|16807682|IEP  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat acclimation; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT2G34280.1); Has 674 Blast hits to 664 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 672; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11270.2p  transcript_id AT1G11270.2  protein_id AT1G11270.2p  transcript_id AT1G11270.2  
At1g11270	chr1:003785833	0.0	C/3785833-3785848,3785998-3786653	AT1G11270.3 CDS  gene_syn T28P6.23, T28P6_23  go_process heat acclimation|GO:0010286|16807682|IEP  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: heat acclimation; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: S locus F-box-related / SLF-related (TAIR:AT2G34280.1); Has 387 Blast hits to 386 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 385; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11270.3p  transcript_id AT1G11270.3  protein_id AT1G11270.3p  transcript_id AT1G11270.3  
At1g11280	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788842,3789119-3789226,3789340-3790621	AT1G11280.3 CDS  gene_syn T28P6.7, T28P6_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase (TAIR:AT1G61380.1); Has 86449 Blast hits to 85173 proteins in 3033 species: Archae - 49; Bacteria - 7413; Metazoa - 37892; Fungi - 6582; Plants - 19557; Viruses - 392; Other Eukaryotes - 14564 (source: NCBI BLink).  protein_id AT1G11280.3p  transcript_id AT1G11280.3  protein_id AT1G11280.3p  transcript_id AT1G11280.3  
At1g11280	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788842,3789119-3789226,3789340-3790647,3790725-3790728	AT1G11280.4 CDS  gene_syn T28P6.7, T28P6_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: SD1-29 (S-DOMAIN-1 29); carbohydrate binding / kinase/ protein kinase (TAIR:AT1G61380.1); Has 86385 Blast hits to 85108 proteins in 2986 species: Archae - 49; Bacteria - 7413; Metazoa - 37821; Fungi - 6584; Plants - 19559; Viruses - 392; Other Eukaryotes - 14567 (source: NCBI BLink).  protein_id AT1G11280.4p  transcript_id AT1G11280.4  protein_id AT1G11280.4p  transcript_id AT1G11280.4  
At1g11280	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788878,3789119-3789226,3789340-3790621	AT1G11280.2 CDS  gene_syn T28P6.7, T28P6_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61480.1); Has 86513 Blast hits to 85218 proteins in 3065 species: Archae - 49; Bacteria - 7411; Metazoa - 37927; Fungi - 6582; Plants - 19583; Viruses - 392; Other Eukaryotes - 14569 (source: NCBI BLink).  protein_id AT1G11280.2p  transcript_id AT1G11280.2  protein_id AT1G11280.2p  transcript_id AT1G11280.2  
At1g11280	chr1:003787456	0.0	C/3787456-3787755,3787835-3787985,3788070-3788307,3788410-3788620,3788706-3788878,3789119-3789226,3789340-3790647,3790725-3790728	AT1G11280.1 CDS  gene_syn T28P6.7, T28P6_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G61480.1); Has 86509 Blast hits to 85214 proteins in 3061 species: Archae - 49; Bacteria - 7411; Metazoa - 37923; Fungi - 6582; Plants - 19583; Viruses - 392; Other Eukaryotes - 14569 (source: NCBI BLink).  protein_id AT1G11280.1p  transcript_id AT1G11280.1  protein_id AT1G11280.1p  transcript_id AT1G11280.1  
At1g11290	chr1:003791454	0.0	C/3791454-3793883	AT1G11290.1 CDS  gene_syn CHLORORESPIRATORY REDUCTION22, CRR22, T28P6.20, T28P6_20  gene CRR22  function Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.  go_component chloroplast|GO:0009507|19182104|IDA  go_process mRNA modification|GO:0016556|19182104|IMP  go_function endonuclease activity|GO:0004519|19182104|IDA  product CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease  note CHLORORESPIRATORY REDUCTION22 (CRR22); FUNCTIONS IN: endonuclease activity; INVOLVED IN: mRNA modification; LOCATED IN: chloroplast; EXPRESSED IN: shoot, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 16928 Blast hits to 5346 proteins in 185 species: Archae - 1; Bacteria - 0; Metazoa - 157; Fungi - 84; Plants - 16293; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).  protein_id AT1G11290.1p  transcript_id AT1G11290.1  protein_id AT1G11290.1p  transcript_id AT1G11290.1  
At1g11300	chr1:003794389	0.0	W/3794389-3795676,3795766-3795873,3795955-3796133,3796218-3796428,3796511-3796748,3796829-3796958,3797038-3797341,3797737-3799056,3799147-3799254,3799336-3799514,3799586-3799796,3799880-3800117,3800202-3800331,3800411-3800719	AT1G11300.1 CDS  gene_syn T28P6.6, T28P6_6  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding  note ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.1); Has 178646 Blast hits to 89466 proteins in 3234 species: Archae - 98; Bacteria - 14908; Metazoa - 78094; Fungi - 14038; Plants - 40044; Viruses - 779; Other Eukaryotes - 30685 (source: NCBI BLink).  protein_id AT1G11300.1p  transcript_id AT1G11300.1  protein_id AT1G11300.1p  transcript_id AT1G11300.1  
At1g11310	chr1:003800899	0.0	C/3800899-3801306,3801400-3801460,3801550-3801617,3801703-3801738,3801829-3802002,3802082-3802122,3802209-3802258,3802345-3802439,3802523-3802686,3802757-3802817,3802911-3803027,3803121-3803386,3803502-3803559,3803748-3803870	AT1G11310.1 CDS  gene_syn ATMLO2, MILDEW RESISTANCE LOCUS O 2, MLO2, PMR2, POWDERY MILDEW RESISTANT 2, T28P6.4, T28P6_4  gene MLO2  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16525893|ISS  go_component plasma membrane|GO:0005886|16525893|TAS  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_process response to fungus|GO:0009620|10677553|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|16732289|IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_function calmodulin binding|GO:0005516||ISS  product MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding  note MILDEW RESISTANCE LOCUS O 2 (MLO2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, cell death, response to fungus, negative regulation of defense response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO6 (MILDEW RESISTANCE LOCUS O 6); calmodulin binding (TAIR:AT1G61560.1); Has 305 Blast hits to 296 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 298; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G11310.1p  transcript_id AT1G11310.1  protein_id AT1G11310.1p  transcript_id AT1G11310.1  
At1g11310	chr1:003801546	0.0	C/3801546-3801617,3801703-3801738,3801829-3802002,3802082-3802122,3802209-3802258,3802345-3802439,3802523-3802686,3802757-3802817,3802911-3803027,3803121-3803386,3803502-3803559,3803748-3803870	AT1G11310.2 CDS  gene_syn ATMLO2, MILDEW RESISTANCE LOCUS O 2, MLO2, PMR2, POWDERY MILDEW RESISTANT 2, T28P6.4, T28P6_4  gene MLO2  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16525893|ISS  go_component plasma membrane|GO:0005886|16525893|TAS  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_process response to fungus|GO:0009620|10677553|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|16732289|IMP  go_process negative regulation of defense response|GO:0031348|16732289|IMP  go_function calmodulin binding|GO:0005516||ISS  product MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding  note MILDEW RESISTANCE LOCUS O 2 (MLO2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, cell death, response to fungus, negative regulation of defense response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO6 (MILDEW RESISTANCE LOCUS O 6); calmodulin binding (TAIR:AT1G61560.1); Has 291 Blast hits to 285 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G11310.2p  transcript_id AT1G11310.2  protein_id AT1G11310.2p  transcript_id AT1G11310.2  
At1g11320	chr1:003807241	0.0	W/3807241-3807351,3807463-3807930,3808033-3808728	AT1G11320.1 CDS  gene_syn T28P6.3, T28P6_3  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11320.1p  transcript_id AT1G11320.1  protein_id AT1G11320.1p  transcript_id AT1G11320.1  
At1g11330	chr1:003810372	0.0	W/3810372-3811689,3811784-3811891,3811985-3812172,3812259-3812469,3812568-3812805,3812876-3813026,3813108-3813416	AT1G11330.1 CDS  gene_syn T28P6.2, T28P6_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: SD1-13 (S-DOMAIN-1 13); kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G11350.1); Has 89878 Blast hits to 88532 proteins in 3098 species: Archae - 51; Bacteria - 7508; Metazoa - 39090; Fungi - 7218; Plants - 20093; Viruses - 431; Other Eukaryotes - 15487 (source: NCBI BLink).  protein_id AT1G11330.1p  transcript_id AT1G11330.1  protein_id AT1G11330.1p  transcript_id AT1G11330.1  
At1g11340	chr1:003814116	0.0	C/3814116-3814430,3814514-3814658,3814737-3814974,3815072-3815282,3815387-3815588,3815672-3815791,3815946-3817420	AT1G11340.1 CDS  gene_syn T28P6.1, T28P6_1  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus lectin protein kinase family protein  note S-locus lectin protein kinase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), EGF-like, type 3 (InterPro:IPR000742), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus protein kinase, putative (TAIR:AT1G11410.1); Has 89014 Blast hits to 87577 proteins in 3317 species: Archae - 59; Bacteria - 7748; Metazoa - 38979; Fungi - 6745; Plants - 19965; Viruses - 403; Other Eukaryotes - 15115 (source: NCBI BLink).  protein_id AT1G11340.1p  transcript_id AT1G11340.1  protein_id AT1G11340.1p  transcript_id AT1G11340.1  
At1g11350	chr1:003817725	0.0	C/3817725-3818033,3818118-3818268,3818363-3818600,3818705-3818915,3819000-3819193,3819284-3819391,3819471-3820752	AT1G11350.1 CDS  gene_syn CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, CBRLK1, RKS2, S-DOMAIN-1 13, SD1-13, T23J18.2, T23J18_2  gene SD1-13  go_component plasma membrane|GO:0005886|19071125|IDA  go_process protein amino acid autophosphorylation|GO:0046777|18552232|IDA  go_function protein kinase activity|GO:0004672|18552232|IDA  go_function protein serine/threonine kinase activity|GO:0004674|19071125|IDA  go_function kinase activity|GO:0016301||ISS  product SD1-13 (S-DOMAIN-1 13); kinase/ protein kinase/ protein serine/threonine kinase  note S-DOMAIN-1 13 (SD1-13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-like, type 2 (InterPro:IPR013227), Apple-like (InterPro:IPR003609), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.1); Has 90493 Blast hits to 89330 proteins in 3120 species: Archae - 55; Bacteria - 7697; Metazoa - 39169; Fungi - 7284; Plants - 20161; Viruses - 423; Other Eukaryotes - 15704 (source: NCBI BLink).  protein_id AT1G11350.1p  transcript_id AT1G11350.1  protein_id AT1G11350.1p  transcript_id AT1G11350.1  
At1g11360	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.1 CDS  gene_syn T23J18.35, T23J18_35  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to stress|GO:0006950||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to stress|GO:0006950||ISS  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; INVOLVED IN: response to stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT5G54430.1); Has 714 Blast hits to 713 proteins in 147 species: Archae - 6; Bacteria - 231; Metazoa - 42; Fungi - 27; Plants - 403; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G11360.1p  transcript_id AT1G11360.1  protein_id AT1G11360.1p  transcript_id AT1G11360.1  
At1g11360	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.2 CDS  gene_syn T23J18.35, T23J18_35  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to stress|GO:0006950||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to stress|GO:0006950||ISS  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; INVOLVED IN: response to stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT5G54430.1); Has 714 Blast hits to 713 proteins in 147 species: Archae - 6; Bacteria - 231; Metazoa - 42; Fungi - 27; Plants - 403; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G11360.2p  transcript_id AT1G11360.2  protein_id AT1G11360.2p  transcript_id AT1G11360.2  
At1g11360	chr1:003822171	0.0	C/3822171-3822899	AT1G11360.3 CDS  gene_syn T23J18.35, T23J18_35  go_process response to stress|GO:0006950||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to stress|GO:0006950||ISS  product universal stress protein (USP) family protein  note universal stress protein (USP) family protein; INVOLVED IN: response to stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: universal stress protein (USP) family protein (TAIR:AT5G54430.1).  protein_id AT1G11360.3p  transcript_id AT1G11360.3  protein_id AT1G11360.3p  transcript_id AT1G11360.3  
At1g11362	chr1:003824630	0.0	C/3824630-3825184	AT1G11362.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT1G50325.1); Has 51 Blast hits to 49 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11362.1p  transcript_id AT1G11362.1  protein_id AT1G11362.1p  transcript_id AT1G11362.1  
At1g11370	chr1:003828098	0.0	C/3828098-3828585,3829970-3830234,3830832-3830945	AT1G11370.1 CDS  gene_syn T23J18.3, T23J18_3  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase (TAIR:AT1G11580.1); Has 1235 Blast hits to 1206 proteins in 175 species: Archae - 2; Bacteria - 252; Metazoa - 1; Fungi - 128; Plants - 852; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11370.1p  transcript_id AT1G11370.1  protein_id AT1G11370.1p  transcript_id AT1G11370.1  
At1g11380	chr1:003832695	0.0	W/3832695-3833008,3833167-3833230,3833338-3833502,3833609-3833674,3833766-3833921	AT1G11380.1 CDS  gene_syn T23J18.4, T23J18_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05350.1); Has 187 Blast hits to 186 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 8; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11380.1p  transcript_id AT1G11380.1  protein_id AT1G11380.1p  transcript_id AT1G11380.1  
At1g11390	chr1:003834762	0.0	C/3834762-3834881,3835127-3835282,3835406-3835669,3835750-3837076,3837298-3837305	AT1G11390.1 CDS  gene_syn T23J18.5, T23J18_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ABC1 family protein  note ABC1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC1 family protein (TAIR:AT1G61640.1); Has 6866 Blast hits to 6818 proteins in 1101 species: Archae - 67; Bacteria - 2611; Metazoa - 374; Fungi - 362; Plants - 325; Viruses - 14; Other Eukaryotes - 3113 (source: NCBI BLink).  protein_id AT1G11390.1p  transcript_id AT1G11390.1  protein_id AT1G11390.1p  transcript_id AT1G11390.1  
At1g11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.1 CDS  gene_syn PYM, Partner of Y14-Mago, T23J18.7, T23J18_7  gene PYM  function The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.  go_component nucleoplasm|GO:0005654|16953428|IDA  go_component nucleolus|GO:0005730|16953428|IDA  go_component cytoplasm|GO:0005737|16953428|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|16953428|IPI  product PYM (Partner of Y14-Mago); protein binding  note Partner of Y14-Mago (PYM); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleoplasm, nucleolus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exon junction complex, Pym (InterPro:IPR015362); Has 257 Blast hits to 257 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 133; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G11400.1p  transcript_id AT1G11400.1  protein_id AT1G11400.1p  transcript_id AT1G11400.1  
At1g11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.2 CDS  gene_syn PYM, Partner of Y14-Mago, T23J18.7, T23J18_7  gene PYM  function The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.  go_component nucleoplasm|GO:0005654|16953428|IDA  go_component nucleolus|GO:0005730|16953428|IDA  go_component cytoplasm|GO:0005737|16953428|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|16953428|IPI  product PYM (Partner of Y14-Mago); protein binding  note Partner of Y14-Mago (PYM); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleoplasm, nucleolus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exon junction complex, Pym (InterPro:IPR015362); Has 257 Blast hits to 257 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 133; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G11400.2p  transcript_id AT1G11400.2  protein_id AT1G11400.2p  transcript_id AT1G11400.2  
At1g11400	chr1:003838777	0.0	W/3838777-3838959,3839227-3839340,3839422-3839610,3839850-3839978	AT1G11400.3 CDS  gene_syn PYM, Partner of Y14-Mago, T23J18.7, T23J18_7  gene PYM  function The PYM gene encodes a protein capable of interacting with MAGO, and Y14, whose orthologs form part of the exon junction complex in animal cells. In vitro binding assays indicate that PYM can bind to MAGO and Y14 either individually, or when they are together. But, MAGO-Y14-PYM ternary complexes are difficult to detect in vivo in Arabidopsis based on pull-down experiments. However there is some evidence for a weak association in Arabidopsis flowers. PYM appears primarily cytoplasmic, but it also seems to into the nucleus at times. Its nuclear localization signal has not been rigorously defined, but there is evidence for a nuclear export signal between amino acids 171-205 in the C-terminus.  go_component nucleoplasm|GO:0005654|16953428|IDA  go_component nucleolus|GO:0005730|16953428|IDA  go_component cytoplasm|GO:0005737|16953428|IDA  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|16953428|IPI  product PYM (Partner of Y14-Mago); protein binding  note Partner of Y14-Mago (PYM); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleoplasm, nucleolus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exon junction complex, Pym (InterPro:IPR015362); Has 257 Blast hits to 257 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 133; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G11400.3p  transcript_id AT1G11400.3  protein_id AT1G11400.3p  transcript_id AT1G11400.3  
At1g11410	chr1:003841286	0.0	W/3841286-3842565,3842654-3842782,3842882-3843285,3843391-3843628,3843720-3843864,3843958-3844284	AT1G11410.1 CDS  gene_syn T23J18.8, T23J18_8  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process recognition of pollen|GO:0048544||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function sugar binding|GO:0005529||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product S-locus protein kinase, putative  note S-locus protein kinase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-like, type 2 (InterPro:IPR013227), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11340.1); Has 88143 Blast hits to 86790 proteins in 3328 species: Archae - 53; Bacteria - 7715; Metazoa - 38620; Fungi - 6632; Plants - 19718; Viruses - 411; Other Eukaryotes - 14994 (source: NCBI BLink).  protein_id AT1G11410.1p  transcript_id AT1G11410.1  protein_id AT1G11410.1p  transcript_id AT1G11410.1  
At1g11420	chr1:003844581	0.0	C/3844581-3845266,3845391-3845475,3845543-3845662,3845752-3845838,3845944-3846345,3846438-3846872	AT1G11420.1 CDS  gene_syn T23J18.9, T23J18_9  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT2G47230.1); Has 429 Blast hits to 385 proteins in 73 species: Archae - 17; Bacteria - 23; Metazoa - 136; Fungi - 17; Plants - 161; Viruses - 1; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G11420.1p  transcript_id AT1G11420.1  protein_id AT1G11420.1p  transcript_id AT1G11420.1  
At1g11430	chr1:003847273	0.0	W/3847273-3847634,3848411-3848508,3848606-3848671,3848766-3848938	AT1G11430.1 CDS  gene_syn T23J18.10, T23J18_10  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  product plastid developmental protein DAG, putative  note plastid developmental protein DAG, putative; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT3G06790.2); Has 147 Blast hits to 135 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11430.1p  transcript_id AT1G11430.1  protein_id AT1G11430.1p  transcript_id AT1G11430.1  
At1g11440	chr1:003849418	0.0	W/3849418-3850509	AT1G11440.1 CDS  gene_syn T23J18.11, T23J18_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 22740 Blast hits to 8622 proteins in 417 species: Archae - 22; Bacteria - 573; Metazoa - 11353; Fungi - 2147; Plants - 905; Viruses - 631; Other Eukaryotes - 7109 (source: NCBI BLink).  protein_id AT1G11440.1p  transcript_id AT1G11440.1  protein_id AT1G11440.1p  transcript_id AT1G11440.1  
At1g11450	chr1:003853470	0.0	W/3853470-3853519,3853758-3853820,3853995-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.2 CDS  gene_syn T23J18.12, T23J18_12  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G11460.1); Has 1077 Blast hits to 1068 proteins in 143 species: Archae - 11; Bacteria - 396; Metazoa - 4; Fungi - 4; Plants - 622; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G11450.2p  transcript_id AT1G11450.2  protein_id AT1G11450.2p  transcript_id AT1G11450.2  
At1g11450	chr1:003854005	0.0	W/3854005-3854111,3854342-3854741,3854870-3855021,3855136-3855259	AT1G11450.1 CDS  gene_syn T23J18.12, T23J18_12  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G11460.1); Has 865 Blast hits to 858 proteins in 86 species: Archae - 4; Bacteria - 232; Metazoa - 4; Fungi - 0; Plants - 610; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G11450.1p  transcript_id AT1G11450.1  protein_id AT1G11450.1p  transcript_id AT1G11450.1  
At1g11460	chr1:003857005	0.0	W/3857005-3857207,3857370-3857432,3857595-3857711,3858222-3858624,3858916-3859067,3859193-3859268	AT1G11460.1 CDS  gene_syn T23J18.13, T23J18_13  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G01070.1); Has 1259 Blast hits to 1247 proteins in 176 species: Archae - 13; Bacteria - 459; Metazoa - 4; Fungi - 0; Plants - 632; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).  protein_id AT1G11460.1p  transcript_id AT1G11460.1  protein_id AT1G11460.1p  transcript_id AT1G11460.1  
At1g11470	chr1:003859874	0.0	C/3859874-3860119,3860227-3860288,3860378-3860522	AT1G11470.1 CDS  gene_syn T23J18.14, T23J18_14  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G02370.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11470.1p  transcript_id AT1G11470.1  protein_id AT1G11470.1p  transcript_id AT1G11470.1  
At1g11475	chr1:003862520	0.0	W/3862520-3862555,3862759-3862817,3863584-3863678,3863780-3863805	AT1G11475.1 CDS  gene_syn NRPB10, NRPD10, NRPE10, T23J18.30  gene NRPB10  function Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB10.  go_process transcription|GO:0006350||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_component DNA-directed RNA polymerase IV complex|GO:0000418|19110459|IPI  go_component DNA-directed RNA polymerase II, core complex|GO:0005665|19110459|IPI  go_component DNA-directed RNA polymerase V complex|GO:0080137|19110459|IPI  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPB10; DNA binding / DNA-directed RNA polymerase  note NRPB10; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, regulation of transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8 Kd subunits (InterPro:IPR000268), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase II, putative (RPB10) (TAIR:AT1G61700.1); Has 709 Blast hits to 709 proteins in 230 species: Archae - 167; Bacteria - 0; Metazoa - 123; Fungi - 120; Plants - 39; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT1G11475.1p  transcript_id AT1G11475.1  protein_id AT1G11475.1p  transcript_id AT1G11475.1  
At1g11480	chr1:003864368	0.0	C/3864368-3864827,3864953-3865014,3865100-3865136,3865256-3865434,3865529-3866435,3866655-3866707	AT1G11480.2 CDS  gene_syn T23J18.15, T23J18_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product eukaryotic translation initiation factor-related  note eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 311 Blast hits to 289 proteins in 88 species: Archae - 0; Bacteria - 13; Metazoa - 160; Fungi - 45; Plants - 34; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G11480.2p  transcript_id AT1G11480.2  protein_id AT1G11480.2p  transcript_id AT1G11480.2  
At1g11480	chr1:003864368	0.0	C/3864368-3864827,3864953-3865014,3865100-3865136,3865256-3865434,3865529-3866435,3866659-3866750	AT1G11480.1 CDS  gene_syn T23J18.15, T23J18_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product eukaryotic translation initiation factor-related  note eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 308 Blast hits to 286 proteins in 90 species: Archae - 0; Bacteria - 15; Metazoa - 157; Fungi - 47; Plants - 34; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G11480.1p  transcript_id AT1G11480.1  protein_id AT1G11480.1p  transcript_id AT1G11480.1  
At1g11482	chr1:003867405	0.0	C/3867405-3868870	AT1G11482.1 pseudogenic_transcript  pseudo  function unknown pseudogene  
At1g11490	chr1:003868884	0.0	C/3868884-3869527,3869612-3870065	AT1G11490.1 CDS  gene_syn T23J18.16, T23J18_16  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G27240.1); Has 116 Blast hits to 115 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11490.1p  transcript_id AT1G11490.1  protein_id AT1G11490.1p  transcript_id AT1G11490.1  
At1g11500	chr1:003870833	0.0	W/3870833-3870931,3871018-3871244,3871342-3871570	AT1G11500.1 CDS  gene_syn T23J18.31, T23J18_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21310.1); Has 50 Blast hits to 50 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11500.1p  transcript_id AT1G11500.1  protein_id AT1G11500.1p  transcript_id AT1G11500.1  
At1g11510	chr1:003871778	0.0	C/3871778-3872836	AT1G11510.1 CDS  gene_syn T23J18.17, T23J18_17  go_function transcription regulator activity|GO:0030528|12535344|TAS  product DNA-binding storekeeper protein-related  note DNA-binding storekeeper protein-related; FUNCTIONS IN: transcription regulator activity; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT1G61730.1); Has 5628 Blast hits to 2349 proteins in 225 species: Archae - 0; Bacteria - 3367; Metazoa - 810; Fungi - 347; Plants - 321; Viruses - 20; Other Eukaryotes - 763 (source: NCBI BLink).  protein_id AT1G11510.1p  transcript_id AT1G11510.1  protein_id AT1G11510.1p  transcript_id AT1G11510.1  
At1g11520	chr1:003873029	0.0	W/3873029-3873619	AT1G11520.1 CDS  gene_syn T23J18.18, T23J18_18  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pliceosome associated protein-related  note pliceosome associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: proline-rich spliceosome-associated (PSP) family protein (TAIR:AT4G21660.1); Has 110 Blast hits to 105 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G11520.1p  transcript_id AT1G11520.1  protein_id AT1G11520.1p  transcript_id AT1G11520.1  
At1g11530	chr1:003874518	0.0	W/3874518-3874595,3874872-3874994,3875156-3875311	AT1G11530.1 CDS  gene_syn ATCXXS1, C-terminal cysteine residue is changed to a serine 1  gene ATCXXS1  function Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.  go_component cytosol|GO:0005829|18384502|IDA  go_process protein thiol-disulfide exchange|GO:0006467|18384502|IDA  go_process protein amino acid deglutathionylation|GO:0080058|18384502|IDA  go_function protein disulfide isomerase activity|GO:0003756|18384502|IDA  product ATCXXS1 (C-terminal cysteine residue is changed to a serine 1); protein disulfide isomerase  note C-terminal cysteine residue is changed to a serine 1 (ATCXXS1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: protein thiol-disulfide exchange, protein amino acid deglutathionylation; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766); BEST Arabidopsis thaliana protein match is: ATTRX1; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT3G51030.1); Has 5987 Blast hits to 5981 proteins in 1310 species: Archae - 93; Bacteria - 2585; Metazoa - 818; Fungi - 404; Plants - 683; Viruses - 0; Other Eukaryotes - 1404 (source: NCBI BLink).  protein_id AT1G11530.1p  transcript_id AT1G11530.1  protein_id AT1G11530.1p  transcript_id AT1G11530.1  
At1g11540	chr1:003875476	0.0	C/3875476-3875784,3875880-3876020,3876116-3876265,3876470-3876973	AT1G11540.1 CDS  gene_syn T23J18.20, T23J18_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61740.1); Has 2289 Blast hits to 2138 proteins in 447 species: Archae - 89; Bacteria - 1004; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 1109 (source: NCBI BLink).  protein_id AT1G11540.1p  transcript_id AT1G11540.1  protein_id AT1G11540.1p  transcript_id AT1G11540.1  
At1g11545	chr1:003878689	0.0	C/3878689-3879097,3879508-3879710,3879809-3879909,3880082-3880286	AT1G11545.1 CDS  gene_syn T23J18.21, T23J18_21  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative  note xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT5G65730.1); Has 1331 Blast hits to 1325 proteins in 205 species: Archae - 0; Bacteria - 180; Metazoa - 0; Fungi - 272; Plants - 798; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G11545.1p  transcript_id AT1G11545.1  protein_id AT1G11545.1p  transcript_id AT1G11545.1  
At1g11550	chr1:003881529	0.0	W/3881529-3881608	AT1G11550.1 tRNA  gene_syn 51678.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: TAG)  transcript_id AT1G11550.1  
At1g11560	chr1:003881788	0.0	W/3881788-3882819	AT1G11560.1 CDS  gene_syn T23J18.22, T23J18_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function oligosaccharide transmembrane transporter activity|GO:0015157||ISS  product OST3/OST6 family protein  note OST3/OST6 family protein; FUNCTIONS IN: oligosaccharide transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: OST3/OST6 (InterPro:IPR006844); BEST Arabidopsis thaliana protein match is: OST3/OST6 family protein (TAIR:AT1G61790.1); Has 204 Blast hits to 204 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 22; Plants - 34; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G11560.1p  transcript_id AT1G11560.1  protein_id AT1G11560.1p  transcript_id AT1G11560.1  
At1g11570	chr1:003883280	0.0	W/3883280-3883603,3883882-3883956	AT1G11570.2 CDS  gene_syn NTF2-like, NTL, T23J18.32, T23J18_32  gene NTL  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634||ISS  go_process protein import into nucleus|GO:0006606||ISS  go_function protein transporter activity|GO:0008565||ISS  product nuclear transport factor 2 (NTF2), putative  note NTF2-like (NTL); FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: nucleus, intracellular; EXPRESSED IN: sperm cell, leaf whorl, pedicel, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter (TAIR:AT1G27970.1).  protein_id AT1G11570.2p  transcript_id AT1G11570.2  protein_id AT1G11570.2p  transcript_id AT1G11570.2  
At1g11570	chr1:003883280	0.0	W/3883280-3883663	AT1G11570.1 CDS  gene_syn NTF2-like, NTL, T23J18.32, T23J18_32  gene NTL  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634||ISS  go_process protein import into nucleus|GO:0006606||ISS  go_function protein transporter activity|GO:0008565||ISS  product nuclear transport factor 2 (NTF2), putative  note NTF2-like (NTL); FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: nucleus, intracellular; EXPRESSED IN: sperm cell, leaf whorl, pedicel, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter (TAIR:AT1G27970.2); Has 643 Blast hits to 643 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 413; Fungi - 109; Plants - 66; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G11570.1p  transcript_id AT1G11570.1  protein_id AT1G11570.1p  transcript_id AT1G11570.1  
At1g11572	chr1:003884455	0.0	W/3884455-3884724	AT1G11572.1 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11572.1p  transcript_id AT1G11572.1  protein_id AT1G11572.1p  transcript_id AT1G11572.1  
At1g11580	chr1:003888730	0.0	W/3888730-3889446,3889601-3889865,3889958-3890649	AT1G11580.1 CDS  gene_syn ATPMEPCRA, METHYLESTERASE PCR A, PMEPCRA, T23J18.24, T23J18_24  gene PMEPCRA  go_component cell wall|GO:0005618|14595688|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase  note METHYLESTERASE PCR A (PMEPCRA); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase, putative (TAIR:AT1G11590.1); Has 1499 Blast hits to 1465 proteins in 271 species: Archae - 0; Bacteria - 420; Metazoa - 1; Fungi - 132; Plants - 945; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G11580.1p  transcript_id AT1G11580.1  protein_id AT1G11580.1p  transcript_id AT1G11580.1  
At1g11590	chr1:003892634	0.0	W/3892634-3893257,3893563-3893827,3893935-3894620	AT1G11590.1 CDS  gene_syn T23J18.25, T23J18_25  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectin methylesterase, putative  note pectin methylesterase, putative; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT4G03930.1); Has 1373 Blast hits to 1344 proteins in 245 species: Archae - 0; Bacteria - 375; Metazoa - 1; Fungi - 129; Plants - 866; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11590.1p  transcript_id AT1G11590.1  protein_id AT1G11590.1p  transcript_id AT1G11590.1  
At1g11592	chr1:003895179	0.0	C/3895179-3896917	AT1G11592.2 ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G11592.2  
At1g11592	chr1:003895268	0.0	C/3895268-3896934	AT1G11592.1 ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G11592.1  
At1g11593	chr1:003898002	0.0	W/3898002-3898571	AT1G11593.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  product enzyme inhibitor/ pectinesterase  note enzyme inhibitor/ pectinesterase; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: enzyme inhibitor/ pectinesterase (TAIR:AT3G27999.1).  protein_id AT1G11593.1p  transcript_id AT1G11593.1  protein_id AT1G11593.1p  transcript_id AT1G11593.1  
At1g11595	chr1:003898631	0.0	W/3898631-3899699	AT1G11595.1 pseudogenic_transcript  pseudo  gene_syn T23J18.28  note pseudogene, putative glucose 6 phosphate/phosphate translocator, blastp match of 60% identity and 2.3e-78 P-value to GP|2997593|gb|AAC08526.1||AF020816 glucose-6-phosphate/phosphate-translocator precursor {Solanum tuberosum}  
At1g11600	chr1:003902090	0.0	W/3902090-3903622	AT1G11600.1 CDS  gene_syn CYP77B1, CYTOCHROME P450, FAMILY 77, SUBFAMILY B, POLYPEPTIDE 1, F25C20.25, F25C20_25  gene CYP77B1  function member of CYP77B  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP77B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP77B1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP77A4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT5G04660.1); Has 23104 Blast hits to 22770 proteins in 1217 species: Archae - 21; Bacteria - 1875; Metazoa - 10502; Fungi - 4282; Plants - 5557; Viruses - 3; Other Eukaryotes - 864 (source: NCBI BLink).  protein_id AT1G11600.1p  transcript_id AT1G11600.1  protein_id AT1G11600.1p  transcript_id AT1G11600.1  
At1g11608	chr1:003906266	0.0	W/3906266-3906520	AT1G11608.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G11620.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11608.1p  transcript_id AT1G11608.1  protein_id AT1G11608.1p  transcript_id AT1G11608.1  
At1g11610	chr1:003907461	0.0	C/3907461-3907790,3907885-3908169,3908260-3908751,3908905-3909291	AT1G11610.1 CDS  gene_syn CYP71A18, CYTOCHROME P450, FAMILY 71, SUBFAMILY A, POLYPEPTIDE 18, F25C20.24, F25C20_24  gene CYP71A18  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71A18; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71A18; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT2G30750.1); Has 24321 Blast hits to 24182 proteins in 1288 species: Archae - 21; Bacteria - 2578; Metazoa - 10306; Fungi - 4609; Plants - 5854; Viruses - 3; Other Eukaryotes - 950 (source: NCBI BLink).  protein_id AT1G11610.1p  transcript_id AT1G11610.1  protein_id AT1G11610.1p  transcript_id AT1G11610.1  
At1g11620	chr1:003910833	0.0	W/3910833-3911924	AT1G11620.1 CDS  gene_syn F25C20.23, F25C20_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT1G31510.1); Has 1263 Blast hits to 1246 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1261; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G11620.1p  transcript_id AT1G11620.1  protein_id AT1G11620.1p  transcript_id AT1G11620.1  
At1g11630	chr1:003913168	0.0	C/3913168-3914385	AT1G11630.1 CDS  gene_syn F25C20.22, F25C20_22  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PPR336 (pentatricopeptide repeat 336) (TAIR:AT1G61870.1); Has 12390 Blast hits to 3643 proteins in 147 species: Archae - 4; Bacteria - 8; Metazoa - 197; Fungi - 174; Plants - 11635; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT1G11630.1p  transcript_id AT1G11630.1  protein_id AT1G11630.1p  transcript_id AT1G11630.1  
At1g11640	chr1:003914629	0.0	C/3914629-3914700	AT1G11640.1 tRNA  gene_syn 51344.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT1G11640.1  
At1g11650	chr1:003914895	0.0	W/3914895-3915155,3915428-3915893,3917021-3917079,3917167-3917297,3917416-3917512,3917738-3917941	AT1G11650.2 CDS  gene_syn ATRBP45B, F25C20.21, F25C20_21, RBP45B  gene RBP45B  go_function RNA binding|GO:0003723|11105760|ISS  product RNA-binding protein 45 (RBP45), putative  note RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP45C; RNA binding (TAIR:AT4G27000.1); Has 22877 Blast hits to 14020 proteins in 588 species: Archae - 14; Bacteria - 1484; Metazoa - 13266; Fungi - 2464; Plants - 3532; Viruses - 0; Other Eukaryotes - 2117 (source: NCBI BLink).  protein_id AT1G11650.2p  transcript_id AT1G11650.2  protein_id AT1G11650.2p  transcript_id AT1G11650.2  
At1g11650	chr1:003914895	0.0	W/3914895-3915155,3915428-3915893,3917021-3917079,3917167-3917301	AT1G11650.1 CDS  gene_syn ATRBP45B, F25C20.21, F25C20_21, RBP45B  gene RBP45B  go_function RNA binding|GO:0003723|11105760|ISS  product RNA-binding protein 45 (RBP45), putative  note RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: ATRBP45A (RNA-binding protein 45A); RNA binding (TAIR:AT5G54900.1); Has 16132 Blast hits to 10047 proteins in 553 species: Archae - 6; Bacteria - 1079; Metazoa - 9444; Fungi - 1649; Plants - 2578; Viruses - 0; Other Eukaryotes - 1376 (source: NCBI BLink).  protein_id AT1G11650.1p  transcript_id AT1G11650.1  protein_id AT1G11650.1p  transcript_id AT1G11650.1  
At1g11655	chr1:003919338	0.0	W/3919338-3919679	AT1G11655.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11655.1p  transcript_id AT1G11655.1  protein_id AT1G11655.1p  transcript_id AT1G11655.1  
At1g11660	chr1:003921056	0.0	W/3921056-3922228,3922382-3922594,3922732-3922827,3922885-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.1 CDS  gene_syn F25C20.19, F25C20_19  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product heat shock protein, putative  note heat shock protein, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSP91; ATP binding (TAIR:AT1G79930.1); Has 18340 Blast hits to 18232 proteins in 2790 species: Archae - 102; Bacteria - 6666; Metazoa - 2927; Fungi - 1006; Plants - 621; Viruses - 73; Other Eukaryotes - 6945 (source: NCBI BLink).  protein_id AT1G11660.1p  transcript_id AT1G11660.1  protein_id AT1G11660.1p  transcript_id AT1G11660.1  
At1g11660	chr1:003921056	0.0	W/3921056-3922228,3922382-3922594,3922732-3922827,3922915-3923025,3923184-3923375,3923491-3923637,3923721-3923849,3923981-3924111,3924248-3924347	AT1G11660.2 CDS  gene_syn F25C20.19, F25C20_19  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product heat shock protein, putative  note heat shock protein, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: ATP binding (TAIR:AT1G79920.2); Has 18271 Blast hits to 18162 proteins in 2788 species: Archae - 100; Bacteria - 6650; Metazoa - 2956; Fungi - 1002; Plants - 619; Viruses - 71; Other Eukaryotes - 6873 (source: NCBI BLink).  protein_id AT1G11660.2p  transcript_id AT1G11660.2  protein_id AT1G11660.2p  transcript_id AT1G11660.2  
At1g11670	chr1:003928520	0.0	C/3928520-3928582,3928700-3928786,3928887-3929005,3929096-3929334,3929437-3929493,3930276-3930907,3931168-3931482	AT1G11670.1 CDS  gene_syn F25C20.18, F25C20_18  go_component membrane|GO:0016020||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: N-terminal protein myristoylation, multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G61890.1); Has 6184 Blast hits to 6144 proteins in 1132 species: Archae - 136; Bacteria - 4008; Metazoa - 123; Fungi - 210; Plants - 728; Viruses - 0; Other Eukaryotes - 979 (source: NCBI BLink).  protein_id AT1G11670.1p  transcript_id AT1G11670.1  protein_id AT1G11670.1p  transcript_id AT1G11670.1  
At1g11680	chr1:003938925	0.0	W/3938925-3939398,3939593-3940585	AT1G11680.1 CDS  gene_syn CYP51, CYP51A2, CYP51G1, CYTOCHROME P450 51, CYTOCHROME P450 51A2, CYTOCHROME P450 51G1, EMB1738, F25C20.17, F25C20_17, embryo defective 1738  gene CYP51G1  function putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process sterol biosynthetic process|GO:0016126|11437378|TAS  go_process sterol biosynthetic process|GO:0016126|16169959|IMP  go_function sterol 14-demethylase activity|GO:0008398|16169959|TAS  go_function oxygen binding|GO:0019825||ISS  product CYP51G1 (CYTOCHROME P450 51G1); oxygen binding / sterol 14-demethylase  note CYTOCHROME P450 51G1 (CYP51G1); FUNCTIONS IN: oxygen binding, sterol 14-demethylase activity; INVOLVED IN: embryonic development ending in seed dormancy, sterol biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP707A3; (+)-abscisic acid 8 -hydroxylase/ oxygen binding (TAIR:AT5G45340.1); Has 21510 Blast hits to 21477 proteins in 1232 species: Archae - 42; Bacteria - 3195; Metazoa - 8844; Fungi - 3288; Plants - 4867; Viruses - 6; Other Eukaryotes - 1268 (source: NCBI BLink).  protein_id AT1G11680.1p  transcript_id AT1G11680.1  protein_id AT1G11680.1p  transcript_id AT1G11680.1  
At1g11684	chr1:003941103	0.0	C/3941103-3941300	AT1G11684.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G11684.1p  transcript_id AT1G11684.1  protein_id AT1G11684.1p  transcript_id AT1G11684.1  
At1g11690	chr1:003941469	0.0	W/3941469-3942212	AT1G11690.1 CDS  gene_syn F25C20.16, F25C20_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50660.1); Has 5187 Blast hits to 4089 proteins in 353 species: Archae - 92; Bacteria - 307; Metazoa - 2549; Fungi - 241; Plants - 189; Viruses - 7; Other Eukaryotes - 1802 (source: NCBI BLink).  protein_id AT1G11690.1p  transcript_id AT1G11690.1  protein_id AT1G11690.1p  transcript_id AT1G11690.1  
At1g11700	chr1:003945852	0.0	W/3945852-3946457	AT1G11700.1 CDS  gene_syn F25C20.15, F25C20_15  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61930.1); Has 197 Blast hits to 197 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G11700.1p  transcript_id AT1G11700.1  protein_id AT1G11700.1p  transcript_id AT1G11700.1  
At1g11710	chr1:003948886	0.0	W/3948886-3950859	AT1G11710.1 CDS  gene_syn F25C20.14, F25C20_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G01110.1); Has 19625 Blast hits to 5674 proteins in 176 species: Archae - 2; Bacteria - 23; Metazoa - 403; Fungi - 262; Plants - 18143; Viruses - 0; Other Eukaryotes - 792 (source: NCBI BLink).  protein_id AT1G11710.1p  transcript_id AT1G11710.1  protein_id AT1G11710.1p  transcript_id AT1G11710.1  
At1g11720	chr1:003952511	0.0	W/3952511-3953618,3953739-3953953,3954080-3954353,3954436-3954611,3954691-3954798,3954886-3954995,3955094-3955199,3955307-3955477,3955597-3955725,3955811-3955993,3956072-3956203,3956297-3956408,3956504-3956627,3956711-3956840	AT1G11720.1 CDS  gene_syn ATSS3, F25C20.13, F25C20_13, STARCH SYNTHASE III, starch synthase 3  gene ATSS3  function Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD).  go_component chloroplast|GO:0009507|18431481|IDA  go_process starch biosynthetic process|GO:0019252|15908598|IMP  go_function starch synthase activity|GO:0009011|15908598|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups  note starch synthase 3 (ATSS3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, starch synthase activity; INVOLVED IN: starch biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase III (InterPro:IPR009756), Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase catalytic region (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: ATSS4; transferase, transferring glycosyl groups (TAIR:AT4G18240.1); Has 5777 Blast hits to 5716 proteins in 2081 species: Archae - 101; Bacteria - 2070; Metazoa - 18; Fungi - 88; Plants - 2825; Viruses - 1; Other Eukaryotes - 674 (source: NCBI BLink).  protein_id AT1G11720.1p  transcript_id AT1G11720.1  protein_id AT1G11720.1p  transcript_id AT1G11720.1  
At1g11730	chr1:003957473	0.0	W/3957473-3957588,3958169-3958253,3958333-3958361,3958458-3958651,3958735-3958798,3958905-3958977,3959063-3959183,3959266-3959353,3959457-3959582,3959682-3959791,3959965-3960113	AT1G11730.1 CDS  gene_syn F25C20.12, F25C20_12  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G05170.2); Has 1053 Blast hits to 1050 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G11730.1p  transcript_id AT1G11730.1  protein_id AT1G11730.1p  transcript_id AT1G11730.1  
At1g11735	chr1:003961348	0.0	C/3961348-3961464	AT1G11735.1 miRNA  gene_syn MICRORNA171B, MIR171B  gene MIR171B  function Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGAGCCGUGCCAAUAUCACG  product MIR171B (MICRORNA171B); miRNA  transcript_id AT1G11735.1  
At1g11740	chr1:003963317	0.0	C/3963317-3963563,3963632-3963662,3964880-3965210,3965559-3966824	AT1G11740.1 CDS  gene_syn F25C20.11, F25C20_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62050.1); Has 773 Blast hits to 707 proteins in 96 species: Archae - 4; Bacteria - 18; Metazoa - 464; Fungi - 21; Plants - 186; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G11740.1p  transcript_id AT1G11740.1  protein_id AT1G11740.1p  transcript_id AT1G11740.1  
At1g11750	chr1:003967609	0.0	W/3967609-3967703,3967786-3967847,3968007-3968061,3968347-3968548,3968632-3968697,3968784-3968924,3969028-3969081,3969208-3969300,3969488-3969535	AT1G11750.1 CDS  gene_syn ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT, CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CLPP6, F25C20.10, F25C20_10, NCLPP1, NCLPP6, NUCLEAR-ENCODED CLPP 1  gene CLPP6  function One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid stroma|GO:0009532|14593120|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast thylakoid|GO:0009534|11278690|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  go_component chloroplast stroma|GO:0009570|7580259|IDA  go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA  go_process chloroplast organization|GO:0009658|16980539|IMP  go_process photosynthesis|GO:0015979|16980539|IMP  product CLPP6; serine-type endopeptidase  note CLPP6; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase (TAIR:AT1G02560.1); Has 9008 Blast hits to 9004 proteins in 1698 species: Archae - 2; Bacteria - 4610; Metazoa - 115; Fungi - 50; Plants - 689; Viruses - 75; Other Eukaryotes - 3467 (source: NCBI BLink).  protein_id AT1G11750.1p  transcript_id AT1G11750.1  protein_id AT1G11750.1p  transcript_id AT1G11750.1  
At1g11755	chr1:003969987	0.0	C/3969987-3969994,3970208-3970290,3970379-3970475,3970556-3970751,3970882-3970943,3971013-3971283,3971441-3971488	AT1G11755.1 CDS  gene_syn LEAF WILTING 1, LEW1  gene LEW1  function Encodes a cis-prenyltransferase, involved in dolichol biosynthesis. Wilted leaves in mutants due to cell membrane lesions. Mutants have increased drought tolerance, but hypersensitve to dark stress.  go_process protein amino acid N-linked glycosylation|GO:0006487|18612099|IMP  go_process response to water deprivation|GO:0009414|18612099|IMP  go_process response to low light intensity stimulus|GO:0009645|18612099|IMP  go_process dolichol biosynthetic process|GO:0019408|18612099|IMP  go_process endoplasmic reticulum unfolded protein response|GO:0030968|18612099|IMP  go_function dehydrodolichyl diphosphate synthase activity|GO:0045547|18612099|IDA  product LEW1 (LEAF WILTING 1); dehydrodolichyl diphosphate synthase  note LEAF WILTING 1 (LEW1); FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: endoplasmic reticulum unfolded protein response, dolichol biosynthetic process, response to water deprivation, protein amino acid N-linked glycosylation, response to low light intensity stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); Has 122 Blast hits to 122 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 37; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11755.1p  transcript_id AT1G11755.1  protein_id AT1G11755.1p  transcript_id AT1G11755.1  
At1g11760	chr1:003972356	0.0	C/3972356-3972811	AT1G11760.1 CDS  gene_syn F25C20.9, F25C20_9  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11760.1p  transcript_id AT1G11760.1  protein_id AT1G11760.1p  transcript_id AT1G11760.1  
At1g11765	chr1:003973908	0.0	W/3973908-3974321	AT1G11765.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product S1 self-incompatibility protein-related  note S1 self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT3G26880.1); Has 68 Blast hits to 68 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11765.1p  transcript_id AT1G11765.1  protein_id AT1G11765.1p  transcript_id AT1G11765.1  
At1g11770	chr1:003975679	0.0	W/3975679-3977289	AT1G11770.1 CDS  gene_syn F25C20.7, F25C20_7  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD binding / catalytic/ electron carrier/ oxidoreductase  note FAD binding / catalytic/ electron carrier/ oxidoreductase; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: ATSEC1A; FAD binding / catalytic/ electron carrier/ oxidoreductase (TAIR:AT1G01980.1); Has 2756 Blast hits to 2626 proteins in 438 species: Archae - 12; Bacteria - 1140; Metazoa - 0; Fungi - 1082; Plants - 359; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G11770.1p  transcript_id AT1G11770.1  protein_id AT1G11770.1p  transcript_id AT1G11770.1  
At1g11780	chr1:003977614	0.0	C/3977614-3977753,3977864-3977985,3978070-3978136,3978223-3978361,3978449-3978762,3978843-3978991,3979071-3979177	AT1G11780.1 CDS  gene_syn F25C20.6, F25C20_6  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase (TAIR:AT3G14160.1); Has 774 Blast hits to 774 proteins in 368 species: Archae - 0; Bacteria - 507; Metazoa - 84; Fungi - 62; Plants - 33; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).  protein_id AT1G11780.1p  transcript_id AT1G11780.1  protein_id AT1G11780.1p  transcript_id AT1G11780.1  
At1g11785	chr1:003980148	0.0	C/3980148-3980258,3980873-3980902	AT1G11785.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11785.1p  transcript_id AT1G11785.1  protein_id AT1G11785.1p  transcript_id AT1G11785.1  
At1g11790	chr1:003981476	0.0	W/3981476-3981740,3983204-3983271,3983358-3983450,3983541-3983741,3983825-3983905,3983983-3984078,3984258-3984335,3984419-3984508,3984595-3984662,3984742-3984823,3984906-3984962	AT1G11790.1 CDS  gene_syn ADT1, F25C20.4, F25C20_4, arogenate dehydratase 1  gene ADT1  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_process metabolic process|GO:0008152||IEA  go_process L-phenylalanine biosynthetic process|GO:0009094||IEA  go_component chloroplast|GO:0009507|19136569|IDA  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase  note arogenate dehydratase 1 (ADT1); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Amino acid-binding ACT (InterPro:IPR002912), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: ADT2 (arogenate dehydratase 2); arogenate dehydratase/ prephenate dehydratase (TAIR:AT3G07630.2); Has 5032 Blast hits to 5032 proteins in 1198 species: Archae - 120; Bacteria - 2081; Metazoa - 2; Fungi - 71; Plants - 132; Viruses - 0; Other Eukaryotes - 2626 (source: NCBI BLink).  protein_id AT1G11790.1p  transcript_id AT1G11790.1  protein_id AT1G11790.1p  transcript_id AT1G11790.1  
At1g11790	chr1:003981476	0.0	W/3981476-3981740,3983204-3983271,3983358-3983450,3983541-3983741,3983825-3983905,3983983-3984078,3984258-3984335,3984419-3984562	AT1G11790.2 CDS  gene_syn ADT1, F25C20.4, F25C20_4, arogenate dehydratase 1  gene ADT1  function Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identi& 64257;ed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].  go_process L-phenylalanine biosynthetic process|GO:0009094||IEA  go_component chloroplast|GO:0009507|19136569|IDA  go_process L-phenylalanine biosynthetic process|GO:0009094||ISS  go_function prephenate dehydratase activity|GO:0004664||ISS  go_function arogenate dehydratase activity|GO:0047769|17726025|IDA  product ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase  note arogenate dehydratase 1 (ADT1); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: ADT2 (arogenate dehydratase 2); arogenate dehydratase/ prephenate dehydratase (TAIR:AT3G07630.2); Has 4872 Blast hits to 4872 proteins in 1191 species: Archae - 120; Bacteria - 2063; Metazoa - 0; Fungi - 69; Plants - 132; Viruses - 0; Other Eukaryotes - 2488 (source: NCBI BLink).  protein_id AT1G11790.2p  transcript_id AT1G11790.2  protein_id AT1G11790.2p  transcript_id AT1G11790.2  
At1g11800	chr1:003985520	0.0	C/3985520-3986104,3986199-3986309,3986403-3986551,3986783-3987263	AT1G11800.1 CDS  gene_syn F25C20.3, F25C20_3  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Zinc finger, RanBP2-type (InterPro:IPR001876); Has 273 Blast hits to 263 proteins in 68 species: Archae - 0; Bacteria - 12; Metazoa - 134; Fungi - 10; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G11800.1p  transcript_id AT1G11800.1  protein_id AT1G11800.1p  transcript_id AT1G11800.1  
At1g11803	chr1:003987755	0.0	C/3987755-3988030	AT1G11803.1 pseudogenic_transcript  pseudo  note pseudogene, auxin responsive protein, blastp match of 74% identity and 1.2e-15 P-value to GP|3043536|dbj|BAA25434.1||AB000708 SAUR {Raphanus sativus}  
At1g11806	chr1:003988346	0.0	W/3988346-3989398	AT1G11806.1 pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein, likely a tandem duplication of the immediatly downstream hypothetical protein which has since degenerated.  
At1g11810	chr1:003989763	0.0	W/3989763-3990896	AT1G11810.1 CDS  gene_syn F25C20.2, F25C20_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G13830.1); Has 490 Blast hits to 473 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 490; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11810.1p  transcript_id AT1G11810.1  protein_id AT1G11810.1p  transcript_id AT1G11810.1  
At1g11820	chr1:003991259	0.0	C/3991259-3991276,3991388-3991415,3991988-3993026,3993258-3993327	AT1G11820.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative (TAIR:AT2G01630.2); Has 1386 Blast hits to 1376 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1383; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G11820.1p  transcript_id AT1G11820.1  protein_id AT1G11820.1p  transcript_id AT1G11820.1  
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.1 CDS  gene_syn ATGLX1, F12F1.32, F12F1_32, GLYOXALASE I, GLYOXALASE I HOMOLOG  gene ATGLX1  function Encodes a glyoxalase I homolog ATGLX1.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding  note GLYOXALASE I HOMOLOG (ATGLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.1); Has 5848 Blast hits to 3462 proteins in 977 species: Archae - 63; Bacteria - 3233; Metazoa - 404; Fungi - 180; Plants - 152; Viruses - 0; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT1G11840.1p  transcript_id AT1G11840.1  protein_id AT1G11840.1p  transcript_id AT1G11840.1  
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.2 CDS  gene_syn ATGLX1, F12F1.32, F12F1_32, GLYOXALASE I, GLYOXALASE I HOMOLOG  gene ATGLX1  function Encodes a glyoxalase I homolog ATGLX1.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding  note GLYOXALASE I HOMOLOG (ATGLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.1); Has 5848 Blast hits to 3462 proteins in 977 species: Archae - 63; Bacteria - 3233; Metazoa - 404; Fungi - 180; Plants - 152; Viruses - 0; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT1G11840.2p  transcript_id AT1G11840.2  protein_id AT1G11840.2p  transcript_id AT1G11840.2  
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.3 CDS  gene_syn ATGLX1, F12F1.32, F12F1_32, GLYOXALASE I, GLYOXALASE I HOMOLOG  gene ATGLX1  function Encodes a glyoxalase I homolog ATGLX1.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding  note GLYOXALASE I HOMOLOG (ATGLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.1); Has 5848 Blast hits to 3462 proteins in 977 species: Archae - 63; Bacteria - 3233; Metazoa - 404; Fungi - 180; Plants - 152; Viruses - 0; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT1G11840.3p  transcript_id AT1G11840.3  protein_id AT1G11840.3p  transcript_id AT1G11840.3  
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997239-3997391,3997477-3997518	AT1G11840.4 CDS  gene_syn ATGLX1, F12F1.32, F12F1_32, GLYOXALASE I, GLYOXALASE I HOMOLOG  gene ATGLX1  function Encodes a glyoxalase I homolog ATGLX1.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding  note GLYOXALASE I HOMOLOG (ATGLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.1); Has 5848 Blast hits to 3462 proteins in 977 species: Archae - 63; Bacteria - 3233; Metazoa - 404; Fungi - 180; Plants - 152; Viruses - 0; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT1G11840.4p  transcript_id AT1G11840.4  protein_id AT1G11840.4p  transcript_id AT1G11840.4  
At1g11840	chr1:003996045	0.0	W/3996045-3996142,3996238-3996362,3996443-3996507,3996599-3996811,3996890-3996937,3997034-3997141,3997249-3997290	AT1G11840.5 CDS  gene_syn ATGLX1, F12F1.32, F12F1_32, GLYOXALASE I, GLYOXALASE I HOMOLOG  gene ATGLX1  function Encodes a glyoxalase I homolog ATGLX1.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function lactoylglutathione lyase activity|GO:0004462||IEA  go_function metal ion binding|GO:0046872||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase/ metal ion binding  note GLYOXALASE I HOMOLOG (ATGLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase, putative / glyoxalase I, putative (TAIR:AT1G67280.1); Has 5506 Blast hits to 3438 proteins in 965 species: Archae - 65; Bacteria - 3031; Metazoa - 404; Fungi - 197; Plants - 210; Viruses - 0; Other Eukaryotes - 1599 (source: NCBI BLink).  protein_id AT1G11840.5p  transcript_id AT1G11840.5  protein_id AT1G11840.5p  transcript_id AT1G11840.5  
At1g11850	chr1:003999237	0.0	W/3999237-3999408,3999535-3999563	AT1G11850.3 CDS  gene_syn F12F1.31, F12F1_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 18 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11850.3p  transcript_id AT1G11850.3  protein_id AT1G11850.3p  transcript_id AT1G11850.3  
At1g11850	chr1:003999237	0.0	W/3999237-3999471,3999517-3999563	AT1G11850.1 CDS  gene_syn F12F1.31, F12F1_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 36117 Blast hits to 7699 proteins in 680 species: Archae - 46; Bacteria - 12408; Metazoa - 12818; Fungi - 1456; Plants - 6002; Viruses - 463; Other Eukaryotes - 2924 (source: NCBI BLink).  protein_id AT1G11850.1p  transcript_id AT1G11850.1  protein_id AT1G11850.1p  transcript_id AT1G11850.1  
At1g11850	chr1:003999237	0.0	W/3999237-3999477,3999517-3999563	AT1G11850.4 CDS  gene_syn F12F1.31, F12F1_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 48106 Blast hits to 9405 proteins in 759 species: Archae - 69; Bacteria - 19990; Metazoa - 15033; Fungi - 1939; Plants - 6451; Viruses - 555; Other Eukaryotes - 4069 (source: NCBI BLink).  protein_id AT1G11850.4p  transcript_id AT1G11850.4  protein_id AT1G11850.4p  transcript_id AT1G11850.4  
At1g11850	chr1:003999237	0.0	W/3999237-3999563	AT1G11850.2 CDS  gene_syn F12F1.31, F12F1_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 77041 Blast hits to 15434 proteins in 1037 species: Archae - 102; Bacteria - 34294; Metazoa - 21656; Fungi - 3622; Plants - 7730; Viruses - 781; Other Eukaryotes - 8856 (source: NCBI BLink).  protein_id AT1G11850.2p  transcript_id AT1G11850.2  protein_id AT1G11850.2p  transcript_id AT1G11850.2  
At1g11860	chr1:004001801	0.0	W/4001801-4002361,4002457-4002575,4002699-4003245	AT1G11860.1 CDS  gene_syn F12F1.30, F12F1_30  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function aminomethyltransferase activity|GO:0004047||IEA  go_function aminomethyltransferase activity|GO:0004047||ISS  product aminomethyltransferase, putative  note aminomethyltransferase, putative; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: aminomethyltransferase (TAIR:AT1G60990.3); Has 16017 Blast hits to 16014 proteins in 1169 species: Archae - 69; Bacteria - 3430; Metazoa - 374; Fungi - 107; Plants - 67; Viruses - 0; Other Eukaryotes - 11970 (source: NCBI BLink).  protein_id AT1G11860.1p  transcript_id AT1G11860.1  protein_id AT1G11860.1p  transcript_id AT1G11860.1  
At1g11860	chr1:004001801	0.0	W/4001801-4002361,4002457-4002575,4002699-4003245	AT1G11860.2 CDS  gene_syn F12F1.30, F12F1_30  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function aminomethyltransferase activity|GO:0004047||IEA  go_function aminomethyltransferase activity|GO:0004047||ISS  product aminomethyltransferase, putative  note aminomethyltransferase, putative; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: aminomethyltransferase (TAIR:AT1G60990.3); Has 16017 Blast hits to 16014 proteins in 1169 species: Archae - 69; Bacteria - 3430; Metazoa - 374; Fungi - 107; Plants - 67; Viruses - 0; Other Eukaryotes - 11970 (source: NCBI BLink).  protein_id AT1G11860.2p  transcript_id AT1G11860.2  protein_id AT1G11860.2p  transcript_id AT1G11860.2  
At1g11870	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006281-4006556	AT1G11870.2 CDS  gene_syn ATSRS, F12F1.29, F12F1_29, OVA7, SERYL-TRNA SYNTHETASE, SRS, ovule abortion 7  gene SRS  function Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16107332|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16107332|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process seryl-tRNA aminoacylation|GO:0006434||ISS  go_process mitochondrion organization|GO:0007005|16107332|TAS  go_process chloroplast organization|GO:0009658|16107332|TAS  go_process tRNA aminoacylation|GO:0043039||TAS  go_process ovule development|GO:0048481|16297076|IMP  go_function serine-tRNA ligase activity|GO:0004828|16107332|ISS  go_function serine-tRNA ligase activity|GO:0004828||ISS  product SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase  note SERYL-TRNA SYNTHETASE (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, tRNA aminoacylation, seryl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin (InterPro:IPR000626), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 8976 Blast hits to 8972 proteins in 1644 species: Archae - 145; Bacteria - 3785; Metazoa - 338; Fungi - 197; Plants - 71; Viruses - 0; Other Eukaryotes - 4440 (source: NCBI BLink).  protein_id AT1G11870.2p  transcript_id AT1G11870.2  protein_id AT1G11870.2p  transcript_id AT1G11870.2  
At1g11870	chr1:004003895	0.0	W/4003895-4004099,4004170-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006117-4006150	AT1G11870.3 CDS  gene_syn ATSRS, F12F1.29, F12F1_29, OVA7, SERYL-TRNA SYNTHETASE, SRS, ovule abortion 7  gene SRS  function Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16107332|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16107332|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process seryl-tRNA aminoacylation|GO:0006434||ISS  go_process mitochondrion organization|GO:0007005|16107332|TAS  go_process chloroplast organization|GO:0009658|16107332|TAS  go_process tRNA aminoacylation|GO:0043039||TAS  go_process ovule development|GO:0048481|16297076|IMP  go_function serine-tRNA ligase activity|GO:0004828|16107332|ISS  go_function serine-tRNA ligase activity|GO:0004828||ISS  product SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase  note SERYL-TRNA SYNTHETASE (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, tRNA aminoacylation, seryl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin (InterPro:IPR000626), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 8081 Blast hits to 8077 proteins in 1633 species: Archae - 142; Bacteria - 3619; Metazoa - 269; Fungi - 193; Plants - 66; Viruses - 0; Other Eukaryotes - 3792 (source: NCBI BLink).  protein_id AT1G11870.3p  transcript_id AT1G11870.3  protein_id AT1G11870.3p  transcript_id AT1G11870.3  
At1g11870	chr1:004003895	0.0	W/4003895-4004099,4004176-4004321,4004563-4004656,4004732-4004880,4004979-4005071,4005348-4005527,4005614-4005780,4005887-4006021,4006097-4006190,4006281-4006556	AT1G11870.1 CDS  gene_syn ATSRS, F12F1.29, F12F1_29, OVA7, SERYL-TRNA SYNTHETASE, SRS, ovule abortion 7  gene SRS  function Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|16107332|IDA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16107332|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process seryl-tRNA aminoacylation|GO:0006434||ISS  go_process mitochondrion organization|GO:0007005|16107332|TAS  go_process chloroplast organization|GO:0009658|16107332|TAS  go_process tRNA aminoacylation|GO:0043039||TAS  go_process ovule development|GO:0048481|16297076|IMP  go_function serine-tRNA ligase activity|GO:0004828|16107332|ISS  go_function serine-tRNA ligase activity|GO:0004828||ISS  product SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase  note SERYL-TRNA SYNTHETASE (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, tRNA aminoacylation, seryl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin (InterPro:IPR000626), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 8974 Blast hits to 8970 proteins in 1644 species: Archae - 145; Bacteria - 3787; Metazoa - 336; Fungi - 197; Plants - 71; Viruses - 0; Other Eukaryotes - 4438 (source: NCBI BLink).  protein_id AT1G11870.1p  transcript_id AT1G11870.1  protein_id AT1G11870.1p  transcript_id AT1G11870.1  
At1g11880	chr1:004007909	0.0	C/4007909-4008073,4008177-4008337,4008412-4008641,4008725-4008903,4009270-4009465,4009578-4009670,4009799-4009904,4009988-4010327	AT1G11880.1 CDS  gene_syn F12F1.28, F12F1_28  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||IEA  product transferase, transferring hexosyl groups  note transferase, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mannosyltransferase, PIG-V (InterPro:IPR007315); Has 346 Blast hits to 328 proteins in 162 species: Archae - 2; Bacteria - 58; Metazoa - 114; Fungi - 104; Plants - 17; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G11880.1p  transcript_id AT1G11880.1  protein_id AT1G11880.1p  transcript_id AT1G11880.1  
At1g11890	chr1:004011509	0.0	W/4011509-4011696,4011984-4012144,4012236-4012382,4012531-4012607,4012752-4012835	AT1G11890.1 CDS  gene_syn ATSEC22, F12F1.27, F12F1_27, SEC22, SECRETION 22  gene SEC22  function member of SEC22 Gene Family  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_component endoplasmic reticulum|GO:0005783|16244155|IDA  go_component Golgi apparatus|GO:0005794|16244155|IDA  go_component membrane|GO:0016020||ISS  go_process vesicle-mediated transport|GO:0016192||ISS  go_function transporter activity|GO:0005215||ISS  product SEC22; transporter  note SEC22; FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endoplasmic reticulum, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: vesicle transport protein-related (TAIR:AT5G52270.1); Has 1114 Blast hits to 1113 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 222; Plants - 255; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).  protein_id AT1G11890.1p  transcript_id AT1G11890.1  protein_id AT1G11890.1p  transcript_id AT1G11890.1  
At1g11900	chr1:004013166	0.0	C/4013166-4014209,4014571-4014630	AT1G11900.1 CDS  gene_syn F12F1.26, F12F1_26  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G06920.1); Has 14124 Blast hits to 4790 proteins in 158 species: Archae - 3; Bacteria - 6; Metazoa - 177; Fungi - 194; Plants - 13150; Viruses - 0; Other Eukaryotes - 594 (source: NCBI BLink).  protein_id AT1G11900.1p  transcript_id AT1G11900.1  protein_id AT1G11900.1p  transcript_id AT1G11900.1  
At1g11905	chr1:004014958	0.0	W/4014958-4015240,4015636-4015666,4015874-4016222	AT1G11905.2 CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42570.1).  protein_id AT1G11905.2p  transcript_id AT1G11905.2  protein_id AT1G11905.2p  transcript_id AT1G11905.2  
At1g11905	chr1:004014958	0.0	W/4014958-4015240,4015840-4016222	AT1G11905.1 CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42570.1); Has 65 Blast hits to 65 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11905.1p  transcript_id AT1G11905.1  protein_id AT1G11905.1p  transcript_id AT1G11905.1  
At1g11910	chr1:004017119	0.0	C/4017119-4017203,4017290-4017378,4017469-4017588,4017686-4017842,4017960-4018024,4018125-4018238,4018330-4018394,4018527-4018566,4018653-4018821,4018905-4019017,4019102-4019196,4019382-4019442,4019527-4019874	AT1G11910.1 CDS  gene_syn F12F1.24, F12F1_24  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT1G62290.2); Has 5898 Blast hits to 4016 proteins in 342 species: Archae - 0; Bacteria - 2; Metazoa - 3476; Fungi - 1208; Plants - 429; Viruses - 0; Other Eukaryotes - 783 (source: NCBI BLink).  protein_id AT1G11910.1p  transcript_id AT1G11910.1  protein_id AT1G11910.1p  transcript_id AT1G11910.1  
At1g11915	chr1:004021830	0.0	W/4021830-4022646,4022792-4022833,4022954-4023084	AT1G11915.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 109 Blast hits to 109 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11915.1p  transcript_id AT1G11915.1  protein_id AT1G11915.1p  transcript_id AT1G11915.1  
At1g11920	chr1:004023667	0.0	C/4023667-4023888,4023995-4024133,4024223-4024326,4024408-4025097	AT1G11920.1 CDS  gene_syn F12F1.22, F12F1_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT4G22080.1); Has 932 Blast hits to 927 proteins in 163 species: Archae - 0; Bacteria - 412; Metazoa - 0; Fungi - 116; Plants - 395; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G11920.1p  transcript_id AT1G11920.1  protein_id AT1G11920.1p  transcript_id AT1G11920.1  
At1g11925	chr1:004026195	0.0	C/4026195-4026617	AT1G11925.1 CDS  function Encodes a Stigma-specific Stig1 family protein  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Stigma-specific protein Stig1 (InterPro:IPR006969); BEST Arabidopsis thaliana protein match is: stigma-specific Stig1 family protein (TAIR:AT1G50720.1); Has 160 Blast hits to 100 proteins in 23 species: Archae - 0; Bacteria - 80; Metazoa - 3; Fungi - 8; Plants - 64; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G11925.1p  transcript_id AT1G11925.1  protein_id AT1G11925.1p  transcript_id AT1G11925.1  
At1g11930	chr1:004028783	0.0	W/4028783-4029043,4029142-4029208,4029324-4029370,4029628-4029715,4029818-4029951,4030041-4030139,4030221-4030298	AT1G11930.1 CDS  gene_syn F12F1.20, F12F1_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function pyridoxal phosphate binding|GO:0030170||ISS  product alanine racemase family protein  note alanine racemase family protein; FUNCTIONS IN: pyridoxal phosphate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: pyridoxal phosphate binding (TAIR:AT4G26860.1); Has 4934 Blast hits to 4934 proteins in 1278 species: Archae - 14; Bacteria - 2203; Metazoa - 109; Fungi - 88; Plants - 34; Viruses - 0; Other Eukaryotes - 2486 (source: NCBI BLink).  protein_id AT1G11930.1p  transcript_id AT1G11930.1  protein_id AT1G11930.1p  transcript_id AT1G11930.1  
At1g11930	chr1:004028783	0.0	W/4028783-4029043,4029142-4029208,4029324-4029370,4029628-4029715,4029818-4029951,4030041-4030139,4030227-4030298	AT1G11930.2 CDS  gene_syn F12F1.20, F12F1_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function pyridoxal phosphate binding|GO:0030170||ISS  product alanine racemase family protein  note alanine racemase family protein; FUNCTIONS IN: pyridoxal phosphate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: pyridoxal phosphate binding (TAIR:AT4G26860.1); Has 5031 Blast hits to 5031 proteins in 1279 species: Archae - 14; Bacteria - 2215; Metazoa - 109; Fungi - 88; Plants - 34; Viruses - 0; Other Eukaryotes - 2571 (source: NCBI BLink).  protein_id AT1G11930.2p  transcript_id AT1G11930.2  protein_id AT1G11930.2p  transcript_id AT1G11930.2  
At1g11940	chr1:004031768	0.0	C/4031768-4031932,4032020-4032166,4032258-4032314,4032506-4032547,4032648-4032728,4032876-4032957,4033088-4033159,4033284-4033384,4033460-4033576,4033659-4033946	AT1G11940.1 CDS  gene_syn F12F1.19, F12F1_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF266, plant (InterPro:IPR004949); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62305.1); Has 329 Blast hits to 329 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G11940.1p  transcript_id AT1G11940.1  protein_id AT1G11940.1p  transcript_id AT1G11940.1  
At1g11950	chr1:004034747	0.0	C/4034747-4034821,4034926-4035045,4035126-4035211,4035294-4035366,4035442-4035723,4035804-4036133,4036212-4036908,4036994-4037057,4037134-4037266,4037377-4037476,4037557-4037672,4037759-4038310	AT1G11950.1 CDS  gene_syn F12F1.18, F12F1_18  go_function transcription factor activity|GO:0003700||ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1); Has 609 Blast hits to 529 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 23; Plants - 176; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).  protein_id AT1G11950.1p  transcript_id AT1G11950.1  protein_id AT1G11950.1p  transcript_id AT1G11950.1  
At1g11960	chr1:004039871	0.0	C/4039871-4040131,4040266-4040499,4040671-4040995,4041082-4041327,4041407-4041747,4041827-4041907,4041991-4042110,4042193-4042294,4042367-4042502,4042581-4042736,4042830-4043143	AT1G11960.1 CDS  gene_syn F12F1.17, F12F1_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT1G62320.1); Has 746 Blast hits to 706 proteins in 111 species: Archae - 0; Bacteria - 4; Metazoa - 131; Fungi - 370; Plants - 224; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G11960.1p  transcript_id AT1G11960.1  protein_id AT1G11960.1p  transcript_id AT1G11960.1  
At1g11970	chr1:004044370	0.0	W/4044370-4044669	AT1G11970.1 CDS  gene_syn F12F1.16, F12F1_16  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); Has 216 Blast hits to 216 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 14; Plants - 69; Viruses - 1; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G11970.1p  transcript_id AT1G11970.1  protein_id AT1G11970.1p  transcript_id AT1G11970.1  
At1g11980	chr1:004045619	0.0	W/4045619-4045855	AT1G11980.1 CDS  gene_syn F12F1.15, F12F1_15, RUB3, UBIQUITIN-RELATED PROTEIN 3  gene RUB3  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product RUB3 (UBIQUITIN-RELATED PROTEIN 3)  note UBIQUITIN-RELATED PROTEIN 3 (RUB3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: RUB1 (RELATED TO UBIQUITIN 1); protein binding (TAIR:AT1G31340.1); Has 7850 Blast hits to 4332 proteins in 581 species: Archae - 0; Bacteria - 4; Metazoa - 3596; Fungi - 873; Plants - 1659; Viruses - 161; Other Eukaryotes - 1557 (source: NCBI BLink).  protein_id AT1G11980.1p  transcript_id AT1G11980.1  protein_id AT1G11980.1p  transcript_id AT1G11980.1  
At1g11990	chr1:004046246	0.0	C/4046246-4046551,4046637-4046877,4046965-4047110,4047222-4047323,4047401-4047544,4047635-4047755,4047862-4047950,4048036-4048097,4048175-4048313,4048386-4048478,4048731-4049060	AT1G11990.1 CDS  gene_syn F12F1.14, F12F1_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62330.1); Has 426 Blast hits to 420 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 426; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G11990.1p  transcript_id AT1G11990.1  protein_id AT1G11990.1p  transcript_id AT1G11990.1  
At1g12000	chr1:004050159	0.0	C/4050159-4050232,4050322-4050390,4050474-4050518,4050604-4050688,4050797-4050908,4051023-4051138,4051245-4051415,4051516-4051647,4051874-4051962,4052052-4052115,4052286-4052391,4052530-4052636,4052733-4052786,4052916-4053037,4053138-4053296,4053532-4053727	AT1G12000.1 CDS  gene_syn F12F1.13, F12F1_13  go_component cell wall|GO:0005618|16287169|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex|GO:0010318||ISS  go_process glycolysis|GO:0006096||ISS  go_function diphosphate-fructose-6-phosphate 1-phosphotransferase activity|GO:0047334||ISS  product pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative  note pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: MEE51 (maternal effect embryo arrest 51); diphosphate-fructose-6-phosphate 1-phosphotransferase (TAIR:AT4G04040.1); Has 3585 Blast hits to 3515 proteins in 1006 species: Archae - 20; Bacteria - 2321; Metazoa - 52; Fungi - 90; Plants - 237; Viruses - 2; Other Eukaryotes - 863 (source: NCBI BLink).  protein_id AT1G12000.1p  transcript_id AT1G12000.1  protein_id AT1G12000.1p  transcript_id AT1G12000.1  
At1g12010	chr1:004056274	0.0	W/4056274-4056387,4056562-4056788,4056877-4057210,4057383-4057670	AT1G12010.1 CDS  gene_syn F12F1.12, F12F1_12  function encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 1-aminocyclopropane-1-carboxylate oxidase activity|GO:0009815||ISS  product 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative  note 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ACO2 (ACC OXIDASE 2); 1-aminocyclopropane-1-carboxylate oxidase (TAIR:AT1G62380.1); Has 5877 Blast hits to 5855 proteins in 681 species: Archae - 0; Bacteria - 707; Metazoa - 112; Fungi - 650; Plants - 3087; Viruses - 0; Other Eukaryotes - 1321 (source: NCBI BLink).  protein_id AT1G12010.1p  transcript_id AT1G12010.1  protein_id AT1G12010.1p  transcript_id AT1G12010.1  
At1g12013	chr1:004058287	0.0	W/4058287-4058416	AT1G12013.1 snoRNA  gene_syn SMALL NUCLEOLAR RNA 111, SNOR111  gene SNOR111  function Encodes a H/ACA-box snoRNA (snoR111). Gb: AJ505682  go_component box H/ACA snoRNP complex|GO:0031429||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product SNOR111 (SMALL NUCLEOLAR RNA 111); snoRNA  transcript_id AT1G12013.1  
At1g12015	chr1:004058487	0.0	W/4058487-4058576	AT1G12015.1 snoRNA  gene_syn 51018.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G12015.1  
At1g12020	chr1:004062625	0.0	C/4062625-4063305	AT1G12020.1 CDS  gene_syn F12F1.11, F12F1_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 50 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G12020.1p  transcript_id AT1G12020.1  protein_id AT1G12020.1p  transcript_id AT1G12020.1  
At1g12030	chr1:004064751	0.0	C/4064751-4065262,4065944-4066319	AT1G12030.1 CDS  gene_syn F12F1.10, F12F1_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: pollen tube, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62420.1); Has 213 Blast hits to 213 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 211; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G12030.1p  transcript_id AT1G12030.1  protein_id AT1G12030.1p  transcript_id AT1G12030.1  
At1g12040	chr1:004070160	0.0	W/4070160-4072394	AT1G12040.1 CDS  gene_syn F12F1.9, F12F1_9, LEUCINE-RICH REPEAT/EXTENSIN 1, LRX1  gene LRX1  function encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper.  go_component plant-type cell wall|GO:0009505|11331608|IDA  go_process cell morphogenesis involved in differentiation|GO:0000904|11331608|IMP  go_process unidimensional cell growth|GO:0009826|11331608|IMP  go_process trichoblast differentiation|GO:0010054|11331608|IMP  go_function structural constituent of cell wall|GO:0005199|12644681|ISS  go_function protein binding|GO:0005515|12644681|ISS  go_function histidine phosphotransfer kinase activity|GO:0009927||NAS  product LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); histidine phosphotransfer kinase/ protein binding / structural constituent of cell wall  note LEUCINE-RICH REPEAT/EXTENSIN 1 (LRX1); FUNCTIONS IN: structural constituent of cell wall, protein binding, histidine phosphotransfer kinase activity; INVOLVED IN: trichoblast differentiation, cell morphogenesis involved in differentiation, unidimensional cell growth; LOCATED IN: plant-type cell wall; EXPRESSED IN: trichoblast, root hair, root; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Extensin-like region (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2); protein binding / structural constituent of cell wall (TAIR:AT1G62440.1); Has 302149 Blast hits to 77651 proteins in 2210 species: Archae - 768; Bacteria - 46896; Metazoa - 113704; Fungi - 36867; Plants - 60789; Viruses - 7191; Other Eukaryotes - 35934 (source: NCBI BLink).  protein_id AT1G12040.1p  transcript_id AT1G12040.1  protein_id AT1G12040.1p  transcript_id AT1G12040.1  
At1g12050	chr1:004072904	0.0	W/4072904-4073110,4073486-4073564,4073658-4073716,4073809-4073933,4074030-4074104,4074348-4074423,4074542-4074641,4074725-4074784,4074879-4074949,4075028-4075090,4075195-4075259,4075343-4075439,4075534-4075659,4075794-4075856	AT1G12050.1 CDS  gene_syn F12F1.8, F12F1_8  go_process metabolic process|GO:0008152||IEA  go_process aromatic amino acid family metabolic process|GO:0009072||IEA  go_function catalytic activity|GO:0003824||IEA  go_function fumarylacetoacetase activity|GO:0004334||IEA  go_component cellular_component|GO:0005575||ND  go_process aromatic amino acid family metabolic process|GO:0009072||ISS  go_function fumarylacetoacetase activity|GO:0004334||ISS  product fumarylacetoacetase, putative  note fumarylacetoacetase, putative; FUNCTIONS IN: fumarylacetoacetase activity, catalytic activity; INVOLVED IN: aromatic amino acid family metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234), Fumarylacetoacetase, N-terminal (InterPro:IPR015377), Fumarylacetoacetase (InterPro:IPR005959); Has 2908 Blast hits to 2904 proteins in 587 species: Archae - 79; Bacteria - 1504; Metazoa - 254; Fungi - 107; Plants - 28; Viruses - 0; Other Eukaryotes - 936 (source: NCBI BLink).  protein_id AT1G12050.1p  transcript_id AT1G12050.1  protein_id AT1G12050.1p  transcript_id AT1G12050.1  
At1g12060	chr1:004076334	0.0	W/4076334-4076910,4076954-4077024	AT1G12060.1 CDS  gene_syn ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 5, ATBAG5, F12F1.7, F12F1_7  gene ATBAG5  function A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process apoptosis|GO:0006915||ISS  go_process regulation of apoptosis|GO:0042981||ISS  go_function protein binding|GO:0005515||ISS  product ATBAG5 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 5); protein binding  note ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 5 (ATBAG5); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of apoptosis, apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Apoptosis regulator Bcl-2 protein, BAG (InterPro:IPR003103), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6); calmodulin binding / protein binding (TAIR:AT2G46240.1); Has 44 Blast hits to 44 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12060.1p  transcript_id AT1G12060.1  protein_id AT1G12060.1p  transcript_id AT1G12060.1  
At1g12064	chr1:004077705	0.0	C/4077705-4078034	AT1G12064.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12064.1p  transcript_id AT1G12064.1  protein_id AT1G12064.1p  transcript_id AT1G12064.1  
At1g12070	chr1:004078913	0.0	C/4078913-4078984,4079147-4079271,4079364-4079588,4079766-4079832,4079924-4080106	AT1G12070.1 CDS  gene_syn F12F1.5, F12F1_5  go_component cytoplasm|GO:0005737||IEA  go_function Rho GDP-dissociation inhibitor activity|GO:0005094||IEA  go_component cytoplasm|GO:0005737||ISS  go_process biological_process|GO:0008150||ND  go_function Rho GDP-dissociation inhibitor activity|GO:0005094||ISS  product Rho GDP-dissociation inhibitor family protein  note Rho GDP-dissociation inhibitor family protein; FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Rho GDP-dissociation inhibitor family protein (TAIR:AT1G62450.1); Has 496 Blast hits to 496 proteins in 128 species: Archae - 0; Bacteria - 0; Metazoa - 282; Fungi - 109; Plants - 66; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G12070.1p  transcript_id AT1G12070.1  protein_id AT1G12070.1p  transcript_id AT1G12070.1  
At1g12080	chr1:004084289	0.0	W/4084289-4084303,4084487-4084567,4084670-4084888	AT1G12080.1 CDS  gene_syn F12F1.4, F12F1_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8910 Blast hits to 3057 proteins in 337 species: Archae - 53; Bacteria - 687; Metazoa - 3963; Fungi - 449; Plants - 285; Viruses - 240; Other Eukaryotes - 3233 (source: NCBI BLink).  protein_id AT1G12080.1p  transcript_id AT1G12080.1  protein_id AT1G12080.1p  transcript_id AT1G12080.1  
At1g12080	chr1:004084289	0.0	W/4084289-4084303,4084487-4084888	AT1G12080.2 CDS  gene_syn F12F1.4, F12F1_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22005 Blast hits to 8094 proteins in 744 species: Archae - 137; Bacteria - 2550; Metazoa - 7712; Fungi - 1615; Plants - 613; Viruses - 338; Other Eukaryotes - 9040 (source: NCBI BLink).  protein_id AT1G12080.2p  transcript_id AT1G12080.2  protein_id AT1G12080.2p  transcript_id AT1G12080.2  
At1g12090	chr1:004090176	0.0	C/4090176-4090589	AT1G12090.1 CDS  gene_syn ELP, EXTENSIN-LIKE PROTEIN, F12F1.3, F12F1_3  gene ELP  function extensin-like protein (ELP)  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product ELP (EXTENSIN-LIKE PROTEIN); lipid binding  note EXTENSIN-LIKE PROTEIN (ELP); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G62510.1); Has 547 Blast hits to 543 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 541; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G12090.1p  transcript_id AT1G12090.1  protein_id AT1G12090.1p  transcript_id AT1G12090.1  
At1g12100	chr1:004095246	0.0	W/4095246-4095273,4095475-4095845	AT1G12100.1 CDS  gene_syn F12F1.2, F12F1_2  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product lipid binding  note lipid binding; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, seed, leaf; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: ELP (EXTENSIN-LIKE PROTEIN); lipid binding (TAIR:AT1G12090.1); Has 527 Blast hits to 523 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 527; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12100.1p  transcript_id AT1G12100.1  protein_id AT1G12100.1p  transcript_id AT1G12100.1  
At1g12110	chr1:004105341	0.0	W/4105341-4105455,4105641-4105818,4105913-4105952,4106127-4106701,4108426-4109290	AT1G12110.1 CDS  gene_syn ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, ATNRT1, ATNRT1.1, B-1, CHL1, CHL1-1, CHLORATE/NITRATE TRANSPORTER, CHLORINA 1, F12F1.1, F12F1_1, NITRATE TRANSPORTER 1, NITRATE TRANSPORTER 1.1, NITRATE/CHLORATE TRANSPORTER, NRT1, NRT1.1  gene NRT1.1  function Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Expressed in lateral roots. Involved in nitrate signaling which enables the plant root system to detect and exploit nitrate-rich soil patches. Comparing to the wild type, the mutant displays a strongly decreased lateral root proliferation phenotype in nitrate rich patches on growth medium.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to water deprivation|GO:0009414|12509525|IMP  go_process response to nitrate|GO:0010167|17148611|IMP  go_process nitrate transport|GO:0015706|9844028|IMP  go_function transporter activity|GO:0005215||ISS  go_function nitrate transmembrane transporter activity|GO:0015112|9844028|IMP  product NRT1.1; nitrate transmembrane transporter/ transporter  note NRT1.1; FUNCTIONS IN: transporter activity, nitrate transmembrane transporter activity; INVOLVED IN: nitrate transport, response to water deprivation, response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter (NTP2) (TAIR:AT2G26690.1); Has 3973 Blast hits to 3901 proteins in 700 species: Archae - 0; Bacteria - 1734; Metazoa - 442; Fungi - 239; Plants - 1136; Viruses - 0; Other Eukaryotes - 422 (source: NCBI BLink).  protein_id AT1G12110.1p  transcript_id AT1G12110.1  protein_id AT1G12110.1p  transcript_id AT1G12110.1  
At1g12120	chr1:004114933	0.0	C/4114933-4116270,4116356-4116469	AT1G12120.1 CDS  gene_syn T28K15.14, T28K15_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62530.2); Has 113 Blast hits to 100 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 14; Plants - 54; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G12120.1p  transcript_id AT1G12120.1  protein_id AT1G12120.1p  transcript_id AT1G12120.1  
At1g12130	chr1:004118594	0.0	W/4118594-4119146,4119632-4119702,4119819-4119965,4120075-4120293,4120449-4120871	AT1G12130.1 CDS  gene_syn T28K15.13, T28K15_13  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G12160.1); Has 10011 Blast hits to 9530 proteins in 1047 species: Archae - 46; Bacteria - 4141; Metazoa - 1159; Fungi - 1018; Plants - 449; Viruses - 0; Other Eukaryotes - 3198 (source: NCBI BLink).  protein_id AT1G12130.1p  transcript_id AT1G12130.1  protein_id AT1G12130.1p  transcript_id AT1G12130.1  
At1g12140	chr1:004121386	0.0	W/4121386-4121932,4122016-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.1 CDS  gene_syn FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5, FMO GS-OX5, T28K15.12, T28K15_12  gene FMO GS-OX5  function belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates  go_process glucosinolate biosynthetic process|GO:0019761|18799661|IMP  go_function monooxygenase activity|GO:0004497||ISS  go_function flavin-containing monooxygenase activity|GO:0004499|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IMP  product FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5); 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase  note FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5 (FMO GS-OX5); FUNCTIONS IN: monooxygenase activity, 8-methylthiopropyl glucosinolate S-oxygenase activity, flavin-containing monooxygenase activity; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Adrenodoxin reductase (InterPro:IPR000759), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4); 4-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase (TAIR:AT1G62570.1); Has 8772 Blast hits to 8338 proteins in 846 species: Archae - 12; Bacteria - 3382; Metazoa - 1081; Fungi - 1002; Plants - 433; Viruses - 0; Other Eukaryotes - 2862 (source: NCBI BLink).  protein_id AT1G12140.1p  transcript_id AT1G12140.1  protein_id AT1G12140.1p  transcript_id AT1G12140.1  
At1g12140	chr1:004121386	0.0	W/4121386-4121932,4122022-4122086,4122454-4122606,4122674-4122892,4122977-4123366	AT1G12140.2 CDS  gene_syn FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5, FMO GS-OX5, T28K15.12, T28K15_12  gene FMO GS-OX5  function belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates  go_process glucosinolate biosynthetic process|GO:0019761|18799661|IMP  go_function monooxygenase activity|GO:0004497||ISS  go_function flavin-containing monooxygenase activity|GO:0004499|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IDA  go_function 8-methylthiopropyl glucosinolate S-oxygenase activity|GO:0080107|18799661|IMP  product FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5); 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase  note FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5 (FMO GS-OX5); FUNCTIONS IN: monooxygenase activity, 8-methylthiopropyl glucosinolate S-oxygenase activity, flavin-containing monooxygenase activity; INVOLVED IN: glucosinolate biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4); 4-methylthiopropyl glucosinolate S-oxygenase/ 8-methylthiopropyl glucosinolate S-oxygenase/ flavin-containing monooxygenase/ monooxygenase (TAIR:AT1G62570.1); Has 7974 Blast hits to 7543 proteins in 832 species: Archae - 12; Bacteria - 3000; Metazoa - 1045; Fungi - 807; Plants - 432; Viruses - 0; Other Eukaryotes - 2678 (source: NCBI BLink).  protein_id AT1G12140.2p  transcript_id AT1G12140.2  protein_id AT1G12140.2p  transcript_id AT1G12140.2  
At1g12150	chr1:004123530	0.0	C/4123530-4125005,4125158-4125328	AT1G12150.1 CDS  gene_syn T28K15.11, T28K15_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G17210.1); Has 136823 Blast hits to 68042 proteins in 2292 species: Archae - 1576; Bacteria - 22165; Metazoa - 64188; Fungi - 9966; Plants - 5333; Viruses - 600; Other Eukaryotes - 32995 (source: NCBI BLink).  protein_id AT1G12150.1p  transcript_id AT1G12150.1  protein_id AT1G12150.1p  transcript_id AT1G12150.1  
At1g12160	chr1:004126068	0.0	W/4126068-4126611,4126694-4126764,4126868-4127011,4127093-4127311,4127662-4128090	AT1G12160.1 CDS  gene_syn T28K15.10, T28K15_10  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G12130.1); Has 6040 Blast hits to 5603 proteins in 635 species: Archae - 2; Bacteria - 2116; Metazoa - 986; Fungi - 696; Plants - 409; Viruses - 0; Other Eukaryotes - 1831 (source: NCBI BLink).  protein_id AT1G12160.1p  transcript_id AT1G12160.1  protein_id AT1G12160.1p  transcript_id AT1G12160.1  
At1g12170	chr1:004128607	0.0	C/4128607-4129701	AT1G12170.1 CDS  gene_syn T28K15.9, T28K15_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12190.1); Has 908 Blast hits to 884 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 906; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G12170.1p  transcript_id AT1G12170.1  protein_id AT1G12170.1p  transcript_id AT1G12170.1  
At1g12180	chr1:004130454	0.0	W/4130454-4130499,4130604-4130917	AT1G12180.1 CDS  gene_syn T28K15.15, T28K15_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; BEST Arabidopsis thaliana protein match is: heat shock protein-related (TAIR:AT5G47600.1); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12180.1p  transcript_id AT1G12180.1  protein_id AT1G12180.1p  transcript_id AT1G12180.1  
At1g12190	chr1:004132967	0.0	C/4132967-4134094	AT1G12190.1 CDS  gene_syn T28K15.8, T28K15_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G12170.1); Has 703 Blast hits to 685 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 699; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G12190.1p  transcript_id AT1G12190.1  protein_id AT1G12190.1p  transcript_id AT1G12190.1  
At1g12200	chr1:004137627	0.0	W/4137627-4138188,4138416-4138486,4138603-4138755,4138863-4138945,4139061-4139196,4139341-4139517,4139620-4139835	AT1G12200.1 CDS  gene_syn T28K15.7, T28K15_7  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function monooxygenase activity|GO:0004497||ISS  product flavin-containing monooxygenase family protein / FMO family protein  note flavin-containing monooxygenase family protein / FMO family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT1G62580.1); Has 9107 Blast hits to 8683 proteins in 970 species: Archae - 28; Bacteria - 4021; Metazoa - 1067; Fungi - 1001; Plants - 456; Viruses - 0; Other Eukaryotes - 2534 (source: NCBI BLink).  protein_id AT1G12200.1p  transcript_id AT1G12200.1  protein_id AT1G12200.1p  transcript_id AT1G12200.1  
At1g12210	chr1:004140948	0.0	W/4140948-4143605	AT1G12210.1 CDS  gene_syn RFL1, RPS5-like 1, T28K15.6, T28K15_6  gene RFL1  function RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952||ISS  go_process response to bacterium|GO:0009617|10101179|ISS  product RFL1 (RPS5-like 1); ATP binding / protein binding  note RPS5-like 1 (RFL1); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, response to bacterium, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, embryo, sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RPS5 (RESISTANT TO P. SYRINGAE 5); nucleotide binding (TAIR:AT1G12220.1); Has 12469 Blast hits to 10901 proteins in 466 species: Archae - 19; Bacteria - 832; Metazoa - 2530; Fungi - 149; Plants - 8664; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink).  protein_id AT1G12210.1p  transcript_id AT1G12210.1  protein_id AT1G12210.1p  transcript_id AT1G12210.1  
At1g12211	chr1:004143866	0.0	C/4143866-4144114	AT1G12211.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G12211.1p  transcript_id AT1G12211.1  protein_id AT1G12211.1p  transcript_id AT1G12211.1  
At1g12220	chr1:004145011	0.0	W/4145011-4147680	AT1G12220.1 CDS  gene_syn DISEASE RESISTANCE PROTEIN RPS5, RESISTANT TO P. SYRINGAE 5, RPS5, T28K15.5, T28K15_5  gene RPS5  function Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.  go_component intracellular|GO:0005622|9724691|ISS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952|11846877|TAS  go_process defense response|GO:0006952|9724691|IMP  go_process plant-type hypersensitive response|GO:0009626|10224270|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|17277084|IDA  go_function nucleotide binding|GO:0000166|9724691|IMP  product RPS5 (RESISTANT TO P. SYRINGAE 5); nucleotide binding  note RESISTANT TO P. SYRINGAE 5 (RPS5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to bacterium, incompatible interaction, N-terminal protein myristoylation, plant-type hypersensitive response, defense response; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT1G12280.1); Has 11947 Blast hits to 11086 proteins in 481 species: Archae - 23; Bacteria - 555; Metazoa - 2202; Fungi - 149; Plants - 8793; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT1G12220.1p  transcript_id AT1G12220.1  protein_id AT1G12220.1p  transcript_id AT1G12220.1  
At1g12230	chr1:004148050	0.0	W/4148050-4148103,4148194-4148335,4148739-4148817,4149080-4149155,4149250-4149333,4149427-4149531,4149621-4149701,4149777-4149841,4149936-4150005,4150079-4150254,4150339-4150477,4150562-4150708	AT1G12230.1 CDS  gene_syn T28K15.4, T28K15_4  go_component chloroplast|GO:0009507|18431481|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process 5-phosphoribose 1-diphosphate biosynthetic process|GO:0006015||IEA  go_process metabolic process|GO:0008152||IEA  go_process pentose-phosphate shunt, non-oxidative branch|GO:0009052||IEA  go_process glucose catabolic process to lactate and acetate|GO:0019658||IEA  go_function catalytic activity|GO:0003824||IEA  go_function transaldolase activity|GO:0004801||ISS  product transaldolase, putative  note transaldolase, putative; FUNCTIONS IN: transaldolase activity, catalytic activity; INVOLVED IN: glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, carbohydrate metabolic process, metabolic process, pentose-phosphate shunt, non-oxidative branch; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Transaldolase (InterPro:IPR001585); Has 4687 Blast hits to 4687 proteins in 1248 species: Archae - 40; Bacteria - 2981; Metazoa - 141; Fungi - 151; Plants - 60; Viruses - 7; Other Eukaryotes - 1307 (source: NCBI BLink).  protein_id AT1G12230.1p  transcript_id AT1G12230.1  protein_id AT1G12230.1p  transcript_id AT1G12230.1  
At1g12240	chr1:004153699	0.0	W/4153699-4154101,4154430-4154438,4155090-4155334,4155840-4156457,4156564-4156976,4157062-4157149,4157239-4157457	AT1G12240.1 CDS  gene_syn ATBETAFRUCT4, T28K15.3, T28K15_3, VAC-INV, VACUOLAR INVERTASE  gene ATBETAFRUCT4  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_component vacuole|GO:0005773|9332372|ISS  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  go_function beta-fructofuranosidase activity|GO:0004564|9332372|ISS  product ATBETAFRUCT4; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds  note ATBETAFRUCT4; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 32 (InterPro:IPR001362), Glycoside hydrolase, family 32, active site (InterPro:IPR018053), Glycosyl hydrolases family 32, N-terminal (InterPro:IPR013148), Glycosyl hydrolase family 32, C-terminal (InterPro:IPR013189), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar (TAIR:AT1G62660.1); Has 2187 Blast hits to 2159 proteins in 632 species: Archae - 4; Bacteria - 1169; Metazoa - 5; Fungi - 196; Plants - 637; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G12240.1p  transcript_id AT1G12240.1  protein_id AT1G12240.1p  transcript_id AT1G12240.1  
At1g12244	chr1:004157719	0.0	W/4157719-4158039,4158119-4158291,4158367-4158435,4158618-4158669,4158744-4158893	AT1G12244.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process DNA repair|GO:0006281||IEA  go_process DNA recombination|GO:0006310||IEA  go_process response to DNA damage stimulus|GO:0006974||IEA  go_function recombinase activity|GO:0000150||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase  note DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase; FUNCTIONS IN: hydrolase activity, acting on ester bonds, recombinase activity, DNA binding, nuclease activity, nucleic acid binding; INVOLVED IN: DNA repair, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination, response to DNA damage stimulus; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227); Has 2009 Blast hits to 2009 proteins in 796 species: Archae - 0; Bacteria - 1622; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).  protein_id AT1G12244.1p  transcript_id AT1G12244.1  protein_id AT1G12244.1p  transcript_id AT1G12244.1  
At1g12250	chr1:004159287	0.0	W/4159287-4159450,4159565-4159750,4159854-4159883,4160064-4160170,4160734-4160768,4160862-4160990,4161078-4161269	AT1G12250.1 CDS  gene_syn T28K15.2, T28K15_2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product thylakoid lumenal protein-related  note thylakoid lumenal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: thylakoid lumenal 15 kDa protein, chloroplast (TAIR:AT2G44920.2); Has 6004 Blast hits to 3393 proteins in 359 species: Archae - 127; Bacteria - 4195; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 4; Other Eukaryotes - 1572 (source: NCBI BLink).  protein_id AT1G12250.1p  transcript_id AT1G12250.1  protein_id AT1G12250.1p  transcript_id AT1G12250.1  
At1g12250	chr1:004159623	0.0	W/4159623-4159750,4159854-4159883,4160064-4160170,4160734-4160768,4160862-4160990,4161078-4161269	AT1G12250.2 CDS  gene_syn T28K15.2, T28K15_2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product thylakoid lumenal protein-related  note thylakoid lumenal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: thylakoid lumenal 15 kDa protein, chloroplast (TAIR:AT2G44920.2); Has 6077 Blast hits to 3352 proteins in 358 species: Archae - 136; Bacteria - 4250; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 4; Other Eukaryotes - 1581 (source: NCBI BLink).  protein_id AT1G12250.2p  transcript_id AT1G12250.2  protein_id AT1G12250.2p  transcript_id AT1G12250.2  
At1g12260	chr1:004163058	0.0	C/4163058-4163813,4163959-4164230,4164327-4164486	AT1G12260.1 CDS  gene_syn ANAC007, ARABIDOPSIS NAC 007, EMB2749, EMBRYO DEFECTIVE 2749, T28K15.1, T28K15_1, VASCULAR RELATED NAC-DOMAIN PROTEIN 4, VND4  gene ANAC007  function Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC007 (ARABIDOPSIS NAC 007); transcription factor  note ARABIDOPSIS NAC 007 (ANAC007); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC026; transcription factor (TAIR:AT1G62700.1); Has 1749 Blast hits to 1747 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 2; Plants - 1611; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G12260.1p  transcript_id AT1G12260.1  protein_id AT1G12260.1p  transcript_id AT1G12260.1  
At1g12270	chr1:004172105	0.0	W/4172105-4172983,4173119-4173407,4173550-4173635,4173737-4173960,4174045-4174111,4174211-4174270,4174462-4174575	AT1G12270.1 CDS  gene_syn F5O11.2, F5O11_2  go_function binding|GO:0005488||IEA  go_process response to stress|GO:0006950||ISS  product stress-inducible protein, putative  note stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 29103 Blast hits to 13265 proteins in 843 species: Archae - 964; Bacteria - 7395; Metazoa - 8026; Fungi - 1794; Plants - 2170; Viruses - 39; Other Eukaryotes - 8715 (source: NCBI BLink).  protein_id AT1G12270.1p  transcript_id AT1G12270.1  protein_id AT1G12270.1p  transcript_id AT1G12270.1  
At1g12280	chr1:004174875	0.0	C/4174875-4177559	AT1G12280.1 CDS  gene_syn F5O11.34, F5O11_34  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RPS5 (RESISTANT TO P. SYRINGAE 5); nucleotide binding (TAIR:AT1G12220.1); Has 12422 Blast hits to 11239 proteins in 468 species: Archae - 23; Bacteria - 619; Metazoa - 1833; Fungi - 145; Plants - 9548; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G12280.1p  transcript_id AT1G12280.1  protein_id AT1G12280.1p  transcript_id AT1G12280.1  
At1g12290	chr1:004178593	0.0	C/4178593-4181121	AT1G12290.2 CDS  gene_syn F5O11.3, F5O11_3  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; EXPRESSED IN: stem, inflorescence meristem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT4G10780.1).  protein_id AT1G12290.2p  transcript_id AT1G12290.2  protein_id AT1G12290.2p  transcript_id AT1G12290.2  
At1g12290	chr1:004178593	0.0	C/4178593-4181247	AT1G12290.1 CDS  gene_syn F5O11.3, F5O11_3  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; EXPRESSED IN: stem, inflorescence meristem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT4G10780.1); Has 11680 Blast hits to 10749 proteins in 474 species: Archae - 22; Bacteria - 645; Metazoa - 1806; Fungi - 156; Plants - 8840; Viruses - 4; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT1G12290.1p  transcript_id AT1G12290.1  protein_id AT1G12290.1p  transcript_id AT1G12290.1  
At1g12294	chr1:004182132	0.0	C/4182132-4182299	AT1G12294.1 miRNA  gene_syn MICRORNA472A, MIR472A  gene MIR472A  function Encodes a microRNA that targets several CC-NBS-LRR family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUUUUCCUACUCCGCCCAUAC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR472A (MICRORNA472A); miRNA  transcript_id AT1G12294.1  
At1g12300	chr1:004184163	0.0	C/4184163-4186076	AT1G12300.1 CDS  gene_syn F5O11.4, F5O11_4  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12775.1); Has 28084 Blast hits to 6265 proteins in 197 species: Archae - 6; Bacteria - 18; Metazoa - 968; Fungi - 767; Plants - 24757; Viruses - 0; Other Eukaryotes - 1568 (source: NCBI BLink).  protein_id AT1G12300.1p  transcript_id AT1G12300.1  protein_id AT1G12300.1p  transcript_id AT1G12300.1  
At1g12310	chr1:004187500	0.0	C/4187500-4187946	AT1G12310.1 CDS  gene_syn F5O11.35, F5O11_35  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT1G62820.1); Has 12140 Blast hits to 10293 proteins in 1212 species: Archae - 0; Bacteria - 26; Metazoa - 5264; Fungi - 3120; Plants - 2025; Viruses - 0; Other Eukaryotes - 1705 (source: NCBI BLink).  protein_id AT1G12310.1p  transcript_id AT1G12310.1  protein_id AT1G12310.1p  transcript_id AT1G12310.1  
At1g12320	chr1:004189424	0.0	W/4189424-4189483,4189631-4190209	AT1G12320.1 CDS  gene_syn F5O11.5, F5O11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1442 (InterPro:IPR009902); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62840.1); Has 43 Blast hits to 43 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12320.1p  transcript_id AT1G12320.1  protein_id AT1G12320.1p  transcript_id AT1G12320.1  
At1g12330	chr1:004194673	0.0	W/4194673-4194747,4195105-4196226,4196307-4196627	AT1G12330.1 CDS  gene_syn F5O11.6, F5O11_6  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 160 Blast hits to 160 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 12; Plants - 131; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G12330.1p  transcript_id AT1G12330.1  protein_id AT1G12330.1p  transcript_id AT1G12330.1  
At1g12340	chr1:004197396	0.0	W/4197396-4197443,4197518-4197699,4197779-4197901,4197996-4198032	AT1G12340.1 CDS  gene_syn F5O11.7, F5O11_7  go_component membrane|GO:0016020||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G12390.1); Has 463 Blast hits to 463 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G12340.1p  transcript_id AT1G12340.1  protein_id AT1G12340.1p  transcript_id AT1G12340.1  
At1g12350	chr1:004198870	0.0	W/4198870-4198999,4199084-4199201,4199300-4199344,4199445-4199530,4199633-4199685,4199784-4199843,4200005-4200106,4200191-4200310,4200394-4200633	AT1G12350.1 CDS  gene_syn 4-phospho-panto-thenoylcysteine synthetase, ATCOAB, F5O11.36, F5O11_36  gene ATCOAB  function At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4 -phospho-N-pantothenoylcysteine (PPC)  go_component chloroplast|GO:0009507||IEA  go_process coenzyme A biosynthetic process|GO:0015937|12860978|IDA  go_function catalytic activity|GO:0003824||ISS  go_function phosphopantothenate--cysteine ligase activity|GO:0004632|12860978|IDA  product ATCOAB (4-phospho-panto-thenoylcysteine synthetase); catalytic/ phosphopantothenate--cysteine ligase  note 4-phospho-panto-thenoylcysteine synthetase (ATCOAB); FUNCTIONS IN: phosphopantothenate--cysteine ligase activity, catalytic activity; INVOLVED IN: coenzyme A biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DNA/pantothenate metabolism flavoprotein, C-terminal (InterPro:IPR007085); BEST Arabidopsis thaliana protein match is: DNA/panthothenate metabolism flavoprotein family protein (TAIR:AT5G02080.1); Has 411 Blast hits to 393 proteins in 196 species: Archae - 22; Bacteria - 87; Metazoa - 109; Fungi - 90; Plants - 28; Viruses - 4; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G12350.1p  transcript_id AT1G12350.1  protein_id AT1G12350.1p  transcript_id AT1G12350.1  
At1g12360	chr1:004201172	0.0	W/4201172-4201244,4201952-4202010,4202114-4202195,4202288-4202366,4202448-4202498,4202594-4202690,4202775-4202807,4202973-4203098,4203175-4203366,4203511-4203594,4203684-4203782,4203865-4203938,4204172-4204268,4204495-4204620,4204712-4204807,4204891-4205010,4205089-4205163,4205257-4205456,4205702-4205792,4205895-4205984,4206088-4206144	AT1G12360.1 CDS  gene_syn F5O11.8, F5O11_8, KEU, keule  gene KEU  function encodes a Sec1 protein and expressed throughout the plant. physically interacts with Syntaxin1 and is required for cytokinesis.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component peripheral to membrane of membrane fraction|GO:0000300|11157980|IDA  go_component cytosol|GO:0005829|11157980|IDA  go_process cytokinesis|GO:0000910|11157980|IMP  go_process protein secretion|GO:0009306||ISS  go_function protein transporter activity|GO:0008565||ISS  product KEU (keule); protein transporter  note keule (KEU); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, cytokinesis; LOCATED IN: cytosol, peripheral to membrane of membrane fraction, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: SEC1B; protein transporter (TAIR:AT4G12120.1); Has 1324 Blast hits to 1303 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 632; Fungi - 326; Plants - 112; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).  protein_id AT1G12360.1p  transcript_id AT1G12360.1  protein_id AT1G12360.1p  transcript_id AT1G12360.1  
At1g12370	chr1:004206500	0.0	C/4206500-4206685,4206798-4206869,4206944-4207025,4207112-4207152,4207243-4207279,4207368-4207525,4207641-4207881,4207971-4208317,4208534-4208842	AT1G12370.1 CDS  gene_syn F5O11.9, F5O11_9, PHOTOLYASE 1, PHR1, TYPE II CPD PHOTOLYASE, UV RESISTANCE 2, UVR2  gene PHR1  function encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele  go_component cellular_component|GO:0005575||ND  go_process photoreactive repair|GO:0000719|9061951|IMP  go_process photoreactive repair|GO:0000719|9750104|IMP  go_process UV protection|GO:0009650|8990208|IMP  go_function DNA photolyase activity|GO:0003913|8990208|IDA  go_function DNA photolyase activity|GO:0003913|9061951|IDA  product PHR1 (PHOTOLYASE 1); DNA photolyase  note PHOTOLYASE 1 (PHR1); FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: photoreactive repair, UV protection; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 1496 Blast hits to 1492 proteins in 343 species: Archae - 16; Bacteria - 430; Metazoa - 113; Fungi - 37; Plants - 77; Viruses - 36; Other Eukaryotes - 787 (source: NCBI BLink).  protein_id AT1G12370.1p  transcript_id AT1G12370.1  protein_id AT1G12370.1p  transcript_id AT1G12370.1  
At1g12370	chr1:004206500	0.0	C/4206500-4206685,4206798-4206869,4206944-4207025,4207112-4207170,4207243-4207279,4207368-4207525,4207641-4207881,4207971-4208317,4208534-4208842	AT1G12370.2 CDS  gene_syn F5O11.9, F5O11_9, PHOTOLYASE 1, PHR1, TYPE II CPD PHOTOLYASE, UV RESISTANCE 2, UVR2  gene PHR1  function encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele  go_component cellular_component|GO:0005575||ND  go_process photoreactive repair|GO:0000719|9061951|IMP  go_process photoreactive repair|GO:0000719|9750104|IMP  go_process UV protection|GO:0009650|8990208|IMP  go_function DNA photolyase activity|GO:0003913|8990208|IDA  go_function DNA photolyase activity|GO:0003913|9061951|IDA  product PHR1 (PHOTOLYASE 1); DNA photolyase  note PHOTOLYASE 1 (PHR1); FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: photoreactive repair, UV protection; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 2040 Blast hits to 2036 proteins in 467 species: Archae - 24; Bacteria - 661; Metazoa - 119; Fungi - 42; Plants - 91; Viruses - 36; Other Eukaryotes - 1067 (source: NCBI BLink).  protein_id AT1G12370.2p  transcript_id AT1G12370.2  protein_id AT1G12370.2p  transcript_id AT1G12370.2  
At1g12380	chr1:004214499	0.0	C/4214499-4216880	AT1G12380.1 CDS  gene_syn F5O11.10, F5O11_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 97 Blast hits to 97 proteins in 28 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 48; Viruses - 6; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G12380.1p  transcript_id AT1G12380.1  protein_id AT1G12380.1p  transcript_id AT1G12380.1  
At1g12390	chr1:004220347	0.0	W/4220347-4220418,4220968-4221149,4221229-4221351,4221445-4221481	AT1G12390.1 CDS  gene_syn F5O11.11, F5O11_11  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product cornichon family protein  note cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G62880.1); Has 466 Blast hits to 466 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 110; Plants - 42; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G12390.1p  transcript_id AT1G12390.1  protein_id AT1G12390.1p  transcript_id AT1G12390.1  
At1g12400	chr1:004222296	0.0	W/4222296-4222330,4222423-4222603	AT1G12400.1 CDS  gene_syn F5O11.12, F5O11_12  go_component endomembrane system|GO:0012505||IEA  go_process nucleotide-excision repair|GO:0006289||IEA  go_function DNA binding|GO:0003677||IEA  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide excision repair, TFIIH, subunit TTDA (InterPro:IPR009400); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT1G62886.1); Has 125 Blast hits to 125 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G12400.1p  transcript_id AT1G12400.1  protein_id AT1G12400.1p  transcript_id AT1G12400.1  
At1g12410	chr1:004223099	0.0	W/4223099-4223148,4223240-4223283,4223397-4223469,4223801-4223915,4224000-4224137,4224231-4224347,4224455-4224523,4224610-4224705,4224817-4224954	AT1G12410.1 CDS  gene_syn CLP PROTEASE PROTEOLYTIC SUBUNIT 2, CLP2, CLPR2, F5O11.13, F5O11_13, NCLPP2, NUCLEAR-ENCODED CLP PROTEASE P2  gene CLP2  function Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_component chloroplast thylakoid|GO:0009534|11278690|IDA  go_component chloroplast stroma|GO:0009570|11278690|IDA  go_component chloroplastic endopeptidase Clp complex|GO:0009840|11278690|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process chloroplast organization|GO:0009658|16766689|IMP  product CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2); serine-type endopeptidase  note CLP PROTEASE PROTEOLYTIC SUBUNIT 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00670.1); Has 8816 Blast hits to 8800 proteins in 1686 species: Archae - 2; Bacteria - 4508; Metazoa - 115; Fungi - 50; Plants - 695; Viruses - 57; Other Eukaryotes - 3389 (source: NCBI BLink).  protein_id AT1G12410.1p  transcript_id AT1G12410.1  protein_id AT1G12410.1p  transcript_id AT1G12410.1  
At1g12411	chr1:004225321	0.0	C/4225321-4225482	AT1G12411.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G12411.1p  transcript_id AT1G12411.1  protein_id AT1G12411.1p  transcript_id AT1G12411.1  
At1g12420	chr1:004226673	0.0	C/4226673-4227029,4227116-4227220,4227323-4227895,4227979-4228046,4228130-4228244,4228327-4228372,4228856-4228917	AT1G12420.1 CDS  gene_syn ACR8, ACT DOMAIN REPEAT 8, F5O11.14, F5O11_14  gene ACR8  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|12481063|IEP  go_function amino acid binding|GO:0016597|12481063|ISS  product ACR8; amino acid binding  note ACR8; FUNCTIONS IN: amino acid binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACR7; amino acid binding (TAIR:AT4G22780.1); Has 1348 Blast hits to 957 proteins in 236 species: Archae - 0; Bacteria - 683; Metazoa - 0; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink).  protein_id AT1G12420.1p  transcript_id AT1G12420.1  protein_id AT1G12420.1p  transcript_id AT1G12420.1  
At1g12423	chr1:004231027	0.0	C/4231027-4231146	AT1G12423.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G12423.1p  transcript_id AT1G12423.1  protein_id AT1G12423.1p  transcript_id AT1G12423.1  
At1g12430	chr1:004234122	0.0	C/4234122-4234285,4234364-4234492,4234560-4234703,4234798-4234923,4235016-4235141,4235250-4235342,4235433-4235571,4235675-4235806,4235889-4236023,4236111-4236254,4236345-4236548,4236661-4236749,4236864-4237013,4237153-4237306,4237386-4237793,4237890-4238012,4238097-4238197,4238354-4238552	AT1G12430.1 CDS  gene_syn ARK3, ARMADILLO REPEAT KINESIN 3, PAK, phosphatidic acid kinase  gene ARK3  function Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations.  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ARK3 (ARMADILLO REPEAT KINESIN 3); ATP binding / binding / microtubule motor  note ARMADILLO REPEAT KINESIN 3 (ARK3); FUNCTIONS IN: microtubule motor activity, binding, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / kinesin motor family protein (TAIR:AT1G01950.1); Has 20698 Blast hits to 16407 proteins in 694 species: Archae - 110; Bacteria - 872; Metazoa - 10555; Fungi - 1852; Plants - 1557; Viruses - 18; Other Eukaryotes - 5734 (source: NCBI BLink).  protein_id AT1G12430.1p  transcript_id AT1G12430.1  protein_id AT1G12430.1p  transcript_id AT1G12430.1  
At1g12440	chr1:004241816	0.0	C/4241816-4242322	AT1G12440.1 CDS  gene_syn F5O11.17, F5O11_17  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT4G12040.2); Has 773 Blast hits to 766 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 388; Fungi - 2; Plants - 269; Viruses - 6; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G12440.1p  transcript_id AT1G12440.1  protein_id AT1G12440.1p  transcript_id AT1G12440.1  
At1g12440	chr1:004241816	0.0	C/4241816-4242322	AT1G12440.2 CDS  gene_syn F5O11.17, F5O11_17  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger (AN1-like) family protein  note zinc finger (AN1-like) family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: zinc finger (AN1-like) family protein (TAIR:AT4G12040.2); Has 773 Blast hits to 766 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 388; Fungi - 2; Plants - 269; Viruses - 6; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G12440.2p  transcript_id AT1G12440.2  protein_id AT1G12440.2p  transcript_id AT1G12440.2  
At1g12450	chr1:004244496	0.0	W/4244496-4244756,4244954-4245190,4245293-4245510,4245613-4245808	AT1G12450.1 CDS  gene_syn F5O11.19, F5O11_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22850.1); Has 1233 Blast hits to 1230 proteins in 347 species: Archae - 2; Bacteria - 557; Metazoa - 104; Fungi - 72; Plants - 132; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).  protein_id AT1G12450.1p  transcript_id AT1G12450.1  protein_id AT1G12450.1p  transcript_id AT1G12450.1  
At1g12451	chr1:004246109	0.0	C/4246109-4246291	AT1G12451.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G12451.1p  transcript_id AT1G12451.1  protein_id AT1G12451.1p  transcript_id AT1G12451.1  
At1g12460	chr1:004247703	0.0	W/4247703-4248856,4248950-4250444	AT1G12460.1 CDS  gene_syn F5O11.21, F5O11_21  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G62950.1); Has 113666 Blast hits to 77708 proteins in 2862 species: Archae - 57; Bacteria - 7111; Metazoa - 44169; Fungi - 4943; Plants - 42933; Viruses - 182; Other Eukaryotes - 14271 (source: NCBI BLink).  protein_id AT1G12460.1p  transcript_id AT1G12460.1  protein_id AT1G12460.1p  transcript_id AT1G12460.1  
At1g12470	chr1:004251359	0.0	W/4251359-4251521,4251640-4251852,4251947-4252086,4252177-4252272,4252620-4252761,4252839-4252884,4252997-4253141,4253257-4253400,4253507-4253626,4253770-4253826,4253907-4253966,4254114-4254221,4254380-4254522,4254718-4254796,4254905-4254967,4255060-4255190,4255276-4255381,4255566-4255754,4255926-4256153,4256253-4256408,4256531-4256692,4256826-4256942,4257025-4257201	AT1G12470.1 CDS  gene_syn F5O11.22, F5O11_22  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product Pep3/Vps18/deep orange family protein  note Pep3/Vps18/deep orange family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pep3/Vps18/deep orange (InterPro:IPR007810), Zinc finger, RING-type (InterPro:IPR001841); Has 373 Blast hits to 361 proteins in 148 species: Archae - 0; Bacteria - 2; Metazoa - 154; Fungi - 106; Plants - 17; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G12470.1p  transcript_id AT1G12470.1  protein_id AT1G12470.1p  transcript_id AT1G12470.1  
At1g12480	chr1:004257427	0.0	C/4257427-4257778,4257856-4258667,4258743-4259249	AT1G12480.1 CDS  gene_syn CARBON DIOXIDE INSENSITIVE 3, CDI3, F5O11.23, F5O11_23, OZONE-SENSITIVE 1, OZS1, RADICAL-INDUCED CELL DEATH 3, RCD3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1  gene OZS1  function Encodes a membrane protein with 10 predicted transmembrane helices. SLAC1 is a multispanning membrane protein expressed predominantly in guard cells that plays a role in regulating cellular ion homeostasis and S-type anion currents. SLAC1 is important for normal stomatal closure in response to a variety of signals including elevated CO2, ozone, ABA, darkness, and humidity. SLAC1:GFP localizes to the plasma membrane.  go_component plasma membrane|GO:0005886|18305482|IDA  go_component integral to membrane|GO:0016021||ISS  go_process anion transport|GO:0006820|18305484|IMP  go_process cellular ion homeostasis|GO:0006873|18305482|IMP  go_process response to humidity|GO:0009270|18305484|IMP  go_process response to abscisic acid stimulus|GO:0009737|18305484|IMP  go_process response to carbon dioxide|GO:0010037|18305484|IMP  go_process stomatal movement|GO:0010118|18305484|IMP  go_process response to ozone|GO:0010193|18305484|IMP  go_process multicellular organismal water homeostasis|GO:0050891|18305484|IMP  go_function transporter activity|GO:0005215||ISS  product OZS1 (OZONE-SENSITIVE 1); transporter  note OZONE-SENSITIVE 1 (OZS1); FUNCTIONS IN: transporter activity; INVOLVED IN: in 8 processes; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAH3 (SLAC1 HOMOLOGUE 3); transporter (TAIR:AT5G24030.1); Has 525 Blast hits to 525 proteins in 215 species: Archae - 11; Bacteria - 368; Metazoa - 0; Fungi - 24; Plants - 88; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G12480.1p  transcript_id AT1G12480.1  protein_id AT1G12480.1p  transcript_id AT1G12480.1  
At1g12490	chr1:004260783	0.0	W/4260783-4260937,4260966-4261869	AT1G12490.1 CDS  gene_syn F5O11.24, F5O11_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G09650.1); Has 100 Blast hits to 100 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G12490.1p  transcript_id AT1G12490.1  protein_id AT1G12490.1p  transcript_id AT1G12490.1  
At1g12500	chr1:004263542	0.0	C/4263542-4263955,4264286-4264957	AT1G12500.1 CDS  gene_syn F5O11.25, F5O11_25  go_component membrane|GO:0016020||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product phosphate translocator-related  note phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: organic anion transmembrane transporter (TAIR:AT3G11320.1); Has 1798 Blast hits to 1797 proteins in 187 species: Archae - 4; Bacteria - 13; Metazoa - 544; Fungi - 288; Plants - 744; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).  protein_id AT1G12500.1p  transcript_id AT1G12500.1  protein_id AT1G12500.1p  transcript_id AT1G12500.1  
At1g12510	chr1:004266988	0.0	C/4266988-4267061	AT1G12510.1 tRNA  gene_syn 60116.TRNA-VAL-1, 61405.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT1G12510.1  
At1g12520	chr1:004267277	0.0	C/4267277-4267543,4267617-4267840,4268143-4268206	AT1G12520.3 CDS  gene_syn ATCCS, COPPER CHAPERONE FOR SOD1, COPPER/ZINC SUPEROXIDE DISMUTASE COPPER CHAPERONE, F5O11.26, F5O11_26  gene ATCCS  function Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15848163|IDA  go_process cellular copper ion homeostasis|GO:0006878|15848163|TAS  go_function superoxide dismutase activity|GO:0004784|15848163|IDA  go_function superoxide dismutase activity|GO:0004784|15848163|IGI  go_function superoxide dismutase activity|GO:0004784|16126858|IMP  go_function superoxide dismutase copper chaperone activity|GO:0016532||ISS  product ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone  note COPPER CHAPERONE FOR SOD1 (ATCCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT2G28190.1); Has 1955 Blast hits to 1955 proteins in 451 species: Archae - 2; Bacteria - 62; Metazoa - 890; Fungi - 250; Plants - 468; Viruses - 112; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT1G12520.3p  transcript_id AT1G12520.3  protein_id AT1G12520.3p  transcript_id AT1G12520.3  
At1g12520	chr1:004267277	0.0	C/4267277-4267543,4267617-4267840,4268143-4268277,4268375-4268438	AT1G12520.2 CDS  gene_syn ATCCS, COPPER CHAPERONE FOR SOD1, COPPER/ZINC SUPEROXIDE DISMUTASE COPPER CHAPERONE, F5O11.26, F5O11_26  gene ATCCS  function Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15848163|IDA  go_process cellular copper ion homeostasis|GO:0006878|15848163|TAS  go_function superoxide dismutase activity|GO:0004784|15848163|IDA  go_function superoxide dismutase activity|GO:0004784|15848163|IGI  go_function superoxide dismutase activity|GO:0004784|16126858|IMP  go_function superoxide dismutase copper chaperone activity|GO:0016532||ISS  product ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone  note COPPER CHAPERONE FOR SOD1 (ATCCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424), Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT2G28190.1); Has 2326 Blast hits to 2326 proteins in 561 species: Archae - 2; Bacteria - 257; Metazoa - 929; Fungi - 256; Plants - 588; Viruses - 112; Other Eukaryotes - 182 (source: NCBI BLink).  protein_id AT1G12520.2p  transcript_id AT1G12520.2  protein_id AT1G12520.2p  transcript_id AT1G12520.2  
At1g12520	chr1:004267277	0.0	C/4267277-4267543,4267617-4267840,4268143-4268277,4268375-4268447,4268529-4268555,4268664-4268900	AT1G12520.1 CDS  gene_syn ATCCS, COPPER CHAPERONE FOR SOD1, COPPER/ZINC SUPEROXIDE DISMUTASE COPPER CHAPERONE, F5O11.26, F5O11_26  gene ATCCS  function Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|15848163|IDA  go_process cellular copper ion homeostasis|GO:0006878|15848163|TAS  go_function superoxide dismutase activity|GO:0004784|15848163|IDA  go_function superoxide dismutase activity|GO:0004784|15848163|IGI  go_function superoxide dismutase activity|GO:0004784|16126858|IMP  go_function superoxide dismutase copper chaperone activity|GO:0016532||ISS  product ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone  note COPPER CHAPERONE FOR SOD1 (ATCCS); FUNCTIONS IN: superoxide dismutase copper chaperone activity, superoxide dismutase activity; INVOLVED IN: cellular copper ion homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc binding (InterPro:IPR001424), Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); superoxide dismutase (TAIR:AT2G28190.1); Has 2532 Blast hits to 2530 proteins in 629 species: Archae - 2; Bacteria - 385; Metazoa - 972; Fungi - 256; Plants - 616; Viruses - 112; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT1G12520.1p  transcript_id AT1G12520.1  protein_id AT1G12520.1p  transcript_id AT1G12520.1  
At1g12530	chr1:004269122	0.0	C/4269122-4269476,4269573-4269688,4270661-4270771	AT1G12530.1 CDS  gene_syn F5O11.27, F5O11_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56420.1); Has 29 Blast hits to 28 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12530.1p  transcript_id AT1G12530.1  protein_id AT1G12530.1p  transcript_id AT1G12530.1  
At1g12540	chr1:004273137	0.0	W/4273137-4273280,4273410-4273778,4273897-4273980	AT1G12540.1 CDS  gene_syn F5O11.28, F5O11_28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (bHLH125) (TAIR:AT1G62975.1); Has 216 Blast hits to 215 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 211; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12540.1p  transcript_id AT1G12540.1  protein_id AT1G12540.1p  transcript_id AT1G12540.1  
At1g12550	chr1:004274649	0.0	W/4274649-4275095,4275307-4275831	AT1G12550.1 CDS  gene_syn F5O11.29, F5O11_29  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function cofactor binding|GO:0048037||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT2G45630.2); Has 19677 Blast hits to 19673 proteins in 1516 species: Archae - 283; Bacteria - 9440; Metazoa - 658; Fungi - 751; Plants - 326; Viruses - 5; Other Eukaryotes - 8214 (source: NCBI BLink).  protein_id AT1G12550.1p  transcript_id AT1G12550.1  protein_id AT1G12550.1p  transcript_id AT1G12550.1  
At1g12560	chr1:004276557	0.0	W/4276557-4276719,4276984-4277296,4277381-4277693	AT1G12560.1 CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN A7, ATEXP7, ATEXPA7, ATHEXP ALPHA 1.26, EXP7, EXPA7, EXPANSIN A7, F5O11.30, F5O11_30  gene ATEXPA7  function Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.  go_component extracellular region|GO:0005576||IEA  go_component endomembrane system|GO:0012505||IEA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)  note ARABIDOPSIS THALIANA EXPANSIN A7 (ATEXPA7); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: sperm cell, root hair, root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) (TAIR:AT1G62980.1); Has 1455 Blast hits to 1454 proteins in 133 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 43; Plants - 1379; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G12560.1p  transcript_id AT1G12560.1  protein_id AT1G12560.1p  transcript_id AT1G12560.1  
At1g12570	chr1:004278192	0.0	C/4278192-4278237,4278312-4279260,4279557-4279858,4280255-4280594,4280672-4280753	AT1G12570.1 CDS  gene_syn F5O11.31, F5O11_31  go_component endomembrane system|GO:0012505||IEA  go_process cellular alcohol metabolic process|GO:0006066||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_function aldehyde-lyase activity|GO:0016832||ISS  product glucose-methanol-choline (GMC) oxidoreductase family protein  note glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cellular alcohol metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 8149 Blast hits to 8036 proteins in 676 species: Archae - 2; Bacteria - 2324; Metazoa - 714; Fungi - 1044; Plants - 126; Viruses - 12; Other Eukaryotes - 3927 (source: NCBI BLink).  protein_id AT1G12570.1p  transcript_id AT1G12570.1  protein_id AT1G12570.1p  transcript_id AT1G12570.1  
At1g12580	chr1:004283635	0.0	W/4283635-4284229,4284318-4284614,4284781-4285167,4285386-4285675	AT1G12580.1 CDS  gene_syn F5O11.32, F5O11_32, PEPKR1, Phosphoenolpyruvate carboxylase-related kinase 1  gene PEPKR1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product PEPKR1 (Phosphoenolpyruvate carboxylase-related kinase 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Phosphoenolpyruvate carboxylase-related kinase 1 (PEPKR1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CPK34; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT5G19360.1); Has 89524 Blast hits to 88020 proteins in 2014 species: Archae - 67; Bacteria - 8266; Metazoa - 37934; Fungi - 8549; Plants - 16419; Viruses - 479; Other Eukaryotes - 17810 (source: NCBI BLink).  protein_id AT1G12580.1p  transcript_id AT1G12580.1  protein_id AT1G12580.1p  transcript_id AT1G12580.1  
At1g12590	chr1:004285887	0.0	C/4285887-4285958	AT1G12590.1 tRNA  gene_syn 60116.TRNA-GLY-1, 61405.TRNA-GLY-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gly (anticodon: TCC)  transcript_id AT1G12590.1  
At1g12600	chr1:004286414	0.0	C/4286414-4286647,4286808-4286915,4287137-4287238,4287323-4287565,4287972-4288173,4288252-4288280,4288728-4288859	AT1G12600.1 CDS  gene_syn F5O11.33, F5O11_33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter-related (TAIR:AT4G23010.1); Has 943 Blast hits to 943 proteins in 196 species: Archae - 2; Bacteria - 55; Metazoa - 506; Fungi - 148; Plants - 112; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G12600.1p  transcript_id AT1G12600.1  protein_id AT1G12600.1p  transcript_id AT1G12600.1  
At1g12610	chr1:004290205	0.0	C/4290205-4290834	AT1G12610.1 CDS  gene_syn DDF1, DWARF AND DELAYED FLOWERING 1, T12C24.14, T12C24_14  gene DDF1  function Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.  go_process response to salt stress|GO:0009651|14871311|IEP  go_process response to salt stress|GO:0009651|18643985|IGI  go_process gibberellin biosynthetic process|GO:0009686|14871311|IMP  go_process cell growth|GO:0016049|14871311|IMP  go_process regulation of timing of transition from vegetative to reproductive phase|GO:0048510|14871311|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function sequence-specific DNA binding|GO:0043565|18643985|IPI  product DDF1 (DWARF AND DELAYED FLOWERING 1); DNA binding / sequence-specific DNA binding / transcription factor  note DWARF AND DELAYED FLOWERING 1 (DDF1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: response to salt stress, gibberellin biosynthetic process, cell growth, regulation of timing of transition from vegetative to reproductive phase; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ddf2 (DWARF AND DELAYED FLOWERING 2); DNA binding / transcription factor (TAIR:AT1G63030.2); Has 3441 Blast hits to 3437 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3437; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G12610.1p  transcript_id AT1G12610.1  protein_id AT1G12610.1p  transcript_id AT1G12610.1  
At1g12620	chr1:004294883	0.0	C/4294883-4296748	AT1G12620.1 CDS  gene_syn T12C24.15, T12C24_15  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 27983 Blast hits to 6205 proteins in 194 species: Archae - 4; Bacteria - 17; Metazoa - 1072; Fungi - 778; Plants - 24632; Viruses - 0; Other Eukaryotes - 1480 (source: NCBI BLink).  protein_id AT1G12620.1p  transcript_id AT1G12620.1  protein_id AT1G12620.1p  transcript_id AT1G12620.1  
At1g12630	chr1:004298897	0.0	W/4298897-4299475	AT1G12630.1 CDS  gene_syn T12C24.16, T12C24_16  function encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription activator activity|GO:0016563||ISS  product DNA binding / transcription activator/ transcription factor  note DNA binding / transcription activator/ transcription factor; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing protein (TAIR:AT5G52020.1); Has 3631 Blast hits to 3618 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 3623; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G12630.1p  transcript_id AT1G12630.1  protein_id AT1G12630.1p  transcript_id AT1G12630.1  
At1g12640	chr1:004303586	0.0	C/4303586-4303723,4303812-4303930,4304014-4304077,4304188-4304273,4304360-4304768,4304870-4305090,4305210-4305265,4305371-4305666	AT1G12640.1 CDS  gene_syn T12C24.17, T12C24_17  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function acyltransferase activity|GO:0008415||ISS  product membrane bound O-acyl transferase (MBOAT) family protein  note membrane bound O-acyl transferase (MBOAT) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: membrane bound O-acyl transferase (MBOAT) family protein (TAIR:AT1G63050.1); Has 864 Blast hits to 862 proteins in 168 species: Archae - 0; Bacteria - 109; Metazoa - 536; Fungi - 94; Plants - 27; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G12640.1p  transcript_id AT1G12640.1  protein_id AT1G12640.1p  transcript_id AT1G12640.1  
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.1 CDS  gene_syn T12C24.18, T12C24_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 600 Blast hits to 528 proteins in 139 species: Archae - 0; Bacteria - 24; Metazoa - 132; Fungi - 115; Plants - 36; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G12650.1p  transcript_id AT1G12650.1  protein_id AT1G12650.1p  transcript_id AT1G12650.1  
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.2 CDS  gene_syn T12C24.18, T12C24_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 600 Blast hits to 528 proteins in 139 species: Archae - 0; Bacteria - 24; Metazoa - 132; Fungi - 115; Plants - 36; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G12650.2p  transcript_id AT1G12650.2  protein_id AT1G12650.2p  transcript_id AT1G12650.2  
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.3 CDS  gene_syn T12C24.18, T12C24_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 600 Blast hits to 528 proteins in 139 species: Archae - 0; Bacteria - 24; Metazoa - 132; Fungi - 115; Plants - 36; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G12650.3p  transcript_id AT1G12650.3  protein_id AT1G12650.3p  transcript_id AT1G12650.3  
At1g12650	chr1:004306183	0.0	W/4306183-4306287,4306369-4306496,4306597-4306663,4306764-4306816,4306908-4306962,4307047-4307121,4307214-4307334,4307446-4307492,4307578-4307673	AT1G12650.4 CDS  gene_syn T12C24.18, T12C24_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 600 Blast hits to 528 proteins in 139 species: Archae - 0; Bacteria - 24; Metazoa - 132; Fungi - 115; Plants - 36; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).  protein_id AT1G12650.4p  transcript_id AT1G12650.4  protein_id AT1G12650.4p  transcript_id AT1G12650.4  
At1g12660	chr1:004308943	0.0	W/4308943-4309243,4309494-4309558	AT1G12660.1 CDS  gene_syn T12C24.19, T12C24_19  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 13 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12660.1p  transcript_id AT1G12660.1  protein_id AT1G12660.1p  transcript_id AT1G12660.1  
At1g12663	chr1:004310969	0.0	W/4310969-4311254,4311396-4311457	AT1G12663.1 CDS  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  product unknown protein  note INVOLVED IN: defense response; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12660.1); Has 18 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12663.1p  transcript_id AT1G12663.1  protein_id AT1G12663.1p  transcript_id AT1G12663.1  
At1g12665	chr1:004312398	0.0	W/4312398-4312667	AT1G12665.1 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 1510 Blast hits to 363 proteins in 82 species: Archae - 6; Bacteria - 276; Metazoa - 46; Fungi - 201; Plants - 298; Viruses - 144; Other Eukaryotes - 539 (source: NCBI BLink).  protein_id AT1G12665.1p  transcript_id AT1G12665.1  protein_id AT1G12665.1p  transcript_id AT1G12665.1  
At1g12667	chr1:004313858	0.0	W/4313858-4314204	AT1G12667.1 pseudogenic_transcript  pseudo  function Encodes a Plant thionin family protein  
At1g12669	chr1:004315466	0.0	W/4315466-4315987	AT1G12669.1 pseudogenic_transcript  pseudo  function Encodes a Plant thionin family protein [pseudogene]  
At1g12670	chr1:004316701	0.0	W/4316701-4317005	AT1G12670.1 pseudogenic_transcript  pseudo  gene_syn T12C24.20, T12C24_20  function Encodes a Plant thionin family protein [pseudogene]  
At1g12672	chr1:004318457	0.0	W/4318457-4318498,4318596-4318692,4318810-4318871	AT1G12672.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1).  protein_id AT1G12672.1p  transcript_id AT1G12672.1  protein_id AT1G12672.1p  transcript_id AT1G12672.1  
At1g12680	chr1:004320123	0.0	C/4320123-4320484,4320623-4320919,4321516-4322269	AT1G12680.1 CDS  gene_syn PEPKR2, Phosphoenolpyruvate carboxylase-related kinase 2, T12C24.32, T12C24_32  gene PEPKR2  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product PEPKR2 (Phosphoenolpyruvate carboxylase-related kinase 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note Phosphoenolpyruvate carboxylase-related kinase 2 (PEPKR2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CPK29; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G76040.2); Has 92906 Blast hits to 91377 proteins in 2552 species: Archae - 77; Bacteria - 8548; Metazoa - 39331; Fungi - 8639; Plants - 17815; Viruses - 501; Other Eukaryotes - 17995 (source: NCBI BLink).  protein_id AT1G12680.1p  transcript_id AT1G12680.1  protein_id AT1G12680.1p  transcript_id AT1G12680.1  
At1g12700	chr1:004322913	0.0	C/4322913-4323248,4323749-4324036,4324165-4324247,4324348-4324386,4324457-4326197	AT1G12700.1 CDS  gene_syn T12C24.31, T12C24_31  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing protein  note helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 39649 Blast hits to 17013 proteins in 1428 species: Archae - 82; Bacteria - 6178; Metazoa - 2406; Fungi - 1657; Plants - 25987; Viruses - 4; Other Eukaryotes - 3335 (source: NCBI BLink).  protein_id AT1G12700.1p  transcript_id AT1G12700.1  protein_id AT1G12700.1p  transcript_id AT1G12700.1  
At1g12710	chr1:004326980	0.0	C/4326980-4327403,4327741-4327859,4327992-4328324	AT1G12710.1 CDS  gene_syn AtPP2-A12, Phloem protein 2-A12, T12C24.23, T12C24_23  gene AtPP2-A12  function This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function carbohydrate binding|GO:0030246|12529520|ISS  product AtPP2-A12 (Phloem protein 2-A12); carbohydrate binding  note Phloem protein 2-A12 (AtPP2-A12); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AtPP2-A11 (Phloem protein 2-A11); carbohydrate binding (TAIR:AT1G63090.1); Has 255 Blast hits to 253 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12710.1p  transcript_id AT1G12710.1  protein_id AT1G12710.1p  transcript_id AT1G12710.1  
At1g12720	chr1:004331062	0.0	W/4331062-4333220	AT1G12720.1 mRNA_TE_gene  pseudo  gene_syn T12C24.24, T12C24_24  note Transposable element gene, Mutator-like transposase family, has a 1.2e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g12725	chr1:004333383	0.0	C/4333383-4334033	AT1G12725.1 mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28570.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1)  
At1g12730	chr1:004334675	0.0	W/4334675-4334846,4334954-4335001,4335097-4335157,4335261-4335293,4335438-4335562,4335759-4335893,4336012-4336088,4336180-4336436,4336578-4336634,4336722-4336893,4336999-4337056,4337149-4337234,4337317-4337373,4337523-4337609	AT1G12730.1 CDS  gene_syn T12C24.26, T12C24_26  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function molecular_function|GO:0003674||ND  product cell division cycle protein-related  note cell division cycle protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: cell division cycle protein-related (TAIR:AT1G63110.1); Has 250 Blast hits to 246 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 79; Plants - 31; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G12730.1p  transcript_id AT1G12730.1  protein_id AT1G12730.1p  transcript_id AT1G12730.1  
At1g12730	chr1:004335109	0.0	W/4335109-4335157,4335261-4335293,4335458-4335562,4335759-4335893,4336012-4336088,4336180-4336436,4336578-4336634,4336722-4336893,4336999-4337056,4337149-4337234,4337317-4337373,4337523-4337609	AT1G12730.2 CDS  gene_syn T12C24.26, T12C24_26  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function molecular_function|GO:0003674||ND  product cell division cycle protein-related  note cell division cycle protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI transamidase subunit PIG-U (InterPro:IPR009600); BEST Arabidopsis thaliana protein match is: cell division cycle protein-related (TAIR:AT1G63110.2); Has 233 Blast hits to 231 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 79; Plants - 31; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G12730.2p  transcript_id AT1G12730.2  protein_id AT1G12730.2p  transcript_id AT1G12730.2  
At1g12740	chr1:004342462	0.0	W/4342462-4342658,4342741-4343062,4343149-4343298,4343369-4343620,4343708-4343797,4343891-4343969,4344065-4344171,4344257-4344384,4344476-4344569	AT1G12740.1 CDS  gene_syn CYP87A2, CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 2, T12C24.27, T12C24_27  gene CYP87A2  function encodes a protein with cytochrome P450 domain  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP87A2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP87A2; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP708A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G55940.1); Has 22172 Blast hits to 22115 proteins in 1214 species: Archae - 28; Bacteria - 3179; Metazoa - 9689; Fungi - 3432; Plants - 4649; Viruses - 3; Other Eukaryotes - 1192 (source: NCBI BLink).  protein_id AT1G12740.1p  transcript_id AT1G12740.1  protein_id AT1G12740.1p  transcript_id AT1G12740.1  
At1g12750	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.1 CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6, ATRBL6, T12C24.28, T12C24_28  gene ATRBL6  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6 (ATRBL6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase (TAIR:AT1G63120.1); Has 4150 Blast hits to 4150 proteins in 988 species: Archae - 83; Bacteria - 2091; Metazoa - 485; Fungi - 94; Plants - 192; Viruses - 0; Other Eukaryotes - 1205 (source: NCBI BLink).  protein_id AT1G12750.1p  transcript_id AT1G12750.1  protein_id AT1G12750.1p  transcript_id AT1G12750.1  
At1g12750	chr1:004345100	0.0	C/4345100-4345459,4345550-4345713,4345809-4345972,4346453-4346688	AT1G12750.2 CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6, ATRBL6, T12C24.28, T12C24_28  gene ATRBL6  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6 (ATRBL6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL2 (Arabidopsis thaliana Rhomboid-like 2); serine-type endopeptidase (TAIR:AT1G63120.1); Has 4150 Blast hits to 4150 proteins in 988 species: Archae - 83; Bacteria - 2091; Metazoa - 485; Fungi - 94; Plants - 192; Viruses - 0; Other Eukaryotes - 1205 (source: NCBI BLink).  protein_id AT1G12750.2p  transcript_id AT1G12750.2  protein_id AT1G12750.2p  transcript_id AT1G12750.2  
At1g12760	chr1:004348728	0.0	W/4348728-4349359,4349664-4349783,4349859-4349991,4350075-4350242,4350339-4350512	AT1G12760.1 CDS  gene_syn T12C24.29, T12C24_29  go_component chloroplast|GO:0009507||IEA  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / ubiquitin-protein ligase/ zinc ion binding  note protein binding / ubiquitin-protein ligase/ zinc ion binding; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G63170.1); Has 6688 Blast hits to 6669 proteins in 210 species: Archae - 0; Bacteria - 6; Metazoa - 2304; Fungi - 503; Plants - 2742; Viruses - 19; Other Eukaryotes - 1114 (source: NCBI BLink).  protein_id AT1G12760.1p  transcript_id AT1G12760.1  protein_id AT1G12760.1p  transcript_id AT1G12760.1  
At1g12760	chr1:004348941	0.0	W/4348941-4349359,4349664-4349783,4349859-4349991,4350075-4350242,4350339-4350512	AT1G12760.2 CDS  gene_syn T12C24.29, T12C24_29  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / ubiquitin-protein ligase/ zinc ion binding  note protein binding / ubiquitin-protein ligase/ zinc ion binding; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G63170.1); Has 6687 Blast hits to 6668 proteins in 210 species: Archae - 0; Bacteria - 6; Metazoa - 2303; Fungi - 503; Plants - 2742; Viruses - 19; Other Eukaryotes - 1114 (source: NCBI BLink).  protein_id AT1G12760.2p  transcript_id AT1G12760.2  protein_id AT1G12760.2p  transcript_id AT1G12760.2  
At1g12770	chr1:004351888	0.0	W/4351888-4353543	AT1G12770.1 CDS  gene_syn EMB1586, embryo defective 1586  gene EMB1586  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB1586 (embryo defective 1586); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note embryo defective 1586 (EMB1586); FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: embryonic development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative (TAIR:AT3G19760.1); Has 25549 Blast hits to 25020 proteins in 1695 species: Archae - 449; Bacteria - 9955; Metazoa - 4809; Fungi - 3113; Plants - 1343; Viruses - 12; Other Eukaryotes - 5868 (source: NCBI BLink).  protein_id AT1G12770.1p  transcript_id AT1G12770.1  protein_id AT1G12770.1p  transcript_id AT1G12770.1  
At1g12775	chr1:004353906	0.0	W/4353906-4355840	AT1G12775.1 CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 27792 Blast hits to 6269 proteins in 197 species: Archae - 2; Bacteria - 23; Metazoa - 895; Fungi - 767; Plants - 24554; Viruses - 0; Other Eukaryotes - 1551 (source: NCBI BLink).  protein_id AT1G12775.1p  transcript_id AT1G12775.1  protein_id AT1G12775.1p  transcript_id AT1G12775.1  
At1g12780	chr1:004356124	0.0	C/4356124-4356208,4356292-4356383,4356466-4356548,4356636-4356945,4357199-4357300,4357412-4357547,4357640-4357689,4357923-4358120	AT1G12780.1 CDS  gene_syn F13K23.3, F13K23_3, UDP-D-glucose/UDP-D-galactose 4-epimerase 1, UGE1  gene UGE1  function Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component cytosol|GO:0005829|16644739|IDA  go_component cytosol|GO:0005829|8615692|TAS  go_process response to stress|GO:0006950|17496119|IMP  go_process galactose biosynthetic process|GO:0046369|8615692|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|16644739|IGI  go_function UDP-glucose 4-epimerase activity|GO:0003978|17496119|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|8615692|IDA  go_function UDP-glucose 4-epimerase activity|GO:0003978|8615692|IGI  go_function protein dimerization activity|GO:0046983|16644739|IPI  product UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization  note UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (UGE1); FUNCTIONS IN: UDP-glucose 4-epimerase activity, protein dimerization activity; INVOLVED IN: galactose biosynthetic process, response to stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3); UDP-glucose 4-epimerase/ protein dimerization (TAIR:AT1G63180.1); Has 30220 Blast hits to 30215 proteins in 1715 species: Archae - 481; Bacteria - 13914; Metazoa - 555; Fungi - 352; Plants - 645; Viruses - 32; Other Eukaryotes - 14241 (source: NCBI BLink).  protein_id AT1G12780.1p  transcript_id AT1G12780.1  protein_id AT1G12780.1p  transcript_id AT1G12780.1  
At1g12790	chr1:004359597	0.0	C/4359597-4359746,4359898-4359981,4360067-4360107,4360195-4360289,4360380-4360475,4360558-4360646,4360735-4360862,4361153-4361222	AT1G12790.1 CDS  gene_syn F13K23.4, F13K23_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12790.1p  transcript_id AT1G12790.1  protein_id AT1G12790.1p  transcript_id AT1G12790.1  
At1g12800	chr1:004361778	0.0	C/4361778-4361852,4361946-4362014,4362178-4362285,4362357-4362449,4362537-4362608,4362684-4362770,4362884-4363063,4363146-4363445,4363531-4363620,4363704-4363824,4363915-4364041,4364116-4364851,4364944-4365189	AT1G12800.1 CDS  gene_syn F13K23.5, F13K23_5  go_component chloroplast|GO:0009507|18431481|IDA  go_function RNA binding|GO:0003723||IEA  go_function RNA binding|GO:0003723||ISS  product S1 RNA-binding domain-containing protein  note S1 RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, RNA binding (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: S1 RNA-binding domain-containing protein (TAIR:AT3G23700.1); Has 11447 Blast hits to 6135 proteins in 1348 species: Archae - 6; Bacteria - 6604; Metazoa - 236; Fungi - 109; Plants - 97; Viruses - 3; Other Eukaryotes - 4392 (source: NCBI BLink).  protein_id AT1G12800.1p  transcript_id AT1G12800.1  protein_id AT1G12800.1p  transcript_id AT1G12800.1  
At1g12805	chr1:004366728	0.0	W/4366728-4366955	AT1G12805.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product nucleotide binding  note nucleotide binding; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12805.1p  transcript_id AT1G12805.1  protein_id AT1G12805.1p  transcript_id AT1G12805.1  
At1g12810	chr1:004367332	0.0	W/4367332-4367374,4367494-4367791,4368020-4368118,4368472-4368520	AT1G12810.2 CDS  gene_syn F13K23.6, F13K23_6  product proline-rich family protein  note proline-rich family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages.  protein_id AT1G12810.2p  transcript_id AT1G12810.2  protein_id AT1G12810.2p  transcript_id AT1G12810.2  
At1g12810	chr1:004367332	0.0	W/4367332-4367374,4367494-4367791,4368472-4368520	AT1G12810.1 CDS  gene_syn F13K23.6, F13K23_6  product proline-rich family protein  note proline-rich family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 18253 Blast hits to 9092 proteins in 508 species: Archae - 4; Bacteria - 1240; Metazoa - 7585; Fungi - 2636; Plants - 4321; Viruses - 457; Other Eukaryotes - 2010 (source: NCBI BLink).  protein_id AT1G12810.1p  transcript_id AT1G12810.1  protein_id AT1G12810.1p  transcript_id AT1G12810.1  
At1g12820	chr1:004368879	0.0	C/4368879-4369664,4369757-4370252,4370329-4370780	AT1G12820.1 CDS  gene_syn AFB3, AUXIN SIGNALING F-BOX 3, F13K23.7, F13K23_7  gene AFB3  go_component cellular_component|GO:0005575||ND  go_process response to molecule of bacterial origin|GO:0002237|16627744|IEP  go_process pollen maturation|GO:0010152|18628351|IGI  go_process stamen development|GO:0048443|18628351|IGI  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function auxin binding|GO:0010011|15917797|IGI  product AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase  note AUXIN SIGNALING F-BOX 3 (AFB3); FUNCTIONS IN: auxin binding, ubiquitin-protein ligase activity; INVOLVED IN: stamen development, pollen maturation, response to molecule of bacterial origin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase (TAIR:AT3G26810.1); Has 1735 Blast hits to 1177 proteins in 116 species: Archae - 0; Bacteria - 2; Metazoa - 751; Fungi - 96; Plants - 802; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G12820.1p  transcript_id AT1G12820.1  protein_id AT1G12820.1p  transcript_id AT1G12820.1  
At1g12830	chr1:004374412	0.0	C/4374412-4375053	AT1G12830.1 CDS  gene_syn F13K23.8, F13K23_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 39113 Blast hits to 20367 proteins in 821 species: Archae - 97; Bacteria - 5453; Metazoa - 15540; Fungi - 5514; Plants - 1861; Viruses - 608; Other Eukaryotes - 10040 (source: NCBI BLink).  protein_id AT1G12830.1p  transcript_id AT1G12830.1  protein_id AT1G12830.1p  transcript_id AT1G12830.1  
At1g12840	chr1:004375584	0.0	W/4375584-4375697,4375828-4375896,4375982-4376109,4376206-4376305,4376488-4376555,4376804-4376945,4377045-4377161,4377340-4377465,4377551-4377634,4377723-4377802,4378121-4378220	AT1G12840.1 CDS  gene_syn ARABIDOPSIS THALIANA VACUOLAR ATP SYNTHASE SUBUNIT C, ATVHA-C, DE-ETIOLATED 3, DET3, F13K23.9, F13K23_9, VACUOLAR ATP SYNTHASE SUBUNIT C  gene DET3  function Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component vacuolar proton-transporting V-type ATPase, V1 domain|GO:0000221|10617574|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component plasma membrane|GO:0005886|10617574|IDA  go_process lignin biosynthetic process|GO:0009809|16159327|IGI  go_process unidimensional cell growth|GO:0009826|10617574|IMP  go_process carbohydrate biosynthetic process|GO:0016051|16159327|IGI  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961|10617574|IGI  product DET3 (DE-ETIOLATED 3); proton-transporting ATPase, rotational mechanism  note DE-ETIOLATED 3 (DET3); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: lignin biosynthetic process, carbohydrate biosynthetic process, unidimensional cell growth; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit C (InterPro:IPR004907); Has 421 Blast hits to 402 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 90; Plants - 40; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G12840.1p  transcript_id AT1G12840.1  protein_id AT1G12840.1p  transcript_id AT1G12840.1  
At1g12845	chr1:004379023	0.0	C/4379023-4379382	AT1G12845.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G12845.1p  transcript_id AT1G12845.1  protein_id AT1G12845.1p  transcript_id AT1G12845.1  
At1g12850	chr1:004380022	0.0	C/4380022-4380666,4381005-4381577	AT1G12850.1 CDS  gene_syn F13K23.10, F13K23_10  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: N-terminal protein myristoylation, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Uncharacterised conserved protein UCP036920, phosphoglycerate mutase, plant X4/Y4 (InterPro:IPR017070); BEST Arabidopsis thaliana protein match is: catalytic (TAIR:AT3G26780.1); Has 1266 Blast hits to 1214 proteins in 304 species: Archae - 4; Bacteria - 504; Metazoa - 376; Fungi - 31; Plants - 127; Viruses - 2; Other Eukaryotes - 222 (source: NCBI BLink).  protein_id AT1G12850.1p  transcript_id AT1G12850.1  protein_id AT1G12850.1p  transcript_id AT1G12850.1  
At1g12860	chr1:004382223	0.0	W/4382223-4383350,4384752-4385642,4385724-4385936,4386019-4386189,4386309-4386392	AT1G12860.1 CDS  gene_syn F13K23.12, F13K23_12, ICE2, INDUCER OF CBF EXPRESSION 2, SCREAM 2, SCRM2  gene SCRM2  function Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process guard mother cell differentiation|GO:0010444|18641265|IMP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to freezing|GO:0050826|19026725|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product SCRM2 (SCREAM 2); DNA binding / transcription factor  note SCREAM 2 (SCRM2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to freezing, guard mother cell differentiation, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), F-box associated type 1 (InterPro:IPR017451), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G13200.1); Has 2319 Blast hits to 2313 proteins in 165 species: Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 28; Plants - 2199; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G12860.1p  transcript_id AT1G12860.1  protein_id AT1G12860.1p  transcript_id AT1G12860.1  
At1g12870	chr1:004387129	0.0	C/4387129-4387236,4387968-4389110	AT1G12870.1 CDS  gene_syn F13K23.13, F13K23_13  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product S locus F-box-related / SLF-related  note S locus F-box-related / SLF-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: SCRM2 (SCREAM 2); DNA binding / transcription factor (TAIR:AT1G12860.1); Has 1066 Blast hits to 1054 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1062; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G12870.1p  transcript_id AT1G12870.1  protein_id AT1G12870.1p  transcript_id AT1G12870.1  
At1g12880	chr1:004390036	0.0	W/4390036-4390106,4390251-4390374,4390457-4390540,4390632-4390781,4390864-4391046	AT1G12880.1 CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 12, F13K23.14, F13K23_14, atnudt12  gene atnudt12  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 12 (atnudt12); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13); bis(5 -adenosyl)-pentaphosphatase/ hydrolase (TAIR:AT3G26690.2); Has 834 Blast hits to 832 proteins in 229 species: Archae - 0; Bacteria - 307; Metazoa - 225; Fungi - 72; Plants - 132; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G12880.1p  transcript_id AT1G12880.1  protein_id AT1G12880.1p  transcript_id AT1G12880.1  
At1g12890	chr1:004391734	0.0	W/4391734-4392393	AT1G12890.1 CDS  gene_syn F13K23.25  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element-binding family protein (TAIR:AT1G28160.1); Has 3367 Blast hits to 3350 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3361; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G12890.1p  transcript_id AT1G12890.1  protein_id AT1G12890.1p  transcript_id AT1G12890.1  
At1g12900	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393542-4393747	AT1G12900.2 CDS  gene_syn F13K23.15, F13K23_15, GAPA-2, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2  gene GAPA-2  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_process glycolysis|GO:0006096||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, glyceraldehyde-3-phosphate dehydrogenase activity, catalytic activity; INVOLVED IN: glycolysis, glucose metabolic process, metabolic process; LOCATED IN: apoplast, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding (TAIR:AT3G26650.1); Has 16656 Blast hits to 16655 proteins in 3851 species: Archae - 18; Bacteria - 6584; Metazoa - 1240; Fungi - 1867; Plants - 2492; Viruses - 0; Other Eukaryotes - 4455 (source: NCBI BLink).  protein_id AT1G12900.2p  transcript_id AT1G12900.2  protein_id AT1G12900.2p  transcript_id AT1G12900.2  
At1g12900	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393546-4393850,4394044-4394148,4394242-4394283	AT1G12900.1 CDS  gene_syn F13K23.15, F13K23_15, GAPA-2, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2  gene GAPA-2  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_process glycolysis|GO:0006096||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, glyceraldehyde-3-phosphate dehydrogenase activity, catalytic activity; INVOLVED IN: glycolysis, glucose metabolic process, metabolic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding (TAIR:AT3G26650.1); Has 17333 Blast hits to 17327 proteins in 3916 species: Archae - 27; Bacteria - 6603; Metazoa - 1325; Fungi - 1881; Plants - 2522; Viruses - 0; Other Eukaryotes - 4975 (source: NCBI BLink).  protein_id AT1G12900.1p  transcript_id AT1G12900.1  protein_id AT1G12900.1p  transcript_id AT1G12900.1  
At1g12900	chr1:004392634	0.0	C/4392634-4393136,4393224-4393468,4393546-4393850	AT1G12900.3 CDS  gene_syn F13K23.15, F13K23_15, GAPA-2, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2  gene GAPA-2  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_process glycolysis|GO:0006096||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2 (GAPA-2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: glycolysis, glucose metabolic process, metabolic process; LOCATED IN: apoplast, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding (TAIR:AT3G26650.1); Has 17346 Blast hits to 17340 proteins in 3915 species: Archae - 27; Bacteria - 6608; Metazoa - 1325; Fungi - 1881; Plants - 2527; Viruses - 0; Other Eukaryotes - 4978 (source: NCBI BLink).  protein_id AT1G12900.3p  transcript_id AT1G12900.3  protein_id AT1G12900.3p  transcript_id AT1G12900.3  
At1g12910	chr1:004395114	0.0	C/4395114-4396154	AT1G12910.1 CDS  gene_syn ANTHOCYANIN11, ATAN11, F13K23.16, F13K23_16, LIGHT-REGULATED WD 1, LWD1  gene ATAN11  function Encodes a protein with similarity to the petunia WD repeat protein an11.  go_component cellular_component|GO:0005575||ND  go_process anthocyanin biosynthetic process|GO:0009718|12369624|NAS  go_process entrainment of circadian clock by photoperiod|GO:0043153|18676661|IEP  go_process photoperiodism, flowering|GO:0048573|18676661|IMP  go_function nucleotide binding|GO:0000166||ISS  product ATAN11 (ANTHOCYANIN11); nucleotide binding  note ANTHOCYANIN11 (ATAN11); FUNCTIONS IN: nucleotide binding; INVOLVED IN: photoperiodism, flowering, anthocyanin biosynthetic process, entrainment of circadian clock by photoperiod; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: LWD2 (LIGHT-REGULATED WD 2); nucleotide binding (TAIR:AT3G26640.1); Has 3453 Blast hits to 3259 proteins in 251 species: Archae - 6; Bacteria - 163; Metazoa - 1585; Fungi - 798; Plants - 447; Viruses - 0; Other Eukaryotes - 454 (source: NCBI BLink).  protein_id AT1G12910.1p  transcript_id AT1G12910.1  protein_id AT1G12910.1p  transcript_id AT1G12910.1  
At1g12920	chr1:004396555	0.0	C/4396555-4397859	AT1G12920.1 CDS  gene_syn ERF1-2, EUKARYOTIC RELEASE FACTOR 1-2, F13K23.17, F13K23_17  gene ERF1-2  function Encodes a eukaryotic release factor one homolog.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component translation release factor complex|GO:0018444||TAS  go_process translational termination|GO:0006415|15474304|IGI  go_process translational termination|GO:0006415||ISS  go_function translation release factor activity|GO:0003747|15474304|IGI  go_function translation release factor activity|GO:0003747||ISS  product ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2); translation release factor  note EUKARYOTIC RELEASE FACTOR 1-2 (ERF1-2); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: translation release factor complex, plasma membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF/aRF subunit 1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: ERF1-3 (eukaryotic release factor 1-3); translation release factor (TAIR:AT3G26618.1); Has 793 Blast hits to 791 proteins in 273 species: Archae - 185; Bacteria - 0; Metazoa - 164; Fungi - 97; Plants - 79; Viruses - 1; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G12920.1p  transcript_id AT1G12920.1  protein_id AT1G12920.1p  transcript_id AT1G12920.1  
At1g12930	chr1:004398588	0.0	C/4398588-4398824,4398916-4399032,4399105-4399262,4399347-4399458,4399548-4399735,4399914-4400006,4400176-4400363,4400657-4400742,4401047-4401196,4401304-4401439,4401616-4401695,4401779-4401892,4402145-4402225,4402518-4402652,4403083-4403206,4403332-4403388,4403776-4403837,4403968-4404096,4404285-4404341,4404439-4404522,4404608-4404727,4404818-4405024,4405107-4405205,4405292-4405495	AT1G12930.1 CDS  gene_syn F13K23.18, F13K23_18  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product importin-related  note importin-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: transportin-SR-related (TAIR:AT5G62600.1); Has 361 Blast hits to 359 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 89; Plants - 36; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G12930.1p  transcript_id AT1G12930.1  protein_id AT1G12930.1p  transcript_id AT1G12930.1  
At1g12935	chr1:004406318	0.0	C/4406318-4406746	AT1G12935.1 mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, similar to putative polyprotein, blastp match of 48% identity and 1.9e-06 P-value to GP|13957647|gb|AAK50602.1|AC084404_27|AC084404 putative polyprotein {Oryza sativa}  
At1g12938	chr1:004412887	0.0	W/4412887-4413057	AT1G12938.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G12938.1p  transcript_id AT1G12938.1  protein_id AT1G12938.1p  transcript_id AT1G12938.1  
At1g12940	chr1:004416405	0.0	W/4416405-4417091,4417442-4417917,4417992-4418337	AT1G12940.1 CDS  gene_syn ATNRT2.5, F13K23.20, F13K23_20, nitrate transporter2.5  gene ATNRT2.5  function member of High affinity nitrate transporter family  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nitrate transmembrane transporter activity|GO:0015112||ISS  product ATNRT2.5 (nitrate transporter2.5); nitrate transmembrane transporter  note nitrate transporter2.5 (ATNRT2.5); FUNCTIONS IN: nitrate transmembrane transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: stem, inflorescence meristem; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT2:1 (NITRATE TRANSPORTER 2:1); nitrate transmembrane transporter (TAIR:AT1G08090.1); Has 2955 Blast hits to 2803 proteins in 715 species: Archae - 31; Bacteria - 2372; Metazoa - 73; Fungi - 180; Plants - 153; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).  protein_id AT1G12940.1p  transcript_id AT1G12940.1  protein_id AT1G12940.1p  transcript_id AT1G12940.1  
At1g12950	chr1:004419849	0.0	W/4419849-4420214,4420525-4421066,4421167-4421253,4421512-4421568,4421658-4421896,4421995-4422113,4422212-4422298,4422391-4422462	AT1G12950.1 CDS  gene_syn F13K23.21, F13K23_21  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 5476 Blast hits to 5436 proteins in 1091 species: Archae - 109; Bacteria - 3504; Metazoa - 121; Fungi - 206; Plants - 705; Viruses - 0; Other Eukaryotes - 831 (source: NCBI BLink).  protein_id AT1G12950.1p  transcript_id AT1G12950.1  protein_id AT1G12950.1p  transcript_id AT1G12950.1  
At1g12960	chr1:004422707	0.0	C/4422707-4422835,4422914-4422990,4423047-4423155	AT1G12960.1 CDS  gene_syn F13K23.22, F13K23_22  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L27A (RPL27aA)  note 60S ribosomal protein L27A (RPL27aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15 (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G70600.1); Has 612 Blast hits to 610 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 106; Plants - 96; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G12960.1p  transcript_id AT1G12960.1  protein_id AT1G12960.1p  transcript_id AT1G12960.1  
At1g12970	chr1:004423727	0.0	W/4423727-4424317,4424745-4424911,4424996-4425632	AT1G12970.1 CDS  gene_syn F13K23.23, F13K23_23  go_function protein binding|GO:0005515||IEA  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G26500.1); Has 53674 Blast hits to 22120 proteins in 849 species: Archae - 18; Bacteria - 4970; Metazoa - 26455; Fungi - 1600; Plants - 17244; Viruses - 17; Other Eukaryotes - 3370 (source: NCBI BLink).  protein_id AT1G12970.1p  transcript_id AT1G12970.1  protein_id AT1G12970.1p  transcript_id AT1G12970.1  
At1g12980	chr1:004429791	0.0	W/4429791-4430777	AT1G12980.1 CDS  gene_syn DORNROSCHEN, DRN, ENHANCER OF SHOOT REGENERATION 1, ESR1, F3F19.1, F3F19_1  gene ESR1  function Encodes an AP2/ERF protein, is expressed in a subdomain of meristem stem cells, in lateral organ anlagen, and transiently in the distal domain of organ primordia. It is a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ESR1). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Can confer cytokinin-independent shoot formation and causes severe meristem defects when overexpressed in Arabidopsis root explants. Involved in controlling embryogenesis and embryo patterning by interaction with PHAVOLUTA.  go_component nucleus|GO:0005634|19369397|IDA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|19369397|IEP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to cytokinin stimulus|GO:0009735|11752375|IEP  go_process embryonic pattern specification|GO:0009880|17376809|IMP  go_process organ morphogenesis|GO:0009887|11752375|IMP  go_process specification of organ axis polarity|GO:0010084|12615942|IMP  go_process cotyledon development|GO:0048825|17376809|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11752375|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515||NAS  product ESR1 (ENHANCER OF SHOOT REGENERATION 1); DNA binding / protein binding / transcription factor  note ENHANCER OF SHOOT REGENERATION 1 (ESR1); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: embryo, embryonic shoot apical meristem; EXPRESSED DURING: C globular stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DRNL (DORNROSCHEN-LIKE); DNA binding / transcription factor (TAIR:AT1G24590.1); Has 3888 Blast hits to 3690 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 3; Plants - 3873; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G12980.1p  transcript_id AT1G12980.1  protein_id AT1G12980.1p  transcript_id AT1G12980.1  
At1g12990	chr1:004433973	0.0	W/4433973-4434053,4434455-4435552	AT1G12990.1 CDS  gene_syn F3F19.2, F3F19_2  go_component membrane|GO:0016020||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||IEA  go_function acetylglucosaminyltransferase activity|GO:0008375||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 17 protein  note glycosyl transferase family 17 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 17 protein (TAIR:AT1G67880.1); Has 972 Blast hits to 971 proteins in 58 species: Archae - 0; Bacteria - 24; Metazoa - 46; Fungi - 23; Plants - 68; Viruses - 4; Other Eukaryotes - 807 (source: NCBI BLink).  protein_id AT1G12990.1p  transcript_id AT1G12990.1  protein_id AT1G12990.1p  transcript_id AT1G12990.1  
At1g13000	chr1:004436402	0.0	C/4436402-4436503,4436593-4436628,4436716-4436790,4436885-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.1 CDS  gene_syn F3F19.3, F3F19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26440.2); Has 194 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G13000.1p  transcript_id AT1G13000.1  protein_id AT1G13000.1p  transcript_id AT1G13000.1  
At1g13000	chr1:004436402	0.0	C/4436402-4436503,4436593-4436628,4436716-4436790,4436885-4437005,4437081-4437137,4437223-4437336,4437432-4437533,4437631-4437746,4437817-4437900,4438028-4438132,4438207-4438356,4438451-4438562,4438662-4438693	AT1G13000.2 CDS  gene_syn F3F19.3, F3F19_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26440.2); Has 194 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G13000.2p  transcript_id AT1G13000.2  protein_id AT1G13000.2p  transcript_id AT1G13000.2  
At1g13010	chr1:004440214	0.0	W/4440214-4440286	AT1G13010.1 tRNA  gene_syn 51346.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: ACG)  transcript_id AT1G13010.1  
At1g13020	chr1:004440927	0.0	C/4440927-4440954,4441169-4441600,4442331-4443520	AT1G13020.1 CDS  gene_syn F3F19.4, F3F19_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor, putative (EIF4B5)  note eukaryotic translation initiation factor, putative (EIF4B5); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: EIF4B1; translation initiation factor (TAIR:AT3G26400.1); Has 37479 Blast hits to 17094 proteins in 1048 species: Archae - 48; Bacteria - 11060; Metazoa - 12404; Fungi - 2655; Plants - 4577; Viruses - 418; Other Eukaryotes - 6317 (source: NCBI BLink).  protein_id AT1G13020.1p  transcript_id AT1G13020.1  protein_id AT1G13020.1p  transcript_id AT1G13020.1  
At1g13030	chr1:004444284	0.0	C/4444284-4444474,4444553-4444703,4444818-4444967,4445061-4445132,4445222-4445413,4445493-4445533,4445620-4445806,4445926-4446003,4446158-4446224,4446329-4446502,4446579-4446839,4446923-4446987,4447081-4447278	AT1G13030.1 CDS  gene_syn F3F19.5, F3F19_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product sphere organelles protein-related  note sphere organelles protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; Has 13894 Blast hits to 8686 proteins in 584 species: Archae - 12; Bacteria - 813; Metazoa - 5398; Fungi - 1230; Plants - 486; Viruses - 98; Other Eukaryotes - 5857 (source: NCBI BLink).  protein_id AT1G13030.1p  transcript_id AT1G13030.1  protein_id AT1G13030.1p  transcript_id AT1G13030.1  
At1g13040	chr1:004447647	0.0	W/4447647-4449200	AT1G13040.1 CDS  gene_syn F3F19.6, F3F19_6  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G62910.1); Has 23476 Blast hits to 5984 proteins in 177 species: Archae - 3; Bacteria - 14; Metazoa - 544; Fungi - 535; Plants - 21453; Viruses - 0; Other Eukaryotes - 927 (source: NCBI BLink).  protein_id AT1G13040.1p  transcript_id AT1G13040.1  protein_id AT1G13040.1p  transcript_id AT1G13040.1  
At1g13050	chr1:004450568	0.0	W/4450568-4451521	AT1G13050.1 CDS  gene_syn F3F19.7, F3F19_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 384 Blast hits to 355 proteins in 83 species: Archae - 0; Bacteria - 20; Metazoa - 86; Fungi - 33; Plants - 210; Viruses - 7; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G13050.1p  transcript_id AT1G13050.1  protein_id AT1G13050.1p  transcript_id AT1G13050.1  
At1g13050	chr1:004450964	0.0	W/4450964-4451521	AT1G13050.2 CDS  gene_syn F3F19.7, F3F19_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1).  protein_id AT1G13050.2p  transcript_id AT1G13050.2  protein_id AT1G13050.2p  transcript_id AT1G13050.2  
At1g13060	chr1:004452641	0.0	W/4452641-4452760,4452855-4452984,4453279-4453385,4453882-4454016,4454114-4454217,4454340-4454440,4454536-4454663	AT1G13060.1 CDS  gene_syn 20S PROTEASOME BETA SUBUNIT E1, 20S PROTEASOME BETA SUBUNIT PBE1, F3F19.8, F3F19_8, PBE1  gene PBE1  function Encodes 20S proteasome beta subunit PBE1 (PBE1).  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBE1; endopeptidase/ peptidase/ threonine-type endopeptidase  note PBE1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex; EXPRESSED IN: guard cell, cultured cell, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit E, putative (TAIR:AT3G26340.1); Has 4371 Blast hits to 4369 proteins in 408 species: Archae - 458; Bacteria - 181; Metazoa - 1579; Fungi - 898; Plants - 538; Viruses - 0; Other Eukaryotes - 717 (source: NCBI BLink).  protein_id AT1G13060.1p  transcript_id AT1G13060.1  protein_id AT1G13060.1p  transcript_id AT1G13060.1  
At1g13070	chr1:004455477	0.0	W/4455477-4457099	AT1G13070.1 pseudogenic_transcript  pseudo  gene_syn CYP71B27, F3F19.9, F3F19_9  gene CYP71B27  function putative cytochrome P450  note pseudogene, putative cytochrome P450 monooxygenase, strong similarity to gb|D78605 cytochrome P450 monooxygenase from Arabidopsis thaliana and is a member of the PF|00067 Cytochrome P450 family; blastp match of 57% identity and 4.7e-113 P-value to GP|16507125|gb|AAL24049.1|AF426451_1|AF426451 cytochrome P450 {Citrus sinensis}  
At1g13080	chr1:004459212	0.0	W/4459212-4460108,4460196-4460807	AT1G13080.1 CDS  gene_syn CYP71B2, CYTOCHROME P450 71B2, CYTOCHROME P450 MONOOXYGENASE 71B2, F3F19.10, F3F19_10  gene CYP71B2  function cytochrome P450 monooxygenase  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process heat acclimation|GO:0010286|16807682|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP71B2 (CYTOCHROME P450 71B2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 71B2 (CYP71B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone, heat acclimation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP71B19; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26170.1); Has 23588 Blast hits to 23421 proteins in 1264 species: Archae - 21; Bacteria - 2037; Metazoa - 10421; Fungi - 4388; Plants - 5813; Viruses - 3; Other Eukaryotes - 905 (source: NCBI BLink).  protein_id AT1G13080.1p  transcript_id AT1G13080.1  protein_id AT1G13080.1p  transcript_id AT1G13080.1  
At1g13080	chr1:004459493	0.0	W/4459493-4459569,4459643-4460108,4460196-4460807	AT1G13080.2 CDS  gene_syn CYP71B2, CYTOCHROME P450 71B2, CYTOCHROME P450 MONOOXYGENASE 71B2, F3F19.10, F3F19_10  gene CYP71B2  function cytochrome P450 monooxygenase  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process heat acclimation|GO:0010286|16807682|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function oxygen binding|GO:0019825||ISS  product CYP71B2 (CYTOCHROME P450 71B2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 71B2 (CYP71B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone, heat acclimation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP71B20; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26180.1); Has 22997 Blast hits to 22941 proteins in 1254 species: Archae - 21; Bacteria - 2025; Metazoa - 10211; Fungi - 4343; Plants - 5498; Viruses - 3; Other Eukaryotes - 896 (source: NCBI BLink).  protein_id AT1G13080.2p  transcript_id AT1G13080.2  protein_id AT1G13080.2p  transcript_id AT1G13080.2  
At1g13090	chr1:004461846	0.0	W/4461846-4462730,4462813-4463400	AT1G13090.1 CDS  gene_syn CYP71B28, CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 28, F3F19.11, F3F19_11  gene CYP71B28  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B28; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B28; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B29; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13100.1); Has 23019 Blast hits to 22872 proteins in 1237 species: Archae - 21; Bacteria - 1770; Metazoa - 10353; Fungi - 4324; Plants - 5734; Viruses - 0; Other Eukaryotes - 817 (source: NCBI BLink).  protein_id AT1G13090.1p  transcript_id AT1G13090.1  protein_id AT1G13090.1p  transcript_id AT1G13090.1  
At1g13100	chr1:004463983	0.0	W/4463983-4464867,4464951-4465538	AT1G13100.1 CDS  gene_syn CYP71B29, CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 29, F3F19.12, F3F19_12  gene CYP71B29  function putative cytochrome P450  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B29; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B29; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B28; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13090.1); Has 23079 Blast hits to 22914 proteins in 1251 species: Archae - 21; Bacteria - 1843; Metazoa - 10371; Fungi - 4245; Plants - 5757; Viruses - 0; Other Eukaryotes - 842 (source: NCBI BLink).  protein_id AT1G13100.1p  transcript_id AT1G13100.1  protein_id AT1G13100.1p  transcript_id AT1G13100.1  
At1g13110	chr1:004467272	0.0	W/4467272-4468174,4468246-4468857	AT1G13110.1 CDS  gene_syn CYP71B7, CYTOCHROME P450, FAMILY, F3F19.13, F3F19_13  gene CYP71B7  function member of CYP71B  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP71B7; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP71B7; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP71B23; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26210.1); Has 23261 Blast hits to 23085 proteins in 1248 species: Archae - 21; Bacteria - 1903; Metazoa - 10490; Fungi - 4226; Plants - 5778; Viruses - 0; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT1G13110.1p  transcript_id AT1G13110.1  protein_id AT1G13110.1p  transcript_id AT1G13110.1  
At1g13120	chr1:004469334	0.0	C/4469334-4469621,4469701-4469829,4469917-4469985,4470071-4470154,4470237-4470305,4470499-4470580,4470886-4470956,4471039-4471148,4471270-4471619,4471747-4471895,4472002-4472113,4472214-4472369,4472492-4472656,4472774-4472775	AT1G13120.1 CDS  gene_syn F3F19.14, F3F19_14, emb1745, embryo defective 1745  gene emb1745  go_component nuclear pore|GO:0005643||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb1745 (embryo defective 1745)  note embryo defective 1745 (emb1745); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GLE1-like (InterPro:IPR012476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G05523.1); Has 32122 Blast hits to 20275 proteins in 1392 species: Archae - 166; Bacteria - 5743; Metazoa - 12337; Fungi - 2633; Plants - 1041; Viruses - 221; Other Eukaryotes - 9981 (source: NCBI BLink).  protein_id AT1G13120.1p  transcript_id AT1G13120.1  protein_id AT1G13120.1p  transcript_id AT1G13120.1  
At1g13130	chr1:004474726	0.0	W/4474726-4475151,4476425-4476672,4476752-4477272,4477357-4477820	AT1G13130.1 CDS  gene_syn F3F19.15, F3F19_15  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 5 protein / cellulase family protein  note glycosyl hydrolase family 5 protein / cellulase family protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 5 protein / cellulase family protein (TAIR:AT3G26140.1); Has 228 Blast hits to 221 proteins in 80 species: Archae - 0; Bacteria - 80; Metazoa - 0; Fungi - 62; Plants - 69; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G13130.1p  transcript_id AT1G13130.1  protein_id AT1G13130.1p  transcript_id AT1G13130.1  
At1g13140	chr1:004478667	0.0	C/4478667-4480271	AT1G13140.1 CDS  gene_syn CYP86C3, CYTOCHROME P450, FAMILY 86, SUBFAMILY C, POLYPEPTIDE 3, F3F19.16, F3F19_16  gene CYP86C3  function member of CYP86C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP86C3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP86C3; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, cauline leaf, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13150.1); Has 20588 Blast hits to 20538 proteins in 1086 species: Archae - 19; Bacteria - 1390; Metazoa - 9564; Fungi - 4077; Plants - 4772; Viruses - 3; Other Eukaryotes - 763 (source: NCBI BLink).  protein_id AT1G13140.1p  transcript_id AT1G13140.1  protein_id AT1G13140.1p  transcript_id AT1G13140.1  
At1g13145	chr1:004480860	0.0	W/4480860-4481334	AT1G13145.1 pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At1g13150	chr1:004481995	0.0	C/4481995-4483584	AT1G13150.1 CDS  gene_syn CYP86C4, CYTOCHROME P450, FAMILY 86, SUBFAMILY C, POLYPEPTIDE 4, F3F19.17, F3F19_17  gene CYP86C4  function member of CYP86C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP86C4; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP86C4; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86C3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G13140.1); Has 20486 Blast hits to 20432 proteins in 1084 species: Archae - 19; Bacteria - 1411; Metazoa - 9552; Fungi - 3961; Plants - 4793; Viruses - 3; Other Eukaryotes - 747 (source: NCBI BLink).  protein_id AT1G13150.1p  transcript_id AT1G13150.1  protein_id AT1G13150.1p  transcript_id AT1G13150.1  
At1g13160	chr1:004484634	0.0	W/4484634-4485038,4485168-4485335,4485425-4485558,4485651-4485789,4486018-4486164,4486242-4486304,4486430-4486525,4486598-4486657,4486738-4486812,4486906-4486959,4487062-4487163,4487246-4487860,4487948-4488046,4488131-4488388	AT1G13160.1 CDS  gene_syn F3F19.18, F3F19_18  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product SDA1 family protein  note SDA1 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: SDA1 family protein (TAIR:AT4G31520.1); Has 27617 Blast hits to 12077 proteins in 683 species: Archae - 123; Bacteria - 9386; Metazoa - 7313; Fungi - 3149; Plants - 932; Viruses - 547; Other Eukaryotes - 6167 (source: NCBI BLink).  protein_id AT1G13160.1p  transcript_id AT1G13160.1  protein_id AT1G13160.1p  transcript_id AT1G13160.1  
At1g13170	chr1:004488826	0.0	C/4488826-4489014,4489115-4489459,4489532-4489840,4489996-4490151,4490330-4490790,4490951-4491035,4491281-4491634,4491727-4492278	AT1G13170.1 CDS  gene_syn F3F19.19, F3F19_19, ORP1D, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D  gene ORP1D  go_process steroid metabolic process|GO:0008202||IEA  go_process steroid metabolic process|GO:0008202||ISS  go_function oxysterol binding|GO:0008142||ISS  product ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D); oxysterol binding  note OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D (ORP1D); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ORP1C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1C); oxysterol binding / phosphoinositide binding (TAIR:AT4G08180.1); Has 1950 Blast hits to 1858 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 1067; Fungi - 480; Plants - 167; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G13170.1p  transcript_id AT1G13170.1  protein_id AT1G13170.1p  transcript_id AT1G13170.1  
At1g13180	chr1:004495394	0.0	W/4495394-4495440,4495535-4495994,4496367-4496513,4496765-4496857,4496993-4497112,4497534-4497644,4497725-4497850,4497934-4498032,4498124-4498204	AT1G13180.1 CDS  gene_syn ACTIN-RELATED PROTEIN 3, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ARP3, ATARP3, DIS1, DISTORTED TRICHOMES 1, F3F19.20, F3F19_20  gene DIS1  function Mutant has defect in trichome cell expansion and actin organization resulting in a distorted trichome phenotype.  go_function actin binding|GO:0003779||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component Arp2/3 protein complex|GO:0005885|12906796|TAS  go_process cell morphogenesis|GO:0000902|12837952|IMP  go_process actin filament organization|GO:0007015|10572033|IMP  go_process multidimensional cell growth|GO:0009825||IMP  go_process trichome morphogenesis|GO:0010090||IMP  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product DIS1 (DISTORTED TRICHOMES 1); ATP binding / actin binding / protein binding / structural constituent of cytoskeleton  note DISTORTED TRICHOMES 1 (DIS1); FUNCTIONS IN: protein binding, actin binding, structural constituent of cytoskeleton, ATP binding; INVOLVED IN: cell morphogenesis, multidimensional cell growth, actin filament organization, trichome morphogenesis; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000), Actin-related protein 3 (InterPro:IPR015623); BEST Arabidopsis thaliana protein match is: actin, putative (TAIR:AT2G42100.1); Has 9381 Blast hits to 9258 proteins in 2042 species: Archae - 6; Bacteria - 2; Metazoa - 4621; Fungi - 1832; Plants - 980; Viruses - 2; Other Eukaryotes - 1938 (source: NCBI BLink).  protein_id AT1G13180.1p  transcript_id AT1G13180.1  protein_id AT1G13180.1p  transcript_id AT1G13180.1  
At1g13190	chr1:004499633	0.0	W/4499633-4501354	AT1G13190.1 CDS  gene_syn F3F19.21, F3F19_21  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G55670.1); Has 27863 Blast hits to 14829 proteins in 807 species: Archae - 4; Bacteria - 9414; Metazoa - 9821; Fungi - 2223; Plants - 3027; Viruses - 156; Other Eukaryotes - 3218 (source: NCBI BLink).  protein_id AT1G13190.1p  transcript_id AT1G13190.1  protein_id AT1G13190.1p  transcript_id AT1G13190.1  
At1g13195	chr1:004501778	0.0	C/4501778-4501994,4502079-4502316,4502514-4502580,4502709-4502855	AT1G13195.2 CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G24440.1); Has 632 Blast hits to 631 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 313; Fungi - 15; Plants - 171; Viruses - 16; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G13195.2p  transcript_id AT1G13195.2  protein_id AT1G13195.2p  transcript_id AT1G13195.2  
At1g13195	chr1:004501778	0.0	C/4501778-4501994,4502079-4502316,4502514-4502580,4502709-4502871,4503250-4503347	AT1G13195.1 CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G24440.1); Has 629 Blast hits to 628 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 311; Fungi - 15; Plants - 172; Viruses - 16; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G13195.1p  transcript_id AT1G13195.1  protein_id AT1G13195.1p  transcript_id AT1G13195.1  
At1g13200	chr1:004507221	0.0	C/4507221-4508528	AT1G13200.1 CDS  gene_syn F3F19.23, F3F19_23  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: SCRM2 (SCREAM 2); DNA binding / transcription factor (TAIR:AT1G12860.1); Has 947 Blast hits to 936 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 945; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G13200.1p  transcript_id AT1G13200.1  protein_id AT1G13200.1p  transcript_id AT1G13200.1  
At1g13210	chr1:004509252	0.0	C/4509252-4509902,4509995-4510186,4510280-4510504,4510610-4510825,4510920-4511028,4511126-4511214,4511299-4511575,4511675-4511785,4511871-4512769,4512847-4513296,4513382-4513774	AT1G13210.1 CDS  gene_syn ACA.l, F3F19.24, F3F19_24, autoinhibited Ca2+/ATPase II  gene ACA.l  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product ACA.l (autoinhibited Ca2+/ATPase II); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / calmodulin binding  note autoinhibited Ca2+/ATPase II (ACA.l); FUNCTIONS IN: calmodulin binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, phospholipid transport, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT3G25610.1); Has 8358 Blast hits to 7200 proteins in 893 species: Archae - 91; Bacteria - 1921; Metazoa - 2739; Fungi - 1382; Plants - 638; Viruses - 0; Other Eukaryotes - 1587 (source: NCBI BLink).  protein_id AT1G13210.1p  transcript_id AT1G13210.1  protein_id AT1G13210.1p  transcript_id AT1G13210.1  
At1g13220	chr1:004515660	0.0	W/4515660-4515983,4516150-4516359,4516601-4516854,4516939-4517209,4517299-4517415	AT1G13220.1 CDS  gene_syn F3F19.25, F3F19_25, LINC2, LITTLE NUCLEI2  gene LINC2  function Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.  go_component nucleoplasm|GO:0005654|17873096|IDA  go_process nucleus organization|GO:0006997|17873096|IGI  product LINC2 (LITTLE NUCLEI2)  note LITTLE NUCLEI2 (LINC2); INVOLVED IN: nucleus organization; LOCATED IN: nucleoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: LINC3 (LITTLE NUCLEI3) (TAIR:AT1G68790.1); Has 87791 Blast hits to 41538 proteins in 1681 species: Archae - 911; Bacteria - 9018; Metazoa - 45048; Fungi - 5562; Plants - 2874; Viruses - 274; Other Eukaryotes - 24104 (source: NCBI BLink).  protein_id AT1G13220.1p  transcript_id AT1G13220.1  protein_id AT1G13220.1p  transcript_id AT1G13220.1  
At1g13220	chr1:004515699	0.0	W/4515699-4515983,4516150-4516359,4516601-4516854,4516939-4517209,4517299-4517382,4517573-4519482,4519699-4520071	AT1G13220.2 CDS  gene_syn F3F19.25, F3F19_25, LINC2, LITTLE NUCLEI2  gene LINC2  function Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.  go_component nucleoplasm|GO:0005654|17873096|IDA  go_process nucleus organization|GO:0006997|17873096|IGI  product LINC2 (LITTLE NUCLEI2)  note LITTLE NUCLEI2 (LINC2); INVOLVED IN: nucleus organization; LOCATED IN: nucleoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: LINC3 (LITTLE NUCLEI3) (TAIR:AT1G68790.1); Has 273179 Blast hits to 113939 proteins in 2595 species: Archae - 2377; Bacteria - 40399; Metazoa - 120742; Fungi - 19356; Plants - 9669; Viruses - 1336; Other Eukaryotes - 79300 (source: NCBI BLink).  protein_id AT1G13220.2p  transcript_id AT1G13220.2  protein_id AT1G13220.2p  transcript_id AT1G13220.2  
At1g13230	chr1:004520679	0.0	W/4520679-4520894,4521381-4522439	AT1G13230.1 CDS  gene_syn F3F19.26, F3F19_26  function Encodes a leucine-rich repeat protein pii-2. Located in the endoplasmic reticulum/plasma membrane continuum in Arabidopsis roots. Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis.  go_component chloroplast|GO:0009507|15028209|IDA  go_component plasma membrane|GO:0005886|17397506|IDA  go_process signal transduction|GO:0007165|11751054|IC  go_process response to symbiotic fungus|GO:0009610|17397506|IMP  go_process symbiosis, encompassing mutualism through parasitism|GO:0044403|17397506|IMP  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction, response to symbiotic fungus, symbiosis, encompassing mutualism through parasitism; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT3G25670.1); Has 48519 Blast hits to 18237 proteins in 738 species: Archae - 24; Bacteria - 2269; Metazoa - 14712; Fungi - 449; Plants - 28356; Viruses - 0; Other Eukaryotes - 2709 (source: NCBI BLink).  protein_id AT1G13230.1p  transcript_id AT1G13230.1  protein_id AT1G13230.1p  transcript_id AT1G13230.1  
At1g13240	chr1:004522709	0.0	C/4522709-4522782	AT1G13240.1 tRNA  gene_syn 51346.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT1G13240.1  
At1g13245	chr1:004525852	0.0	C/4525852-4525977	AT1G13245.1 CDS  gene_syn DEVIL 4, DVL4, ROTUNDIFOLIA LIKE 17, RTFL17  gene RTFL17  go_process shoot development|GO:0048367|14871303|IMP  go_function molecular_function|GO:0003674||ND  product RTFL17 (ROTUNDIFOLIA LIKE 17)  note ROTUNDIFOLIA LIKE 17 (RTFL17); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: shoot development; EXPRESSED IN: stem, flower, root, leaf; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: RTFL15 (ROTUNDIFOLIA LIKE 15) (TAIR:AT1G68825.2); Has 68 Blast hits to 68 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13245.1p  transcript_id AT1G13245.1  protein_id AT1G13245.1p  transcript_id AT1G13245.1  
At1g13250	chr1:004528965	0.0	C/4528965-4530002	AT1G13250.1 CDS  gene_syn GATL3, Galacturonosyltransferase-like 3, T6J4.1, T6J4_1  gene GATL3  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GATL3 (Galacturonosyltransferase-like 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note Galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL4 (Galacturonosyltransferase-like 4); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT3G06260.1); Has 1237 Blast hits to 1231 proteins in 253 species: Archae - 0; Bacteria - 444; Metazoa - 252; Fungi - 12; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G13250.1p  transcript_id AT1G13250.1  protein_id AT1G13250.1p  transcript_id AT1G13250.1  
At1g13260	chr1:004542386	0.0	W/4542386-4543420	AT1G13260.1 CDS  gene_syn RAV1, T6J4.2, T6J4_2  gene RAV1  function Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process circadian rhythm|GO:0007623|15728337|IEP  go_process response to brassinosteroid stimulus|GO:0009741|15040885|IEP  go_process negative regulation of flower development|GO:0009910|15040885|IMP  go_process leaf development|GO:0048366|15040885|IMP  go_process lateral root development|GO:0048527|15040885|IMP  go_function DNA binding|GO:0003677|15548737|IDA  go_function DNA binding|GO:0003677|9862967|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function transcription repressor activity|GO:0016564|19324928|IDA  product RAV1; DNA binding / transcription factor/ transcription repressor  note RAV1; FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT3G25730.1); Has 3785 Blast hits to 3621 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3768; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G13260.1p  transcript_id AT1G13260.1  protein_id AT1G13260.1p  transcript_id AT1G13260.1  
At1g13270	chr1:004544999	0.0	W/4544999-4545137,4545336-4545420,4545531-4545768,4545853-4546014,4546102-4546143,4546226-4546297,4546461-4546540,4546644-4546741,4546865-4546912,4547010-4547155	AT1G13270.1 CDS  gene_syn MAP1B, MAP1C, METHIONINE AMINOPEPTIDASE 1B  gene MAP1C  function Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.  go_component chloroplast|GO:0009507|18431481|IDA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component mitochondrion|GO:0005739|15681659|TAS  go_component chloroplast|GO:0009507|15681659|TAS  go_process proteolysis|GO:0006508||ISS  go_process N-terminal protein amino acid modification|GO:0031365|15681659|TAS  go_function metalloexopeptidase activity|GO:0008235||ISS  product MAP1C (METHIONINE AMINOPEPTIDASE 1B); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP1B (METHIONINE AMINOPEPTIDASE 1C); aminopeptidase/ metalloexopeptidase (TAIR:AT3G25740.1); Has 11416 Blast hits to 11395 proteins in 1565 species: Archae - 284; Bacteria - 6058; Metazoa - 350; Fungi - 172; Plants - 139; Viruses - 0; Other Eukaryotes - 4413 (source: NCBI BLink).  protein_id AT1G13270.1p  transcript_id AT1G13270.1  protein_id AT1G13270.1p  transcript_id AT1G13270.1  
At1g13270	chr1:004544999	0.0	W/4544999-4545137,4545336-4545420,4545531-4545768,4545853-4546014,4546102-4546143,4546226-4546297,4546461-4546574	AT1G13270.2 CDS  gene_syn MAP1B, MAP1C, METHIONINE AMINOPEPTIDASE 1B  gene MAP1C  function Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.  go_component chloroplast|GO:0009507|18431481|IDA  go_function aminopeptidase activity|GO:0004177||IEA  go_function metalloexopeptidase activity|GO:0008235||IEA  go_component mitochondrion|GO:0005739|15681659|TAS  go_component chloroplast|GO:0009507|15681659|TAS  go_process proteolysis|GO:0006508||ISS  go_process N-terminal protein amino acid modification|GO:0031365|15681659|TAS  go_function metalloexopeptidase activity|GO:0008235||ISS  product MAP1C (METHIONINE AMINOPEPTIDASE 1B); aminopeptidase/ metalloexopeptidase  note METHIONINE AMINOPEPTIDASE 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: MAP1B (METHIONINE AMINOPEPTIDASE 1C); aminopeptidase/ metalloexopeptidase (TAIR:AT3G25740.1); Has 8258 Blast hits to 8258 proteins in 1488 species: Archae - 180; Bacteria - 4808; Metazoa - 252; Fungi - 127; Plants - 114; Viruses - 0; Other Eukaryotes - 2777 (source: NCBI BLink).  protein_id AT1G13270.2p  transcript_id AT1G13270.2  protein_id AT1G13270.2p  transcript_id AT1G13270.2  
At1g13280	chr1:004547624	0.0	W/4547624-4547858,4548023-4548552	AT1G13280.1 CDS  gene_syn ALLENE OXIDE CYCLASE 4, AOC4, T6J4.4, T6J4_4  gene AOC4  function Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process jasmonic acid biosynthetic process|GO:0009695|11891244|TAS  go_process jasmonic acid biosynthetic process|GO:0009695||TAS  go_function allene-oxide cyclase activity|GO:0046423|11891244|ISS  product AOC4 (ALLENE OXIDE CYCLASE 4); allene-oxide cyclase  note ALLENE OXIDE CYCLASE 4 (AOC4); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: jasmonic acid biosynthetic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: AOC3 (ALLENE OXIDE CYCLASE 3); allene-oxide cyclase (TAIR:AT3G25780.1); Has 102 Blast hits to 102 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13280.1p  transcript_id AT1G13280.1  protein_id AT1G13280.1p  transcript_id AT1G13280.1  
At1g13290	chr1:004550366	0.0	C/4550366-4550923,4551177-4551527	AT1G13290.1 CDS  gene_syn DEFECTIVELY ORGANIZED TRIBUTARIES 5, DOT5, T6J4.5, T6J4_5  gene DOT5  function Encodes a putative zinc finger protein (C2H2 family, type IIIA, subclass A1d) that has a WIP domain. Seedlings with mutations in DOT5 have a misaligned venation defect in their leaves and cotyledons. Additional developmental abnormalities, such as elongated petioles and aberrant phyllotaxy suggest that DOT5 is required for normal shoot and root development.  go_component intracellular|GO:0005622||IEA  go_process phloem or xylem histogenesis|GO:0010087|18643975|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|18643975|IMP  go_process cotyledon vascular tissue pattern formation|GO:0010588|18643975|IMP  go_process root development|GO:0048364|18643975|IMP  go_process shoot development|GO:0048367|18643975|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5); transcription factor  note DEFECTIVELY ORGANIZED TRIBUTARIES 5 (DOT5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cotyledon vascular tissue pattern formation, shoot development, phloem or xylem histogenesis, root development, leaf vascular tissue pattern formation; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: NTT (NO TRANSMITTING TRACT); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT3G57670.1); Has 6737 Blast hits to 5247 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 6187; Fungi - 39; Plants - 384; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT1G13290.1p  transcript_id AT1G13290.1  protein_id AT1G13290.1p  transcript_id AT1G13290.1  
At1g13300	chr1:004556977	0.0	W/4556977-4557118,4557293-4557576,4557753-4557942,4558068-4558144,4558250-4558591	AT1G13300.1 CDS  gene_syn T6J4.6, T6J4_6  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677|11118137|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G25790.1); Has 887 Blast hits to 878 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 863; Viruses - 8; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G13300.1p  transcript_id AT1G13300.1  protein_id AT1G13300.1p  transcript_id AT1G13300.1  
At1g13310	chr1:004561217	0.0	C/4561217-4561567,4561748-4561900,4561993-4562159,4562240-4562480,4562559-4562726,4562885-4562929	AT1G13310.1 CDS  gene_syn T6J4.7, T6J4_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); Has 189 Blast hits to 189 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 49; Plants - 22; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G13310.1p  transcript_id AT1G13310.1  protein_id AT1G13310.1p  transcript_id AT1G13310.1  
At1g13320	chr1:004563692	0.0	C/4563692-4563811,4563938-4564004,4564093-4564232,4564323-4564415,4564507-4564689,4564863-4564967,4565295-4565375,4565470-4565611,4565800-4565879,4565992-4566104,4566337-4566583,4566956-4567348	AT1G13320.1 CDS  gene_syn 65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A, PP2AA3, PR65, PROTEIN PHOSPHATASE 2A SUBUNIT A3, T6J4.8, T6J4_8  gene PP2AA3  function one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_component protein phosphatase type 2A complex|GO:0000159|7811971|TAS  go_process regulation of phosphorylation|GO:0042325|7811971|ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3); binding / protein phosphatase type 2A regulator  note PROTEIN PHOSPHATASE 2A SUBUNIT A3 (PP2AA3); FUNCTIONS IN: binding, protein phosphatase type 2A regulator activity; INVOLVED IN: regulation of phosphorylation; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator (TAIR:AT3G25800.1); Has 2173 Blast hits to 1272 proteins in 184 species: Archae - 12; Bacteria - 52; Metazoa - 1228; Fungi - 250; Plants - 172; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT1G13320.1p  transcript_id AT1G13320.1  protein_id AT1G13320.1p  transcript_id AT1G13320.1  
At1g13320	chr1:004563970	0.0	C/4563970-4564002,4564089-4564232,4564323-4564415,4564507-4564689,4564863-4564967,4565295-4565375,4565470-4565611,4565800-4565879,4565992-4566104,4566337-4566583,4566956-4567348	AT1G13320.2 CDS  gene_syn 65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A, PP2AA3, PR65, PROTEIN PHOSPHATASE 2A SUBUNIT A3, T6J4.8, T6J4_8  gene PP2AA3  function one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function binding|GO:0005488||IEA  go_component protein phosphatase type 2A complex|GO:0000159|7811971|TAS  go_process regulation of phosphorylation|GO:0042325|7811971|ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3); binding / protein phosphatase type 2A regulator  note PROTEIN PHOSPHATASE 2A SUBUNIT A3 (PP2AA3); FUNCTIONS IN: binding, protein phosphatase type 2A regulator activity; INVOLVED IN: regulation of phosphorylation; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator (TAIR:AT3G25800.2); Has 2626 Blast hits to 1175 proteins in 180 species: Archae - 8; Bacteria - 41; Metazoa - 1387; Fungi - 421; Plants - 226; Viruses - 0; Other Eukaryotes - 543 (source: NCBI BLink).  protein_id AT1G13320.2p  transcript_id AT1G13320.2  protein_id AT1G13320.2p  transcript_id AT1G13320.2  
At1g13330	chr1:004568008	0.0	W/4568008-4568035,4568143-4568168,4568529-4568796,4568883-4568953,4569040-4569228,4569312-4569410	AT1G13330.1 CDS  gene_syn T6J4.9, T6J4_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tat binding protein 1-interacting (InterPro:IPR010776); Has 2425 Blast hits to 2142 proteins in 283 species: Archae - 50; Bacteria - 240; Metazoa - 929; Fungi - 179; Plants - 47; Viruses - 23; Other Eukaryotes - 957 (source: NCBI BLink).  protein_id AT1G13330.1p  transcript_id AT1G13330.1  protein_id AT1G13330.1p  transcript_id AT1G13330.1  
At1g13340	chr1:004569622	0.0	C/4569622-4570269,4570350-4570469,4570582-4571043	AT1G13340.1 CDS  gene_syn T6J4.22, T6J4_22  go_process response to oxidative stress|GO:0006979|18614705|IMP  product unknown protein  note unknown protein; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34220.2); Has 416 Blast hits to 416 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 88; Plants - 145; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G13340.1p  transcript_id AT1G13340.1  protein_id AT1G13340.1p  transcript_id AT1G13340.1  
At1g13350	chr1:004572502	0.0	C/4572502-4572932,4573032-4573146,4573225-4573516,4573631-4573787,4573960-4574044,4574380-4574448,4574535-4574773,4575145-4575305,4575408-4575835,4576239-4576547	AT1G13350.1 CDS  gene_syn T6J4.10, T6J4_10  go_component nucleus|GO:0005634|14617066|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_function protein kinase activity|GO:0004672||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G53640.1); Has 80312 Blast hits to 71745 proteins in 1717 species: Archae - 65; Bacteria - 5105; Metazoa - 38133; Fungi - 9588; Plants - 8768; Viruses - 394; Other Eukaryotes - 18259 (source: NCBI BLink).  protein_id AT1G13350.1p  transcript_id AT1G13350.1  protein_id AT1G13350.1p  transcript_id AT1G13350.1  
At1g13360	chr1:004577229	0.0	C/4577229-4577813	AT1G13360.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 35 Blast hits to 35 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13360.1p  transcript_id AT1G13360.1  protein_id AT1G13360.1p  transcript_id AT1G13360.1  
At1g13370	chr1:004587926	0.0	C/4587926-4588096,4588202-4588292,4588374-4588522	AT1G13370.1 CDS  gene_syn T6J4.12, T6J4_12  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process nucleosome assembly|GO:0006334||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  product histone H3, putative  note histone H3, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, chloroplast, nucleosome; EXPRESSED IN: flower, inflorescence, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10206 Blast hits to 10203 proteins in 5279 species: Archae - 0; Bacteria - 0; Metazoa - 7337; Fungi - 1299; Plants - 998; Viruses - 0; Other Eukaryotes - 572 (source: NCBI BLink).  protein_id AT1G13370.1p  transcript_id AT1G13370.1  protein_id AT1G13370.1p  transcript_id AT1G13370.1  
At1g13380	chr1:004589218	0.0	C/4589218-4589476,4589663-4589868,4590261-4590362	AT1G13380.1 CDS  gene_syn T6J4.13, T6J4_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27435.1); Has 150 Blast hits to 150 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13380.1p  transcript_id AT1G13380.1  protein_id AT1G13380.1p  transcript_id AT1G13380.1  
At1g13390	chr1:004592829	0.0	C/4592829-4593140,4593245-4593308,4593395-4593549	AT1G13390.1 CDS  gene_syn T6J4.14, T6J4_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 53 Blast hits to 53 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13390.1p  transcript_id AT1G13390.1  protein_id AT1G13390.1p  transcript_id AT1G13390.1  
At1g13390	chr1:004592829	0.0	C/4592829-4593140,4593245-4593308,4593395-4593549	AT1G13390.2 CDS  gene_syn T6J4.14, T6J4_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 53 Blast hits to 53 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13390.2p  transcript_id AT1G13390.2  protein_id AT1G13390.2p  transcript_id AT1G13390.2  
At1g13400	chr1:004597784	0.0	W/4597784-4597785,4597890-4597996,4598235-4598348,4598426-4598513,4598599-4598911	AT1G13400.1 CDS  gene_syn JAGGED-LIKE, JGL, NUB, NUBBIN, T6J4.23, T6J4_23  gene NUB  function Along with JAG, it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background.  go_component intracellular|GO:0005622||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process carpel development|GO:0048440|16554365|IGI  go_process stamen development|GO:0048443|16554365|IGI  go_process anther development|GO:0048653|16554365|IGI  go_function nucleic acid binding|GO:0003676||ISS  go_function zinc ion binding|GO:0008270||ISS  product NUB (NUBBIN); nucleic acid binding / zinc ion binding  note NUBBIN (NUB); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: stamen development, anther development, carpel development; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: JAG (JAGGED); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G68480.1); Has 258 Blast hits to 258 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G13400.1p  transcript_id AT1G13400.1  protein_id AT1G13400.1p  transcript_id AT1G13400.1  
At1g13410	chr1:004601526	0.0	W/4601526-4601649,4601874-4603174	AT1G13410.1 CDS  gene_syn T6J4.15, T6J4_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G02750.1); Has 13539 Blast hits to 4793 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 35; Plants - 13298; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT1G13410.1p  transcript_id AT1G13410.1  protein_id AT1G13410.1p  transcript_id AT1G13410.1  
At1g13420	chr1:004604871	0.0	W/4604871-4605866	AT1G13420.1 CDS  gene_syn ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ATST4B, ST4B, SULFOTRANSFERASE 4B, T6J4.16, T6J4_16  gene ST4B  function Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.  go_component cellular_component|GO:0005575||ND  go_process response to cytokinin stimulus|GO:0009735|17039368|IEP  go_function sulfotransferase activity|GO:0008146||ISS  go_function brassinosteroid sulfotransferase activity|GO:0080118|17039368|IDA  product ST4B (SULFOTRANSFERASE 4B); brassinosteroid sulfotransferase/ sulfotransferase  note SULFOTRANSFERASE 4B (ST4B); FUNCTIONS IN: sulfotransferase activity, brassinosteroid sulfotransferase activity; INVOLVED IN: response to cytokinin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: ST4C (SULFOTRANSFERASE 4C); brassinosteroid sulfotransferase/ sulfotransferase (TAIR:AT1G13430.1); Has 2237 Blast hits to 2200 proteins in 149 species: Archae - 0; Bacteria - 158; Metazoa - 1449; Fungi - 1; Plants - 310; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G13420.1p  transcript_id AT1G13420.1  protein_id AT1G13420.1p  transcript_id AT1G13420.1  
At1g13430	chr1:004606530	0.0	W/4606530-4607585	AT1G13430.1 CDS  gene_syn ARABIDOPSIS THALIANA SULFOTRANSFERASE 4C, ATST4C, ST4C, SULFOTRANSFERASE 4C, T6J4.24, T6J4_24  gene ST4C  function Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4C is expressed in the roots and transcript levels rise in response to cytokinin treatment.  go_component cellular_component|GO:0005575||ND  go_process response to cytokinin stimulus|GO:0009735|17039368|IEP  go_function sulfotransferase activity|GO:0008146||ISS  go_function brassinosteroid sulfotransferase activity|GO:0080118|17039368|IDA  product ST4C (SULFOTRANSFERASE 4C); brassinosteroid sulfotransferase/ sulfotransferase  note SULFOTRANSFERASE 4C (ST4C); FUNCTIONS IN: sulfotransferase activity, brassinosteroid sulfotransferase activity; INVOLVED IN: response to cytokinin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: ST4A (SULFOTRANSFERASE 4A); brassinosteroid sulfotransferase/ sulfotransferase (TAIR:AT2G14920.1); Has 2134 Blast hits to 2101 proteins in 132 species: Archae - 0; Bacteria - 109; Metazoa - 1420; Fungi - 1; Plants - 308; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT1G13430.1p  transcript_id AT1G13430.1  protein_id AT1G13430.1p  transcript_id AT1G13430.1  
At1g13440	chr1:004608465	0.0	C/4608465-4608597,4608691-4608774,4608863-4609005,4609092-4609189,4609275-4609321,4609506-4609582,4609669-4609768,4609860-4609975,4610176-4610276,4610368-4610397,4610491-4610494	AT1G13440.2 CDS  gene_syn GAPC-2, GAPC2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2, T6J4.17, T6J4_17  gene GAPC2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12953116|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|15533878|TAS  go_process gluconeogenesis|GO:0006094|15533878|TAS  go_process glycolysis|GO:0006096|15533878|TAS  go_process glycolysis|GO:0006096||ISS  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2 (GAPC2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: cytosol, mitochondrion, chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1); glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (TAIR:AT3G04120.1); Has 17531 Blast hits to 17522 proteins in 4026 species: Archae - 21; Bacteria - 6600; Metazoa - 1428; Fungi - 1937; Plants - 2582; Viruses - 0; Other Eukaryotes - 4963 (source: NCBI BLink).  protein_id AT1G13440.2p  transcript_id AT1G13440.2  protein_id AT1G13440.2p  transcript_id AT1G13440.2  
At1g13440	chr1:004608465	0.0	C/4608465-4608597,4608691-4608774,4608863-4609005,4609092-4609189,4609275-4609335,4609436-4609582,4609669-4609768,4609860-4609975,4610176-4610276,4610368-4610397,4610491-4610494	AT1G13440.1 CDS  gene_syn GAPC-2, GAPC2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C-2, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2, T6J4.17, T6J4_17  gene GAPC2  go_component cell wall|GO:0005618|16287169|IDA  go_component nucleus|GO:0005634|14617066|IDA  go_component nucleolus|GO:0005730|15496452|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|12953116|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|15533878|TAS  go_process gluconeogenesis|GO:0006094|15533878|TAS  go_process glycolysis|GO:0006096|15533878|TAS  go_process glycolysis|GO:0006096||ISS  go_process response to oxidative stress|GO:0006979|12492832|IDA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2 (GAPC2); FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1); glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (TAIR:AT3G04120.1); Has 17650 Blast hits to 17639 proteins in 4048 species: Archae - 58; Bacteria - 6630; Metazoa - 1441; Fungi - 1939; Plants - 2582; Viruses - 0; Other Eukaryotes - 5000 (source: NCBI BLink).  protein_id AT1G13440.1p  transcript_id AT1G13440.1  protein_id AT1G13440.1p  transcript_id AT1G13440.1  
At1g13448	chr1:004612243	0.0	W/4612243-4612929	AT1G13448.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G13450  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G13448.1  
At1g13450	chr1:004612999	0.0	C/4612999-4613198,4613286-4613516,4613755-4613889,4614198-4614236,4614500-4615115	AT1G13450.1 CDS  gene_syn T6J4.18, T6J4_18  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA binding protein GT-1  note DNA binding protein GT-1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA-binding protein GT-1-related (TAIR:AT3G25990.1); Has 338 Blast hits to 291 proteins in 46 species: Archae - 0; Bacteria - 1; Metazoa - 88; Fungi - 2; Plants - 245; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G13450.1p  transcript_id AT1G13450.1  protein_id AT1G13450.1p  transcript_id AT1G13450.1  
At1g13450	chr1:004612999	0.0	C/4612999-4613198,4613286-4613516,4614198-4614236,4614500-4615115	AT1G13450.2 CDS  gene_syn T6J4.18, T6J4_18  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA binding protein GT-1  note DNA binding protein GT-1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA-binding protein GT-1-related (TAIR:AT3G25990.1); Has 351 Blast hits to 304 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 2; Plants - 248; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G13450.2p  transcript_id AT1G13450.2  protein_id AT1G13450.2p  transcript_id AT1G13450.2  
At1g13450	chr1:004613708	0.0	C/4613708-4613889,4614198-4614236,4614500-4615115	AT1G13450.3 CDS  gene_syn T6J4.18, T6J4_18  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA binding protein GT-1  note DNA binding protein GT-1; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: DNA-binding protein GT-1-related (TAIR:AT3G25990.1); Has 339 Blast hits to 292 proteins in 45 species: Archae - 0; Bacteria - 1; Metazoa - 88; Fungi - 3; Plants - 247; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13450.3p  transcript_id AT1G13450.3  protein_id AT1G13450.3p  transcript_id AT1G13450.3  
At1g13460	chr1:004616504	0.0	W/4616504-4617667,4617866-4618180	AT1G13460.1 CDS  gene_syn T6J4.19, T6J4_19  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_component chloroplast|GO:0009507||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, protein phosphatase type 2A complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT3G26020.2); Has 867 Blast hits to 858 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 493; Fungi - 99; Plants - 156; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G13460.1p  transcript_id AT1G13460.1  protein_id AT1G13460.1p  transcript_id AT1G13460.1  
At1g13460	chr1:004616504	0.0	W/4616504-4617667,4617866-4618180	AT1G13460.2 CDS  gene_syn T6J4.19, T6J4_19  go_component protein phosphatase type 2A complex|GO:0000159||IEA  go_component chloroplast|GO:0009507||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein phosphatase type 2A regulator activity|GO:0008601||IEA  go_component protein phosphatase type 2A complex|GO:0000159||ISS  go_process signal transduction|GO:0007165||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601||ISS  product serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative  note serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, protein phosphatase type 2A complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B , putative (TAIR:AT3G26020.2); Has 867 Blast hits to 858 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 493; Fungi - 99; Plants - 156; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G13460.2p  transcript_id AT1G13460.2  protein_id AT1G13460.2p  transcript_id AT1G13460.2  
At1g13470	chr1:004620322	0.0	C/4620322-4621153,4621235-4621542	AT1G13470.1 CDS  gene_syn T6J4.20, T6J4_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13520.1); Has 56 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13470.1p  transcript_id AT1G13470.1  protein_id AT1G13470.1p  transcript_id AT1G13470.1  
At1g13480	chr1:004622783	0.0	C/4622783-4623626,4623724-4624043	AT1G13480.1 CDS  gene_syn T6J4.21, T6J4_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13520.1); Has 67 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13480.1p  transcript_id AT1G13480.1  protein_id AT1G13480.1p  transcript_id AT1G13480.1  
At1g13485	chr1:004624171	0.0	C/4624171-4624344	AT1G13485.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G13485.1p  transcript_id AT1G13485.1  protein_id AT1G13485.1p  transcript_id AT1G13485.1  
At1g13490	chr1:004624715	0.0	C/4624715-4625498,4625664-4625763,4625857-4626064	AT1G13490.1 CDS  gene_syn F13B4.1, F13B4_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13500.1); Has 57 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13490.1p  transcript_id AT1G13490.1  protein_id AT1G13490.1p  transcript_id AT1G13490.1  
At1g13500	chr1:004627789	0.0	C/4627789-4628635,4628763-4628862,4628956-4629169	AT1G13500.1 CDS  gene_syn F13B4.2, F13B4_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13530.1); Has 57 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13500.1p  transcript_id AT1G13500.1  protein_id AT1G13500.1p  transcript_id AT1G13500.1  
At1g13510	chr1:004629459	0.0	C/4629459-4630281,4630368-4630687	AT1G13510.1 CDS  gene_syn F13B4.15, F13B4_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13540.1); Has 57 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13510.1p  transcript_id AT1G13510.1  protein_id AT1G13510.1p  transcript_id AT1G13510.1  
At1g13520	chr1:004631857	0.0	C/4631857-4632700,4632904-4633223	AT1G13520.1 CDS  gene_syn F13B4.3, F13B4_3  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13480.1); Has 56 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13520.1p  transcript_id AT1G13520.1  protein_id AT1G13520.1p  transcript_id AT1G13520.1  
At1g13530	chr1:004633740	0.0	C/4633740-4634577,4634707-4634818,4634922-4635129	AT1G13530.1 CDS  gene_syn F13B4.17, F13B4_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13500.1); Has 57 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13530.1p  transcript_id AT1G13530.1  protein_id AT1G13530.1p  transcript_id AT1G13530.1  
At1g13540	chr1:004635474	0.0	C/4635474-4636296,4636386-4636708	AT1G13540.1 CDS  gene_syn F13B4.29, F13B4_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13510.1); Has 56 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13540.1p  transcript_id AT1G13540.1  protein_id AT1G13540.1p  transcript_id AT1G13540.1  
At1g13550	chr1:004637072	0.0	C/4637072-4637921,4637999-4638315	AT1G13550.1 CDS  gene_syn F13B4.4, F13B4_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13480.1); Has 56 Blast hits to 53 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13550.1p  transcript_id AT1G13550.1  protein_id AT1G13550.1p  transcript_id AT1G13550.1  
At1g13560	chr1:004638834	0.0	C/4638834-4638855,4638941-4639013,4639120-4639172,4639257-4639315,4639411-4639473,4639570-4639654,4639746-4639786,4639867-4639930,4640046-4640115,4640223-4640291,4640421-4640515,4640594-4640694,4640781-4640803,4640890-4640965,4641069-4641146,4641276-4641326,4641419-4641428,4641555-4641691	AT1G13560.1 CDS  gene_syn AAPT1, AMINOALCOHOLPHOSPHOTRANSFERASE, AMINOALCOHOLPHOSPHOTRANSFERASE 1, F13B4.5, F13B4_5  gene AAPT1  function Encodes aminoalcoholphosphotransferase AAPT1.  go_component membrane|GO:0016020||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidyltransferase activity|GO:0030572||ISS  product AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups  note AMINOALCOHOLPHOSPHOTRANSFERASE 1 (AAPT1); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (TAIR:AT3G25585.4); Has 737 Blast hits to 729 proteins in 170 species: Archae - 4; Bacteria - 20; Metazoa - 344; Fungi - 148; Plants - 49; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).  protein_id AT1G13560.1p  transcript_id AT1G13560.1  protein_id AT1G13560.1p  transcript_id AT1G13560.1  
At1g13560	chr1:004638834	0.0	C/4638834-4638855,4638941-4639013,4639120-4639172,4639257-4639315,4639411-4639473,4639570-4639654,4639746-4639786,4639867-4639930,4640046-4640115,4640223-4640291,4640421-4640515,4640594-4640694,4640781-4640803,4640890-4640965,4641069-4641146,4641276-4641326,4641546-4641563	AT1G13560.2 CDS  gene_syn AAPT1, AMINOALCOHOLPHOSPHOTRANSFERASE, AMINOALCOHOLPHOSPHOTRANSFERASE 1, F13B4.5, F13B4_5  gene AAPT1  function Encodes aminoalcoholphosphotransferase AAPT1.  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process phospholipid biosynthetic process|GO:0008654||IEA  go_function phosphotransferase activity, for other substituted phosphate groups|GO:0016780||IEA  go_process phospholipid biosynthetic process|GO:0008654||ISS  go_function phosphatidyltransferase activity|GO:0030572||ISS  product AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups  note AMINOALCOHOLPHOSPHOTRANSFERASE 1 (AAPT1); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase/ phosphotransferase, for other substituted phosphate groups (TAIR:AT3G25585.4); Has 686 Blast hits to 680 proteins in 162 species: Archae - 0; Bacteria - 8; Metazoa - 340; Fungi - 146; Plants - 49; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G13560.2p  transcript_id AT1G13560.2  protein_id AT1G13560.2p  transcript_id AT1G13560.2  
At1g13570	chr1:004642528	0.0	C/4642528-4642818,4642900-4643058,4643130-4643930	AT1G13570.1 CDS  gene_syn F13B4.6, F13B4_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56370.2); Has 1284 Blast hits to 1263 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1284; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13570.1p  transcript_id AT1G13570.1  protein_id AT1G13570.1p  transcript_id AT1G13570.1  
At1g13580	chr1:004645006	0.0	C/4645006-4645037,4645123-4645307,4645390-4645575,4645681-4645836,4645926-4646155,4646628-4646765	AT1G13580.2 CDS  gene_syn F13B4.7, F13B4_7, LAG1 LONGEVITY ASSURANCE HOMOLOG 3, LAG13  gene LAG13  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_function molecular_function|GO:0003674||ND  product LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)  note LAG1 LONGEVITY ASSURANCE HOMOLOG 3 (LAG13); FUNCTIONS IN: molecular_function unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 (TAIR:AT3G25540.1); Has 931 Blast hits to 931 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 500; Fungi - 203; Plants - 101; Viruses - 2; Other Eukaryotes - 125 (source: NCBI BLink).  protein_id AT1G13580.2p  transcript_id AT1G13580.2  protein_id AT1G13580.2p  transcript_id AT1G13580.2  
At1g13580	chr1:004645380	0.0	C/4645380-4645575,4645681-4645836,4645926-4646155,4646628-4646765	AT1G13580.1 CDS  gene_syn F13B4.7, F13B4_7, LAG1 LONGEVITY ASSURANCE HOMOLOG 3, LAG13  gene LAG13  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_function molecular_function|GO:0003674||ND  product LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)  note LAG1 LONGEVITY ASSURANCE HOMOLOG 3 (LAG13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 (TAIR:AT3G25540.1); Has 919 Blast hits to 919 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 499; Fungi - 203; Plants - 93; Viruses - 2; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G13580.1p  transcript_id AT1G13580.1  protein_id AT1G13580.1p  transcript_id AT1G13580.1  
At1g13590	chr1:004647979	0.0	W/4647979-4648104,4648475-4648612	AT1G13590.1 CDS  gene_syn ATPSK1, F21F23.2, PHYTOSULFOKINE 1 PRECURSOR  gene ATPSK1  function Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.  go_function growth factor activity|GO:0008083||IEA  go_component extracellular matrix|GO:0031012|11706167|ISS  go_process cell growth|GO:0016049|11706167|ISS  product ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR); growth factor  note PHYTOSULFOKINE 1 PRECURSOR (ATPSK1); FUNCTIONS IN: growth factor activity; INVOLVED IN: cell growth; LOCATED IN: extracellular matrix; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Phytosulfokine (InterPro:IPR009438); Has 49 Blast hits to 49 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13590.1p  transcript_id AT1G13590.1  protein_id AT1G13590.1p  transcript_id AT1G13590.1  
At1g13600	chr1:004650787	0.0	C/4650787-4651377	AT1G13600.1 CDS  gene_syn Arabidopsis thaliana basic leucine-zipper 58, AtbZIP58, F21F23.3  gene AtbZIP58  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein homodimerization activity|GO:0042803|16709202|IPI  go_function protein heterodimerization activity|GO:0046982|16709202|IPI  product AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor  note Arabidopsis thaliana basic leucine-zipper 58 (AtbZIP58); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48); DNA binding / transcription factor (TAIR:AT2G04038.1); Has 1363 Blast hits to 1355 proteins in 113 species: Archae - 0; Bacteria - 6; Metazoa - 50; Fungi - 35; Plants - 1186; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G13600.1p  transcript_id AT1G13600.1  protein_id AT1G13600.1p  transcript_id AT1G13600.1  
At1g13605	chr1:004658603	0.0	W/4658603-4658651,4658748-4659010	AT1G13605.1 CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13605.1p  transcript_id AT1G13605.1  protein_id AT1G13605.1p  transcript_id AT1G13605.1  
At1g13607	chr1:004660778	0.0	W/4660778-4660838,4660941-4661098	AT1G13607.1 CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13607.1p  transcript_id AT1G13607.1  protein_id AT1G13607.1p  transcript_id AT1G13607.1  
At1g13608	chr1:004661682	0.0	W/4661682-4661726,4661838-4662029	AT1G13608.1 CDS  function Encodes a defensin-like (DEFL) family protein.  product unknown protein  note BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13609.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13608.1p  transcript_id AT1G13608.1  protein_id AT1G13608.1p  transcript_id AT1G13608.1  
At1g13609	chr1:004662818	0.0	W/4662818-4662878,4662971-4663146	AT1G13609.1 CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13609.1p  transcript_id AT1G13609.1  protein_id AT1G13609.1p  transcript_id AT1G13609.1  
At1g13610	chr1:004664008	0.0	C/4664008-4664080,4664203-4664573,4664673-4664720,4664822-4665053,4665276-4665312,4665665-4665680	AT1G13610.2 CDS  gene_syn F21F23.4  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: cotyledon, hypocotyl, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30380.2); Has 2019 Blast hits to 2016 proteins in 366 species: Archae - 0; Bacteria - 491; Metazoa - 374; Fungi - 64; Plants - 123; Viruses - 3; Other Eukaryotes - 964 (source: NCBI BLink).  protein_id AT1G13610.2p  transcript_id AT1G13610.2  protein_id AT1G13610.2p  transcript_id AT1G13610.2  
At1g13610	chr1:004664008	0.0	C/4664008-4664080,4664203-4664573,4664673-4664720,4664822-4665058,4665276-4665312,4665665-4665975	AT1G13610.1 CDS  gene_syn F21F23.4  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: cotyledon, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30380.2); Has 3358 Blast hits to 3354 proteins in 579 species: Archae - 6; Bacteria - 974; Metazoa - 587; Fungi - 165; Plants - 174; Viruses - 11; Other Eukaryotes - 1441 (source: NCBI BLink).  protein_id AT1G13610.1p  transcript_id AT1G13610.1  protein_id AT1G13610.1p  transcript_id AT1G13610.1  
At1g13620	chr1:004668494	0.0	W/4668494-4668572,4668812-4668858,4669022-4669225	AT1G13620.1 CDS  gene_syn F21F23.5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04025.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13620.1p  transcript_id AT1G13620.1  protein_id AT1G13620.1p  transcript_id AT1G13620.1  
At1g13630	chr1:004669784	0.0	C/4669784-4669852,4670223-4670354,4670443-4672315,4672480-4672826	AT1G13630.1 CDS  gene_syn F21F23.6, F21F23_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G22470.1); Has 23967 Blast hits to 5877 proteins in 185 species: Archae - 3; Bacteria - 26; Metazoa - 708; Fungi - 595; Plants - 21695; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).  protein_id AT1G13630.1p  transcript_id AT1G13630.1  protein_id AT1G13630.1p  transcript_id AT1G13630.1  
At1g13635	chr1:004674248	0.0	W/4674248-4674620,4674831-4674888,4675072-4675155,4675241-4675382,4675506-4675784	AT1G13635.1 CDS  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA  go_component cellular_component|GO:0005575||ND  go_function catalytic activity|GO:0003824||ISS  product methyladenine glycosylase family protein  note methyladenine glycosylase family protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: methyladenine glycosylase family protein (TAIR:AT5G57970.2); Has 1978 Blast hits to 1978 proteins in 801 species: Archae - 7; Bacteria - 1558; Metazoa - 4; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT1G13635.1p  transcript_id AT1G13635.1  protein_id AT1G13635.1p  transcript_id AT1G13635.1  
At1g13640	chr1:004677276	0.0	C/4677276-4679144	AT1G13640.1 CDS  gene_syn F21F23.8, F21F23_8  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT2G03890.1); Has 401 Blast hits to 395 proteins in 120 species: Archae - 0; Bacteria - 2; Metazoa - 139; Fungi - 53; Plants - 136; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G13640.1p  transcript_id AT1G13640.1  protein_id AT1G13640.1p  transcript_id AT1G13640.1  
At1g13650	chr1:004680571	0.0	C/4680571-4680928,4681011-4681492,4681883-4681903	AT1G13650.1 CDS  gene_syn F21F23.9, F21F23_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4); Has 3725 Blast hits to 1574 proteins in 203 species: Archae - 2; Bacteria - 168; Metazoa - 816; Fungi - 289; Plants - 39; Viruses - 14; Other Eukaryotes - 2397 (source: NCBI BLink).  protein_id AT1G13650.1p  transcript_id AT1G13650.1  protein_id AT1G13650.1p  transcript_id AT1G13650.1  
At1g13650	chr1:004680571	0.0	C/4680571-4680928,4681011-4681492,4681883-4681903	AT1G13650.2 CDS  gene_syn F21F23.9, F21F23_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4); Has 3725 Blast hits to 1574 proteins in 203 species: Archae - 2; Bacteria - 168; Metazoa - 816; Fungi - 289; Plants - 39; Viruses - 14; Other Eukaryotes - 2397 (source: NCBI BLink).  protein_id AT1G13650.2p  transcript_id AT1G13650.2  protein_id AT1G13650.2p  transcript_id AT1G13650.2  
At1g13660	chr1:004683171	0.0	W/4683171-4685640	AT1G13660.1 mRNA_TE_gene  pseudo  gene_syn F21F23.10  note Transposable element gene, Mutator-like transposase family, has a 2.6e-36 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g13670	chr1:004688201	0.0	W/4688201-4688878	AT1G13670.1 CDS  gene_syn F21F23.11, F21F23_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13670.1p  transcript_id AT1G13670.1  protein_id AT1G13670.1p  transcript_id AT1G13670.1  
At1g13680	chr1:004690409	0.0	W/4690409-4690501,4690703-4690819,4691247-4691363,4691451-4691549,4691928-4692231,4692319-4692542,4692616-4692702	AT1G13680.1 CDS  gene_syn F21F23.12, F21F23_12  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_function phosphoric diester hydrolase activity|GO:0008081||IEA  product phospholipase C/ phosphoric diester hydrolase  note phospholipase C/ phosphoric diester hydrolase; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling cascade, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: phospholipase C/ phosphoric diester hydrolase (TAIR:AT4G36945.1); Has 271 Blast hits to 269 proteins in 57 species: Archae - 0; Bacteria - 34; Metazoa - 6; Fungi - 109; Plants - 78; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G13680.1p  transcript_id AT1G13680.1  protein_id AT1G13680.1p  transcript_id AT1G13680.1  
At1g13690	chr1:004693380	0.0	W/4693380-4693695,4693962-4694179	AT1G13690.1 CDS  gene_syn ATE1, ATPASE E1, F21F23.13, F21F23_13, GRPE HOMOLOG  gene ATE1  function AtE1 - stimulates the ATPase activity of DnaK/DnaJ  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product ATE1; nucleic acid binding / nucleotide binding  note ATE1; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding (TAIR:AT5G61030.1); Has 10977 Blast hits to 9311 proteins in 509 species: Archae - 8; Bacteria - 842; Metazoa - 6064; Fungi - 1223; Plants - 1766; Viruses - 0; Other Eukaryotes - 1074 (source: NCBI BLink).  protein_id AT1G13690.1p  transcript_id AT1G13690.1  protein_id AT1G13690.1p  transcript_id AT1G13690.1  
At1g13700	chr1:004694475	0.0	C/4694475-4694972,4695209-4695344,4695428-4695600	AT1G13700.1 CDS  gene_syn F21F23.14, F21F23_14  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_function 6-phosphogluconolactonase activity|GO:0017057||IEA  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function catalytic activity|GO:0003824||ISS  product glucosamine/galactosamine-6-phosphate isomerase family protein  note glucosamine/galactosamine-6-phosphate isomerase family protein; FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glucosamine/galactosamine-6-phosphate isomerase (InterPro:IPR006148), 6-phosphogluconolactonase (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: emb2024 (embryo defective 2024); 6-phosphogluconolactonase/ catalytic (TAIR:AT5G24400.1); Has 2364 Blast hits to 2364 proteins in 829 species: Archae - 0; Bacteria - 1366; Metazoa - 148; Fungi - 158; Plants - 85; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT1G13700.1p  transcript_id AT1G13700.1  protein_id AT1G13700.1p  transcript_id AT1G13700.1  
At1g13710	chr1:004702932	0.0	C/4702932-4703546,4703654-4704592	AT1G13710.1 CDS  gene_syn CYP78A5, F21F23.15, F21F23_15  gene CYP78A5  function member of CYP78A  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP78A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP78A5; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP78A10; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT1G74110.1); Has 22175 Blast hits to 22105 proteins in 1158 species: Archae - 21; Bacteria - 1693; Metazoa - 9981; Fungi - 4229; Plants - 5511; Viruses - 3; Other Eukaryotes - 737 (source: NCBI BLink).  protein_id AT1G13710.1p  transcript_id AT1G13710.1  protein_id AT1G13710.1p  transcript_id AT1G13710.1  
At1g13720	chr1:004709635	0.0	W/4709635-4709706	AT1G13720.1 tRNA  gene_syn 61268.TRNA-THR-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Thr (anticodon: CGT)  transcript_id AT1G13720.1  
At1g13730	chr1:004710519	0.0	W/4710519-4710698,4710801-4711283,4711368-4711524,4711618-4711739,4711826-4711891,4711978-4712038,4712115-4712332	AT1G13730.1 CDS  gene_syn F21F23.16, F21F23_16  go_component intracellular|GO:0005622||IEA  go_process transport|GO:0006810||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process nucleocytoplasmic transport|GO:0006913||ISS  go_function RNA binding|GO:0003723||ISS  product nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein  note nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT2G03640.2); Has 3242 Blast hits to 3136 proteins in 308 species: Archae - 0; Bacteria - 191; Metazoa - 1766; Fungi - 539; Plants - 514; Viruses - 2; Other Eukaryotes - 230 (source: NCBI BLink).  protein_id AT1G13730.1p  transcript_id AT1G13730.1  protein_id AT1G13730.1p  transcript_id AT1G13730.1  
At1g13740	chr1:004713969	0.0	W/4713969-4714599,4714743-4715158	AT1G13740.1 CDS  gene_syn ABI FIVE BINDING PROTEIN 2, AFP2, F21F23.17, F21F23_17  gene AFP2  function Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent.  go_component nucleus|GO:0005634|18484180|IDA  go_process response to stress|GO:0006950|18484180|IMP  go_process response to abscisic acid stimulus|GO:0009737|18484180|IMP  go_function molecular_function|GO:0003674||ND  product AFP2 (ABI FIVE BINDING PROTEIN 2)  note ABI FIVE BINDING PROTEIN 2 (AFP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: AFP1 (ABI FIVE BINDING PROTEIN) (TAIR:AT1G69260.1); Has 110 Blast hits to 106 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 89; Viruses - 3; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G13740.1p  transcript_id AT1G13740.1  protein_id AT1G13740.1p  transcript_id AT1G13740.1  
At1g13750	chr1:004715490	0.0	C/4715490-4715795,4715885-4716320,4716404-4716609,4716703-4716835,4716923-4717134,4717207-4717299,4717397-4717519,4717605-4717671,4717749-4717840,4717918-4718091	AT1G13750.1 CDS  gene_syn F21F23.18, F21F23_18  go_component endomembrane system|GO:0012505||IEA  go_function acid phosphatase activity|GO:0003993||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function metal ion binding|GO:0046872||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Fibronectin, type III (InterPro:IPR003961), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP27 (PURPLE ACID PHOSPHATASE 27); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT5G50400.1); Has 1113 Blast hits to 1105 proteins in 225 species: Archae - 0; Bacteria - 236; Metazoa - 176; Fungi - 60; Plants - 415; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).  protein_id AT1G13750.1p  transcript_id AT1G13750.1  protein_id AT1G13750.1p  transcript_id AT1G13750.1  
At1g13755	chr1:004718761	0.0	C/4718761-4719062,4719181-4719238	AT1G13755.1 CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13755.1p  transcript_id AT1G13755.1  protein_id AT1G13755.1p  transcript_id AT1G13755.1  
At1g13760	chr1:004720365	0.0	C/4720365-4720423,4720963-4721101	AT1G13760.1 CDS  gene_syn F21F23.20, F21F23_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13760.1p  transcript_id AT1G13760.1  protein_id AT1G13760.1p  transcript_id AT1G13760.1  
At1g13770	chr1:004721717	0.0	W/4721717-4721838,4721948-4722005,4722086-4722145,4722222-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723611-4723749,4723821-4723864,4723966-4724153,4724247-4724345	AT1G13770.1 CDS  gene_syn F21F23.21, F21F23_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: RUS1 (ROOT UVB SENSITIVE 1) (TAIR:AT3G45890.1); Has 281 Blast hits to 281 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 45; Plants - 99; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G13770.1p  transcript_id AT1G13770.1  protein_id AT1G13770.1p  transcript_id AT1G13770.1  
At1g13770	chr1:004722243	0.0	W/4722243-4722260,4722351-4722413,4722514-4722570,4722683-4722746,4722842-4722925,4723018-4723100,4723191-4723320,4723396-4723488,4723611-4723749,4723821-4723864,4723966-4724153,4724247-4724345	AT1G13770.2 CDS  gene_syn F21F23.21, F21F23_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: RUS1 (ROOT UVB SENSITIVE 1) (TAIR:AT3G45890.1); Has 274 Blast hits to 274 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 45; Plants - 95; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G13770.2p  transcript_id AT1G13770.2  protein_id AT1G13770.2p  transcript_id AT1G13770.2  
At1g13780	chr1:004724681	0.0	W/4724681-4724692,4724773-4725708,4725797-4725937,4726033-4726314	AT1G13780.1 CDS  gene_syn F16A14.1, F16A14_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G27750.1); Has 1281 Blast hits to 1250 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1279; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G13780.1p  transcript_id AT1G13780.1  protein_id AT1G13780.1p  transcript_id AT1G13780.1  
At1g13790	chr1:004727438	0.0	W/4727438-4728656,4728748-4728929,4729015-4729083,4729186-4729479,4729692-4729901,4729993-4730229	AT1G13790.1 CDS  gene_syn F16A14.2, F16A14_2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH/XS domain-containing protein / XS zinc finger domain-containing protein  note XH/XS domain-containing protein / XS zinc finger domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379), Region of unknown function, putative Zinc finger, XS and XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT3G48670.2); Has 41322 Blast hits to 25026 proteins in 1173 species: Archae - 356; Bacteria - 3518; Metazoa - 21323; Fungi - 2409; Plants - 961; Viruses - 194; Other Eukaryotes - 12561 (source: NCBI BLink).  protein_id AT1G13790.1p  transcript_id AT1G13790.1  protein_id AT1G13790.1p  transcript_id AT1G13790.1  
At1g13800	chr1:004731056	0.0	C/4731056-4733707	AT1G13800.1 CDS  gene_syn F16A14.3, F16A14_3  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G26790.1); Has 26665 Blast hits to 5810 proteins in 174 species: Archae - 5; Bacteria - 22; Metazoa - 517; Fungi - 434; Plants - 24531; Viruses - 0; Other Eukaryotes - 1156 (source: NCBI BLink).  protein_id AT1G13800.1p  transcript_id AT1G13800.1  protein_id AT1G13800.1p  transcript_id AT1G13800.1  
At1g13810	chr1:004734088	0.0	W/4734088-4734119,4734285-4735164	AT1G13810.1 CDS  gene_syn F16A14.30, F16A14_30  go_function DNA binding|GO:0003677||IEA  go_function nuclease activity|GO:0004518||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding / nuclease  note DNA binding / nuclease; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease, phage-type/RecB, C-terminal (InterPro:IPR011604), Restriction endonuclease, type II-like, core (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: DNA binding / nuclease (TAIR:AT1G67660.2); Has 215 Blast hits to 215 proteins in 29 species: Archae - 0; Bacteria - 10; Metazoa - 26; Fungi - 0; Plants - 30; Viruses - 13; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT1G13810.1p  transcript_id AT1G13810.1  protein_id AT1G13810.1p  transcript_id AT1G13810.1  
At1g13820	chr1:004735622	0.0	W/4735622-4735804,4736054-4736148,4736214-4736311,4736416-4736465,4736543-4736638,4736743-4736832,4736960-4737052,4737133-4737228,4737312-4737377,4737465-4737617	AT1G13820.1 CDS  gene_syn F16A14.4, F16A14_4  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT5G39220.1); Has 5140 Blast hits to 5134 proteins in 762 species: Archae - 39; Bacteria - 3125; Metazoa - 236; Fungi - 50; Plants - 322; Viruses - 0; Other Eukaryotes - 1368 (source: NCBI BLink).  protein_id AT1G13820.1p  transcript_id AT1G13820.1  protein_id AT1G13820.1p  transcript_id AT1G13820.1  
At1g13830	chr1:004739999	0.0	C/4739999-4740260,4740339-4740375,4740461-4740703,4740875-4740926	AT1G13830.1 CDS  gene_syn F16A14.5, F16A14_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product beta-1,3-glucanase-related  note beta-1,3-glucanase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family protein 17 (TAIR:AT2G03505.1); Has 1380 Blast hits to 1160 proteins in 181 species: Archae - 6; Bacteria - 192; Metazoa - 167; Fungi - 74; Plants - 795; Viruses - 45; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G13830.1p  transcript_id AT1G13830.1  protein_id AT1G13830.1p  transcript_id AT1G13830.1  
At1g13840	chr1:004741999	0.0	W/4741999-4742071	AT1G13840.1 tRNA  gene_syn 60120.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT1G13840.1  
At1g13850	chr1:004743095	0.0	W/4743095-4743167	AT1G13850.1 tRNA  gene_syn 60120.TRNA-ALA-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT1G13850.1  
At1g13860	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745707	AT1G13860.2 CDS  gene_syn F16A14.7, F16A14_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G03480.1); Has 653 Blast hits to 633 proteins in 97 species: Archae - 2; Bacteria - 137; Metazoa - 0; Fungi - 2; Plants - 466; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G13860.2p  transcript_id AT1G13860.2  protein_id AT1G13860.2p  transcript_id AT1G13860.2  
At1g13860	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.1 CDS  gene_syn F16A14.7, F16A14_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G03480.1); Has 643 Blast hits to 634 proteins in 97 species: Archae - 2; Bacteria - 137; Metazoa - 0; Fungi - 2; Plants - 455; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G13860.1p  transcript_id AT1G13860.1  protein_id AT1G13860.1p  transcript_id AT1G13860.1  
At1g13860	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.3 CDS  gene_syn F16A14.7, F16A14_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G03480.1); Has 643 Blast hits to 634 proteins in 97 species: Archae - 2; Bacteria - 137; Metazoa - 0; Fungi - 2; Plants - 455; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G13860.3p  transcript_id AT1G13860.3  protein_id AT1G13860.3p  transcript_id AT1G13860.3  
At1g13860	chr1:004743754	0.0	C/4743754-4743903,4744001-4744133,4744261-4744564,4744657-4744814,4744900-4745125,4745237-4745477,4745576-4745711,4745793-4746256	AT1G13860.4 CDS  gene_syn F16A14.7, F16A14_7  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G03480.1); Has 643 Blast hits to 634 proteins in 97 species: Archae - 2; Bacteria - 137; Metazoa - 0; Fungi - 2; Plants - 455; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G13860.4p  transcript_id AT1G13860.4  protein_id AT1G13860.4p  transcript_id AT1G13860.4  
At1g13870	chr1:004747437	0.0	C/4747437-4748345	AT1G13870.1 CDS  gene_syn DEFORMED ROOTS AND LEAVES 1, DRL1, F16A14.8, F16A14_8  gene DRL1  function Encodes a homolog of the yeast TOT4/KTI12 protein. Yeast TOT4/KTI12 associates with Elongator, a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region, 4 to 6 long slender leaves followed by spike-like structures, short roots.  go_component cellular_component|GO:0005575||ND  go_process meristem structural organization|GO:0009933|12615938|IMP  go_process leaf development|GO:0048366|8392411|IMP  go_function calmodulin binding|GO:0005516|12615938|IDA  go_function purine nucleotide binding|GO:0017076|12615938|ISS  product DRL1 (DEFORMED ROOTS AND LEAVES 1); calmodulin binding / purine nucleotide binding  note DEFORMED ROOTS AND LEAVES 1 (DRL1); FUNCTIONS IN: purine nucleotide binding, calmodulin binding; INVOLVED IN: meristem structural organization, leaf development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin associated protein KTI12 (InterPro:IPR013641); Has 234 Blast hits to 232 proteins in 114 species: Archae - 3; Bacteria - 2; Metazoa - 100; Fungi - 85; Plants - 20; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G13870.1p  transcript_id AT1G13870.1  protein_id AT1G13870.1p  transcript_id AT1G13870.1  
At1g13880	chr1:004749603	0.0	W/4749603-4749747,4749838-4750967	AT1G13880.1 CDS  gene_syn F16A14.9, F16A14_9  go_function DNA binding|GO:0003677||IEA  go_process biological_process|GO:0008150||ND  product ELM2 domain-containing protein  note ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949); BEST Arabidopsis thaliana protein match is: myb family transcription factor / ELM2 domain-containing protein (TAIR:AT2G03470.2); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G13880.1p  transcript_id AT1G13880.1  protein_id AT1G13880.1p  transcript_id AT1G13880.1  
At1g13890	chr1:004751581	0.0	W/4751581-4751955,4752059-4752152,4752356-4752480,4752564-4752661,4752745-4752844	AT1G13890.1 CDS  gene_syn ATSNAP30, F16A14.10, F16A14_10, SNAP30, SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30  gene SNAP30  function Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.  go_component cellular_component|GO:0005575||ND  go_process membrane fusion|GO:0006944|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|ISS  product SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30); SNAP receptor  note SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30 (SNAP30); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33); SNAP receptor/ protein binding (TAIR:AT5G61210.1); Has 706 Blast hits to 706 proteins in 130 species: Archae - 0; Bacteria - 2; Metazoa - 484; Fungi - 61; Plants - 92; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G13890.1p  transcript_id AT1G13890.1  protein_id AT1G13890.1p  transcript_id AT1G13890.1  
At1g13900	chr1:004753494	0.0	C/4753494-4754768,4754859-4755554	AT1G13900.1 CDS  gene_syn F16A14.11, F16A14_11  go_component chloroplast|GO:0009507|15028209|IDA  go_function acid phosphatase activity|GO:0003993||IEA  go_function hydrolase activity|GO:0016787||IEA  go_function metal ion binding|GO:0046872||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: PAP9 (PURPLE ACID PHOSPHATASE 9); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G03450.1); Has 1052 Blast hits to 1042 proteins in 232 species: Archae - 0; Bacteria - 259; Metazoa - 179; Fungi - 58; Plants - 399; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G13900.1p  transcript_id AT1G13900.1  protein_id AT1G13900.1p  transcript_id AT1G13900.1  
At1g13910	chr1:004755955	0.0	W/4755955-4756051,4756124-4756271,4756356-4756427,4756559-4756630,4756700-4756771,4756848-4756991,4757082-4757162,4757227-4757298,4757381-4757452,4757554-4757625,4757724-4757814	AT1G13910.1 CDS  gene_syn F16A14.12, F16A14_12  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT5G61240.1); Has 54187 Blast hits to 17810 proteins in 751 species: Archae - 26; Bacteria - 3393; Metazoa - 14506; Fungi - 646; Plants - 32565; Viruses - 0; Other Eukaryotes - 3051 (source: NCBI BLink).  protein_id AT1G13910.1p  transcript_id AT1G13910.1  protein_id AT1G13910.1p  transcript_id AT1G13910.1  
At1g13920	chr1:004758188	0.0	W/4758188-4758213,4758299-4758396,4758488-4758645,4758736-4758835,4758924-4759302,4759374-4759455,4759560-4759754	AT1G13920.1 CDS  gene_syn F16A14.13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT1G69325.1); Has 1911 Blast hits to 1777 proteins in 229 species: Archae - 0; Bacteria - 162; Metazoa - 827; Fungi - 315; Plants - 235; Viruses - 3; Other Eukaryotes - 369 (source: NCBI BLink).  protein_id AT1G13920.1p  transcript_id AT1G13920.1  protein_id AT1G13920.1p  transcript_id AT1G13920.1  
At1g13930	chr1:004761091	0.0	W/4761091-4761558	AT1G13930.1 CDS  gene_syn F16A14.14  function Involved in response to salt stress. Knockout mutants are hypersensitive to salt stress.  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to salt stress|GO:0009651|18643972|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: chloroplast, chloroplast stroma, plasma membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: nodulin-related (TAIR:AT2G03440.1); Has 41 Blast hits to 41 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13930.1p  transcript_id AT1G13930.1  protein_id AT1G13930.1p  transcript_id AT1G13930.1  
At1g13940	chr1:004762703	0.0	C/4762703-4764768,4764878-4765589,4765684-4765923	AT1G13940.1 CDS  gene_syn F16A14.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69360.1); Has 116 Blast hits to 108 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G13940.1p  transcript_id AT1G13940.1  protein_id AT1G13940.1p  transcript_id AT1G13940.1  
At1g13950	chr1:004773631	0.0	W/4773631-4773750,4774022-4774144,4774238-4774294,4774368-4774442,4774567-4774668	AT1G13950.1 CDS  gene_syn ATELF5A-1, EIF-5A, EIF5A, ELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A, EUKARYOTIC ELONGATION FACTOR 5A-1, F16A14.17  gene ELF5A-1  function Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced.  go_function translation initiation factor activity|GO:0003743||IEA  go_component cellular_component|GO:0005575||ND  go_process translational initiation|GO:0006413||ISS  go_process xylem histogenesis|GO:0010089|18304977|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1); translation initiation factor  note EUKARYOTIC ELONGATION FACTOR 5A-1 (ELF5A-1); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: xylem histogenesis, translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation protein SH3-like, subgroup (InterPro:IPR014722), Eukaryotic initiation factor 5A hypusine (eIF-5A) (InterPro:IPR001884); BEST Arabidopsis thaliana protein match is: ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor (TAIR:AT1G69410.1); Has 1013 Blast hits to 1011 proteins in 302 species: Archae - 169; Bacteria - 0; Metazoa - 295; Fungi - 161; Plants - 196; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).  protein_id AT1G13950.1p  transcript_id AT1G13950.1  protein_id AT1G13950.1p  transcript_id AT1G13950.1  
At1g13960	chr1:004776622	0.0	W/4776622-4776955,4777711-4778416,4778499-4778663,4778785-4779043	AT1G13960.2 CDS  gene_syn F16A14.18, WRKY4  gene WRKY4  function Encodes WRKY DNA-binding protein 4 (WRKY4).  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|15705956|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY4; DNA binding / transcription factor  note WRKY4; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY3; transcription factor (TAIR:AT2G03340.1); Has 3438 Blast hits to 1847 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 6; Plants - 3345; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G13960.2p  transcript_id AT1G13960.2  protein_id AT1G13960.2p  transcript_id AT1G13960.2  
At1g13960	chr1:004776622	0.0	W/4776622-4777068,4777743-4778416,4778499-4778663,4778785-4779043	AT1G13960.1 CDS  gene_syn F16A14.18, WRKY4  gene WRKY4  function Encodes WRKY DNA-binding protein 4 (WRKY4).  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|15705956|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY4; DNA binding / transcription factor  note WRKY4; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY3; transcription factor (TAIR:AT2G03340.1); Has 3422 Blast hits to 1854 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 15; Plants - 3322; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G13960.1p  transcript_id AT1G13960.1  protein_id AT1G13960.1p  transcript_id AT1G13960.1  
At1g13970	chr1:004779742	0.0	C/4779742-4779852,4779950-4780072,4780166-4780360,4780439-4780739,4780830-4780968,4781060-4781329,4781414-4781500,4781594-4781882	AT1G13970.1 CDS  gene_syn F16A14.19  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29180.1); Has 129 Blast hits to 129 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 114; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G13970.1p  transcript_id AT1G13970.1  protein_id AT1G13970.1p  transcript_id AT1G13970.1  
At1g13980	chr1:004789587	0.0	W/4789587-4790324,4790780-4794397	AT1G13980.1 CDS  gene_syn EMB30, EMBRYO DEFECTIVE 30, F16A14.20, GN, GNOM, VAN7, VASCULAR NETWORK 7  gene GN  function Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions.  go_component intracellular|GO:0005622||IEA  go_process cytokinesis by cell plate formation|GO:0000911|8020095|IMP  go_process establishment of planar polarity|GO:0001736|17084699|IGI  go_process cell wall organization|GO:0007047|11090208|IMP  go_process cell adhesion|GO:0007155|11090208|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|8020095|IMP  go_process unidimensional cell growth|GO:0009826|8020095|IMP  go_process embryonic pattern specification|GO:0009880|8020095|IMP  go_process longitudinal axis specification|GO:0009942|8020095|IMP  go_process phloem or xylem histogenesis|GO:0010087|10887076|IMP  go_process lateral root primordium development|GO:0010386|18394892|IMP  go_process basipetal auxin transport|GO:0010540|18394892|IMP  go_process regulation of vesicle targeting, to, from or within Golgi|GO:0048209|16553903|TAS  go_process root hair cell differentiation|GO:0048765|17084699|IGI  go_function GTP:GDP antiporter activity|GO:0010292|10514379|IGI  go_function protein homodimerization activity|GO:0042803|18203920|IPI  product GN (GNOM); GTP:GDP antiporter/ protein homodimerization  note GNOM (GN); FUNCTIONS IN: GTP:GDP antiporter activity, protein homodimerization activity; INVOLVED IN: in 13 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: pattern formation protein, putative (TAIR:AT5G39500.1); Has 2176 Blast hits to 1836 proteins in 178 species: Archae - 0; Bacteria - 24; Metazoa - 1275; Fungi - 457; Plants - 123; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT1G13980.1p  transcript_id AT1G13980.1  protein_id AT1G13980.1p  transcript_id AT1G13980.1  
At1g13990	chr1:004794810	0.0	W/4794810-4795191,4795282-4795319,4795494-4795539,4795779-4795878,4795960-4796077,4796155-4796250,4796339-4796476	AT1G13990.2 CDS  gene_syn F7A19.8, F7A19_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT1G13990.2p  transcript_id AT1G13990.2  protein_id AT1G13990.2p  transcript_id AT1G13990.2  
At1g13990	chr1:004794810	0.0	W/4794810-4795191,4795282-4795319,4795494-4795565,4795779-4795816,4795915-4796077,4796155-4796250,4796339-4796476	AT1G13990.3 CDS  gene_syn F7A19.8, F7A19_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT1G13990.3p  transcript_id AT1G13990.3  protein_id AT1G13990.3p  transcript_id AT1G13990.3  
At1g13990	chr1:004794810	0.0	W/4794810-4795191,4795779-4795878,4795960-4796077,4796155-4796250,4796339-4796476	AT1G13990.1 CDS  gene_syn F7A19.8, F7A19_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G13990.1p  transcript_id AT1G13990.1  protein_id AT1G13990.1p  transcript_id AT1G13990.1  
At1g14000	chr1:004797606	0.0	W/4797606-4797923,4798032-4798106,4798364-4798480,4798583-4798677,4798803-4798923,4799002-4799081,4799169-4799228,4799318-4799439,4799543-4799628,4799730-4799845,4799917-4800043	AT1G14000.1 CDS  gene_syn F7A19.9, F7A19_9, VH1-INTERACTING KINASE, VIK  gene VIK  function Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling.  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process auxin mediated signaling pathway|GO:0009734|19000166|IMP  go_process brassinosteroid mediated signaling|GO:0009742|19000166|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|19000166|IMP  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function ATP binding|GO:0005524||ISS  product VIK (VH1-INTERACTING KINASE); ATP binding / protein kinase/ protein serine/threonine/tyrosine kinase  note VH1-INTERACTING KINASE (VIK); FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: brassinosteroid mediated signaling, auxin mediated signaling pathway, protein amino acid phosphorylation, leaf vascular tissue pattern formation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin protein kinase, putative (TAIR:AT3G58760.1); Has 102520 Blast hits to 97828 proteins in 3595 species: Archae - 88; Bacteria - 8567; Metazoa - 46209; Fungi - 8354; Plants - 19158; Viruses - 487; Other Eukaryotes - 19657 (source: NCBI BLink).  protein_id AT1G14000.1p  transcript_id AT1G14000.1  protein_id AT1G14000.1p  transcript_id AT1G14000.1  
At1g14010	chr1:004800385	0.0	C/4800385-4800529,4800626-4800702,4801289-4801498,4801584-4801790	AT1G14010.1 CDS  gene_syn F7A19.10, F7A19_10  go_process transport|GO:0006810||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: guard cell, callus; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G26690.1); Has 1149 Blast hits to 1147 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 587; Fungi - 291; Plants - 154; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G14010.1p  transcript_id AT1G14010.1  protein_id AT1G14010.1p  transcript_id AT1G14010.1  
At1g14020	chr1:004802930	0.0	W/4802930-4803188,4803269-4803336,4803422-4803510,4803603-4803765,4803873-4804162,4804252-4804456,4804564-4804721,4804844-4805111	AT1G14020.1 CDS  gene_syn F7A19.11, F7A19_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03280.1); Has 430 Blast hits to 422 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14020.1p  transcript_id AT1G14020.1  protein_id AT1G14020.1p  transcript_id AT1G14020.1  
At1g14030	chr1:004805493	0.0	C/4805493-4805708,4805789-4806193,4806282-4806404,4806520-4806731,4806858-4806886,4806977-4807440	AT1G14030.1 CDS  gene_syn F7A19.12, F7A19_12  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_function [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity|GO:0030785||IEA  go_function [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity|GO:0030785||ISS  product ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative  note ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative; FUNCTIONS IN: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco methyltransferase (InterPro:IPR011192), SET (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT3G07670.1); Has 838 Blast hits to 833 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 218; Plants - 233; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT1G14030.1p  transcript_id AT1G14030.1  protein_id AT1G14030.1p  transcript_id AT1G14030.1  
At1g14040	chr1:004810488	0.0	W/4810488-4811109,4811845-4812214,4812300-4812348,4812433-4812504,4812599-4812728,4812813-4812933,4813032-4813290,4813378-4813482,4813572-4813766,4813848-4814129,4814204-4814340,4814444-4814543	AT1G14040.1 CDS  gene_syn F7A19.13, F7A19_13  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  product unknown protein  note LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03240.1); Has 732 Blast hits to 696 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 238; Fungi - 246; Plants - 151; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G14040.1p  transcript_id AT1G14040.1  protein_id AT1G14040.1p  transcript_id AT1G14040.1  
At1g14048	chr1:004815683	0.0	C/4815683-4815988	AT1G14048.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14060.1); Has 26 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G14048.1p  transcript_id AT1G14048.1  protein_id AT1G14048.1p  transcript_id AT1G14048.1  
At1g14060	chr1:004817354	0.0	C/4817354-4817893	AT1G14060.1 CDS  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02210.1); Has 243 Blast hits to 215 proteins in 60 species: Archae - 0; Bacteria - 2; Metazoa - 93; Fungi - 27; Plants - 49; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G14060.1p  transcript_id AT1G14060.1  protein_id AT1G14060.1p  transcript_id AT1G14060.1  
At1g14070	chr1:004818548	0.0	W/4818548-4818611,4818685-4820150	AT1G14070.1 CDS  gene_syn F7A19.15, F7A19_15, FUT7  gene FUT7  function member of Xyloglucan fucosyltransferase family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT7; fucosyltransferase/ transferase, transferring glycosyl groups  note FUT7; FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: stem, cauline leaf, root; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT6 (FUCOSYLTRANSFERASE 6); fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G14080.1); Has 203 Blast hits to 198 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G14070.1p  transcript_id AT1G14070.1  protein_id AT1G14070.1p  transcript_id AT1G14070.1  
At1g14071	chr1:004820405	0.0	C/4820405-4820499	AT1G14071.1 miRNA  gene_syn MICRORNA830A, MIR830A  gene MIR830A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUUCUCCAAAUAGUUUAGGUU  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR830A (MICRORNA830A); miRNA  transcript_id AT1G14071.1  
At1g14080	chr1:004822580	0.0	W/4822580-4822688,4822768-4824218	AT1G14080.1 CDS  gene_syn ATFUT6, F7A19.16, F7A19_16, FUCOSYLTRANSFERASE 6, FUT6  gene FUT6  function member of Xyloglucan fucosyltransferase family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  go_function fucosyltransferase activity|GO:0008417||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product FUT6 (FUCOSYLTRANSFERASE 6); fucosyltransferase/ transferase, transferring glycosyl groups  note FUCOSYLTRANSFERASE 6 (FUT6); FUNCTIONS IN: transferase activity, transferring glycosyl groups, fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: stem, flower, root; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT4; fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT2G15390.2); Has 202 Blast hits to 197 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14080.1p  transcript_id AT1G14080.1  protein_id AT1G14080.1p  transcript_id AT1G14080.1  
At1g14090	chr1:004824433	0.0	C/4824433-4827436	AT1G14090.1 pseudogenic_transcript  pseudo  gene_syn F7A19.17, F7A19_17  note pseudogene, pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat; blastp match of 33% identity and 1.5e-16 P-value to GP|20219038|gb|AAM15782.1|AC104428_3|AC104428 Putative indole-3-acetate beta-glucosyltransferase {Oryza sativa (japonica cultivar-group)}  
At1g14100	chr1:004827961	0.0	W/4827961-4828066,4828143-4829587	AT1G14100.1 CDS  gene_syn FUCOSYLTRANSFERASE 8, FUT8  gene FUT8  function member of Glycosyltransferase Family- 37. FUT8 was previously associated to AT1G14110  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function galactoside 2-alpha-L-fucosyltransferase activity|GO:0008107||IEA  product FUT8 (FUCOSYLTRANSFERASE 8); galactoside 2-alpha-L-fucosyltransferase  note FUCOSYLTRANSFERASE 8 (FUT8); FUNCTIONS IN: galactoside 2-alpha-L-fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT7; fucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G14070.1); Has 202 Blast hits to 197 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14100.1p  transcript_id AT1G14100.1  protein_id AT1G14100.1p  transcript_id AT1G14100.1  
At1g14110	chr1:004830297	0.0	W/4830297-4830405,4830483-4831378,4831496-4831915	AT1G14110.1 CDS  gene_syn ATFUT9, F7A19.19, F7A19_19, FUCOSYLTRANSFERASE 9, FUT9  gene FUT9  function member of xyloglucan fucosyltransferase family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process cell wall biogenesis|GO:0042546||IEA  go_function fucosyltransferase activity|GO:0008417|11743104|ISS  product FUT9 (FUCOSYLTRANSFERASE 9); fucosyltransferase  note FUCOSYLTRANSFERASE 9 (FUT9); FUNCTIONS IN: fucosyltransferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: stem, cauline leaf; CONTAINS InterPro DOMAIN/s: Xyloglucan fucosyltransferase (InterPro:IPR004938); BEST Arabidopsis thaliana protein match is: FUT8 (FUCOSYLTRANSFERASE 8); galactoside 2-alpha-L-fucosyltransferase (TAIR:AT1G14100.1).  protein_id AT1G14110.1p  transcript_id AT1G14110.1  protein_id AT1G14110.1p  transcript_id AT1G14110.1  
At1g14120	chr1:004833648	0.0	C/4833648-4833920,4834019-4834340,4834490-4834833	AT1G14120.1 CDS  gene_syn F7A19.20, F7A19_20  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G14130.1); Has 4142 Blast hits to 4099 proteins in 511 species: Archae - 0; Bacteria - 408; Metazoa - 75; Fungi - 270; Plants - 2846; Viruses - 0; Other Eukaryotes - 543 (source: NCBI BLink).  protein_id AT1G14120.1p  transcript_id AT1G14120.1  protein_id AT1G14120.1p  transcript_id AT1G14120.1  
At1g14130	chr1:004836041	0.0	C/4836041-4836620,4836694-4837040	AT1G14130.1 CDS  gene_syn F7A19.21, F7A19_21  go_component nucleus|GO:0005634|14617066|IDA  go_function oxidoreductase activity|GO:0016491||IEA  go_process biological_process|GO:0008150||ND  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product 2-oxoglutarate-dependent dioxygenase, putative  note 2-oxoglutarate-dependent dioxygenase, putative; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G14120.1); Has 4610 Blast hits to 4563 proteins in 547 species: Archae - 0; Bacteria - 464; Metazoa - 97; Fungi - 366; Plants - 2925; Viruses - 0; Other Eukaryotes - 758 (source: NCBI BLink).  protein_id AT1G14130.1p  transcript_id AT1G14130.1  protein_id AT1G14130.1p  transcript_id AT1G14130.1  
At1g14140	chr1:004838131	0.0	C/4838131-4838661,4839216-4839602	AT1G14140.1 CDS  gene_syn F7A19.22, F7A19_22  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: ATUCP2 (UNCOUPLING PROTEIN 2); oxidative phosphorylation uncoupler (TAIR:AT5G58970.1); Has 20970 Blast hits to 10141 proteins in 366 species: Archae - 0; Bacteria - 0; Metazoa - 10383; Fungi - 5794; Plants - 2960; Viruses - 3; Other Eukaryotes - 1830 (source: NCBI BLink).  protein_id AT1G14140.1p  transcript_id AT1G14140.1  protein_id AT1G14140.1p  transcript_id AT1G14140.1  
At1g14150	chr1:004839885	0.0	W/4839885-4840358,4840534-4840632	AT1G14150.1 CDS  gene_syn F7A19.23, F7A19_23  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS  go_component chloroplast photosystem II|GO:0030095||ISS  product oxygen evolving enhancer 3 (PsbQ) family protein  note oxygen evolving enhancer 3 (PsbQ) family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: PSBQ-2; calcium ion binding (TAIR:AT4G05180.1); Has 97 Blast hits to 97 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14150.1p  transcript_id AT1G14150.1  protein_id AT1G14150.1p  transcript_id AT1G14150.1  
At1g14150	chr1:004839885	0.0	W/4839885-4840373	AT1G14150.2 CDS  gene_syn F7A19.23, F7A19_23  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process photosynthesis|GO:0015979||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|TAS  go_component chloroplast photosystem II|GO:0030095||ISS  product oxygen evolving enhancer 3 (PsbQ) family protein  note oxygen evolving enhancer 3 (PsbQ) family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: oxygen evolving enhancer 3 (PsbQ) family protein (TAIR:AT3G01440.1); Has 89 Blast hits to 89 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14150.2p  transcript_id AT1G14150.2  protein_id AT1G14150.2p  transcript_id AT1G14150.2  
At1g14160	chr1:004840798	0.0	C/4840798-4841013,4841168-4841291,4841371-4841660	AT1G14160.1 CDS  gene_syn F7A19.24, F7A19_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT5G15290.1); Has 244 Blast hits to 244 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 244; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14160.1p  transcript_id AT1G14160.1  protein_id AT1G14160.1p  transcript_id AT1G14160.1  
At1g14170	chr1:004843463	0.0	C/4843463-4843498,4843597-4843779,4843875-4844129,4844207-4844572,4844654-4845126,4845226-4845253	AT1G14170.2 CDS  gene_syn F7A19.25, F7A19_25  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G15270.2); Has 4481 Blast hits to 1939 proteins in 148 species: Archae - 0; Bacteria - 11; Metazoa - 3393; Fungi - 326; Plants - 598; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT1G14170.2p  transcript_id AT1G14170.2  protein_id AT1G14170.2p  transcript_id AT1G14170.2  
At1g14170	chr1:004843463	0.0	C/4843463-4843498,4843597-4843779,4843875-4844129,4844207-4844572,4844654-4845150,4845226-4845253	AT1G14170.1 CDS  gene_syn F7A19.25, F7A19_25  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G15270.2); Has 4576 Blast hits to 1933 proteins in 148 species: Archae - 0; Bacteria - 11; Metazoa - 3518; Fungi - 318; Plants - 563; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).  protein_id AT1G14170.1p  transcript_id AT1G14170.1  protein_id AT1G14170.1p  transcript_id AT1G14170.1  
At1g14170	chr1:004843463	0.0	C/4843463-4843498,4843597-4843779,4843875-4844129,4844207-4844572,4844654-4845253	AT1G14170.3 CDS  gene_syn F7A19.25, F7A19_25  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product KH domain-containing protein  note KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT5G15270.2); Has 4545 Blast hits to 1932 proteins in 148 species: Archae - 0; Bacteria - 11; Metazoa - 3518; Fungi - 325; Plants - 523; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).  protein_id AT1G14170.3p  transcript_id AT1G14170.3  protein_id AT1G14170.3p  transcript_id AT1G14170.3  
At1g14180	chr1:004847828	0.0	W/4847828-4848092,4848189-4848970	AT1G14180.1 CDS  gene_syn F7A19.26  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G18260.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14180.1p  transcript_id AT1G14180.1  protein_id AT1G14180.1p  transcript_id AT1G14180.1  
At1g14180	chr1:004847976	0.0	W/4847976-4848092,4848194-4848970	AT1G14180.2 CDS  gene_syn F7A19.26  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT5G18260.1); Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14180.2p  transcript_id AT1G14180.2  protein_id AT1G14180.2p  transcript_id AT1G14180.2  
At1g14182	chr1:004849448	0.0	C/4849448-4849826	AT1G14182.1 pseudogenic_transcript  pseudo  gene_syn SCR-Like 28, SCRL28  gene SCRL28  function Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).  
At1g14185	chr1:004850284	0.0	W/4850284-4850338,4850429-4851885	AT1G14185.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process cellular alcohol metabolic process|GO:0006066||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_function aldehyde-lyase activity|GO:0016832||ISS  product glucose-methanol-choline (GMC) oxidoreductase family protein  note glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cellular alcohol metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G14190.1); Has 9424 Blast hits to 8766 proteins in 685 species: Archae - 2; Bacteria - 2482; Metazoa - 860; Fungi - 1258; Plants - 139; Viruses - 9; Other Eukaryotes - 4674 (source: NCBI BLink).  protein_id AT1G14185.1p  transcript_id AT1G14185.1  protein_id AT1G14185.1p  transcript_id AT1G14185.1  
At1g14190	chr1:004852802	0.0	W/4852802-4854307	AT1G14190.1 CDS  gene_syn F7A19.28, F7A19_28  go_process cellular alcohol metabolic process|GO:0006066||IEA  go_function oxidoreductase activity, acting on CH-OH group of donors|GO:0016614||IEA  go_function FAD binding|GO:0050660||IEA  go_component cellular_component|GO:0005575||ND  go_function aldehyde-lyase activity|GO:0016832||ISS  product glucose-methanol-choline (GMC) oxidoreductase family protein  note glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: cellular alcohol metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G14185.1); Has 9397 Blast hits to 8716 proteins in 687 species: Archae - 2; Bacteria - 2428; Metazoa - 934; Fungi - 1263; Plants - 148; Viruses - 6; Other Eukaryotes - 4616 (source: NCBI BLink).  protein_id AT1G14190.1p  transcript_id AT1G14190.1  protein_id AT1G14190.1p  transcript_id AT1G14190.1  
At1g14200	chr1:004854532	0.0	C/4854532-4855071	AT1G14200.1 CDS  gene_syn F7A19.29, F7A19_29  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G26800.1); Has 6947 Blast hits to 6927 proteins in 223 species: Archae - 0; Bacteria - 6; Metazoa - 2376; Fungi - 551; Plants - 2760; Viruses - 56; Other Eukaryotes - 1198 (source: NCBI BLink).  protein_id AT1G14200.1p  transcript_id AT1G14200.1  protein_id AT1G14200.1p  transcript_id AT1G14200.1  
At1g14205	chr1:004855582	0.0	W/4855582-4855681,4855777-4855868,4855965-4856117,4856206-4856299,4856418-4856458,4856541-4856762	AT1G14205.1 CDS  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L18 family protein  note ribosomal protein L18 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: ribosomal protein L18 family protein (TAIR:AT1G48350.1); Has 1386 Blast hits to 1375 proteins in 460 species: Archae - 0; Bacteria - 933; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).  protein_id AT1G14205.1p  transcript_id AT1G14205.1  protein_id AT1G14205.1p  transcript_id AT1G14205.1  
At1g14210	chr1:004856902	0.0	C/4856902-4857182,4857261-4857465,4857600-4857755,4857840-4857941	AT1G14210.1 CDS  gene_syn F7A19.31, F7A19_31  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease T2 activity|GO:0033897||IEA  go_function endoribonuclease activity|GO:0004521||ISS  product ribonuclease T2 family protein  note ribonuclease T2 family protein; FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 1815 Blast hits to 1814 proteins in 306 species: Archae - 0; Bacteria - 139; Metazoa - 145; Fungi - 174; Plants - 1274; Viruses - 6; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G14210.1p  transcript_id AT1G14210.1  protein_id AT1G14210.1p  transcript_id AT1G14210.1  
At1g14220	chr1:004858642	0.0	C/4858642-4858865,4858955-4859153,4859233-4859388,4859494-4859601	AT1G14220.1 CDS  gene_syn F7A19.32, F7A19_32  go_component endomembrane system|GO:0012505||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease T2 activity|GO:0033897||IEA  go_function endoribonuclease activity|GO:0004521||ISS  product ribonuclease T2 family protein  note ribonuclease T2 family protein; FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: RNS3 (RIBONUCLEASE 3); RNA binding / endoribonuclease/ ribonuclease T2 (TAIR:AT1G26820.1); Has 2007 Blast hits to 2006 proteins in 379 species: Archae - 0; Bacteria - 274; Metazoa - 145; Fungi - 176; Plants - 1319; Viruses - 7; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G14220.1p  transcript_id AT1G14220.1  protein_id AT1G14220.1p  transcript_id AT1G14220.1  
At1g14225	chr1:004860515	0.0	C/4860515-4860649	AT1G14225.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G14225.1p  transcript_id AT1G14225.1  protein_id AT1G14225.1p  transcript_id AT1G14225.1  
At1g14230	chr1:004861497	0.0	W/4861497-4862103,4862343-4862455,4862588-4862695,4862924-4862966,4863070-4863261,4863347-4863444,4863545-4863741,4863838-4863991	AT1G14230.1 CDS  gene_syn 7A19.33, 7A19_33, F7A19.33, F7A19_33  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14250.1); Has 1089 Blast hits to 1083 proteins in 168 species: Archae - 0; Bacteria - 22; Metazoa - 528; Fungi - 214; Plants - 198; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).  protein_id AT1G14230.1p  transcript_id AT1G14230.1  protein_id AT1G14230.1p  transcript_id AT1G14230.1  
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.1 CDS  gene_syn F7A19.34, F7A19_34  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14250.1); Has 1092 Blast hits to 1087 proteins in 171 species: Archae - 0; Bacteria - 20; Metazoa - 528; Fungi - 214; Plants - 197; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G14240.1p  transcript_id AT1G14240.1  protein_id AT1G14240.1p  transcript_id AT1G14240.1  
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.2 CDS  gene_syn F7A19.34, F7A19_34  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14250.1); Has 1092 Blast hits to 1087 proteins in 171 species: Archae - 0; Bacteria - 20; Metazoa - 528; Fungi - 214; Plants - 197; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G14240.2p  transcript_id AT1G14240.2  protein_id AT1G14240.2p  transcript_id AT1G14240.2  
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865810-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.4 CDS  gene_syn F7A19.34, F7A19_34  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14250.1); Has 1092 Blast hits to 1087 proteins in 171 species: Archae - 0; Bacteria - 20; Metazoa - 528; Fungi - 214; Plants - 197; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).  protein_id AT1G14240.4p  transcript_id AT1G14240.4  protein_id AT1G14240.4p  transcript_id AT1G14240.4  
At1g14240	chr1:004865159	0.0	W/4865159-4865732,4865822-4865922,4866424-4866531,4866707-4866749,4866856-4867044,4867144-4867241,4867347-4867543,4867648-4867777	AT1G14240.3 CDS  gene_syn F7A19.34, F7A19_34  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14250.1); Has 1072 Blast hits to 1067 proteins in 163 species: Archae - 0; Bacteria - 20; Metazoa - 523; Fungi - 212; Plants - 197; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G14240.3p  transcript_id AT1G14240.3  protein_id AT1G14240.3p  transcript_id AT1G14240.3  
At1g14250	chr1:004868675	0.0	W/4868675-4869251,4869478-4869590,4869815-4869922,4870120-4870162,4870307-4870504,4870587-4870684,4870783-4870979,4871071-4871203	AT1G14250.1 CDS  go_component vacuole|GO:0005773|15539469|IDA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product nucleoside phosphatase family protein / GDA1/CD39 family protein  note nucleoside phosphatase family protein / GDA1/CD39 family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: nucleoside phosphatase family protein / GDA1/CD39 family protein (TAIR:AT1G14240.4); Has 1087 Blast hits to 1083 proteins in 168 species: Archae - 0; Bacteria - 20; Metazoa - 530; Fungi - 212; Plants - 197; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G14250.1p  transcript_id AT1G14250.1  protein_id AT1G14250.1p  transcript_id AT1G14250.1  
At1g14260	chr1:004873200	0.0	W/4873200-4873439,4873541-4873612,4873694-4873761,4873854-4874004,4874077-4874163,4874251-4874430	AT1G14260.1 CDS  gene_syn F14L17.2, F14L17_2  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G02960.4); Has 1265 Blast hits to 1265 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 81; Plants - 327; Viruses - 49; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G14260.1p  transcript_id AT1G14260.1  protein_id AT1G14260.1p  transcript_id AT1G14260.1  
At1g14260	chr1:004873200	0.0	W/4873200-4873439,4873541-4873612,4873694-4873761,4873854-4874004,4874077-4874163,4874251-4874430	AT1G14260.2 CDS  gene_syn F14L17.2, F14L17_2  go_function ubiquitin-protein ligase activity|GO:0004842|15644464|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G02960.4); Has 1265 Blast hits to 1265 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 81; Plants - 327; Viruses - 49; Other Eukaryotes - 201 (source: NCBI BLink).  protein_id AT1G14260.2p  transcript_id AT1G14260.2  protein_id AT1G14260.2p  transcript_id AT1G14260.2  
At1g14270	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876443	AT1G14270.3 CDS  gene_syn F14L17.3, F14L17_3  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 1950 Blast hits to 1950 proteins in 521 species: Archae - 48; Bacteria - 1564; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G14270.3p  transcript_id AT1G14270.3  protein_id AT1G14270.3p  transcript_id AT1G14270.3  
At1g14270	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876443	AT1G14270.4 CDS  gene_syn F14L17.3, F14L17_3  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 1950 Blast hits to 1950 proteins in 521 species: Archae - 48; Bacteria - 1564; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G14270.4p  transcript_id AT1G14270.4  protein_id AT1G14270.4p  transcript_id AT1G14270.4  
At1g14270	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876468,4876670-4876767,4876941-4877195	AT1G14270.1 CDS  gene_syn F14L17.3, F14L17_3  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 1959 Blast hits to 1957 proteins in 522 species: Archae - 48; Bacteria - 1570; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G14270.1p  transcript_id AT1G14270.1  protein_id AT1G14270.1p  transcript_id AT1G14270.1  
At1g14270	chr1:004875099	0.0	C/4875099-4875140,4875231-4875337,4875424-4875515,4875591-4875683,4875758-4875807,4875895-4876028,4876112-4876194,4876361-4876503	AT1G14270.2 CDS  gene_syn F14L17.3, F14L17_3  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||ISS  product CAAX amino terminal protease family protein  note CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 1953 Blast hits to 1953 proteins in 522 species: Archae - 48; Bacteria - 1566; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).  protein_id AT1G14270.2p  transcript_id AT1G14270.2  protein_id AT1G14270.2p  transcript_id AT1G14270.2  
At1g14280	chr1:004877657	0.0	W/4877657-4878985	AT1G14280.1 CDS  gene_syn F14L17.4, F14L17_4, PHYTOCHROME KINASE SUBSTRATE 2, PKS2  gene PKS2  function Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.  go_component chloroplast|GO:0009507||IEA  go_process phototropism|GO:0009638|16777956|IGI  go_function molecular_function|GO:0003674||ND  product PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)  note PHYTOCHROME KINASE SUBSTRATE 2 (PKS2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phototropism; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: PKS1 (PHYTOCHROME KINASE SUBSTRATE 1); protein binding (TAIR:AT2G02950.1); Has 111 Blast hits to 97 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 19; Fungi - 6; Plants - 54; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G14280.1p  transcript_id AT1G14280.1  protein_id AT1G14280.1p  transcript_id AT1G14280.1  
At1g14290	chr1:004880307	0.0	C/4880307-4880861,4881560-4881784	AT1G14290.1 CDS  gene_syn F14L17.5, F14L17_5, SBH2, SPHINGOID BASE HYDROXYLASE 2  gene SBH2  function Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_component Golgi apparatus|GO:0005794|18643979|IDA  go_process photomorphogenesis|GO:0009640|18612100|IMP  go_process sphingoid biosynthetic process|GO:0046520|18612100|IMP  go_function sphingosine hydroxylase activity|GO:0000170|11297741|IGI  go_function catalytic activity|GO:0003824||ISS  product SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase  note SPHINGOID BASE HYDROXYLASE 2 (SBH2); FUNCTIONS IN: sphingosine hydroxylase activity, catalytic activity; INVOLVED IN: sphingoid biosynthetic process, photomorphogenesis; LOCATED IN: endoplasmic reticulum, Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase (TAIR:AT1G69640.1); Has 1741 Blast hits to 1713 proteins in 276 species: Archae - 0; Bacteria - 270; Metazoa - 376; Fungi - 453; Plants - 225; Viruses - 2; Other Eukaryotes - 415 (source: NCBI BLink).  protein_id AT1G14290.1p  transcript_id AT1G14290.1  protein_id AT1G14290.1p  transcript_id AT1G14290.1  
At1g14300	chr1:004882654	0.0	C/4882654-4882713,4882817-4882930,4883045-4883176,4883277-4883390,4883492-4883637,4883930-4884008,4884112-4884309,4884399-4884521,4884633-4884686	AT1G14300.1 CDS  gene_syn F14L17.6, F14L17_6  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0507 (InterPro:IPR007205), Armadillo-like helical (InterPro:IPR011989), Uncharacterised protein family UPF0507, C-terminal (InterPro:IPR007206), Armadillo-type fold (InterPro:IPR016024); Has 231 Blast hits to 231 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 94; Plants - 27; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G14300.1p  transcript_id AT1G14300.1  protein_id AT1G14300.1p  transcript_id AT1G14300.1  
At1g14310	chr1:004885049	0.0	W/4885049-4885151,4885329-4885439,4885523-4885605,4885705-4885788,4885879-4885954,4886041-4886113,4886211-4886284,4886408-4886501,4886606-4886672	AT1G14310.1 CDS  gene_syn F14L17.7, F14L17_7  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function phosphoglycolate phosphatase activity|GO:0008967||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT2G41250.1); Has 3123 Blast hits to 3123 proteins in 777 species: Archae - 164; Bacteria - 1829; Metazoa - 172; Fungi - 51; Plants - 56; Viruses - 0; Other Eukaryotes - 851 (source: NCBI BLink).  protein_id AT1G14310.1p  transcript_id AT1G14310.1  protein_id AT1G14310.1p  transcript_id AT1G14310.1  
At1g14315	chr1:004886861	0.0	C/4886861-4887377,4887539-4887933	AT1G14315.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT1G14430.1).  protein_id AT1G14315.2p  transcript_id AT1G14315.2  protein_id AT1G14315.2p  transcript_id AT1G14315.2  
At1g14315	chr1:004886861	0.0	C/4886861-4887439	AT1G14315.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G09650.1); Has 104 Blast hits to 101 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G14315.1p  transcript_id AT1G14315.1  protein_id AT1G14315.1p  transcript_id AT1G14315.1  
At1g14320	chr1:004888270	0.0	W/4888270-4888279,4888549-4888766,4888938-4889050,4889146-4889227,4889340-4889408	AT1G14320.2 CDS  gene_syn F14L17.9, F14L17_9, SAC52, SUPPRESSOR OF ACAULIS 52  gene SAC52  function Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.  go_component plasma membrane|GO:0005886|17151019|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome  note SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L10 (RPL10B) (TAIR:AT1G26910.1); Has 1427 Blast hits to 1248 proteins in 446 species: Archae - 212; Bacteria - 0; Metazoa - 527; Fungi - 145; Plants - 112; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).  protein_id AT1G14320.2p  transcript_id AT1G14320.2  protein_id AT1G14320.2p  transcript_id AT1G14320.2  
At1g14320	chr1:004888270	0.0	W/4888270-4888279,4888549-4889050,4889146-4889227,4889340-4889408	AT1G14320.1 CDS  gene_syn F14L17.9, F14L17_9, SAC52, SUPPRESSOR OF ACAULIS 52  gene SAC52  function Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.  go_component nucleolus|GO:0005730|15496452|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412|18694459|TAS  go_function structural constituent of ribosome|GO:0003735||IEA  go_component large ribosomal subunit|GO:0015934||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome  note SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L10 (RPL10B) (TAIR:AT1G26910.1); Has 1313 Blast hits to 1311 proteins in 457 species: Archae - 225; Bacteria - 9; Metazoa - 446; Fungi - 102; Plants - 110; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT1G14320.1p  transcript_id AT1G14320.1  protein_id AT1G14320.1p  transcript_id AT1G14320.1  
At1g14330	chr1:004890375	0.0	C/4890375-4891700	AT1G14330.1 CDS  gene_syn F14L17.10, F14L17_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G02870.3); Has 6361 Blast hits to 3445 proteins in 198 species: Archae - 6; Bacteria - 233; Metazoa - 5087; Fungi - 15; Plants - 597; Viruses - 137; Other Eukaryotes - 286 (source: NCBI BLink).  protein_id AT1G14330.1p  transcript_id AT1G14330.1  protein_id AT1G14330.1p  transcript_id AT1G14330.1  
At1g14340	chr1:004897709	0.0	W/4897709-4897827,4897919-4897994,4898080-4898193,4898351-4898776	AT1G14340.1 CDS  gene_syn F14L17.11, F14L17_11  go_process oxidation reduction|GO:0055114||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function nucleic acid binding|GO:0003676||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleic acid binding / oxidoreductase (TAIR:AT3G01210.1); Has 201 Blast hits to 201 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 59; Plants - 135; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G14340.1p  transcript_id AT1G14340.1  protein_id AT1G14340.1p  transcript_id AT1G14340.1  
At1g14345	chr1:004899176	0.0	W/4899176-4899766	AT1G14345.1 CDS  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process oxidation reduction|GO:0055114||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product oxidoreductase  note oxidoreductase; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); Has 255 Blast hits to 255 proteins in 67 species: Archae - 0; Bacteria - 103; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G14345.1p  transcript_id AT1G14345.1  protein_id AT1G14345.1p  transcript_id AT1G14345.1  
At1g14350	chr1:004908427	0.0	W/4908427-4908519,4908607-4908653,4908820-4908876,4908978-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.1 CDS  gene_syn AtMYB124, F14L17.12, F14L17_12, FLP, FOUR LIPS, MYB124, myb domain protein 124  gene FLP  function Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88.  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process guard cell differentiation|GO:0010052|16155180|IGI  go_process guard cell differentiation|GO:0010052||NAS  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product FLP (FOUR LIPS); DNA binding / transcription factor  note FOUR LIPS (FLP); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, guard cell differentiation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB88 (myb domain protein 88); DNA binding / transcription factor (TAIR:AT2G02820.2); Has 5963 Blast hits to 5288 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 730; Fungi - 322; Plants - 3160; Viruses - 6; Other Eukaryotes - 1745 (source: NCBI BLink).  protein_id AT1G14350.1p  transcript_id AT1G14350.1  protein_id AT1G14350.1p  transcript_id AT1G14350.1  
At1g14350	chr1:004908427	0.0	W/4908427-4908519,4908607-4908653,4908820-4908876,4908978-4909050,4909157-4909212,4909309-4909476,4909572-4909866,4909962-4910104,4910184-4910451,4910537-4910647	AT1G14350.2 CDS  gene_syn AtMYB124, F14L17.12, F14L17_12, FLP, FOUR LIPS, MYB124, myb domain protein 124  gene FLP  function Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88.  go_process regulation of transcription, DNA-dependent|GO:0006355|11597504|ISS  go_process guard cell differentiation|GO:0010052|16155180|IGI  go_process guard cell differentiation|GO:0010052||NAS  go_function DNA binding|GO:0003677|11597504|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product FLP (FOUR LIPS); DNA binding / transcription factor  note FOUR LIPS (FLP); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, guard cell differentiation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB88 (myb domain protein 88); DNA binding / transcription factor (TAIR:AT2G02820.2); Has 5963 Blast hits to 5288 proteins in 354 species: Archae - 0; Bacteria - 0; Metazoa - 730; Fungi - 322; Plants - 3160; Viruses - 6; Other Eukaryotes - 1745 (source: NCBI BLink).  protein_id AT1G14350.2p  transcript_id AT1G14350.2  protein_id AT1G14350.2p  transcript_id AT1G14350.2  
At1g14360	chr1:004911362	0.0	C/4911362-4911767,4911865-4911986,4912079-4912182,4912268-4912298,4912413-4912543,4912639-4912736,4912926-4913029	AT1G14360.1 CDS  gene_syn ATUTR3, F14L17.13, F14L17_13, UDP-GALACTOSE TRANSPORTER 3, UTR3  gene UTR3  go_component endomembrane system|GO:0012505||IEA  go_function pyrimidine nucleotide sugar transmembrane transporter activity|GO:0015165||ISS  product UTR3 (UDP-GALACTOSE TRANSPORTER 3); pyrimidine nucleotide sugar transmembrane transporter  note UDP-GALACTOSE TRANSPORTER 3 (UTR3); FUNCTIONS IN: pyrimidine nucleotide sugar transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UTR1 (UDP-GALACTOSE TRANSPORTER 1); UDP-galactose transmembrane transporter/ UDP-glucose transmembrane transporter/ pyrimidine nucleotide sugar transmembrane transporter (TAIR:AT2G02810.1); Has 750 Blast hits to 744 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 423; Fungi - 103; Plants - 108; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G14360.1p  transcript_id AT1G14360.1  protein_id AT1G14360.1p  transcript_id AT1G14360.1  
At1g14370	chr1:004915859	0.0	W/4915859-4915925,4916195-4916541,4916636-4916771,4916873-4917009,4917096-4917219,4917490-4917959	AT1G14370.1 CDS  gene_syn APK2A, F14L17.14, F14L17_14, PROTEIN KINASE 2A  gene APK2A  function Encodes protein kinase APK2a.  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product APK2A (PROTEIN KINASE 2A); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note PROTEIN KINASE 2A (APK2A); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: APK2B (PROTEIN KINASE 2B); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G02800.2); Has 81001 Blast hits to 79861 proteins in 2584 species: Archae - 40; Bacteria - 7280; Metazoa - 35631; Fungi - 6176; Plants - 18440; Viruses - 319; Other Eukaryotes - 13115 (source: NCBI BLink).  protein_id AT1G14370.1p  transcript_id AT1G14370.1  protein_id AT1G14370.1p  transcript_id AT1G14370.1  
At1g14380	chr1:004918279	0.0	C/4918279-4918310,4918407-4919037,4919224-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.2 CDS  gene_syn F14L17.15, F14L17_15, IQ67 DOMAIN PROTEIN 28, IQD28  gene IQD28  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD28 (IQ67 DOMAIN PROTEIN 28); calmodulin binding  note IQ67 DOMAIN PROTEIN 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD29 (IQ-domain 29); calmodulin binding (TAIR:AT2G02790.1); Has 3910 Blast hits to 3034 proteins in 270 species: Archae - 2; Bacteria - 174; Metazoa - 1744; Fungi - 313; Plants - 510; Viruses - 14; Other Eukaryotes - 1153 (source: NCBI BLink).  protein_id AT1G14380.2p  transcript_id AT1G14380.2  protein_id AT1G14380.2p  transcript_id AT1G14380.2  
At1g14380	chr1:004918279	0.0	C/4918279-4918310,4918407-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.1 CDS  gene_syn F14L17.15, F14L17_15, IQ67 DOMAIN PROTEIN 28, IQD28  gene IQD28  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD28 (IQ67 DOMAIN PROTEIN 28); calmodulin binding  note IQ67 DOMAIN PROTEIN 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD29 (IQ-domain 29); calmodulin binding (TAIR:AT2G02790.1); Has 5726 Blast hits to 4293 proteins in 313 species: Archae - 0; Bacteria - 281; Metazoa - 2433; Fungi - 436; Plants - 559; Viruses - 34; Other Eukaryotes - 1983 (source: NCBI BLink).  protein_id AT1G14380.1p  transcript_id AT1G14380.1  protein_id AT1G14380.1p  transcript_id AT1G14380.1  
At1g14380	chr1:004918279	0.0	C/4918279-4918310,4918407-4919775,4919915-4919995,4920085-4920273,4920359-4920592,4920672-4920761	AT1G14380.3 CDS  gene_syn F14L17.15, F14L17_15, IQ67 DOMAIN PROTEIN 28, IQD28  gene IQD28  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD28 (IQ67 DOMAIN PROTEIN 28); calmodulin binding  note IQ67 DOMAIN PROTEIN 28 (IQD28); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD29 (IQ-domain 29); calmodulin binding (TAIR:AT2G02790.1); Has 5726 Blast hits to 4293 proteins in 313 species: Archae - 0; Bacteria - 281; Metazoa - 2433; Fungi - 436; Plants - 559; Viruses - 34; Other Eukaryotes - 1983 (source: NCBI BLink).  protein_id AT1G14380.3p  transcript_id AT1G14380.3  protein_id AT1G14380.3p  transcript_id AT1G14380.3  
At1g14390	chr1:004924277	0.0	W/4924277-4925522,4925599-4925720,4925800-4926046,4926127-4926320,4926360-4926794	AT1G14390.1 CDS  gene_syn F14L17.16, F14L17_16  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G02780.1); Has 60751 Blast hits to 33447 proteins in 1087 species: Archae - 20; Bacteria - 3500; Metazoa - 15937; Fungi - 887; Plants - 36384; Viruses - 79; Other Eukaryotes - 3944 (source: NCBI BLink).  protein_id AT1G14390.1p  transcript_id AT1G14390.1  protein_id AT1G14390.1p  transcript_id AT1G14390.1  
At1g14400	chr1:004927294	0.0	C/4927294-4927422,4927518-4927606,4927704-4927793,4927890-4927915,4928012-4928136	AT1G14400.1 CDS  gene_syn ATUBC1, F14L17.17, F14L17_17, UBC1, UBIQUITIN CARRIER PROTEIN 1, UBIQUITIN CONJUGATING ENZYME 1  gene UBC1  function ubiquitin carrier protein  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process negative regulation of flower development|GO:0009910|18798874|IGI  go_process leaf morphogenesis|GO:0009965|18798874|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18849490|IGI  go_process histone H2B ubiquitination|GO:0033523|18849490|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase  note UBIQUITIN CARRIER PROTEIN 1 (UBC1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: negative regulation of flower development, histone H2B ubiquitination, vegetative to reproductive phase transition, leaf morphogenesis, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase (TAIR:AT2G02760.1); Has 7803 Blast hits to 7771 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3700; Fungi - 1521; Plants - 1189; Viruses - 22; Other Eukaryotes - 1371 (source: NCBI BLink).  protein_id AT1G14400.1p  transcript_id AT1G14400.1  protein_id AT1G14400.1p  transcript_id AT1G14400.1  
At1g14400	chr1:004927294	0.0	C/4927294-4927422,4927518-4927606,4927704-4927793,4927890-4927915,4928012-4928136	AT1G14400.2 CDS  gene_syn ATUBC1, F14L17.17, F14L17_17, UBC1, UBIQUITIN CARRIER PROTEIN 1, UBIQUITIN CONJUGATING ENZYME 1  gene UBC1  function ubiquitin carrier protein  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_process negative regulation of flower development|GO:0009910|18798874|IGI  go_process leaf morphogenesis|GO:0009965|18798874|IGI  go_process vegetative to reproductive phase transition|GO:0010228|18849490|IGI  go_process histone H2B ubiquitination|GO:0033523|18849490|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase  note UBIQUITIN CARRIER PROTEIN 1 (UBC1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: negative regulation of flower development, histone H2B ubiquitination, vegetative to reproductive phase transition, leaf morphogenesis, ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase (TAIR:AT2G02760.1); Has 7803 Blast hits to 7771 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 3700; Fungi - 1521; Plants - 1189; Viruses - 22; Other Eukaryotes - 1371 (source: NCBI BLink).  protein_id AT1G14400.2p  transcript_id AT1G14400.2  protein_id AT1G14400.2p  transcript_id AT1G14400.2  
At1g14410	chr1:004929352	0.0	C/4929352-4929471,4929563-4929651,4929725-4929798,4929878-4929972,4930106-4930198,4930291-4930391,4930591-4930810	AT1G14410.1 CDS  gene_syn A. THALIANA WHIRLY 1, ATWHY1, F14L17.18, F14L17_18, PTAC1, WHIRLY 1, WHY1  gene WHY1  function Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|15967440|IDA  go_component telomerase holoenzyme complex|GO:0005697|17217467|IDA  go_component chloroplast|GO:0009507|15967440|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process defense response|GO:0006952|15708347|TAS  go_process negative regulation of telomere maintenance via telomerase|GO:0032211|17217467|IMP  go_function DNA binding|GO:0003677|15967440|ISS  go_function telomeric DNA binding|GO:0042162|17217467|IDA  product WHY1 (WHIRLY 1); DNA binding / telomeric DNA binding  note WHIRLY 1 (WHY1); FUNCTIONS IN: DNA binding, telomeric DNA binding; INVOLVED IN: negative regulation of telomere maintenance via telomerase, defense response; LOCATED IN: plastid chromosome, nucleus, chloroplast, nucleoid, telomerase holoenzyme complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: WHY3 (WHIRLY 3); DNA binding (TAIR:AT2G02740.2); Has 56 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G14410.1p  transcript_id AT1G14410.1  protein_id AT1G14410.1p  transcript_id AT1G14410.1  
At1g14420	chr1:004931844	0.0	C/4931844-4932326,4932424-4933111,4933197-4933405	AT1G14420.1 CDS  gene_syn AT59, F14L17.19, F14L17_19  gene AT59  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664|9278171|TAS  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570|9278171|ISS  go_function pectate lyase activity|GO:0030570||ISS  product AT59; lyase/ pectate lyase  note AT59; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase, N-terminal (InterPro:IPR007524), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT2G02720.1); Has 935 Blast hits to 930 proteins in 165 species: Archae - 0; Bacteria - 369; Metazoa - 0; Fungi - 157; Plants - 399; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G14420.1p  transcript_id AT1G14420.1  protein_id AT1G14420.1p  transcript_id AT1G14420.1  
At1g14430	chr1:004934359	0.0	W/4934359-4936041,4936155-4937021	AT1G14430.1 CDS  gene_syn F14L17.20, F14L17_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glyoxal oxidase-related  note glyoxal oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Immunoglobulin E-set (InterPro:IPR014756), Region of unknown function DUF1929 (InterPro:IPR015202), F-box associated type 1 (InterPro:IPR017451), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin-like fold (InterPro:IPR013783), F-box associated (InterPro:IPR006527), Glyoxal oxidase, N-terminal (InterPro:IPR009880); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT3G57620.1); Has 756 Blast hits to 750 proteins in 127 species: Archae - 0; Bacteria - 232; Metazoa - 2; Fungi - 169; Plants - 341; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G14430.1p  transcript_id AT1G14430.1  protein_id AT1G14430.1p  transcript_id AT1G14430.1  
At1g14440	chr1:004939076	0.0	C/4939076-4940014	AT1G14440.1 CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31, AtHB31, F14L17.21, F14L17_21  gene AtHB31  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700||ISS  product AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31 (AtHB31); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21); DNA binding / transcription activator/ transcription factor (TAIR:AT2G02540.1); Has 364 Blast hits to 339 proteins in 60 species: Archae - 0; Bacteria - 10; Metazoa - 45; Fungi - 3; Plants - 269; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G14440.1p  transcript_id AT1G14440.1  protein_id AT1G14440.1p  transcript_id AT1G14440.1  
At1g14440	chr1:004939076	0.0	C/4939076-4940014	AT1G14440.2 CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31, AtHB31, F14L17.21, F14L17_21  gene AtHB31  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700||ISS  product AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31 (AtHB31); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21); DNA binding / transcription activator/ transcription factor (TAIR:AT2G02540.1); Has 364 Blast hits to 339 proteins in 60 species: Archae - 0; Bacteria - 10; Metazoa - 45; Fungi - 3; Plants - 269; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G14440.2p  transcript_id AT1G14440.2  protein_id AT1G14440.2p  transcript_id AT1G14440.2  
At1g14450	chr1:004947337	0.0	C/4947337-4947558	AT1G14450.1 CDS  gene_syn F14L17.22, F14L17_22  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02510.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14450.1p  transcript_id AT1G14450.1  protein_id AT1G14450.1p  transcript_id AT1G14450.1  
At1g14455	chr1:004947985	0.0	C/4947985-4948278	AT1G14455.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 49 Blast hits to 29 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G14455.1p  transcript_id AT1G14455.1  protein_id AT1G14455.1p  transcript_id AT1G14455.1  
At1g14460	chr1:004948962	0.0	C/4948962-4949045,4949138-4949219,4949302-4949776,4949855-4950364,4950455-4950674,4950771-4952750	AT1G14460.1 CDS  gene_syn F14L17.24, F14L17_24  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process DNA replication|GO:0006260||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed DNA polymerase activity|GO:0003887||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  product DNA polymerase-related  note DNA polymerase-related; FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunits gamma and tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA polymerase (TAIR:AT2G02480.1); Has 10712 Blast hits to 10690 proteins in 1552 species: Archae - 331; Bacteria - 5096; Metazoa - 350; Fungi - 341; Plants - 152; Viruses - 39; Other Eukaryotes - 4403 (source: NCBI BLink).  protein_id AT1G14460.1p  transcript_id AT1G14460.1  protein_id AT1G14460.1p  transcript_id AT1G14460.1  
At1g14470	chr1:004954080	0.0	W/4954080-4955702	AT1G14470.1 CDS  gene_syn F14L17.25, F14L17_25  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G08070.1); Has 16693 Blast hits to 5303 proteins in 152 species: Archae - 1; Bacteria - 16; Metazoa - 270; Fungi - 137; Plants - 15799; Viruses - 0; Other Eukaryotes - 470 (source: NCBI BLink).  protein_id AT1G14470.1p  transcript_id AT1G14470.1  protein_id AT1G14470.1p  transcript_id AT1G14470.1  
At1g14480	chr1:004956404	0.0	W/4956404-4957000,4957160-4957888	AT1G14480.1 CDS  gene_syn F14L17.26, F14L17_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT1G14500.1); Has 7259 Blast hits to 4035 proteins in 203 species: Archae - 6; Bacteria - 372; Metazoa - 3887; Fungi - 139; Plants - 677; Viruses - 29; Other Eukaryotes - 2149 (source: NCBI BLink).  protein_id AT1G14480.1p  transcript_id AT1G14480.1  protein_id AT1G14480.1p  transcript_id AT1G14480.1  
At1g14490	chr1:004958705	0.0	C/4958705-4959325	AT1G14490.1 CDS  gene_syn F14L17.27, F14L17_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT5G49700.1); Has 415 Blast hits to 414 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 415; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14490.1p  transcript_id AT1G14490.1  protein_id AT1G14490.1p  transcript_id AT1G14490.1  
At1g14500	chr1:004960375	0.0	W/4960375-4960971,4961067-4961780	AT1G14500.1 CDS  gene_syn F14L17.28, F14L17_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515||ISS  product ankyrin repeat family protein  note ankyrin repeat family protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT1G14480.1); Has 8120 Blast hits to 4283 proteins in 225 species: Archae - 8; Bacteria - 498; Metazoa - 4962; Fungi - 256; Plants - 734; Viruses - 27; Other Eukaryotes - 1635 (source: NCBI BLink).  protein_id AT1G14500.1p  transcript_id AT1G14500.1  protein_id AT1G14500.1p  transcript_id AT1G14500.1  
At1g14510	chr1:004962171	0.0	C/4962171-4962443,4962539-4962665,4963066-4963294,4963810-4963842,4964058-4964154	AT1G14510.1 CDS  gene_syn AL7, ALFIN-LIKE 7, F14L17.29, F14L17_29  gene AL7  function AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.  go_component nucleus|GO:0005634|19154204|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function methylated histone residue binding|GO:0035064|19154204|IDA  product AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding  note ALFIN-LIKE 7 (AL7); FUNCTIONS IN: methylated histone residue binding, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding (TAIR:AT2G02470.1); Has 1349 Blast hits to 1308 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 734; Fungi - 217; Plants - 345; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G14510.1p  transcript_id AT1G14510.1  protein_id AT1G14510.1p  transcript_id AT1G14510.1  
At1g14518	chr1:004966810	0.0	C/4966810-4967493	AT1G14518.1 ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G14518.1  
At1g14520	chr1:004968376	0.0	C/4968376-4968402,4968501-4968661,4968761-4968830,4968917-4969039,4969130-4969242,4969331-4969617,4969691-4969802,4969918-4969954	AT1G14520.2 CDS  gene_syn F14L17.30, F14L17_30, MIOX1, MYO-INISITOL OXYGENASE  gene MIOX1  function Encodes MIOX1. Belongs to myo-inositol oxygenase gene family.  go_component cytoplasm|GO:0005737||IEA  go_process inositol catabolic process|GO:0019310||IEA  go_function oxidoreductase activity|GO:0016491||ISS  go_function inositol oxygenase activity|GO:0050113|15660207|IMP  product MIOX1 (MYO-INISITOL OXYGENASE); inositol oxygenase/ oxidoreductase  note MYO-INISITOL OXYGENASE (MIOX1); FUNCTIONS IN: inositol oxygenase activity, oxidoreductase activity; INVOLVED IN: inositol catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828); BEST Arabidopsis thaliana protein match is: MIOX2 (MYO-INOSITOL OXYGENASE 2); inositol oxygenase (TAIR:AT2G19800.1).  protein_id AT1G14520.2p  transcript_id AT1G14520.2  protein_id AT1G14520.2p  transcript_id AT1G14520.2  
At1g14520	chr1:004968376	0.0	C/4968376-4968402,4968501-4968661,4968761-4968830,4968917-4969039,4969130-4969242,4969331-4969617,4969691-4969808,4969918-4969954	AT1G14520.1 CDS  gene_syn F14L17.30, F14L17_30, MIOX1, MYO-INISITOL OXYGENASE  gene MIOX1  function Encodes MIOX1. Belongs to myo-inositol oxygenase gene family.  go_component cytoplasm|GO:0005737||IEA  go_process inositol catabolic process|GO:0019310||IEA  go_function oxidoreductase activity|GO:0016491||ISS  go_function inositol oxygenase activity|GO:0050113|15660207|IMP  product MIOX1 (MYO-INISITOL OXYGENASE); inositol oxygenase/ oxidoreductase  note MYO-INISITOL OXYGENASE (MIOX1); FUNCTIONS IN: inositol oxygenase activity, oxidoreductase activity; INVOLVED IN: inositol catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: stem, fruit, flower, root, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF706 (InterPro:IPR007828); BEST Arabidopsis thaliana protein match is: MIOX2 (MYO-INOSITOL OXYGENASE 2); inositol oxygenase (TAIR:AT2G19800.1); Has 347 Blast hits to 347 proteins in 106 species: Archae - 0; Bacteria - 12; Metazoa - 116; Fungi - 78; Plants - 54; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).  protein_id AT1G14520.1p  transcript_id AT1G14520.1  protein_id AT1G14520.1p  transcript_id AT1G14520.1  
At1g14530	chr1:004971420	0.0	C/4971420-4971512,4971648-4971725,4971854-4971907,4971998-4972061,4972323-4972368,4972456-4972528,4972702-4972773,4972849-4972941,4973034-4973086,4973166-4973256,4973433-4973597	AT1G14530.1 CDS  gene_syn F14L17.31, F14L17_31, THH1, TOM THREE HOMOLOG 1  gene THH1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function virion binding|GO:0046790|11836427|IPI  product THH1 (TOM THREE HOMOLOG 1); virion binding  note TOM THREE HOMOLOG 1 (THH1); FUNCTIONS IN: virion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: TOM3; protein binding (TAIR:AT2G02180.1); Has 158 Blast hits to 158 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G14530.1p  transcript_id AT1G14530.1  protein_id AT1G14530.1p  transcript_id AT1G14530.1  
At1g14530	chr1:004971420	0.0	C/4971420-4971512,4971648-4971725,4971854-4971907,4971998-4972061,4972323-4972368,4972456-4972528,4972702-4972773,4972849-4972941,4973034-4973086,4973166-4973256,4973433-4973597	AT1G14530.2 CDS  gene_syn F14L17.31, F14L17_31, THH1, TOM THREE HOMOLOG 1  gene THH1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function virion binding|GO:0046790|11836427|IPI  product THH1 (TOM THREE HOMOLOG 1); virion binding  note TOM THREE HOMOLOG 1 (THH1); FUNCTIONS IN: virion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: TOM3; protein binding (TAIR:AT2G02180.1); Has 158 Blast hits to 158 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G14530.2p  transcript_id AT1G14530.2  protein_id AT1G14530.2p  transcript_id AT1G14530.2  
At1g14540	chr1:004974233	0.0	C/4974233-4974624,4974712-4974877,4975099-4975290,4975403-4975600	AT1G14540.1 CDS  gene_syn F14L17.32, F14L17_32  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product anionic peroxidase, putative  note anionic peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: anionic peroxidase, putative (TAIR:AT1G14550.1); Has 2965 Blast hits to 2948 proteins in 232 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 121; Plants - 2791; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G14540.1p  transcript_id AT1G14540.1  protein_id AT1G14540.1p  transcript_id AT1G14540.1  
At1g14549	chr1:004978794	0.0	C/4978794-4978907	AT1G14549.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G14549.1p  transcript_id AT1G14549.1  protein_id AT1G14549.1p  transcript_id AT1G14549.1  
At1g14550	chr1:004979028	0.0	W/4979028-4979240,4979326-4979517,4979607-4979775,4979933-4980324	AT1G14550.1 CDS  gene_syn F14L17.33, F14L17_33  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product anionic peroxidase, putative  note anionic peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: anionic peroxidase, putative (TAIR:AT1G14540.1); Has 3100 Blast hits to 3086 proteins in 229 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 255; Plants - 2791; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G14550.1p  transcript_id AT1G14550.1  protein_id AT1G14550.1p  transcript_id AT1G14550.1  
At1g14560	chr1:004981300	0.0	W/4981300-4981455,4981615-4981700,4981785-4981992,4982105-4982237,4982492-4982676,4982764-4982898,4982990-4983082	AT1G14560.1 CDS  gene_syn T5E21.6, T5E21_6  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function transporter activity|GO:0005215||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: endomembrane system, mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Graves disease carrier protein (InterPro:IPR002167); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT4G26180.1); Has 18676 Blast hits to 9940 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 9411; Fungi - 4887; Plants - 2588; Viruses - 0; Other Eukaryotes - 1790 (source: NCBI BLink).  protein_id AT1G14560.1p  transcript_id AT1G14560.1  protein_id AT1G14560.1p  transcript_id AT1G14560.1  
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985428-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.1 CDS  gene_syn T5E21.7, T5E21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 420 Blast hits to 408 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 186; Fungi - 87; Plants - 89; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G14570.1p  transcript_id AT1G14570.1  protein_id AT1G14570.1p  transcript_id AT1G14570.1  
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985428-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.2 CDS  gene_syn T5E21.7, T5E21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 420 Blast hits to 408 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 186; Fungi - 87; Plants - 89; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G14570.2p  transcript_id AT1G14570.2  protein_id AT1G14570.2p  transcript_id AT1G14570.2  
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985491-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.3 CDS  gene_syn T5E21.7, T5E21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 427 Blast hits to 418 proteins in 130 species: Archae - 0; Bacteria - 2; Metazoa - 188; Fungi - 89; Plants - 86; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G14570.3p  transcript_id AT1G14570.3  protein_id AT1G14570.3p  transcript_id AT1G14570.3  
At1g14570	chr1:004983770	0.0	W/4983770-4983871,4984426-4984550,4984636-4984746,4985491-4985656,4985738-4985815,4986173-4986241,4986335-4986584,4986664-4986938,4987025-4987192	AT1G14570.4 CDS  gene_syn T5E21.7, T5E21_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product UBX domain-containing protein  note UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 427 Blast hits to 418 proteins in 130 species: Archae - 0; Bacteria - 2; Metazoa - 188; Fungi - 89; Plants - 86; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G14570.4p  transcript_id AT1G14570.4  protein_id AT1G14570.4p  transcript_id AT1G14570.4  
At1g14580	chr1:004990070	0.0	W/4990070-4990256,4990484-4990880,4991623-4992442	AT1G14580.1 CDS  gene_syn T5E21.8, T5E21_8  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4); transcription factor (TAIR:AT2G02080.1); Has 42992 Blast hits to 16360 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 41215; Fungi - 185; Plants - 386; Viruses - 0; Other Eukaryotes - 1203 (source: NCBI BLink).  protein_id AT1G14580.1p  transcript_id AT1G14580.1  protein_id AT1G14580.1p  transcript_id AT1G14580.1  
At1g14590	chr1:004998957	0.0	C/4998957-4999035,4999125-4999606,4999711-5000076,5000384-5000617	AT1G14590.1 CDS  gene_syn T5E21.9, T5E21_9  go_component chloroplast thylakoid lumen|GO:0009543|11719511|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02061.1); Has 179 Blast hits to 175 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G14590.1p  transcript_id AT1G14590.1  protein_id AT1G14590.1p  transcript_id AT1G14590.1  
At1g14600	chr1:005001185	0.0	C/5001185-5001442,5001998-5002121,5002287-5002413,5002790-5002829,5002980-5003056,5003229-5003370	AT1G14600.1 CDS  gene_syn T5E21.10, T5E21_10  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product DNA binding / transcription factor  note DNA binding / transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT2G02060.1); Has 871 Blast hits to 869 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 866; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G14600.1p  transcript_id AT1G14600.1  protein_id AT1G14600.1p  transcript_id AT1G14600.1  
At1g14610	chr1:005008502	0.0	C/5008502-5008676,5008779-5008927,5009012-5009111,5009236-5009342,5009427-5009927,5010012-5010263,5010371-5010773,5010917-5011116,5011251-5011421,5011512-5011814,5011889-5011946,5012108-5012187,5012352-5012435,5012523-5012600,5012732-5012815,5012896-5012961,5013134-5013206,5013288-5013466,5013593-5013655,5014167-5014232,5014352-5014486	AT1G14610.1 CDS  gene_syn T5E21.11, T5E21_11, TWIN 2, TWN2, VALRS, VALYL TRNA SYNTHETASE  gene TWN2  function Required for proper proliferation of basal cells.  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function valine-tRNA ligase activity|GO:0004832||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_component chloroplast|GO:0009507|16251277|IDA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_process embryonic development ending in seed dormancy|GO:0009793|16297076|IMP  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product TWN2 (TWIN 2); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / valine-tRNA ligase  note TWIN 2 (TWN2); FUNCTIONS IN: valine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: EMB2247 (embryo defective 2247); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / valine-tRNA ligase (TAIR:AT5G16715.1); Has 29124 Blast hits to 27207 proteins in 1830 species: Archae - 553; Bacteria - 10301; Metazoa - 1757; Fungi - 663; Plants - 197; Viruses - 2; Other Eukaryotes - 15651 (source: NCBI BLink).  protein_id AT1G14610.1p  transcript_id AT1G14610.1  protein_id AT1G14610.1p  transcript_id AT1G14610.1  
At1g14620	chr1:005014948	0.0	C/5014948-5015091,5015177-5015302,5015397-5015526,5015622-5015696,5016046-5016111,5016341-5016501	AT1G14620.1 CDS  gene_syn DECOY, T5E21.12, T5E21_12  gene DECOY  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DECOY (DECOY)  note DECOY (DECOY); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 181 Blast hits to 181 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 71; Fungi - 79; Plants - 19; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G14620.1p  transcript_id AT1G14620.1  protein_id AT1G14620.1p  transcript_id AT1G14620.1  
At1g14620	chr1:005014985	0.0	C/5014985-5015089,5015177-5015302,5015397-5015526,5015622-5015696,5016046-5016111,5016341-5016501	AT1G14620.2 CDS  gene_syn DECOY, T5E21.12, T5E21_12  gene DECOY  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DECOY (DECOY)  note DECOY (DECOY); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.  protein_id AT1G14620.2p  transcript_id AT1G14620.2  protein_id AT1G14620.2p  transcript_id AT1G14620.2  
At1g14630	chr1:005019995	0.0	W/5019995-5020073,5020327-5020511,5020620-5020671,5020832-5020924,5021174-5021445	AT1G14630.1 CDS  gene_syn T5E21.19, T5E21_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 61 Blast hits to 60 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14630.1p  transcript_id AT1G14630.1  protein_id AT1G14630.1p  transcript_id AT1G14630.1  
At1g14640	chr1:005023656	0.0	W/5023656-5025716,5025809-5025955	AT1G14640.1 CDS  gene_syn T5E21.18, T5E21_18  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: male gametophyte, flower, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 27099 Blast hits to 16547 proteins in 854 species: Archae - 36; Bacteria - 2584; Metazoa - 12357; Fungi - 3580; Plants - 4182; Viruses - 702; Other Eukaryotes - 3658 (source: NCBI BLink).  protein_id AT1G14640.1p  transcript_id AT1G14640.1  protein_id AT1G14640.1p  transcript_id AT1G14640.1  
At1g14642	chr1:005026364	0.0	W/5026364-5026405,5026496-5026558	AT1G14642.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G14642.1p  transcript_id AT1G14642.1  protein_id AT1G14642.1p  transcript_id AT1G14642.1  
At1g14650	chr1:005028077	0.0	W/5028077-5030176,5030263-5030520	AT1G14650.1 CDS  gene_syn T5E21.13, T5E21_13  go_process RNA processing|GO:0006396||IEA  go_process protein modification process|GO:0006464||IEA  go_function RNA binding|GO:0003723||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: protein modification process, RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 33373 Blast hits to 19493 proteins in 943 species: Archae - 38; Bacteria - 3212; Metazoa - 15688; Fungi - 4389; Plants - 5098; Viruses - 859; Other Eukaryotes - 4089 (source: NCBI BLink).  protein_id AT1G14650.1p  transcript_id AT1G14650.1  protein_id AT1G14650.1p  transcript_id AT1G14650.1  
At1g14650	chr1:005028077	0.0	W/5028077-5030176,5030263-5030520	AT1G14650.2 CDS  gene_syn T5E21.13, T5E21_13  go_process RNA processing|GO:0006396||IEA  go_process protein modification process|GO:0006464||IEA  go_function RNA binding|GO:0003723||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: protein modification process, RNA processing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT1G14640.1); Has 33373 Blast hits to 19493 proteins in 943 species: Archae - 38; Bacteria - 3212; Metazoa - 15688; Fungi - 4389; Plants - 5098; Viruses - 859; Other Eukaryotes - 4089 (source: NCBI BLink).  protein_id AT1G14650.2p  transcript_id AT1G14650.2  protein_id AT1G14650.2p  transcript_id AT1G14650.2  
At1g14660	chr1:005032163	0.0	C/5032163-5032297,5032379-5032510,5032595-5032692,5032833-5033135,5033226-5033454,5033768-5033875,5033964-5034008,5034145-5034329,5034532-5034584,5034717-5034761,5034856-5034921,5034998-5035050,5035136-5035253,5035333-5035434,5035517-5035674,5035760-5035837,5035913-5036004,5036073-5036123,5036220-5036439	AT1G14660.1 CDS  gene_syn ATNHX8, F10B6.1, F10B6_1, NHX8, SODIUM HYDROGEN EXCHANGER 8  gene ATNHX8  function member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification.  go_component plasma membrane|GO:0005886|17270011|IDA  go_process sodium ion transport|GO:0006814|17270011|IGI  go_process sodium ion transport|GO:0006814||ISS  go_process lithium ion transport|GO:0010351|17270011|IGI  go_process lithium ion export|GO:0010352|17270011|IMP  go_function lithium:hydrogen antiporter activity|GO:0010348|17270011|IGI  go_function sodium ion transmembrane transporter activity|GO:0015081|17270011|IGI  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATNHX8; lithium:hydrogen antiporter/ sodium ion transmembrane transporter/ sodium:hydrogen antiporter  note ATNHX8; FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity, lithium:hydrogen antiporter activity; INVOLVED IN: lithium ion transport, sodium ion transport, lithium ion export; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: SOS1 (SALT OVERLY SENSITIVE 1); sodium:hydrogen antiporter (TAIR:AT2G01980.1); Has 4953 Blast hits to 4934 proteins in 1136 species: Archae - 78; Bacteria - 3109; Metazoa - 825; Fungi - 100; Plants - 263; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT1G14660.1p  transcript_id AT1G14660.1  protein_id AT1G14660.1p  transcript_id AT1G14660.1  
At1g14670	chr1:005037669	0.0	W/5037669-5037820,5038100-5038140,5038249-5038834,5038911-5039048,5039159-5039315,5039411-5039895,5039980-5040199	AT1G14670.1 CDS  gene_syn F10B6.3, F10B6_3  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component integral to membrane|GO:0016021||ISS  go_process transport|GO:0006810||ISS  product endomembrane protein 70, putative  note endomembrane protein 70, putative; INVOLVED IN: transport; LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: endomembrane protein 70, putative (TAIR:AT2G01970.1); Has 1019 Blast hits to 989 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 153; Plants - 235; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT1G14670.1p  transcript_id AT1G14670.1  protein_id AT1G14670.1p  transcript_id AT1G14670.1  
At1g14680	chr1:005040861	0.0	W/5040861-5041733	AT1G14680.1 CDS  gene_syn F10B6.4, F10B6_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09060.1); Has 7013 Blast hits to 5372 proteins in 466 species: Archae - 108; Bacteria - 388; Metazoa - 3676; Fungi - 303; Plants - 203; Viruses - 23; Other Eukaryotes - 2312 (source: NCBI BLink).  protein_id AT1G14680.1p  transcript_id AT1G14680.1  protein_id AT1G14680.1p  transcript_id AT1G14680.1  
At1g14685	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.1 CDS  gene_syn ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2, BPC2, F10B6.5, F10B6_5  gene BPC2  function Arabidopsis GBP Basic Penta Cysteine 1  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor  note BASIC PENTACYSTEINE 2 (BPC2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC1 (BASIC PENTACYSTEINE1); DNA binding / specific transcriptional repressor/ transcription factor (TAIR:AT2G01930.2); Has 141 Blast hits to 141 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G14685.1p  transcript_id AT1G14685.1  protein_id AT1G14685.1p  transcript_id AT1G14685.1  
At1g14685	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.2 CDS  gene_syn ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2, BPC2, F10B6.5, F10B6_5  gene BPC2  function Arabidopsis GBP Basic Penta Cysteine 1  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor  note BASIC PENTACYSTEINE 2 (BPC2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC1 (BASIC PENTACYSTEINE1); DNA binding / specific transcriptional repressor/ transcription factor (TAIR:AT2G01930.2); Has 141 Blast hits to 141 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G14685.2p  transcript_id AT1G14685.2  protein_id AT1G14685.2p  transcript_id AT1G14685.2  
At1g14685	chr1:005043086	0.0	W/5043086-5043925	AT1G14685.3 CDS  gene_syn ATBPC2, BASIC PENTACYSTEINE 2, BBR/BPC2, BPC2, F10B6.5, F10B6_5  gene BPC2  function Arabidopsis GBP Basic Penta Cysteine 1  go_component nucleus|GO:0005634|14731261|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|14731261|IPI  go_function DNA binding|GO:0003677|14731261|IPI  go_function transcription factor activity|GO:0003700|14731261|IPI  product BPC2 (BASIC PENTACYSTEINE 2); DNA binding / transcription factor  note BASIC PENTACYSTEINE 2 (BPC2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: BPC1 (BASIC PENTACYSTEINE1); DNA binding / specific transcriptional repressor/ transcription factor (TAIR:AT2G01930.2); Has 141 Blast hits to 141 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G14685.3p  transcript_id AT1G14685.3  protein_id AT1G14685.3p  transcript_id AT1G14685.3  
At1g14686	chr1:005045781	0.0	C/5045781-5046800	AT1G14686.1 CDS  go_component clathrin coat|GO:0030118||IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT2G01920.1); Has 179 Blast hits to 158 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14686.1p  transcript_id AT1G14686.1  protein_id AT1G14686.1p  transcript_id AT1G14686.1  
At1g14687	chr1:005048046	0.0	W/5048046-5048552	AT1G14687.1 CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32, AtHB32  gene AtHB32  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677|16428600|ISS  go_function transcription factor activity|GO:0003700||ISS  product AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32 (AtHB32); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox domain, ZF-HD class (InterPro:IPR006455), ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27); DNA binding / transcription factor (TAIR:AT5G42780.1); Has 294 Blast hits to 244 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 294; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14687.1p  transcript_id AT1G14687.1  protein_id AT1G14687.1p  transcript_id AT1G14687.1  
At1g14688	chr1:005049654	0.0	C/5049654-5049834,5049920-5050038,5050160-5050213,5050761-5050879,5050944-5050983	AT1G14688.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14688.1p  transcript_id AT1G14688.1  protein_id AT1G14688.1p  transcript_id AT1G14688.1  
At1g14690	chr1:005052090	0.0	C/5052090-5052428,5052518-5052592,5052667-5052740,5052819-5052906,5052976-5053127,5053216-5053375,5053467-5053622,5053710-5053925,5054025-5054294,5054386-5054589,5054859-5054936	AT1G14690.1 CDS  gene_syn F10B6.8, F10B6_8, MAP65-7, MICROTUBULE-ASSOCIATED PROTEIN 65-7  gene MAP65-7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)  note MICROTUBULE-ASSOCIATED PROTEIN 65-7 (MAP65-7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: ATMAP65-6; microtubule binding (TAIR:AT2G01910.1); Has 3089 Blast hits to 2642 proteins in 263 species: Archae - 41; Bacteria - 144; Metazoa - 1679; Fungi - 242; Plants - 221; Viruses - 6; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G14690.1p  transcript_id AT1G14690.1  protein_id AT1G14690.1p  transcript_id AT1G14690.1  
At1g14690	chr1:005052090	0.0	C/5052090-5052428,5052518-5052592,5052667-5052740,5052819-5052906,5052976-5053127,5053216-5053375,5053467-5053622,5053710-5053925,5054025-5054294,5054386-5054589,5054859-5054936	AT1G14690.2 CDS  gene_syn F10B6.8, F10B6_8, MAP65-7, MICROTUBULE-ASSOCIATED PROTEIN 65-7  gene MAP65-7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)  note MICROTUBULE-ASSOCIATED PROTEIN 65-7 (MAP65-7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: ATMAP65-6; microtubule binding (TAIR:AT2G01910.1); Has 3089 Blast hits to 2642 proteins in 263 species: Archae - 41; Bacteria - 144; Metazoa - 1679; Fungi - 242; Plants - 221; Viruses - 6; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G14690.2p  transcript_id AT1G14690.2  protein_id AT1G14690.2p  transcript_id AT1G14690.2  
At1g14700	chr1:005058680	0.0	W/5058680-5058967,5059473-5059629,5059726-5059833,5059930-5060057,5060361-5060489,5060584-5060651,5060766-5060988	AT1G14700.1 CDS  gene_syn ATPAP3, F10B6.10, F10B6_10, PAP3, PURPLE ACID PHOSPHATASE 3  gene PAP3  go_component vacuole|GO:0005773|15539469|IDA  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP3 (PURPLE ACID PHOSPHATASE 3); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 3 (PAP3); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: PAP8 (PURPLE ACID PHOSPHATASE 8); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G01890.1); Has 859 Blast hits to 854 proteins in 209 species: Archae - 0; Bacteria - 160; Metazoa - 324; Fungi - 6; Plants - 98; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G14700.1p  transcript_id AT1G14700.1  protein_id AT1G14700.1p  transcript_id AT1G14700.1  
At1g14700	chr1:005058680	0.0	W/5058680-5058967,5059473-5059629,5059732-5059833,5059930-5060057,5060361-5060489,5060584-5060651,5060766-5060988	AT1G14700.2 CDS  gene_syn ATPAP3, F10B6.10, F10B6_10, PAP3, PURPLE ACID PHOSPHATASE 3  gene PAP3  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product PAP3 (PURPLE ACID PHOSPHATASE 3); acid phosphatase/ protein serine/threonine phosphatase  note PURPLE ACID PHOSPHATASE 3 (PAP3); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: PAP8 (PURPLE ACID PHOSPHATASE 8); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT2G01890.1); Has 836 Blast hits to 831 proteins in 205 species: Archae - 0; Bacteria - 154; Metazoa - 323; Fungi - 6; Plants - 95; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT1G14700.2p  transcript_id AT1G14700.2  protein_id AT1G14700.2p  transcript_id AT1G14700.2  
At1g14710	chr1:005062168	0.0	C/5062168-5062717,5062807-5062961,5063067-5063179,5063252-5063359,5063438-5063555,5063631-5063734,5063823-5063930,5064148-5064697	AT1G14710.1 CDS  gene_syn F10B6.11, F10B6_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 5735 Blast hits to 3206 proteins in 329 species: Archae - 2; Bacteria - 358; Metazoa - 1960; Fungi - 509; Plants - 1789; Viruses - 379; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT1G14710.1p  transcript_id AT1G14710.1  protein_id AT1G14710.1p  transcript_id AT1G14710.1  
At1g14710	chr1:005062168	0.0	C/5062168-5062717,5062807-5062961,5063067-5063179,5063252-5063359,5063438-5063555,5063631-5063734,5063823-5063930,5064148-5064697	AT1G14710.2 CDS  gene_syn F10B6.11, F10B6_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 5735 Blast hits to 3206 proteins in 329 species: Archae - 2; Bacteria - 358; Metazoa - 1960; Fungi - 509; Plants - 1789; Viruses - 379; Other Eukaryotes - 738 (source: NCBI BLink).  protein_id AT1G14710.2p  transcript_id AT1G14710.2  protein_id AT1G14710.2p  transcript_id AT1G14710.2  
At1g14720	chr1:005066806	0.0	C/5066806-5067310,5067782-5067990,5068095-5068195,5068283-5068466	AT1G14720.1 CDS  gene_syn ATXTH28, ENDOXYLOGLUCAN TRANSFERASE A2, EXGT-A2, F10B6.12, F10B6_12, XTR2, XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2, XYLOGLUCAN ENDOTRANSGLYCOSYLASE-RELATED PROTEIN  gene XTR2  function member of Glycoside Hydrolase Family 16  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process fruit development|GO:0010154|19139039|IMP  go_process stamen filament development|GO:0080086|19139039|IMP  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762|10557219|ISS  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2 (XTR2); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: fruit development, stamen filament development; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: EXGT-A3; hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase (TAIR:AT2G01850.1); Has 1298 Blast hits to 1292 proteins in 202 species: Archae - 0; Bacteria - 175; Metazoa - 0; Fungi - 264; Plants - 795; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G14720.1p  transcript_id AT1G14720.1  protein_id AT1G14720.1p  transcript_id AT1G14720.1  
At1g14730	chr1:005073244	0.0	W/5073244-5073408,5073587-5073635,5073986-5074185,5074308-5074568	AT1G14730.1 CDS  gene_syn F10B6.13, F10B6_13  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  product unknown protein  note LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: ACYB-1; carbon-monoxide oxygenase (TAIR:AT5G38630.1); Has 447 Blast hits to 446 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 321; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G14730.1p  transcript_id AT1G14730.1  protein_id AT1G14730.1p  transcript_id AT1G14730.1  
At1g14740	chr1:005075450	0.0	C/5075450-5075925,5076007-5077732	AT1G14740.1 CDS  gene_syn F10B6.14, F10B6_14  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63500.2); Has 274 Blast hits to 273 proteins in 62 species: Archae - 3; Bacteria - 25; Metazoa - 56; Fungi - 9; Plants - 128; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G14740.1p  transcript_id AT1G14740.1  protein_id AT1G14740.1p  transcript_id AT1G14740.1  
At1g14750	chr1:005079674	0.0	C/5079674-5079700,5079798-5079842,5079936-5080116,5080205-5080333,5080631-5080797,5081047-5081214,5081404-5081655,5082160-5082423	AT1G14750.2 CDS  gene_syn F10B6.15, F10B6_15, SDS, SOLO DANCERS  gene SDS  function mutant shows aberrant homolog pairing in meiosis  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product SDS (SOLO DANCERS); cyclin-dependent protein kinase  note SOLO DANCERS (SDS); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;2 (Cyclin B2;2); cyclin-dependent protein kinase regulator (TAIR:AT4G35620.1); Has 2658 Blast hits to 2654 proteins in 264 species: Archae - 0; Bacteria - 0; Metazoa - 1413; Fungi - 286; Plants - 629; Viruses - 3; Other Eukaryotes - 327 (source: NCBI BLink).  protein_id AT1G14750.2p  transcript_id AT1G14750.2  protein_id AT1G14750.2p  transcript_id AT1G14750.2  
At1g14750	chr1:005079674	0.0	C/5079674-5079700,5079798-5079842,5079936-5080116,5080205-5080333,5080631-5080797,5081047-5081214,5081404-5082423	AT1G14750.1 CDS  gene_syn F10B6.15, F10B6_15, SDS, SOLO DANCERS  gene SDS  function mutant shows aberrant homolog pairing in meiosis  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product SDS (SOLO DANCERS); cyclin-dependent protein kinase  note SOLO DANCERS (SDS); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;2 (Cyclin B2;2); cyclin-dependent protein kinase regulator (TAIR:AT4G35620.1); Has 2832 Blast hits to 2759 proteins in 277 species: Archae - 0; Bacteria - 38; Metazoa - 1460; Fungi - 334; Plants - 629; Viruses - 3; Other Eukaryotes - 368 (source: NCBI BLink).  protein_id AT1G14750.1p  transcript_id AT1G14750.1  protein_id AT1G14750.1p  transcript_id AT1G14750.1  
At1g14755	chr1:005083765	0.0	W/5083765-5083825,5083923-5084098	AT1G14755.1 CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14755.1p  transcript_id AT1G14755.1  protein_id AT1G14755.1p  transcript_id AT1G14755.1  
At1g14760	chr1:005084530	0.0	C/5084530-5084655,5084826-5084951,5085049-5085213	AT1G14760.2 CDS  gene_syn F10B6.16, F10B6_16, KNATM, KNOX ARABIDOPSIS THALIANA MEINOX  gene KNATM  product KNATM (KNOX ARABIDOPSIS THALIANA MEINOX)  note KNOX ARABIDOPSIS THALIANA MEINOX (KNATM); EXPRESSED IN: shoot apex, sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540), KNOX2 (InterPro:IPR005541); BEST Arabidopsis thaliana protein match is: KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor (TAIR:AT4G08150.1).  protein_id AT1G14760.2p  transcript_id AT1G14760.2  protein_id AT1G14760.2p  transcript_id AT1G14760.2  
At1g14760	chr1:005084530	0.0	C/5084530-5084655,5085049-5085213	AT1G14760.3 CDS  gene_syn F10B6.16, F10B6_16, KNATM, KNOX ARABIDOPSIS THALIANA MEINOX  gene KNATM  product KNATM (KNOX ARABIDOPSIS THALIANA MEINOX)  note KNOX ARABIDOPSIS THALIANA MEINOX (KNATM); EXPRESSED IN: shoot apex, sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540).  protein_id AT1G14760.3p  transcript_id AT1G14760.3  protein_id AT1G14760.3p  transcript_id AT1G14760.3  
At1g14760	chr1:005084688	0.0	C/5084688-5084951,5085049-5085213	AT1G14760.1 CDS  gene_syn F10B6.16, F10B6_16, KNATM, KNOX ARABIDOPSIS THALIANA MEINOX  gene KNATM  go_component nucleus|GO:0005634|18398054|IDA  go_component cytoplasm|GO:0005737|18398054|IDA  go_process leaf proximal/distal pattern formation|GO:0010589|18398054|IMP  go_function transcription activator activity|GO:0016563|18398054|IDA  product KNATM (KNOX ARABIDOPSIS THALIANA MEINOX); transcription activator  note KNOX ARABIDOPSIS THALIANA MEINOX (KNATM); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf proximal/distal pattern formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: KNOX1 (InterPro:IPR005540); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14760.1p  transcript_id AT1G14760.1  protein_id AT1G14760.1p  transcript_id AT1G14760.1  
At1g14770	chr1:005086867	0.0	C/5086867-5087706,5087813-5087920,5088022-5088224,5088299-5088437	AT1G14770.1 CDS  gene_syn F10B6.17, F10B6_17  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger protein-related (TAIR:AT1G68030.1); Has 45 Blast hits to 42 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 7; Plants - 23; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G14770.1p  transcript_id AT1G14770.1  protein_id AT1G14770.1p  transcript_id AT1G14770.1  
At1g14770	chr1:005086867	0.0	C/5086867-5087706,5087813-5087920,5088022-5088224,5088299-5088437	AT1G14770.2 CDS  gene_syn F10B6.17, F10B6_17  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger protein-related (TAIR:AT1G68030.1); Has 45 Blast hits to 42 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 7; Plants - 23; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G14770.2p  transcript_id AT1G14770.2  protein_id AT1G14770.2p  transcript_id AT1G14770.2  
At1g14780	chr1:005091020	0.0	W/5091020-5091283,5091387-5091631,5092118-5092331,5092456-5092530,5092614-5092797,5092888-5093057,5093142-5093873	AT1G14780.1 CDS  gene_syn F10B6.18, F10B6_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24290.2); Has 119 Blast hits to 118 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14780.1p  transcript_id AT1G14780.1  protein_id AT1G14780.1p  transcript_id AT1G14780.1  
At1g14790	chr1:005094317	0.0	C/5094317-5095129,5095210-5095360,5095458-5097817	AT1G14790.1 CDS  gene_syn ATRDRP1, F10B6.19, F10B6_19, RDR1, RNA-DEPENDENT RNA POLYMERASE 1  gene RDR1  function Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.  go_process response to virus|GO:0009615|12650452|IMP  go_process response to salicylic acid stimulus|GO:0009751|15024409|IEP  go_process posttranscriptional gene silencing|GO:0016441||ISS  go_process positive regulation of posttranscriptional gene silencing|GO:0060148|17586651|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA-directed RNA polymerase activity|GO:0003968||ISS  product RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding  note RNA-DEPENDENT RNA POLYMERASE 1 (RDR1); FUNCTIONS IN: RNA-directed RNA polymerase activity, nucleic acid binding; INVOLVED IN: positive regulation of posttranscriptional gene silencing, response to virus, posttranscriptional gene silencing, response to salicylic acid stimulus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RDR2 (RNA-DEPENDENT RNA POLYMERASE 2); RNA-directed RNA polymerase (TAIR:AT4G11130.1); Has 366 Blast hits to 356 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 161; Plants - 112; Viruses - 2; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G14790.1p  transcript_id AT1G14790.1  protein_id AT1G14790.1p  transcript_id AT1G14790.1  
At1g14800	chr1:005099572	0.0	W/5099572-5099751,5099835-5100108,5100188-5100269,5100352-5100419,5100529-5100611,5100734-5100854,5101020-5101245,5102438-5102558	AT1G14800.1 CDS  gene_syn F10B6.21, F10B6_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G35280.1); Has 109 Blast hits to 109 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14800.1p  transcript_id AT1G14800.1  protein_id AT1G14800.1p  transcript_id AT1G14800.1  
At1g14810	chr1:005102684	0.0	C/5102684-5102765,5102847-5103001,5103339-5103440,5103537-5103632,5103728-5103772,5103874-5103960,5104073-5104633	AT1G14810.1 CDS  gene_syn F10B6.22, F10B6_22  function encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process amino acid metabolic process|GO:0006520||IEA  go_process metabolic process|GO:0008152||IEA  go_process amino acid biosynthetic process|GO:0008652||IEA  go_process methionine biosynthetic process|GO:0009086||IEA  go_process threonine biosynthetic process|GO:0009088||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process amino acid metabolic process|GO:0006520||ISS  go_function aspartate-semialdehyde dehydrogenase activity|GO:0004073|11812229|IDA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor|GO:0016620||ISS  product semialdehyde dehydrogenase family protein  note semialdehyde dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, aspartate-semialdehyde dehydrogenase activity; INVOLVED IN: amino acid metabolic process, threonine biosynthetic process, amino acid biosynthetic process, methionine biosynthetic process, metabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Semialdehyde dehydrogenase, dimerisation region (InterPro:IPR012280), Semialdehyde dehydrogenase, NAD-binding (InterPro:IPR000534), NAD(P)-binding (InterPro:IPR016040), Aspartate-semialdehyde dehydrogenase, bacterial (InterPro:IPR005986), Aspartate-semialdehyde dehydrogenase (InterPro:IPR012080); Has 7207 Blast hits to 7207 proteins in 1375 species: Archae - 163; Bacteria - 3534; Metazoa - 2; Fungi - 109; Plants - 30; Viruses - 0; Other Eukaryotes - 3369 (source: NCBI BLink).  protein_id AT1G14810.1p  transcript_id AT1G14810.1  protein_id AT1G14810.1p  transcript_id AT1G14810.1  
At1g14820	chr1:005105237	0.0	C/5105237-5105398,5105487-5105597,5105683-5105800,5105888-5105924,5106163-5106421,5106722-5106793	AT1G14820.3 CDS  gene_syn F10B6.40, F10B6_40  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT1G01630.1); Has 1147 Blast hits to 1147 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 313; Plants - 357; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).  protein_id AT1G14820.3p  transcript_id AT1G14820.3  protein_id AT1G14820.3p  transcript_id AT1G14820.3  
At1g14820	chr1:005105237	0.0	C/5105237-5105398,5105487-5105597,5105683-5105800,5105888-5105924,5106163-5106454	AT1G14820.1 CDS  gene_syn F10B6.40, F10B6_40  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT1G01630.1); Has 1082 Blast hits to 1082 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 275; Fungi - 311; Plants - 353; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G14820.1p  transcript_id AT1G14820.1  protein_id AT1G14820.1p  transcript_id AT1G14820.1  
At1g14820	chr1:005105237	0.0	C/5105237-5105398,5105487-5105597,5105683-5105800,5105888-5105924,5106163-5106454	AT1G14820.2 CDS  gene_syn F10B6.40, F10B6_40  go_component cellular_component|GO:0005575||ND  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative (TAIR:AT1G01630.1); Has 1082 Blast hits to 1082 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 275; Fungi - 311; Plants - 353; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G14820.2p  transcript_id AT1G14820.2  protein_id AT1G14820.2p  transcript_id AT1G14820.2  
At1g14830	chr1:005107699	0.0	C/5107699-5107824,5107919-5108058,5108137-5108377,5108471-5108521,5108615-5108840,5109161-5109231,5109317-5109436,5109531-5109725,5109821-5109885,5109977-5110067,5110215-5110276,5110384-5110434,5110636-5110737,5110829-5110936,5111156-5111219,5111339-5111470	AT1G14830.1 CDS  gene_syn ADL1C, ADL5, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DRP1C, DYNAMIN RELATED PROTEIN 1C, DYNAMIN-LIKE PROTEIN 5, F10B6.23, F10B6_23  gene ADL1C  function Encodes a dynamin-like protein that is involved in mitochondrial morphogenesis and pollen development. Protein is localized as speckles in the cytoplasm, partially co-localizes with mitochondrial markers, cell plate of dividing cells, and the tip of root hairs, root cap cells, and expanding part of trichoblasts.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component cell cortex|GO:0005938|18344418|IDA  go_component cell plate|GO:0009504|12834397|IDA  go_process mitochondrial fission|GO:0000266|14523248|IMP  go_process mitochondrion organization|GO:0007005|14523248|IMP  go_process pollen maturation|GO:0010152|12834397|IMP  go_function GTPase activity|GO:0003924||ISS  go_function GTP binding|GO:0005525||ISS  product ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C); GTP binding / GTPase  note ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C (ADL1C); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: pollen maturation, mitochondrial fission, mitochondrion organization; LOCATED IN: cell cortex, plasma membrane, membrane, cell plate; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase region (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E); GTP binding / GTPase (TAIR:AT3G60190.1); Has 2080 Blast hits to 2017 proteins in 244 species: Archae - 2; Bacteria - 27; Metazoa - 938; Fungi - 511; Plants - 324; Viruses - 0; Other Eukaryotes - 278 (source: NCBI BLink).  protein_id AT1G14830.1p  transcript_id AT1G14830.1  protein_id AT1G14830.1p  transcript_id AT1G14830.1  
At1g14840	chr1:005112415	0.0	C/5112415-5112454,5112542-5112729,5112825-5113352,5113432-5113503,5113612-5113758,5113863-5114018,5114125-5114295,5114402-5114572,5114654-5114719,5114919-5115004,5115110-5115299	AT1G14840.1 CDS  gene_syn ATMAP70-4, F10B6.24, F10B6_24, microtubule-associated proteins 70-4  gene ATMAP70-4  function Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component microtubule|GO:0005874|15860013|ISS  go_process cytoskeleton organization|GO:0007010|15860013|TAS  go_function microtubule binding|GO:0008017|15860013|ISS  product ATMAP70-4 (microtubule-associated proteins 70-4); microtubule binding  note microtubule-associated proteins 70-4 (ATMAP70-4); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule, plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: ATMAP70-3 (microtubule-associated proteins 70-3); microtubule binding (TAIR:AT2G01750.1); Has 35523 Blast hits to 20964 proteins in 1282 species: Archae - 436; Bacteria - 3391; Metazoa - 19691; Fungi - 2541; Plants - 1360; Viruses - 197; Other Eukaryotes - 7907 (source: NCBI BLink).  protein_id AT1G14840.1p  transcript_id AT1G14840.1  protein_id AT1G14840.1p  transcript_id AT1G14840.1  
At1g14850	chr1:005116921	0.0	C/5116921-5117029,5117152-5117477,5117564-5117782,5118150-5118507,5118643-5118839,5119100-5119475,5119783-5120030,5120115-5120327,5120429-5122058,5122183-5122445,5122544-5122670,5122776-5122945,5123101-5123259	AT1G14850.1 CDS  gene_syn F10B6.25, F10B6_25, NUP155  gene NUP155  function Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component nuclear pore|GO:0005643|12034489|ISS  go_component plasma membrane|GO:0005886|16618929|IDA  go_process nucleocytoplasmic transport|GO:0006913|12034489|ISS  go_function nucleocytoplasmic transporter activity|GO:0005487|12034489|ISS  product NUP155; nucleocytoplasmic transporter  note NUP155; FUNCTIONS IN: nucleocytoplasmic transporter activity; INVOLVED IN: nucleocytoplasmic transport; LOCATED IN: nucleolus, plasma membrane, chloroplast, nuclear pore; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, non-repetitive/WGA-negative (InterPro:IPR004870); Has 307 Blast hits to 273 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 105; Plants - 36; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G14850.1p  transcript_id AT1G14850.1  protein_id AT1G14850.1p  transcript_id AT1G14850.1  
At1g14860	chr1:005124993	0.0	W/5124993-5125063,5125138-5125243,5125359-5125442,5125536-5125805	AT1G14860.1 CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 18, F10B6.26, F10B6_26, atnudt18  gene atnudt18  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 18 (atnudt18); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17); hydrolase (TAIR:AT2G01670.1); Has 654 Blast hits to 652 proteins in 183 species: Archae - 0; Bacteria - 168; Metazoa - 195; Fungi - 79; Plants - 132; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).  protein_id AT1G14860.1p  transcript_id AT1G14860.1  protein_id AT1G14860.1p  transcript_id AT1G14860.1  
At1g14870	chr1:005128591	0.0	C/5128591-5128676,5128790-5129002,5129094-5129165,5129371-5129458	AT1G14870.1 CDS  gene_syn F10B6.27, F10B6_27  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35525.1); Has 492 Blast hits to 491 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 93; Fungi - 76; Plants - 297; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G14870.1p  transcript_id AT1G14870.1  protein_id AT1G14870.1p  transcript_id AT1G14870.1  
At1g14880	chr1:005132791	0.0	C/5132791-5132876,5132989-5133201,5133302-5133373,5133579-5133663	AT1G14880.1 CDS  gene_syn F10B6.29, F10B6_29  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14870.1); Has 485 Blast hits to 484 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 72; Plants - 293; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G14880.1p  transcript_id AT1G14880.1  protein_id AT1G14880.1p  transcript_id AT1G14880.1  
At1g14890	chr1:005137045	0.0	W/5137045-5137704	AT1G14890.1 CDS  gene_syn F10B6.30, F10B6_30  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor  note enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT2G01610.1); Has 402 Blast hits to 397 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 402; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14890.1p  transcript_id AT1G14890.1  protein_id AT1G14890.1p  transcript_id AT1G14890.1  
At1g14900	chr1:005138665	0.0	C/5138665-5139195,5139270-5139353	AT1G14900.1 CDS  gene_syn F10B6.31, F10B6_31, HIGH MOBILITY GROUP A, HMGA  gene HMGA  function Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA.  go_process nucleosome assembly|GO:0006334||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nuclear chromatin|GO:0000790|17114349|IDA  go_component nucleus|GO:0005634|17114349|IDA  go_component nucleus|GO:0005634||ISS  go_component cytosol|GO:0005829|17114349|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|17114349|IDA  go_function DNA binding|GO:0003677||ISS  product HMGA (HIGH MOBILITY GROUP A); DNA binding  note HIGH MOBILITY GROUP A (HMGA); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, nucleosome assembly; LOCATED IN: nuclear chromatin, cytosol, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), AT hook, DNA-binding, conserved site (InterPro:IPR017956), High mobility group, HMG-I and HMG-Y (InterPro:IPR000116), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: HON5 (High Mobility Group Family A 5); DNA binding (TAIR:AT1G48620.1); Has 1042 Blast hits to 933 proteins in 178 species: Archae - 0; Bacteria - 95; Metazoa - 366; Fungi - 136; Plants - 358; Viruses - 9; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G14900.1p  transcript_id AT1G14900.1  protein_id AT1G14900.1p  transcript_id AT1G14900.1  
At1g14910	chr1:005139928	0.0	C/5139928-5140665,5140801-5140916,5141005-5141083,5141172-5141354,5141445-5141525,5141616-5141696,5141771-5141836,5141927-5141992,5142124-5142174,5142298-5142390,5142476-5142603,5142721-5142859,5143093-5143190,5143288-5143357,5143482-5143571	AT1G14910.1 CDS  gene_syn F10B6.32, F10B6_32  go_component mitochondrion|GO:0005739||IEA  go_component clathrin coat|GO:0030118||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein  note epsin N-terminal homology (ENTH) domain-containing protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: N-terminal protein myristoylation, clathrin coat assembly; LOCATED IN: clathrin coat, mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein (TAIR:AT2G01600.1); Has 1079 Blast hits to 917 proteins in 171 species: Archae - 2; Bacteria - 57; Metazoa - 439; Fungi - 204; Plants - 279; Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G14910.1p  transcript_id AT1G14910.1  protein_id AT1G14910.1p  transcript_id AT1G14910.1  
At1g14920	chr1:005149414	0.0	W/5149414-5151015	AT1G14920.1 CDS  gene_syn F10B6.34, F10B6_34, GAI, GAI PROTEIN, GIBBERELLIC ACID INSENSITIVE, RESTORATION ON GROWTH ON AMMONIA 2, RGA2  gene GAI  function Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.  go_component nucleus|GO:0005634|10421366|TAS  go_component nucleus|GO:0005634|10713441|ISS  go_component nucleus|GO:0005634|12492836|IDA  go_process regulation of nitrogen utilization|GO:0006808|9237632|IMP  go_process response to salt stress|GO:0009651|16400150|IGI  go_process response to ethylene stimulus|GO:0009723|16400150|IGI  go_process response to abscisic acid stimulus|GO:0009737|16400150|IGI  go_process response to gibberellin stimulus|GO:0009739|17333251|IEP  go_process gibberellic acid mediated signaling|GO:0009740|10421366|TAS  go_process seed germination|GO:0009845|17141619|IGI  go_process salicylic acid mediated signaling pathway|GO:0009863|18450451|IGI  go_process jasmonic acid mediated signaling pathway|GO:0009867|18450451|IGI  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938|11925042|TAS  go_process negative regulation of gibberellic acid mediated signaling|GO:0009938|17416730|IMP  go_process seed dormancy|GO:0010162|17141619|IGI  go_process negative regulation of seed germination|GO:0010187|17449805|IGI  go_process response to far red light|GO:0010218|17449805|IEP  go_process phloem transport|GO:0010233|15773853|IMP  go_process hyperosmotic salinity response|GO:0042538|16400150|IGI  go_process regulation of oxygen and reactive oxygen species metabolic process|GO:0080010|18450450|IGI  go_function transcription factor activity|GO:0003700|10421366|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487693|ISS  go_function transcription factor activity|GO:0003700|9237632|ISS  product GAI (GIBBERELLIC ACID INSENSITIVE); transcription factor  note GIBBERELLIC ACID INSENSITIVE (GAI); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 16 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor (TAIR:AT2G01570.1); Has 1598 Blast hits to 1557 proteins in 199 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1594; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14920.1p  transcript_id AT1G14920.1  protein_id AT1G14920.1p  transcript_id AT1G14920.1  
At1g14930	chr1:005152465	0.0	C/5152465-5152745,5152849-5153035	AT1G14930.1 CDS  gene_syn F10B6.35, F10B6_35  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G14940.1); Has 239 Blast hits to 218 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14930.1p  transcript_id AT1G14930.1  protein_id AT1G14930.1p  transcript_id AT1G14930.1  
At1g14940	chr1:005154775	0.0	C/5154775-5155055,5155326-5155512	AT1G14940.1 CDS  gene_syn F10B6.37, F10B6_37  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G14930.1); Has 223 Blast hits to 201 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14940.1p  transcript_id AT1G14940.1  protein_id AT1G14940.1p  transcript_id AT1G14940.1  
At1g14950	chr1:005157588	0.0	C/5157588-5157868,5157958-5158144	AT1G14950.1 CDS  gene_syn F10B6.38, F10B6_38  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G14930.1); Has 236 Blast hits to 216 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 236; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14950.1p  transcript_id AT1G14950.1  protein_id AT1G14950.1p  transcript_id AT1G14950.1  
At1g14960	chr1:005159334	0.0	C/5159334-5159608,5159806-5159992	AT1G14960.1 CDS  gene_syn F10B6.39, F10B6_39  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G14950.1); Has 230 Blast hits to 208 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 230; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14960.1p  transcript_id AT1G14960.1  protein_id AT1G14960.1p  transcript_id AT1G14960.1  
At1g14970	chr1:005162085	0.0	C/5162085-5162235,5162329-5162519,5162596-5162763,5162974-5163141,5163269-5163473,5163606-5163803,5163902-5163990,5164106-5164173,5164278-5164347,5164537-5164917	AT1G14970.1 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01480.1); Has 431 Blast hits to 424 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14970.1p  transcript_id AT1G14970.1  protein_id AT1G14970.1p  transcript_id AT1G14970.1  
At1g14980	chr1:005165930	0.0	C/5165930-5165981,5166324-5166463,5166550-5166654	AT1G14980.1 CDS  gene_syn CHAPERONIN 10, CPN10, MITOCHONDRIAL CHAPERONIN 10, T15D22.2, T15D22_2  gene CPN10  function Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component mitochondrion|GO:0005739|12492832|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|9011092|IDA  go_process protein folding|GO:0006457|9011092|IGI  go_process response to heat|GO:0009408|9011092|IEP  go_function chaperone binding|GO:0051087|9011092|ISS  product CPN10 (CHAPERONIN 10); chaperone binding  note CHAPERONIN 10 (CPN10); FUNCTIONS IN: chaperone binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin Cpn10 (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: 10 kDa chaperonin, putative (TAIR:AT1G23100.1); Has 6432 Blast hits to 6359 proteins in 1674 species: Archae - 6; Bacteria - 3682; Metazoa - 251; Fungi - 75; Plants - 211; Viruses - 2; Other Eukaryotes - 2205 (source: NCBI BLink).  protein_id AT1G14980.1p  transcript_id AT1G14980.1  protein_id AT1G14980.1p  transcript_id AT1G14980.1  
At1g14990	chr1:005167354	0.0	C/5167354-5167404,5167586-5167702,5167798-5167879,5168033-5168151	AT1G14990.1 CDS  gene_syn T15D22.3, T15D22_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G14990.1p  transcript_id AT1G14990.1  protein_id AT1G14990.1p  transcript_id AT1G14990.1  
At1g15000	chr1:005168613	0.0	W/5168613-5169947	AT1G15000.1 CDS  gene_syn T15D22.4, T15D22_4, scpl50, serine carboxypeptidase-like 50  gene scpl50  go_component vacuole|GO:0005773|15539469|IDA  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product scpl50 (serine carboxypeptidase-like 50); serine-type carboxypeptidase  note serine carboxypeptidase-like 50 (scpl50); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl48 (serine carboxypeptidase-like 48); serine-type carboxypeptidase (TAIR:AT3G45010.1); Has 2538 Blast hits to 2426 proteins in 320 species: Archae - 0; Bacteria - 215; Metazoa - 624; Fungi - 565; Plants - 842; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT1G15000.1p  transcript_id AT1G15000.1  protein_id AT1G15000.1p  transcript_id AT1G15000.1  
At1g15010	chr1:005171215	0.0	W/5171215-5171643	AT1G15010.1 CDS  gene_syn T15D22.5, T15D22_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1); Has 43 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15010.1p  transcript_id AT1G15010.1  protein_id AT1G15010.1p  transcript_id AT1G15010.1  
At1g15015	chr1:005172340	0.0	W/5172340-5172822	AT1G15015.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box protein-related / SLF-related (TAIR:AT5G10340.1); Has 147 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15015.1p  transcript_id AT1G15015.1  protein_id AT1G15015.1p  transcript_id AT1G15015.1  
At1g15020	chr1:005173246	0.0	C/5173246-5173267,5173441-5173872,5173945-5174091,5174180-5174220,5174315-5174459,5174545-5174621,5174703-5174771,5174867-5174930,5175100-5175281,5175464-5175556,5175639-5175663,5175894-5176105	AT1G15020.1 CDS  gene_syn ATQSOX1, QSO2, QUIESCIN-SULFHYDRYL OXIDASE 1, T15D22.7, T15D22_7  gene ATQSOX1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function thiol oxidase activity|GO:0016972||IEA  go_process response to cation stress|GO:0043157|17568770|IMP  product thioredoxin family protein  note QUIESCIN-SULFHYDRYL OXIDASE 1 (ATQSOX1); FUNCTIONS IN: protein binding, thiol oxidase activity, zinc ion binding; INVOLVED IN: response to cation stress; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Zinc finger, RING-type (InterPro:IPR001841), Erv1/Alr (InterPro:IPR006863), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: AtQSOX2 (quiescin-sulfhydryl oxidase 2); thiol oxidase (TAIR:AT2G01270.1); Has 1824 Blast hits to 1505 proteins in 220 species: Archae - 2; Bacteria - 17; Metazoa - 1093; Fungi - 210; Plants - 281; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT1G15020.1p  transcript_id AT1G15020.1  protein_id AT1G15020.1p  transcript_id AT1G15020.1  
At1g15020	chr1:005173341	0.0	C/5173341-5173872,5173945-5174091,5174180-5174220,5174315-5174459,5174545-5174621,5174703-5174771,5174867-5174930,5175100-5175281,5175464-5175556,5175639-5175663,5175894-5176105	AT1G15020.2 CDS  gene_syn ATQSOX1, QSO2, QUIESCIN-SULFHYDRYL OXIDASE 1, T15D22.7, T15D22_7  gene ATQSOX1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function thiol oxidase activity|GO:0016972||IEA  go_process response to cation stress|GO:0043157|17568770|IMP  product thioredoxin family protein  note QUIESCIN-SULFHYDRYL OXIDASE 1 (ATQSOX1); FUNCTIONS IN: thiol oxidase activity, protein binding, zinc ion binding; INVOLVED IN: response to cation stress; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Zinc finger, RING-type (InterPro:IPR001841), Erv1/Alr (InterPro:IPR006863), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: AtQSOX2 (quiescin-sulfhydryl oxidase 2); thiol oxidase (TAIR:AT2G01270.1); Has 1824 Blast hits to 1505 proteins in 220 species: Archae - 2; Bacteria - 17; Metazoa - 1093; Fungi - 210; Plants - 281; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).  protein_id AT1G15020.2p  transcript_id AT1G15020.2  protein_id AT1G15020.2p  transcript_id AT1G15020.2  
At1g15030	chr1:005177895	0.0	W/5177895-5178095,5178177-5178400,5178512-5178761,5179208-5179293,5179379-5179470,5179624-5179853	AT1G15030.1 CDS  gene_syn T15D22.8, T15D22_8  function Encodes a Cysteine-rich peptide (CRP) family protein  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01260.1); Has 150 Blast hits to 149 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15030.1p  transcript_id AT1G15030.1  protein_id AT1G15030.1p  transcript_id AT1G15030.1  
At1g15040	chr1:005180038	0.0	C/5180038-5180304,5180395-5181315	AT1G15040.1 CDS  gene_syn T15D22.12, T15D22_12  go_process glutamine metabolic process|GO:0006541||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product glutamine amidotransferase-related  note glutamine amidotransferase-related; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT5G38200.1); Has 2200 Blast hits to 2199 proteins in 608 species: Archae - 19; Bacteria - 1490; Metazoa - 2; Fungi - 6; Plants - 26; Viruses - 0; Other Eukaryotes - 657 (source: NCBI BLink).  protein_id AT1G15040.1p  transcript_id AT1G15040.1  protein_id AT1G15040.1p  transcript_id AT1G15040.1  
At1g15040	chr1:005180314	0.0	C/5180314-5181315	AT1G15040.2 CDS  gene_syn T15D22.12, T15D22_12  go_process glutamine metabolic process|GO:0006541||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product glutamine amidotransferase-related  note glutamine amidotransferase-related; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT1G66860.1); Has 2198 Blast hits to 2197 proteins in 608 species: Archae - 19; Bacteria - 1488; Metazoa - 2; Fungi - 6; Plants - 26; Viruses - 0; Other Eukaryotes - 657 (source: NCBI BLink).  protein_id AT1G15040.2p  transcript_id AT1G15040.2  protein_id AT1G15040.2p  transcript_id AT1G15040.2  
At1g15045	chr1:005181857	0.0	W/5181857-5181964	AT1G15045.1 CDS  gene_syn T15D22.9, T15D22_9  function hypothetical protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G15045.1p  transcript_id AT1G15045.1  protein_id AT1G15045.1p  transcript_id AT1G15045.1  
At1g15050	chr1:005182256	0.0	C/5182256-5182322,5182396-5182504,5182605-5182745,5182854-5183007,5183157-5183243	AT1G15050.1 CDS  gene_syn IAA34, INDOLE-3-ACETIC ACID INDUCIBLE 34, T15D22.10, T15D22_10  gene IAA34  function Belongs to auxin inducible gene family.  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA34 (INDOLE-3-ACETIC ACID INDUCIBLE 34); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 34 (IAA34); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32); transcription factor (TAIR:AT2G01200.2); Has 857 Blast hits to 857 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 857; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15050.1p  transcript_id AT1G15050.1  protein_id AT1G15050.1p  transcript_id AT1G15050.1  
At1g15060	chr1:005184053	0.0	C/5184053-5184112,5184229-5184329,5184591-5184761,5184963-5185137,5185241-5185341,5185419-5185521,5185609-5186283,5186415-5186492,5186584-5186856	AT1G15060.1 CDS  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070 (InterPro:IPR016969); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73750.1); Has 120 Blast hits to 104 proteins in 29 species: Archae - 0; Bacteria - 61; Metazoa - 1; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G15060.1p  transcript_id AT1G15060.1  protein_id AT1G15060.1p  transcript_id AT1G15060.1  
At1g15080	chr1:005188080	0.0	W/5188080-5188295,5188384-5188471,5188560-5188669,5188748-5188841,5188923-5189111,5189205-5189264,5189361-5189476	AT1G15080.1 CDS  gene_syn ATLPP2, ATPAP2, F9L1.2, F9L1_2, LIPID PHOSPHATE PHOSPHATASE 2, LPP2, PHOSPHATIDIC ACID PHOSPHATASE 2  gene LPP2  function Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component integral to plasma membrane|GO:0005887|15960620|ISS  go_process abscisic acid mediated signaling|GO:0009738|15960620|IGI  go_function acid phosphatase activity|GO:0003993|16244908|ISS  go_function phosphatidate phosphatase activity|GO:0008195|11278556|IDA  go_function phosphatidate phosphatase activity|GO:0008195||ISS  product LPP2 (LIPID PHOSPHATE PHOSPHATASE 2); acid phosphatase/ phosphatidate phosphatase  note LIPID PHOSPHATE PHOSPHATASE 2 (LPP2); FUNCTIONS IN: phosphatidate phosphatase activity, acid phosphatase activity; INVOLVED IN: abscisic acid mediated signaling; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase (TAIR:AT3G02600.5); Has 1529 Blast hits to 1526 proteins in 228 species: Archae - 8; Bacteria - 150; Metazoa - 807; Fungi - 258; Plants - 117; Viruses - 2; Other Eukaryotes - 187 (source: NCBI BLink).  protein_id AT1G15080.1p  transcript_id AT1G15080.1  protein_id AT1G15080.1p  transcript_id AT1G15080.1  
At1g15090	chr1:005189687	0.0	C/5189687-5189760	AT1G15090.1 tRNA  gene_syn 51439.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT1G15090.1  
At1g15100	chr1:005193703	0.0	C/5193703-5194170	AT1G15100.1 CDS  gene_syn RHA2A, RING-H2 FINGER PROTEIN RHA2A  gene RHA2A  function Encodes a putative RING-H2 finger protein RHA2a.  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|19286935|IMP  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|19286935|IMP  go_process regulation of response to osmotic stress|GO:0047484|19286935|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|19286935|IDA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product RHA2A; protein binding / ubiquitin-protein ligase/ zinc ion binding  note RHA2A; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding; INVOLVED IN: response to salt stress, positive regulation of abscisic acid mediated signaling, regulation of response to osmotic stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: RHA2B (RING-H2 FINGER PROTEIN 2B); protein binding / ubiquitin-protein ligase/ zinc ion binding (TAIR:AT2G01150.1); Has 5834 Blast hits to 5817 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 1922; Fungi - 442; Plants - 2489; Viruses - 11; Other Eukaryotes - 970 (source: NCBI BLink).  protein_id AT1G15100.1p  transcript_id AT1G15100.1  protein_id AT1G15100.1p  transcript_id AT1G15100.1  
At1g15110	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201681,5201781-5201908	AT1G15110.1 CDS  gene_syn F9L1.4, F9L1_4  go_process phosphatidylserine biosynthetic process|GO:0006659||IEA  go_component cellular_component|GO:0005575||ND  go_process phosphatidylserine biosynthetic process|GO:0006659||ISS  go_function CDP-diacylglycerol-serine O-phosphatidyltransferase activity|GO:0003882||ISS  product phosphatidyl serine synthase family protein  note phosphatidyl serine synthase family protein; FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity; INVOLVED IN: phosphatidylserine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277); Has 247 Blast hits to 246 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 4; Plants - 30; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G15110.1p  transcript_id AT1G15110.1  protein_id AT1G15110.1p  transcript_id AT1G15110.1  
At1g15110	chr1:005199594	0.0	W/5199594-5199754,5199841-5199906,5200005-5200064,5200178-5200268,5200382-5200436,5200523-5200602,5200688-5200804,5200908-5200992,5201081-5201172,5201254-5201507,5201593-5201685,5201781-5201988	AT1G15110.2 CDS  gene_syn F9L1.4, F9L1_4  go_process phosphatidylserine biosynthetic process|GO:0006659||IEA  go_component cellular_component|GO:0005575||ND  go_process phosphatidylserine biosynthetic process|GO:0006659||ISS  go_function CDP-diacylglycerol-serine O-phosphatidyltransferase activity|GO:0003882||ISS  product phosphatidyl serine synthase family protein  note phosphatidyl serine synthase family protein; FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity; INVOLVED IN: phosphatidylserine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277); Has 247 Blast hits to 246 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 4; Plants - 30; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G15110.2p  transcript_id AT1G15110.2  protein_id AT1G15110.2p  transcript_id AT1G15110.2  
At1g15120	chr1:005202648	0.0	W/5202648-5202772,5202871-5202920,5203065-5203092,5203484-5203568,5203683-5203772,5203828-5203950	AT1G15120.2 CDS  gene_syn F9L1.5, F9L1_5  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA  go_component mitochondrial respiratory chain complex III|GO:0005750||ISS  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative  note ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase hinge (InterPro:IPR003422); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative (TAIR:AT2G01090.1).  protein_id AT1G15120.2p  transcript_id AT1G15120.2  protein_id AT1G15120.2p  transcript_id AT1G15120.2  
At1g15120	chr1:005203091	0.0	W/5203091-5203092,5203484-5203568,5203683-5203772,5203865-5203897	AT1G15120.1 CDS  gene_syn F9L1.5, F9L1_5  go_component mitochondrion|GO:0005739|15276431|IDA  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||IEA  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||IEA  go_component mitochondrial respiratory chain complex III|GO:0005750||ISS  go_process mitochondrial electron transport, ubiquinol to cytochrome c|GO:0006122||ISS  go_function ubiquinol-cytochrome-c reductase activity|GO:0008121||ISS  product ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative  note ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative; FUNCTIONS IN: ubiquinol-cytochrome-c reductase activity; INVOLVED IN: mitochondrial electron transport, ubiquinol to cytochrome c; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquinol-cytochrome C reductase hinge (InterPro:IPR003422); BEST Arabidopsis thaliana protein match is: ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative (TAIR:AT2G01090.1); Has 294 Blast hits to 294 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 34; Plants - 50; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).  protein_id AT1G15120.1p  transcript_id AT1G15120.1  protein_id AT1G15120.1p  transcript_id AT1G15120.1  
At1g15125	chr1:005204625	0.0	W/5204625-5204675,5204758-5205049,5205126-5205490,5205565-5205912	AT1G15125.1 CDS  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product S-adenosylmethionine-dependent methyltransferase/ methyltransferase  note S-adenosylmethionine-dependent methyltransferase/ methyltransferase; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine:carboxyl methyltransferase family protein (TAIR:AT1G68040.1); Has 579 Blast hits to 569 proteins in 97 species: Archae - 0; Bacteria - 48; Metazoa - 12; Fungi - 3; Plants - 445; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).  protein_id AT1G15125.1p  transcript_id AT1G15125.1  protein_id AT1G15125.1p  transcript_id AT1G15125.1  
At1g15130	chr1:005206217	0.0	C/5206217-5206687,5206851-5206954,5207144-5207192,5207379-5207519,5207618-5207686,5207781-5207870,5208084-5209034,5209183-5209848	AT1G15130.1 CDS  gene_syn F9L1.7, F9L1_7  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); Has 24106 Blast hits to 13529 proteins in 779 species: Archae - 27; Bacteria - 1802; Metazoa - 9356; Fungi - 3772; Plants - 5606; Viruses - 598; Other Eukaryotes - 2945 (source: NCBI BLink).  protein_id AT1G15130.1p  transcript_id AT1G15130.1  protein_id AT1G15130.1p  transcript_id AT1G15130.1  
At1g15140	chr1:005210403	0.0	C/5210403-5210465,5210549-5210629,5210714-5210809,5210972-5211071,5211590-5212137	AT1G15140.1 CDS  gene_syn F9L1.8, F9L1_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase NAD-binding domain-containing protein  note oxidoreductase NAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Phenol hydroxylase reductase (InterPro:IPR001221); BEST Arabidopsis thaliana protein match is: FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding (TAIR:AT1G20020.3); Has 4066 Blast hits to 4066 proteins in 971 species: Archae - 52; Bacteria - 3026; Metazoa - 11; Fungi - 136; Plants - 246; Viruses - 0; Other Eukaryotes - 595 (source: NCBI BLink).  protein_id AT1G15140.1p  transcript_id AT1G15140.1  protein_id AT1G15140.1p  transcript_id AT1G15140.1  
At1g15140	chr1:005210642	0.0	C/5210642-5210809,5210972-5211071,5211590-5212137	AT1G15140.2 CDS  gene_syn F9L1.8, F9L1_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase NAD-binding domain-containing protein  note oxidoreductase NAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Phenol hydroxylase reductase (InterPro:IPR001221); BEST Arabidopsis thaliana protein match is: FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding (TAIR:AT1G20020.3); Has 2852 Blast hits to 2852 proteins in 826 species: Archae - 44; Bacteria - 2172; Metazoa - 4; Fungi - 65; Plants - 165; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT1G15140.2p  transcript_id AT1G15140.2  protein_id AT1G15140.2p  transcript_id AT1G15140.2  
At1g15140	chr1:005210642	0.0	C/5210642-5210809,5210972-5211071,5211590-5212137	AT1G15140.3 CDS  gene_syn F9L1.8, F9L1_8  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase NAD-binding domain-containing protein  note oxidoreductase NAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Phenol hydroxylase reductase (InterPro:IPR001221); BEST Arabidopsis thaliana protein match is: FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding (TAIR:AT1G20020.3); Has 2852 Blast hits to 2852 proteins in 826 species: Archae - 44; Bacteria - 2172; Metazoa - 4; Fungi - 65; Plants - 165; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT1G15140.3p  transcript_id AT1G15140.3  protein_id AT1G15140.3p  transcript_id AT1G15140.3  
At1g15150	chr1:005212674	0.0	W/5212674-5212931,5213047-5213591,5213675-5213761,5213841-5213897,5213989-5214227,5214357-5214562,5214652-5214723	AT1G15150.1 CDS  gene_syn F9L1.9, F9L1_9  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15160.1); Has 4539 Blast hits to 4497 proteins in 1011 species: Archae - 61; Bacteria - 2722; Metazoa - 126; Fungi - 210; Plants - 687; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).  protein_id AT1G15150.1p  transcript_id AT1G15150.1  protein_id AT1G15150.1p  transcript_id AT1G15150.1  
At1g15160	chr1:005215475	0.0	W/5215475-5215732,5215848-5216392,5216472-5216558,5216638-5216694,5216798-5217036,5217170-5217375,5217474-5217545	AT1G15160.1 CDS  gene_syn F9L1.10, F9L1_10  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15150.1); Has 4184 Blast hits to 4133 proteins in 986 species: Archae - 41; Bacteria - 2405; Metazoa - 126; Fungi - 210; Plants - 693; Viruses - 0; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT1G15160.1p  transcript_id AT1G15160.1  protein_id AT1G15160.1p  transcript_id AT1G15160.1  
At1g15165	chr1:005217719	0.0	C/5217719-5217972,5218097-5218212,5218292-5218310,5218532-5218627,5219069-5219150,5219360-5219426,5219552-5219704,5219796-5219896	AT1G15165.1 CDS  go_component ubiquitin ligase complex|GO:0000151||IEA  go_component endomembrane system|GO:0012505||IEA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  product U-box domain-containing protein  note U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: endomembrane system, ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing family protein (TAIR:AT1G24330.1); Has 221 Blast hits to 209 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G15165.1p  transcript_id AT1G15165.1  protein_id AT1G15165.1p  transcript_id AT1G15165.1  
At1g15170	chr1:005220690	0.0	W/5220690-5220956,5221043-5221587,5221659-5221745,5221827-5221883,5221996-5222234,5222411-5222616,5222712-5222756	AT1G15170.1 CDS  gene_syn F9L1.11, F9L1_11  go_component chloroplast|GO:0009507|18431481|IDA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15180.1); Has 4882 Blast hits to 4835 proteins in 1070 species: Archae - 55; Bacteria - 2976; Metazoa - 126; Fungi - 208; Plants - 690; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink).  protein_id AT1G15170.1p  transcript_id AT1G15170.1  protein_id AT1G15170.1p  transcript_id AT1G15170.1  
At1g15175	chr1:005222913	0.0	C/5222913-5224121	AT1G15175.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G15170  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G15175.1  
At1g15180	chr1:005224452	0.0	W/5224452-5224721,5224826-5225370,5225448-5225534,5225614-5225670,5225766-5226004,5226186-5226391,5226487-5226531	AT1G15180.1 CDS  gene_syn F9L1.12, F9L1_12  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1); Has 4248 Blast hits to 4206 proteins in 991 species: Archae - 55; Bacteria - 2461; Metazoa - 126; Fungi - 208; Plants - 689; Viruses - 0; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT1G15180.1p  transcript_id AT1G15180.1  protein_id AT1G15180.1p  transcript_id AT1G15180.1  
At1g15180	chr1:005224916	0.0	W/5224916-5225370,5225448-5225534,5225614-5225670,5225766-5226391,5226487-5226494	AT1G15180.2 CDS  gene_syn F9L1.12, F9L1_12  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1); Has 1905 Blast hits to 1893 proteins in 460 species: Archae - 6; Bacteria - 663; Metazoa - 115; Fungi - 206; Plants - 648; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G15180.2p  transcript_id AT1G15180.2  protein_id AT1G15180.2p  transcript_id AT1G15180.2  
At1g15190	chr1:005227275	0.0	W/5227275-5228021	AT1G15190.1 CDS  gene_syn F9L1.13, F9L1_13  go_component endomembrane system|GO:0012505||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); Has 49 Blast hits to 39 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15190.1p  transcript_id AT1G15190.1  protein_id AT1G15190.1p  transcript_id AT1G15190.1  
At1g15200	chr1:005228477	0.0	C/5228477-5228881,5228967-5229051,5229346-5229446,5229546-5229629,5229979-5230050,5230172-5230288,5230374-5230541,5230623-5230688,5230765-5230860,5230940-5231017	AT1G15200.1 CDS  gene_syn F9L1.14, F9L1_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product protein-protein interaction regulator family protein  note protein-protein interaction regulator family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pinin/SDK/memA protein (InterPro:IPR006786); Has 5080 Blast hits to 3694 proteins in 299 species: Archae - 6; Bacteria - 218; Metazoa - 2325; Fungi - 443; Plants - 161; Viruses - 52; Other Eukaryotes - 1875 (source: NCBI BLink).  protein_id AT1G15200.1p  transcript_id AT1G15200.1  protein_id AT1G15200.1p  transcript_id AT1G15200.1  
At1g15210	chr1:005231552	0.0	C/5231552-5232479,5232568-5233409,5233493-5233599,5233690-5233761,5233834-5233987,5234080-5234949,5235039-5235431,5235527-5235657,5235742-5236573	AT1G15210.1 CDS  gene_syn ATPDR7, F9L1.15, F9L1_15, PDR7, PLEIOTROPIC DRUG RESISTANCE 7  gene PDR7  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process multidrug transport|GO:0006855|16506311|ISS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR7 (PLEIOTROPIC DRUG RESISTANCE 7); ATPase, coupled to transmembrane movement of substances  note PLEIOTROPIC DRUG RESISTANCE 7 (PDR7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: multidrug transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PEN3 (PENETRATION 3); ATPase, coupled to transmembrane movement of substances / cadmium ion transmembrane transporter (TAIR:AT1G59870.1); Has 219007 Blast hits to 166393 proteins in 2528 species: Archae - 4373; Bacteria - 156456; Metazoa - 8068; Fungi - 4637; Plants - 3146; Viruses - 4; Other Eukaryotes - 42323 (source: NCBI BLink).  protein_id AT1G15210.1p  transcript_id AT1G15210.1  protein_id AT1G15210.1p  transcript_id AT1G15210.1  
At1g15215	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239650,5239715-5239741	AT1G15215.3 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding / transcription factor (TAIR:AT3G18380.2); Has 41 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15215.3p  transcript_id AT1G15215.3  protein_id AT1G15215.3p  transcript_id AT1G15215.3  
At1g15215	chr1:005238096	0.0	W/5238096-5238149,5238229-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239650,5239726-5239770	AT1G15215.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding / transcription factor (TAIR:AT3G18380.1); Has 41 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15215.2p  transcript_id AT1G15215.2  protein_id AT1G15215.2p  transcript_id AT1G15215.2  
At1g15215	chr1:005238238	0.0	W/5238238-5238314,5238474-5238519,5238609-5238777,5238855-5238915,5239182-5239233,5239295-5239438,5239531-5239650,5239715-5239741	AT1G15215.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding / transcription factor (TAIR:AT3G18380.2); Has 41 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15215.1p  transcript_id AT1G15215.1  protein_id AT1G15215.1p  transcript_id AT1G15215.1  
At1g15220	chr1:005240471	0.0	C/5240471-5240674,5240755-5240886,5240974-5241117	AT1G15220.1 CDS  gene_syn ATCCMH, CCMH, F9L1.17, F9L1_17  gene CCMH  function Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane|GO:0005743|16236729|IDA  go_component protein complex|GO:0043234|16236729|IDA  go_process embryonic development|GO:0009790|16236729|IMP  go_process cytochrome complex assembly|GO:0017004||ISS  go_function oxidoreductase activity|GO:0016491|16236729|IDA  product CCMH; oxidoreductase  note CCMH; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: embryonic development, cytochrome complex assembly; LOCATED IN: mitochondrion, mitochondrial inner membrane, protein complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome C biogenesis protein CcmH (InterPro:IPR005616); Has 2520 Blast hits to 2520 proteins in 456 species: Archae - 0; Bacteria - 1225; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink).  protein_id AT1G15220.1p  transcript_id AT1G15220.1  protein_id AT1G15220.1p  transcript_id AT1G15220.1  
At1g15220	chr1:005240471	0.0	C/5240471-5240674,5240755-5240886,5240974-5241117	AT1G15220.2 CDS  gene_syn ATCCMH, CCMH, F9L1.17, F9L1_17  gene CCMH  function Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrial inner membrane|GO:0005743|16236729|IDA  go_component protein complex|GO:0043234|16236729|IDA  go_process embryonic development|GO:0009790|16236729|IMP  go_process cytochrome complex assembly|GO:0017004||ISS  go_function oxidoreductase activity|GO:0016491|16236729|IDA  product CCMH; oxidoreductase  note CCMH; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: embryonic development, cytochrome complex assembly; LOCATED IN: mitochondrion, mitochondrial inner membrane, protein complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome C biogenesis protein CcmH (InterPro:IPR005616); Has 2520 Blast hits to 2520 proteins in 456 species: Archae - 0; Bacteria - 1225; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 1278 (source: NCBI BLink).  protein_id AT1G15220.2p  transcript_id AT1G15220.2  protein_id AT1G15220.2p  transcript_id AT1G15220.2  
At1g15230	chr1:005242729	0.0	C/5242729-5243196	AT1G15230.1 CDS  gene_syn F9L1.18, F9L1_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15230.1p  transcript_id AT1G15230.1  protein_id AT1G15230.1p  transcript_id AT1G15230.1  
At1g15240	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246468,5246929-5246997,5247073-5247118,5247198-5247487,5247584-5247663,5247765-5247900,5248075-5248201,5248302-5248384,5248467-5248604	AT1G15240.2 CDS  gene_syn F9L1.19, F9L1_19  go_process signal transduction|GO:0007165|15358268|ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phox (PX) domain-containing protein  note phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling cascade; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: phox (PX) domain-containing protein (TAIR:AT2G15900.1).  protein_id AT1G15240.2p  transcript_id AT1G15240.2  protein_id AT1G15240.2p  transcript_id AT1G15240.2  
At1g15240	chr1:005243799	0.0	W/5243799-5243907,5244051-5244447,5244534-5244711,5244813-5244952,5245027-5246050,5246148-5246248,5246324-5246495	AT1G15240.1 CDS  gene_syn F9L1.19, F9L1_19  go_process signal transduction|GO:0007165|15358268|ISS  go_process intracellular signaling cascade|GO:0007242||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phox (PX) domain-containing protein  note phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling cascade; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: phox (PX) domain-containing protein (TAIR:AT2G15900.1); Has 454 Blast hits to 435 proteins in 121 species: Archae - 0; Bacteria - 6; Metazoa - 243; Fungi - 85; Plants - 73; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G15240.1p  transcript_id AT1G15240.1  protein_id AT1G15240.1p  transcript_id AT1G15240.1  
At1g15250	chr1:005248825	0.0	C/5248825-5248871,5248961-5249062,5249169-5249304,5249379-5249381	AT1G15250.1 CDS  gene_syn F9L1.46, F9L1_46  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L37 (RPL37A)  note 60S ribosomal protein L37 (RPL37A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding (InterPro:IPR011332), Ribosomal protein L37ae/L37e, core (InterPro:IPR011331), Ribosomal protein L37e (InterPro:IPR001569); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L37 (RPL37C) (TAIR:AT3G16080.1); Has 707 Blast hits to 707 proteins in 247 species: Archae - 202; Bacteria - 0; Metazoa - 220; Fungi - 103; Plants - 72; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G15250.1p  transcript_id AT1G15250.1  protein_id AT1G15250.1p  transcript_id AT1G15250.1  
At1g15260	chr1:005249834	0.0	W/5249834-5250370	AT1G15260.1 CDS  gene_syn F9L1.20, F9L1_20  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15260.1p  transcript_id AT1G15260.1  protein_id AT1G15260.1p  transcript_id AT1G15260.1  
At1g15270	chr1:005250833	0.0	C/5250833-5250913,5251450-5251491,5251845-5251900,5252005-5252020	AT1G15270.1 CDS  gene_syn F9L1.21, F9L1_21  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation machinery associated TMA7 (InterPro:IPR015157); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16040.1); Has 263 Blast hits to 263 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 48; Plants - 41; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G15270.1p  transcript_id AT1G15270.1  protein_id AT1G15270.1p  transcript_id AT1G15270.1  
At1g15280	chr1:005252538	0.0	W/5252538-5252935,5253288-5253387,5253546-5253751,5253831-5254525,5254734-5254836,5255182-5255292,5255470-5255525,5255840-5255900,5256187-5256214	AT1G15280.2 CDS  gene_syn F9L1.22, F9L1_22  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80000.2); Has 3928 Blast hits to 2073 proteins in 245 species: Archae - 0; Bacteria - 154; Metazoa - 1298; Fungi - 267; Plants - 178; Viruses - 66; Other Eukaryotes - 1965 (source: NCBI BLink).  protein_id AT1G15280.2p  transcript_id AT1G15280.2  protein_id AT1G15280.2p  transcript_id AT1G15280.2  
At1g15280	chr1:005252538	0.0	W/5252538-5252935,5253288-5253387,5253549-5253751,5253831-5254525,5254734-5254836,5255182-5255292,5255470-5255525,5255840-5255900,5256187-5256214	AT1G15280.1 CDS  gene_syn F9L1.22, F9L1_22  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80000.2); Has 3934 Blast hits to 2063 proteins in 239 species: Archae - 0; Bacteria - 148; Metazoa - 1302; Fungi - 277; Plants - 172; Viruses - 70; Other Eukaryotes - 1965 (source: NCBI BLink).  protein_id AT1G15280.1p  transcript_id AT1G15280.1  protein_id AT1G15280.1p  transcript_id AT1G15280.1  
At1g15290	chr1:005257327	0.0	C/5257327-5258784,5259090-5259171,5259253-5259365,5259498-5259629,5259707-5259890,5260077-5260210,5260358-5260462,5260549-5260650,5260786-5260878,5260949-5261266,5261435-5261536,5261623-5261685,5261815-5262301,5262580-5262734,5262945-5263466,5263555-5263596,5263688-5263884,5263968-5264198,5264420-5264492,5264581-5264814	AT1G15290.1 CDS  gene_syn F9L1.23, F9L1_23  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G28080.1); Has 8993 Blast hits to 2614 proteins in 265 species: Archae - 85; Bacteria - 2044; Metazoa - 4793; Fungi - 935; Plants - 100; Viruses - 4; Other Eukaryotes - 1032 (source: NCBI BLink).  protein_id AT1G15290.1p  transcript_id AT1G15290.1  protein_id AT1G15290.1p  transcript_id AT1G15290.1  
At1g15300	chr1:005265726	0.0	C/5265726-5268602	AT1G15300.1 mRNA_TE_gene  pseudo  gene_syn F9L1.24, F9L1_24  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.1e-59 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)  
At1g15310	chr1:005269173	0.0	C/5269173-5269456,5269534-5269648,5269723-5269877,5269993-5270093,5270206-5270354,5270436-5270586,5271282-5271435,5271532-5271631,5271717-5271947	AT1G15310.1 CDS  gene_syn ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT, ATHSRP54A, F9L1.25, F9L1_25, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT, SRP54-1  gene ATHSRP54A  function 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins  go_process SRP-dependent cotranslational protein targeting to membrane|GO:0006614||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function GTP binding|GO:0005525||IEA  go_function 7S RNA binding|GO:0008312||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cytoplasm|GO:0005737|7824644|ISS  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786|8292790|ISS  go_component signal recognition particle, endoplasmic reticulum targeting|GO:0005786||ISS  go_process SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition|GO:0006617||ISS  go_function mRNA binding|GO:0003729||ISS  go_function GTP binding|GO:0005525||ISS  go_function 7S RNA binding|GO:0008312||ISS  product ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / nucleoside-triphosphatase/ nucleotide binding  note ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT (ATHSRP54A); FUNCTIONS IN: 7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, endoplasmic reticulum targeting, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, M-domain (InterPro:IPR004125), Signal recognition particle, SRP54 subunit (InterPro:IPR006325), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (TAIR:AT1G48900.1); Has 12037 Blast hits to 12032 proteins in 1585 species: Archae - 312; Bacteria - 5649; Metazoa - 261; Fungi - 192; Plants - 147; Viruses - 0; Other Eukaryotes - 5476 (source: NCBI BLink).  protein_id AT1G15310.1p  transcript_id AT1G15310.1  protein_id AT1G15310.1p  transcript_id AT1G15310.1  
At1g15320	chr1:005272468	0.0	C/5272468-5272645,5272807-5273335,5273483-5273619,5274004-5274029	AT1G15320.2 CDS  gene_syn F9L1.26, F9L1_26  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15320.2p  transcript_id AT1G15320.2  protein_id AT1G15320.2p  transcript_id AT1G15320.2  
At1g15320	chr1:005272468	0.0	C/5272468-5272645,5272807-5273335,5273483-5273699	AT1G15320.1 CDS  gene_syn F9L1.26, F9L1_26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15320.1p  transcript_id AT1G15320.1  protein_id AT1G15320.1p  transcript_id AT1G15320.1  
At1g15330	chr1:005274368	0.0	W/5274368-5275135,5275209-5275499	AT1G15330.1 CDS  gene_syn F9L1.27, F9L1_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CBS domain-containing protein  note CBS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein (TAIR:AT1G80090.1); Has 364 Blast hits to 364 proteins in 90 species: Archae - 2; Bacteria - 4; Metazoa - 214; Fungi - 57; Plants - 56; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G15330.1p  transcript_id AT1G15330.1  protein_id AT1G15330.1p  transcript_id AT1G15330.1  
At1g15340	chr1:005275895	0.0	C/5275895-5276986,5277412-5277474	AT1G15340.1 CDS  gene_syn F9L1.28, F9L1_28, MBD10  gene MBD10  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD10; DNA binding / methyl-CpG binding  note MBD10; FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: MBD11; DNA binding / methyl-CpG binding (TAIR:AT3G15790.1); Has 115337 Blast hits to 56234 proteins in 2072 species: Archae - 428; Bacteria - 16429; Metazoa - 47218; Fungi - 11556; Plants - 4270; Viruses - 722; Other Eukaryotes - 34714 (source: NCBI BLink).  protein_id AT1G15340.1p  transcript_id AT1G15340.1  protein_id AT1G15340.1p  transcript_id AT1G15340.1  
At1g15350	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279056	AT1G15350.3 CDS  gene_syn F9L1.29, F9L1_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15770.2); Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15350.3p  transcript_id AT1G15350.3  protein_id AT1G15350.3p  transcript_id AT1G15350.3  
At1g15350	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279189,5279482-5279486	AT1G15350.1 CDS  gene_syn F9L1.29, F9L1_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.1); Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15350.1p  transcript_id AT1G15350.1  protein_id AT1G15350.1p  transcript_id AT1G15350.1  
At1g15350	chr1:005278481	0.0	C/5278481-5278534,5278606-5278675,5278764-5278854,5278945-5279189,5279482-5279486	AT1G15350.2 CDS  gene_syn F9L1.29, F9L1_29  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.1); Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15350.2p  transcript_id AT1G15350.2  protein_id AT1G15350.2p  transcript_id AT1G15350.2  
At1g15360	chr1:005283609	0.0	W/5283609-5283688,5283987-5284506	AT1G15360.1 CDS  gene_syn F9L1.31, F9L1_31, SHINE 1, SHN1, WAX INDUCER 1, WIN1  gene SHN1  function Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to water deprivation|GO:0009414|15319479|IMP  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_process cutin biosynthetic process|GO:0010143|17449808|IMP  go_process wax metabolic process|GO:0010166|15319479|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  go_function sequence-specific DNA binding|GO:0043565|17449808|IPI  product SHN1 (SHINE 1); DNA binding / sequence-specific DNA binding / transcription factor  note SHINE 1 (SHN1); FUNCTIONS IN: transcription factor activity, sequence-specific DNA binding, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, response to water deprivation, wax metabolic process, regulation of transcription, DNA-dependent, cutin biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: SHN3 (shine3); DNA binding / transcription factor (TAIR:AT5G11190.1); Has 3859 Blast hits to 3758 proteins in 219 species: Archae - 0; Bacteria - 6; Metazoa - 22; Fungi - 21; Plants - 3773; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G15360.1p  transcript_id AT1G15360.1  protein_id AT1G15360.1p  transcript_id AT1G15360.1  
At1g15370	chr1:005287135	0.0	W/5287135-5287187,5287801-5287914,5288013-5288092,5288179-5288375	AT1G15370.1 CDS  gene_syn F9L1.32, F9L1_32  go_process transport|GO:0006810||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); Has 48 Blast hits to 48 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 39; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G15370.1p  transcript_id AT1G15370.1  protein_id AT1G15370.1p  transcript_id AT1G15370.1  
At1g15380	chr1:005290955	0.0	W/5290955-5291109,5291215-5291320,5292024-5292287	AT1G15380.1 CDS  gene_syn F9L1.33, F9L1_33  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT1G80160.1); Has 483 Blast hits to 483 proteins in 168 species: Archae - 1; Bacteria - 286; Metazoa - 3; Fungi - 2; Plants - 125; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G15380.1p  transcript_id AT1G15380.1  protein_id AT1G15380.1p  transcript_id AT1G15380.1  
At1g15380	chr1:005290955	0.0	W/5290955-5291109,5291215-5291320,5292024-5292287	AT1G15380.2 CDS  gene_syn F9L1.33, F9L1_33  go_component cellular_component|GO:0005575||ND  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function lactoylglutathione lyase activity|GO:0004462||ISS  product lactoylglutathione lyase family protein / glyoxalase I family protein  note lactoylglutathione lyase family protein / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: lactoylglutathione lyase family protein / glyoxalase I family protein (TAIR:AT1G80160.1); Has 483 Blast hits to 483 proteins in 168 species: Archae - 1; Bacteria - 286; Metazoa - 3; Fungi - 2; Plants - 125; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G15380.2p  transcript_id AT1G15380.2  protein_id AT1G15380.2p  transcript_id AT1G15380.2  
At1g15385	chr1:005292976	0.0	C/5292976-5293197	AT1G15385.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15385.1p  transcript_id AT1G15385.1  protein_id AT1G15385.1p  transcript_id AT1G15385.1  
At1g15390	chr1:005294653	0.0	W/5294653-5295063,5295144-5295233,5295317-5295625	AT1G15390.1 CDS  gene_syn PDF1A, PEPTIDE DEFORMYLASE 1A  gene PDF1A  function encodes a peptide deformylase-like protein. Removes N-formyl groups, a prerequisite for the action of methionine aminopeptidase during protein synthesis. Targeted to mitochondria. Requires Zn for catalysis.  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component mitochondrion|GO:0005739|11060042|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process translation|GO:0006412||ISS  go_process co-translational protein modification|GO:0043686|11733990|IDA  go_function peptide deformylase activity|GO:0042586|11733990|IDA  go_function peptide deformylase activity|GO:0042586||ISS  product PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase  note PEPTIDE DEFORMYLASE 1A (PDF1A); FUNCTIONS IN: peptide deformylase activity; INVOLVED IN: translation, co-translational protein modification; LOCATED IN: mitochondrion, chloroplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formylmethionine deformylase (InterPro:IPR000181); BEST Arabidopsis thaliana protein match is: PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase (TAIR:AT5G14660.2); Has 7111 Blast hits to 7111 proteins in 1452 species: Archae - 4; Bacteria - 4242; Metazoa - 95; Fungi - 0; Plants - 62; Viruses - 2; Other Eukaryotes - 2706 (source: NCBI BLink).  protein_id AT1G15390.1p  transcript_id AT1G15390.1  protein_id AT1G15390.1p  transcript_id AT1G15390.1  
At1g15400	chr1:005296019	0.0	C/5296019-5296046,5296406-5296824	AT1G15400.3 CDS  gene_syn F9L1.35, F9L1_35  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 50 Blast hits to 50 proteins in 11 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G15400.3p  transcript_id AT1G15400.3  protein_id AT1G15400.3p  transcript_id AT1G15400.3  
At1g15400	chr1:005296033	0.0	C/5296033-5296051,5296406-5296824	AT1G15400.1 CDS  gene_syn F9L1.35, F9L1_35  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 48 Blast hits to 48 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G15400.1p  transcript_id AT1G15400.1  protein_id AT1G15400.1p  transcript_id AT1G15400.1  
At1g15400	chr1:005296402	0.0	C/5296402-5296824	AT1G15400.2 CDS  gene_syn F9L1.35, F9L1_35  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 48 Blast hits to 48 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G15400.2p  transcript_id AT1G15400.2  protein_id AT1G15400.2p  transcript_id AT1G15400.2  
At1g15405	chr1:005297875	0.0	C/5297875-5298166	AT1G15405.1 ncRNA  function Unknown gene  product other RNA  transcript_id AT1G15405.1  
At1g15410	chr1:005299577	0.0	W/5299577-5300293,5300406-5300681	AT1G15410.1 CDS  gene_syn F9L1.36, F9L1_36  go_component chloroplast|GO:0009507|18431481|IDA  go_process amino acid metabolic process|GO:0006520||IEA  go_process metabolic process|GO:0008152||IEA  go_function racemase and epimerase activity, acting on amino acids and derivatives|GO:0016855||IEA  go_process metabolic process|GO:0008152||ISS  go_function racemase and epimerase activity, acting on amino acids and derivatives|GO:0016855||ISS  product aspartate-glutamate racemase family  note aspartate-glutamate racemase family; FUNCTIONS IN: racemase and epimerase activity, acting on amino acids and derivatives; INVOLVED IN: amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Asp/Glu/hydantoin racemase (InterPro:IPR015942), Aspartate racemase (InterPro:IPR004380), Asp/Glu racemase (InterPro:IPR001920); Has 1506 Blast hits to 1496 proteins in 349 species: Archae - 38; Bacteria - 814; Metazoa - 0; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink).  protein_id AT1G15410.1p  transcript_id AT1G15410.1  protein_id AT1G15410.1p  transcript_id AT1G15410.1  
At1g15415	chr1:005300931	0.0	C/5300931-5301104,5301189-5301242,5301350-5301412	AT1G15415.1 CDS  gene_syn F9L1.37, F9L1_37  function The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15415.1p  transcript_id AT1G15415.1  protein_id AT1G15415.1p  transcript_id AT1G15415.1  
At1g15420	chr1:005301794	0.0	C/5301794-5301979,5302152-5302214,5302334-5302445,5302526-5302608,5302689-5302936,5303059-5303157,5303251-5303296	AT1G15420.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function NUC189, C-terminal (InterPro:IPR012979); Has 698 Blast hits to 572 proteins in 149 species: Archae - 0; Bacteria - 42; Metazoa - 236; Fungi - 117; Plants - 61; Viruses - 27; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT1G15420.1p  transcript_id AT1G15420.1  protein_id AT1G15420.1p  transcript_id AT1G15420.1  
At1g15430	chr1:005305011	0.0	W/5305011-5305790	AT1G15430.1 CDS  gene_syn F9L1.39, F9L1_39  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15430.1p  transcript_id AT1G15430.1  protein_id AT1G15430.1p  transcript_id AT1G15430.1  
At1g15430	chr1:005305011	0.0	W/5305011-5305790	AT1G15430.2 CDS  gene_syn F9L1.39, F9L1_39  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15430.2p  transcript_id AT1G15430.2  protein_id AT1G15430.2p  transcript_id AT1G15430.2  
At1g15440	chr1:005306159	0.0	C/5306159-5306329,5306419-5306646,5306730-5307074,5307174-5307545,5307686-5307778,5307867-5308118,5308219-5308843,5308964-5309460	AT1G15440.2 CDS  gene_syn F9L1.40, F9L1_40  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Periodic tryptophan protein-associated region (InterPro:IPR007190), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 56231 Blast hits to 23898 proteins in 641 species: Archae - 44; Bacteria - 6257; Metazoa - 26493; Fungi - 10127; Plants - 5365; Viruses - 0; Other Eukaryotes - 7945 (source: NCBI BLink).  protein_id AT1G15440.2p  transcript_id AT1G15440.2  protein_id AT1G15440.2p  transcript_id AT1G15440.2  
At1g15440	chr1:005306159	0.0	C/5306159-5306329,5306419-5306646,5306730-5307074,5307174-5307545,5307686-5307778,5307867-5308118,5308219-5309460	AT1G15440.1 CDS  gene_syn F9L1.40, F9L1_40  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), Periodic tryptophan protein-associated region (InterPro:IPR007190), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 56570 Blast hits to 23907 proteins in 640 species: Archae - 46; Bacteria - 6391; Metazoa - 26660; Fungi - 10130; Plants - 5359; Viruses - 0; Other Eukaryotes - 7984 (source: NCBI BLink).  protein_id AT1G15440.1p  transcript_id AT1G15440.1  protein_id AT1G15440.1p  transcript_id AT1G15440.1  
At1g15450	chr1:005309647	0.0	C/5309647-5309718	AT1G15450.1 tRNA  gene_syn 51439.TRNA-TRP-1, 51691.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT1G15450.1  
At1g15460	chr1:005310196	0.0	C/5310196-5310255,5310341-5310460,5310610-5310889,5310983-5311320,5311412-5311528,5311605-5311700,5311775-5311948,5312035-5312201,5312282-5312586,5312679-5312871,5313089-5313171,5313258-5313376	AT1G15460.1 CDS  gene_syn ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, ATBOR4, BOR4, F9L1.41, F9L1_41, REQUIRES HIGH BORON 4  gene BOR4  function Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.  go_component plasma membrane|GO:0005886|18048682|IDA  go_process boron transport|GO:0046713|18048682|IMP  go_function anion exchanger activity|GO:0015380||ISS  go_function boron efflux transmembrane transporter activity|GO:0080139|18048682|IMP  product BOR4 (REQUIRES HIGH BORON 4); anion exchanger  note REQUIRES HIGH BORON 4 (BOR4); FUNCTIONS IN: boron efflux transmembrane transporter activity, anion exchanger activity; INVOLVED IN: boron transport; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: BOR5; anion exchanger (TAIR:AT1G74810.1); Has 2058 Blast hits to 1065 proteins in 140 species: Archae - 0; Bacteria - 4; Metazoa - 1697; Fungi - 207; Plants - 101; Viruses - 2; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G15460.1p  transcript_id AT1G15460.1  protein_id AT1G15460.1p  transcript_id AT1G15460.1  
At1g15470	chr1:005315838	0.0	W/5315838-5315940,5316173-5316308,5316509-5316590,5316766-5316941,5317027-5317164,5317250-5317389,5317470-5317696	AT1G15470.1 CDS  gene_syn F9L1.42, F9L1_42  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G15610.1); Has 30729 Blast hits to 16551 proteins in 545 species: Archae - 52; Bacteria - 4851; Metazoa - 13118; Fungi - 6378; Plants - 2293; Viruses - 0; Other Eukaryotes - 4037 (source: NCBI BLink).  protein_id AT1G15470.1p  transcript_id AT1G15470.1  protein_id AT1G15470.1p  transcript_id AT1G15470.1  
At1g15480	chr1:005318307	0.0	W/5318307-5318335,5318500-5319007,5319175-5320422	AT1G15480.1 CDS  gene_syn F9L1.43, F9L1_43  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT1G80270.3); Has 5035 Blast hits to 2385 proteins in 112 species: Archae - 3; Bacteria - 2; Metazoa - 147; Fungi - 55; Plants - 4692; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).  protein_id AT1G15480.1p  transcript_id AT1G15480.1  protein_id AT1G15480.1p  transcript_id AT1G15480.1  
At1g15490	chr1:005320859	0.0	C/5320859-5320981,5321076-5321276,5321348-5321551,5321634-5321762,5321846-5322562,5322653-5322960,5323158-5323422	AT1G15490.1 CDS  gene_syn F9L1.44, F9L1_44  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G80280.1); Has 4013 Blast hits to 4004 proteins in 659 species: Archae - 21; Bacteria - 2679; Metazoa - 195; Fungi - 39; Plants - 235; Viruses - 0; Other Eukaryotes - 844 (source: NCBI BLink).  protein_id AT1G15490.1p  transcript_id AT1G15490.1  protein_id AT1G15490.1p  transcript_id AT1G15490.1  
At1g15500	chr1:005326426	0.0	W/5326426-5327205,5327350-5327604,5327691-5327834,5327926-5328273,5328359-5328688	AT1G15500.1 CDS  gene_syn ATNTT2, T16N11.1, T16N11_1  gene ATNTT2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process transport|GO:0006810||IEA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component plastid|GO:0009536|16618929|IDA  go_function ATP:ADP antiporter activity|GO:0005471||ISS  product ATNTT2; ATP:ADP antiporter  note ATNTT2; FUNCTIONS IN: ATP:ADP antiporter activity; INVOLVED IN: transport; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: ADP/ATP carrier protein (InterPro:IPR004667); BEST Arabidopsis thaliana protein match is: NTT1 (NUCLEOTIDE TRANSPORTER 1); ATP:ADP antiporter (TAIR:AT1G80300.1); Has 575 Blast hits to 575 proteins in 123 species: Archae - 0; Bacteria - 355; Metazoa - 2; Fungi - 15; Plants - 62; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G15500.1p  transcript_id AT1G15500.1  protein_id AT1G15500.1p  transcript_id AT1G15500.1  
At1g15510	chr1:005329111	0.0	W/5329111-5331711	AT1G15510.1 CDS  gene_syn T16N11.2, T16N11_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DOT4 (DEFECTIVELY ORGANIZED TRIBUTARIES 4) (TAIR:AT4G18750.1); Has 17454 Blast hits to 5077 proteins in 164 species: Archae - 0; Bacteria - 2; Metazoa - 64; Fungi - 73; Plants - 16886; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).  protein_id AT1G15510.1p  transcript_id AT1G15510.1  protein_id AT1G15510.1p  transcript_id AT1G15510.1  
At1g15520	chr1:005331993	0.0	C/5331993-5332253,5332346-5332600,5332684-5332855,5332949-5333176,5333262-5333395,5333478-5333561,5333645-5333935,5334018-5334350,5334431-5334612,5334707-5334863,5334964-5335067,5335151-5335311,5335407-5335723,5335831-5336112,5336194-5336586,5336673-5336726,5336811-5336887,5336985-5337144,5337244-5337328,5337421-5337509,5337598-5337718,5337844-5338175	AT1G15520.1 CDS  gene_syn ATPDR12, PDR12, PLEIOTROPIC DRUG RESISTANCE 12, T16N11.3, T16N11_3  gene PDR12  function ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.  go_component plasma membrane|GO:0005886|15923333|IDA  go_process multidrug transport|GO:0006855|16506311|ISS  go_process response to biotic stimulus|GO:0009607|16506311|TAS  go_process response to ethylene stimulus|GO:0009723|16506311|TAS  go_process response to salicylic acid stimulus|GO:0009751|16506311|TAS  go_process response to jasmonic acid stimulus|GO:0009753|16506311|TAS  go_process response to ozone|GO:0010193|19054359|IEP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process lead ion transport|GO:0015692|15923333|IMP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PDR12 (PLEIOTROPIC DRUG RESISTANCE 12); ATPase, coupled to transmembrane movement of substances  note PLEIOTROPIC DRUG RESISTANCE 12 (PDR12); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PDR11 (PLEIOTROPIC DRUG RESISTANCE 11); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G66950.1); Has 219482 Blast hits to 161984 proteins in 2483 species: Archae - 4596; Bacteria - 156449; Metazoa - 7426; Fungi - 4235; Plants - 2879; Viruses - 2; Other Eukaryotes - 43895 (source: NCBI BLink).  protein_id AT1G15520.1p  transcript_id AT1G15520.1  protein_id AT1G15520.1p  transcript_id AT1G15520.1  
At1g15530	chr1:005339961	0.0	C/5339961-5341931	AT1G15530.1 CDS  gene_syn T16N11.4, T16N11_4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  go_function carbohydrate binding|GO:0030246||ISS  product receptor lectin kinase, putative  note receptor lectin kinase, putative; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Legume lectin, beta domain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase-related (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT4G29050.1); Has 88310 Blast hits to 87192 proteins in 3243 species: Archae - 57; Bacteria - 7746; Metazoa - 38647; Fungi - 6934; Plants - 19705; Viruses - 445; Other Eukaryotes - 14776 (source: NCBI BLink).  protein_id AT1G15530.1p  transcript_id AT1G15530.1  protein_id AT1G15530.1p  transcript_id AT1G15530.1  
At1g15540	chr1:005342587	0.0	W/5342587-5342972,5343058-5343382,5343454-5343705	AT1G15540.1 CDS  gene_syn T16N11.5, T16N11_5  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function oxidoreductase activity|GO:0016491||IEA  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G80320.1); Has 2858 Blast hits to 2815 proteins in 396 species: Archae - 0; Bacteria - 252; Metazoa - 25; Fungi - 215; Plants - 2034; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT1G15540.1p  transcript_id AT1G15540.1  protein_id AT1G15540.1p  transcript_id AT1G15540.1  
At1g15550	chr1:005344569	0.0	C/5344569-5345154,5345588-5346078	AT1G15550.1 CDS  gene_syn ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, ATGA3OX1, GA REQUIRING 4, GA3OX1, GA4, GIBBERELLIN 3 BETA-HYDROXYLASE, GIBBERELLIN 3-OXIDASE 1, T16N11.6, T16N11_6  gene GA3OX1  function Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (& 916;-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback).  go_component cytoplasm|GO:0005737|9701576|TAS  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process gibberellin biosynthetic process|GO:0009686|15923331|TAS  go_process gibberellin biosynthetic process|GO:0009686|2236013|IMP  go_process response to gibberellin stimulus|GO:0009739|15927942|IEP  go_process response to gibberellin stimulus|GO:0009739|17277098|IEP  go_process response to gibberellin stimulus|GO:0009739|17933900|IEP  go_process gibberellic acid mediated signaling|GO:0009740|9701576|TAS  go_process response to red light|GO:0010114|17449805|IEP  go_function transcription factor binding|GO:0008134|17277098|IPI  go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|2236013|IMP  go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|9625708|IDA  go_function gibberellin 3-beta-dioxygenase activity|GO:0016707|9701576|TAS  product GA3OX1 (GIBBERELLIN 3-OXIDASE 1); gibberellin 3-beta-dioxygenase/ transcription factor binding  note GIBBERELLIN 3-OXIDASE 1 (GA3OX1); FUNCTIONS IN: gibberellin 3-beta-dioxygenase activity, transcription factor binding; INVOLVED IN: response to red or far red light, response to gibberellin stimulus, response to red light, gibberellin biosynthetic process, gibberellic acid mediated signaling; LOCATED IN: cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: GA3OX2 (GIBBERELLIN 3-OXIDASE 2); gibberellin 3-beta-dioxygenase (TAIR:AT1G80340.1); Has 5824 Blast hits to 5810 proteins in 684 species: Archae - 0; Bacteria - 724; Metazoa - 113; Fungi - 634; Plants - 3064; Viruses - 0; Other Eukaryotes - 1289 (source: NCBI BLink).  protein_id AT1G15550.1p  transcript_id AT1G15550.1  protein_id AT1G15550.1p  transcript_id AT1G15550.1  
At1g15560	chr1:005352655	0.0	C/5352655-5354314	AT1G15560.1 mRNA_TE_gene  pseudo  gene_syn T16N11.7, T16N11_7  note Transposable element gene, CACTA-like transposase family (Ptta/En/Spm), has a 3.8e-130 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)  
At1g15570	chr1:005363034	0.0	W/5363034-5363249,5363361-5363607,5363704-5363840,5363938-5364030,5364119-5364252,5364337-5364412,5364485-5364595,5364691-5364840,5364935-5365069,5365165-5365218	AT1G15570.1 CDS  gene_syn CYCA2;3, CYCLIN A2;3, T16N11.8, T16N11_8  gene CYCA2;3  function A2-type cyclin. Negatively regulates endocycles and acts as a key regulator of ploidy levels in Arabidopsis endoreduplication. Interacts physically with CDKA;1. Expressed preferentially in trichomes and young developing tissues.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|16415207|IDA  go_process DNA endoreduplication|GO:0042023|16415207|IMP  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator  note CYCLIN A2;3 (CYCA2;3); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, DNA endoreduplication; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: CYCA2;4 (Cyclin A2;4); cyclin-dependent protein kinase regulator (TAIR:AT1G80370.1); Has 3253 Blast hits to 3252 proteins in 294 species: Archae - 0; Bacteria - 0; Metazoa - 1680; Fungi - 361; Plants - 699; Viruses - 35; Other Eukaryotes - 478 (source: NCBI BLink).  protein_id AT1G15570.1p  transcript_id AT1G15570.1  protein_id AT1G15570.1p  transcript_id AT1G15570.1  
At1g15580	chr1:005365764	0.0	C/5365764-5365824,5365913-5365997,5366115-5366460	AT1G15580.1 CDS  gene_syn ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, INDOLE-3-ACETIC ACID INDUCIBLE 5, T16N11.9, T16N11_9  gene IAA5  function auxin induced protein  go_component nucleus|GO:0005634||IEA  go_process response to auxin stimulus|GO:0009733|12036262|TAS  go_process response to auxin stimulus|GO:0009733|2102379|IEP  go_process response to brassinosteroid stimulus|GO:0009741|16367964|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function transcription factor activity|GO:0003700|11118137|ISS  product IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5); transcription factor  note INDOLE-3-ACETIC ACID INDUCIBLE 5 (IAA5); FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to cyclopentenone, response to auxin stimulus, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19); transcription factor (TAIR:AT3G15540.1); Has 1116 Blast hits to 1116 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1115; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G15580.1p  transcript_id AT1G15580.1  protein_id AT1G15580.1p  transcript_id AT1G15580.1  
At1g15590	chr1:005367374	0.0	W/5367374-5367759,5367838-5367963,5368205-5368232	AT1G15590.1 CDS  gene_syn T16N11.26, T16N11_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G80400.1); Has 118 Blast hits to 117 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15590.1p  transcript_id AT1G15590.1  protein_id AT1G15590.1p  transcript_id AT1G15590.1  
At1g15600	chr1:005368923	0.0	W/5368923-5369278,5369352-5369480,5369584-5369761	AT1G15600.1 CDS  gene_syn T16N11.10, T16N11_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1); Has 138 Blast hits to 138 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15600.1p  transcript_id AT1G15600.1  protein_id AT1G15600.1p  transcript_id AT1G15600.1  
At1g15610	chr1:005370793	0.0	W/5370793-5371184,5371261-5371386,5371466-5371679	AT1G15610.1 CDS  gene_syn T16N11.11, T16N11_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15630.1); Has 79 Blast hits to 79 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15610.1p  transcript_id AT1G15610.1  protein_id AT1G15610.1p  transcript_id AT1G15610.1  
At1g15620	chr1:005373553	0.0	W/5373553-5373935,5374020-5374145,5374248-5374476	AT1G15620.1 CDS  gene_syn T16N11.13, T16N11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15640.1); Has 74 Blast hits to 73 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15620.1p  transcript_id AT1G15620.1  protein_id AT1G15620.1p  transcript_id AT1G15620.1  
At1g15630	chr1:005376988	0.0	W/5376988-5377427,5377511-5377633,5377713-5377938	AT1G15630.1 CDS  gene_syn T16N11.14, T16N11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15610.1); Has 72 Blast hits to 72 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15630.1p  transcript_id AT1G15630.1  protein_id AT1G15630.1p  transcript_id AT1G15630.1  
At1g15640	chr1:005379077	0.0	W/5379077-5379480,5379565-5379690,5379790-5380027	AT1G15640.1 CDS  gene_syn T16N11.15, T16N11_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15620.1); Has 88 Blast hits to 87 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15640.1p  transcript_id AT1G15640.1  protein_id AT1G15640.1p  transcript_id AT1G15640.1  
At1g15650	chr1:005380907	0.0	W/5380907-5380988	AT1G15650.1 tRNA  gene_syn 51691.TRNA-SER-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G15650.1  
At1g15660	chr1:005381230	0.0	W/5381230-5381397,5381980-5382134,5382250-5382335,5382417-5382513,5382622-5382779,5382866-5383611,5383702-5383771,5383940-5384088,5384381-5384630,5384740-5384847,5384927-5385057	AT1G15660.1 CDS  gene_syn CENP-C, CENP-C HOMOLOGUE, CENTROMERE PROTEIN C, T16N11.16, T16N11_16  gene CENP-C  function Encodes a homologue of the human centromeric protein C (CENP-C). CENP-C co-localizes with the 180 bp centromeric regions of chromosomes throughout the cell cycle, but does not completely cover the 180 bp regions.  go_component chromosome, centromeric region|GO:0000775|15329494|IDA  go_component nucleus|GO:0005634|15329494|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product CENP-C (CENTROMERE PROTEIN C)  note CENTROMERE PROTEIN C (CENP-C); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; Has 339 Blast hits to 312 proteins in 108 species: Archae - 0; Bacteria - 2; Metazoa - 101; Fungi - 22; Plants - 53; Viruses - 8; Other Eukaryotes - 153 (source: NCBI BLink).  protein_id AT1G15660.1p  transcript_id AT1G15660.1  protein_id AT1G15660.1p  transcript_id AT1G15660.1  
At1g15670	chr1:005390119	0.0	W/5390119-5391198	AT1G15670.1 CDS  gene_syn F7H2.1, F7H2_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G80440.1); Has 847 Blast hits to 804 proteins in 93 species: Archae - 6; Bacteria - 58; Metazoa - 348; Fungi - 6; Plants - 389; Viruses - 2; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G15670.1p  transcript_id AT1G15670.1  protein_id AT1G15670.1p  transcript_id AT1G15670.1  
At1g15680	chr1:005393407	0.0	W/5393407-5394639	AT1G15680.1 CDS  gene_syn F7H2.2, F7H2_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23950.1); Has 459 Blast hits to 457 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 459; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15680.1p  transcript_id AT1G15680.1  protein_id AT1G15680.1p  transcript_id AT1G15680.1  
At1g15690	chr1:005399115	0.0	W/5399115-5399376,5399575-5400149,5400237-5400616,5400717-5400803,5400885-5401215,5401346-5401608,5402155-5402185	AT1G15690.2 CDS  gene_syn ARABIDOPSIS THALIANA V-PPASE 3, ATAVP3, AVP-3, AVP1, F7H2.3, F7H2_3, VACUOLAR H+ - PYROPHOSPHATASE AVP-3  gene AVP1  function Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component plasma membrane|GO:0005886|16210544|IDA  go_component plant-type vacuole membrane|GO:0009705|1311852|IDA  go_component endosome membrane|GO:0010008|16210544|IDA  go_process response to water deprivation|GO:0009414|11572991|IMP  go_process response to salt stress|GO:0009651|11572991|IMP  go_process auxin polar transport|GO:0009926|16210544|IGI  go_process establishment or maintenance of transmembrane electrochemical gradient|GO:0010248|1311852|TAS  go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|1311852|IDA  go_function ATPase activity|GO:0016887||ISS  product AVP1; ATPase/ hydrogen-translocating pyrophosphatase  note AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity, ATPase activity; INVOLVED IN: response to salt stress, response to water deprivation, establishment or maintenance of transmembrane electrochemical gradient, auxin polar transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2); hydrogen-translocating pyrophosphatase (TAIR:AT1G78920.2); Has 5116 Blast hits to 5098 proteins in 481 species: Archae - 54; Bacteria - 704; Metazoa - 2; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 4160 (source: NCBI BLink).  protein_id AT1G15690.2p  transcript_id AT1G15690.2  protein_id AT1G15690.2p  transcript_id AT1G15690.2  
At1g15690	chr1:005399115	0.0	W/5399115-5399376,5399575-5400149,5400237-5400616,5400717-5400803,5400885-5401215,5401346-5401756,5401838-5401897,5401979-5402185	AT1G15690.1 CDS  gene_syn ARABIDOPSIS THALIANA V-PPASE 3, ATAVP3, AVP-3, AVP1, F7H2.3, F7H2_3, VACUOLAR H+ - PYROPHOSPHATASE AVP-3  gene AVP1  function Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_component plasma membrane|GO:0005886|16210544|IDA  go_component plant-type vacuole membrane|GO:0009705|1311852|IDA  go_component endosome membrane|GO:0010008|16210544|IDA  go_process response to water deprivation|GO:0009414|11572991|IMP  go_process response to salt stress|GO:0009651|11572991|IMP  go_process auxin polar transport|GO:0009926|16210544|IGI  go_process establishment or maintenance of transmembrane electrochemical gradient|GO:0010248|1311852|TAS  go_function hydrogen-translocating pyrophosphatase activity|GO:0009678|1311852|IDA  go_function ATPase activity|GO:0016887||ISS  product AVP1; ATPase/ hydrogen-translocating pyrophosphatase  note AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity, ATPase activity; INVOLVED IN: response to salt stress, response to water deprivation, establishment or maintenance of transmembrane electrochemical gradient, auxin polar transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2); hydrogen-translocating pyrophosphatase (TAIR:AT1G78920.2); Has 5706 Blast hits to 5688 proteins in 482 species: Archae - 54; Bacteria - 710; Metazoa - 2; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 4742 (source: NCBI BLink).  protein_id AT1G15690.1p  transcript_id AT1G15690.1  protein_id AT1G15690.1p  transcript_id AT1G15690.1  
At1g15700	chr1:005402629	0.0	C/5402629-5403789	AT1G15700.1 CDS  gene_syn ATPC2, F7H2.4, F7H2_4  gene ATPC2  function One of two genes that encode the gamma subunit of Arabidopsis chloroplast ATP synthase. It is thought to be involved in the regulation of the ATP synthase activity.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|1826905|IDA  go_component chloroplast ATP synthase complex|GO:0009544|1826905|TAS  go_process ATP synthesis coupled proton transport|GO:0015986|1826905|TAS  go_function enzyme regulator activity|GO:0030234|1826905|TAS  product ATPC2; enzyme regulator  note ATPC2; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: chloroplast ATP synthase complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPC1; enzyme regulator (TAIR:AT4G04640.1); Has 6954 Blast hits to 6952 proteins in 1587 species: Archae - 5; Bacteria - 3156; Metazoa - 207; Fungi - 99; Plants - 112; Viruses - 0; Other Eukaryotes - 3375 (source: NCBI BLink).  protein_id AT1G15700.1p  transcript_id AT1G15700.1  protein_id AT1G15700.1p  transcript_id AT1G15700.1  
At1g15710	chr1:005404505	0.0	W/5404505-5405581	AT1G15710.1 CDS  gene_syn F7H2.5, F7H2_5  go_component chloroplast|GO:0009507|18431481|IDA  go_process tyrosine biosynthetic process|GO:0006571||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function prephenate dehydrogenase (NADP+) activity|GO:0004665||IEA  go_function binding|GO:0005488||IEA  go_process tyrosine biosynthetic process|GO:0006571||ISS  go_function prephenate dehydrogenase (NADP+) activity|GO:0004665||ISS  product prephenate dehydrogenase family protein  note prephenate dehydrogenase family protein; FUNCTIONS IN: binding, prephenate dehydrogenase (NADP+) activity, catalytic activity; INVOLVED IN: tyrosine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydrogenase (InterPro:IPR003099), NAD(P)-binding (InterPro:IPR016040), Arogenate/prephenate dehydrogenase, plant (InterPro:IPR012070); BEST Arabidopsis thaliana protein match is: arogenate dehydrogenase (TAIR:AT5G34930.1); Has 567 Blast hits to 562 proteins in 224 species: Archae - 54; Bacteria - 275; Metazoa - 3; Fungi - 70; Plants - 59; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G15710.1p  transcript_id AT1G15710.1  protein_id AT1G15710.1p  transcript_id AT1G15710.1  
At1g15720	chr1:005406138	0.0	W/5406138-5407310	AT1G15720.1 CDS  gene_syn F7H2.6, F7H2_6, TRF-LIKE 5, TRFL5  gene TRFL5  function Arabidopsis thaliana myb family transcription factor (At1g15720)  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product TRFL5 (TRF-LIKE 5); DNA binding / transcription factor  note TRF-LIKE 5 (TRFL5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G58340.1); Has 311 Blast hits to 306 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 36; Plants - 215; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G15720.1p  transcript_id AT1G15720.1  protein_id AT1G15720.1p  transcript_id AT1G15720.1  
At1g15730	chr1:005407535	0.0	C/5407535-5407672,5407781-5407885,5408031-5408116,5408203-5408318,5408501-5408592,5408688-5408738,5408903-5409099,5409200-5409380,5409459-5409524,5409623-5409937	AT1G15730.1 CDS  gene_syn F7H2.7, F7H2_7  product PRLI-interacting factor L, putative  note PRLI-interacting factor L, putative; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) (TAIR:AT1G80480.1); Has 12947 Blast hits to 8538 proteins in 1084 species: Archae - 92; Bacteria - 5184; Metazoa - 1588; Fungi - 449; Plants - 283; Viruses - 6; Other Eukaryotes - 5345 (source: NCBI BLink).  protein_id AT1G15730.1p  transcript_id AT1G15730.1  protein_id AT1G15730.1p  transcript_id AT1G15730.1  
At1g15740	chr1:005411509	0.0	W/5411509-5411724,5411801-5411929,5412013-5412220,5412342-5412488,5412607-5412681,5412757-5412828,5412927-5413001,5413096-5413167,5413264-5413335,5413445-5413516,5413594-5413665,5413752-5413895,5413981-5414052,5414136-5414282,5414360-5414544	AT1G15740.1 CDS  gene_syn F7H2.8, F7H2_8  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein  note leucine-rich repeat family protein; FUNCTIONS IN: protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein (TAIR:AT4G23840.1); Has 25965 Blast hits to 13594 proteins in 578 species: Archae - 6; Bacteria - 5108; Metazoa - 10615; Fungi - 448; Plants - 7228; Viruses - 79; Other Eukaryotes - 2481 (source: NCBI BLink).  protein_id AT1G15740.1p  transcript_id AT1G15740.1  protein_id AT1G15740.1p  transcript_id AT1G15740.1  
At1g15750	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.1 CDS  gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1  gene TPL  function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.  go_component nucleus|GO:0005634|16763149|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to auxin stimulus|GO:0009733|18258861|IPI  go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP  go_function protein binding|GO:0005515|16461579|IPI  go_function transcription repressor activity|GO:0016564|18258861|IDA  go_function protein homodimerization activity|GO:0042803|18258861|IPI  product TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor  note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPR1 (TOPLESS-RELATED 1) (TAIR:AT1G80490.2); Has 16596 Blast hits to 10032 proteins in 459 species: Archae - 32; Bacteria - 3036; Metazoa - 6827; Fungi - 3244; Plants - 1156; Viruses - 6; Other Eukaryotes - 2295 (source: NCBI BLink).  protein_id AT1G15750.1p  transcript_id AT1G15750.1  protein_id AT1G15750.1p  transcript_id AT1G15750.1  
At1g15750	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.2 CDS  gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1  gene TPL  function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.  go_component nucleus|GO:0005634|16763149|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to auxin stimulus|GO:0009733|18258861|IPI  go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP  go_function protein binding|GO:0005515|16461579|IPI  go_function transcription repressor activity|GO:0016564|18258861|IDA  go_function protein homodimerization activity|GO:0042803|18258861|IPI  product TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor  note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPR1 (TOPLESS-RELATED 1) (TAIR:AT1G80490.2); Has 16596 Blast hits to 10032 proteins in 459 species: Archae - 32; Bacteria - 3036; Metazoa - 6827; Fungi - 3244; Plants - 1156; Viruses - 6; Other Eukaryotes - 2295 (source: NCBI BLink).  protein_id AT1G15750.2p  transcript_id AT1G15750.2  protein_id AT1G15750.2p  transcript_id AT1G15750.2  
At1g15750	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.3 CDS  gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1  gene TPL  function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.  go_component nucleus|GO:0005634|16763149|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to auxin stimulus|GO:0009733|18258861|IPI  go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP  go_function protein binding|GO:0005515|16461579|IPI  go_function transcription repressor activity|GO:0016564|18258861|IDA  go_function protein homodimerization activity|GO:0042803|18258861|IPI  product TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor  note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPR1 (TOPLESS-RELATED 1) (TAIR:AT1G80490.2); Has 16596 Blast hits to 10032 proteins in 459 species: Archae - 32; Bacteria - 3036; Metazoa - 6827; Fungi - 3244; Plants - 1156; Viruses - 6; Other Eukaryotes - 2295 (source: NCBI BLink).  protein_id AT1G15750.3p  transcript_id AT1G15750.3  protein_id AT1G15750.3p  transcript_id AT1G15750.3  
At1g15750	chr1:005415086	0.0	C/5415086-5415299,5415428-5415594,5415677-5415865,5415950-5416045,5416143-5416271,5416353-5416532,5416606-5416716,5416808-5416954,5417031-5417126,5417207-5417347,5417439-5417801,5417885-5418076,5418159-5418232,5418308-5418377,5418459-5418568,5418661-5418942,5419042-5419165,5419237-5419414,5419512-5419670,5419782-5419895,5420000-5420179,5420280-5420359	AT1G15750.4 CDS  gene_syn F7H2.9, F7H2_9, TOPLESS, TPL, WSIP1, WUS-INTERACTING PROTEIN 1  gene TPL  function Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background.  go_component nucleus|GO:0005634|16763149|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process response to auxin stimulus|GO:0009733|18258861|IPI  go_process xylem and phloem pattern formation|GO:0010051|18258861|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IGI  go_process primary shoot apical meristem specification|GO:0010072|16763149|IMP  go_function protein binding|GO:0005515|16461579|IPI  go_function transcription repressor activity|GO:0016564|18258861|IDA  go_function protein homodimerization activity|GO:0042803|18258861|IPI  product TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor  note TOPLESS (TPL); FUNCTIONS IN: protein binding, transcription repressor activity, protein homodimerization activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, primary shoot apical meristem specification; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: TPR1 (TOPLESS-RELATED 1) (TAIR:AT1G80490.2); Has 16596 Blast hits to 10032 proteins in 459 species: Archae - 32; Bacteria - 3036; Metazoa - 6827; Fungi - 3244; Plants - 1156; Viruses - 6; Other Eukaryotes - 2295 (source: NCBI BLink).  protein_id AT1G15750.4p  transcript_id AT1G15750.4  protein_id AT1G15750.4p  transcript_id AT1G15750.4  
At1g15757	chr1:005424242	0.0	C/5424242-5424396,5424480-5424576	AT1G15757.1 CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59105.1); Has 26 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15757.1p  transcript_id AT1G15757.1  protein_id AT1G15757.1p  transcript_id AT1G15757.1  
At1g15760	chr1:005425714	0.0	W/5425714-5426322	AT1G15760.1 CDS  gene_syn F7H2.10, F7H2_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80520.1); Has 30 Blast hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15760.1p  transcript_id AT1G15760.1  protein_id AT1G15760.1p  transcript_id AT1G15760.1  
At1g15770	chr1:005426892	0.0	C/5426892-5427176,5427296-5427805,5428129-5428215	AT1G15770.1 CDS  gene_syn F7H2.11, F7H2_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 41 Blast hits to 27 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15770.1p  transcript_id AT1G15770.1  protein_id AT1G15770.1p  transcript_id AT1G15770.1  
At1g15772	chr1:005428877	0.0	C/5428877-5429092,5429185-5429232	AT1G15772.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15772.1p  transcript_id AT1G15772.1  protein_id AT1G15772.1p  transcript_id AT1G15772.1  
At1g15780	chr1:005430446	0.0	C/5430446-5430653,5430823-5430911,5431006-5431212,5431357-5431701,5431814-5433097,5433426-5433500,5433623-5433693,5433793-5435178,5435279-5435396,5435573-5435684,5435809-5435921	AT1G15780.1 CDS  gene_syn F7H2.12, F7H2_12  go_component cellular_component|GO:0005575||ND  product unknown protein  note unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.2); Has 95200 Blast hits to 37450 proteins in 1266 species: Archae - 22; Bacteria - 4610; Metazoa - 36935; Fungi - 9504; Plants - 6357; Viruses - 312; Other Eukaryotes - 37460 (source: NCBI BLink).  protein_id AT1G15780.1p  transcript_id AT1G15780.1  protein_id AT1G15780.1p  transcript_id AT1G15780.1  
At1g15790	chr1:005438477	0.0	C/5438477-5438521,5438755-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.1 CDS  gene_syn F7H2.13, F7H2_13  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 87 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15790.1p  transcript_id AT1G15790.1  protein_id AT1G15790.1p  transcript_id AT1G15790.1  
At1g15790	chr1:005438477	0.0	C/5438477-5438521,5438755-5438866,5439004-5439097,5439285-5439393,5439540-5439651,5439753-5439820	AT1G15790.2 CDS  gene_syn F7H2.13, F7H2_13  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 87 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15790.2p  transcript_id AT1G15790.2  protein_id AT1G15790.2p  transcript_id AT1G15790.2  
At1g15800	chr1:005441425	0.0	C/5441425-5441526,5441607-5441675,5441753-5441815,5441914-5441967,5443249-5443584	AT1G15800.1 CDS  gene_syn F7H2.14, F7H2_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 30 Blast hits to 28 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15800.1p  transcript_id AT1G15800.1  protein_id AT1G15800.1p  transcript_id AT1G15800.1  
At1g15810	chr1:005444496	0.0	W/5444496-5445363,5445526-5445608,5445759-5445870,5445980-5446032,5446128-5446271	AT1G15810.1 CDS  gene_syn F7H2.15, F7H2_15  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component small ribosomal subunit|GO:0015935||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein S15 family protein  note ribosomal protein S15 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: ribosomal protein S15 family protein (TAIR:AT1G80620.1); Has 5651 Blast hits to 5651 proteins in 1607 species: Archae - 0; Bacteria - 3067; Metazoa - 94; Fungi - 81; Plants - 397; Viruses - 0; Other Eukaryotes - 2012 (source: NCBI BLink).  protein_id AT1G15810.1p  transcript_id AT1G15810.1  protein_id AT1G15810.1p  transcript_id AT1G15810.1  
At1g15820	chr1:005446685	0.0	C/5446685-5447234,5447450-5447676	AT1G15820.1 CDS  gene_syn CHLOROPHYLL PROTEIN 24, CP24, F7H2.16, F7H2_16, LHCB6, LIGHT HARVESTING COMPLEX PSII SUBUNIT 6  gene LHCB6  function Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component photosystem II antenna complex|GO:0009783|11601979|NAS  go_component plastoglobule|GO:0010287|16461379|IDA  go_process nonphotochemical quenching|GO:0010196|18381925|IMP  go_process photosynthesis|GO:0015979|11340191|NAS  go_process photosynthesis|GO:0015979|18381925|IMP  go_function chlorophyll binding|GO:0016168||ISS  product LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6); chlorophyll binding  note LIGHT HARVESTING COMPLEX PSII SUBUNIT 6 (LHCB6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA6; chlorophyll binding (TAIR:AT1G19150.1); Has 1756 Blast hits to 1642 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1487; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G15820.1p  transcript_id AT1G15820.1  protein_id AT1G15820.1p  transcript_id AT1G15820.1  
At1g15825	chr1:005448149	0.0	C/5448149-5448529	AT1G15825.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / extensin family protein (TAIR:AT3G19020.1); Has 11265 Blast hits to 5002 proteins in 510 species: Archae - 54; Bacteria - 1434; Metazoa - 3392; Fungi - 725; Plants - 3734; Viruses - 553; Other Eukaryotes - 1373 (source: NCBI BLink).  protein_id AT1G15825.1p  transcript_id AT1G15825.1  protein_id AT1G15825.1p  transcript_id AT1G15825.1  
At1g15830	chr1:005448726	0.0	W/5448726-5450177	AT1G15830.1 CDS  gene_syn F7H2.23, F7H2_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; Has 147578 Blast hits to 47511 proteins in 1815 species: Archae - 216; Bacteria - 33133; Metazoa - 53776; Fungi - 10273; Plants - 15545; Viruses - 2335; Other Eukaryotes - 32300 (source: NCBI BLink).  protein_id AT1G15830.1p  transcript_id AT1G15830.1  protein_id AT1G15830.1p  transcript_id AT1G15830.1  
At1g15840	chr1:005451723	0.0	W/5451723-5451760,5451781-5452123	AT1G15840.1 CDS  gene_syn F7H2.17, F7H2_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; Has 102115 Blast hits to 26509 proteins in 1537 species: Archae - 135; Bacteria - 33167; Metazoa - 30989; Fungi - 6446; Plants - 9864; Viruses - 1537; Other Eukaryotes - 19977 (source: NCBI BLink).  protein_id AT1G15840.1p  transcript_id AT1G15840.1  protein_id AT1G15840.1p  transcript_id AT1G15840.1  
At1g15850	chr1:005453245	0.0	C/5453245-5453442,5453529-5453606,5453723-5453809,5454029-5454088	AT1G15850.1 CDS  gene_syn F7H2.18, F7H2_18  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G80670.1); Has 9650 Blast hits to 5139 proteins in 348 species: Archae - 24; Bacteria - 2994; Metazoa - 2796; Fungi - 1980; Plants - 541; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).  protein_id AT1G15850.1p  transcript_id AT1G15850.1  protein_id AT1G15850.1p  transcript_id AT1G15850.1  
At1g15860	chr1:005455055	0.0	W/5455055-5455127,5455429-5455513,5455652-5455726,5455818-5455854,5455964-5456047,5456139-5456199,5456304-5456410,5456504-5456569,5456646-5456741	AT1G15860.1 CDS  gene_syn F7H2.19, F7H2_19  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Defective in cullin neddylation (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 576 Blast hits to 576 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 403; Fungi - 78; Plants - 51; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G15860.1p  transcript_id AT1G15860.1  protein_id AT1G15860.1p  transcript_id AT1G15860.1  
At1g15860	chr1:005455055	0.0	W/5455055-5455127,5455429-5455513,5455652-5455726,5455818-5455854,5455964-5456047,5456139-5456199,5456304-5456410,5456504-5456569,5456646-5456741	AT1G15860.2 CDS  gene_syn F7H2.19, F7H2_19  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Defective in cullin neddylation (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1).  protein_id AT1G15860.2p  transcript_id AT1G15860.2  protein_id AT1G15860.2p  transcript_id AT1G15860.2  
At1g15870	chr1:005457153	0.0	W/5457153-5457395,5457666-5457988,5458083-5458245	AT1G15870.1 CDS  gene_syn F7H2.20, F7H2_20  go_component mitochondrial matrix|GO:0005759||IEA  go_component mitochondrial matrix|GO:0005759||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial glycoprotein family protein / MAM33 family protein  note mitochondrial glycoprotein family protein / MAM33 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: mitochondrial glycoprotein family protein / MAM33 family protein (TAIR:AT1G80720.1); Has 278 Blast hits to 278 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 81; Plants - 116; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G15870.1p  transcript_id AT1G15870.1  protein_id AT1G15870.1p  transcript_id AT1G15870.1  
At1g15880	chr1:005458718	0.0	C/5458718-5458831,5458954-5459067,5459198-5459362,5459561-5459800,5460051-5460089	AT1G15880.1 CDS  gene_syn F7H2.21, F7H2_21, GOS11, atgos11, golgi snare 11  gene GOS11  function Golgi SNARE 11 protein (GOS11)  go_component integral to membrane|GO:0016021|10831610|TAS  go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS  go_process membrane fusion|GO:0006944|10831610|IPI  go_function SNARE binding|GO:0000149|11115874|TAS  product GOS11 (golgi snare 11); SNARE binding  note golgi snare 11 (GOS11); FUNCTIONS IN: SNARE binding; INVOLVED IN: membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: GOS12 (GOLGI SNARE 12); SNARE binding (TAIR:AT2G45200.1); Has 297 Blast hits to 297 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 82; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G15880.1p  transcript_id AT1G15880.1  protein_id AT1G15880.1p  transcript_id AT1G15880.1  
At1g15885	chr1:005460550	0.0	W/5460550-5460690,5460970-5461095	AT1G15885.1 CDS  product unknown protein  note unknown protein; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15885.1p  transcript_id AT1G15885.1  protein_id AT1G15885.1p  transcript_id AT1G15885.1  
At1g15890	chr1:005461406	0.0	W/5461406-5463961	AT1G15890.1 CDS  gene_syn F7H2.22, F7H2_22  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process apoptosis|GO:0006915||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process defense response|GO:0006952||ISS  product disease resistance protein (CC-NBS-LRR class), putative  note disease resistance protein (CC-NBS-LRR class), putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: disease resistance protein (CC-NBS-LRR class), putative (TAIR:AT5G43730.1); Has 12716 Blast hits to 11782 proteins in 513 species: Archae - 12; Bacteria - 543; Metazoa - 2689; Fungi - 133; Plants - 9121; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G15890.1p  transcript_id AT1G15890.1  protein_id AT1G15890.1p  transcript_id AT1G15890.1  
At1g15900	chr1:005464356	0.0	W/5464356-5464697	AT1G15900.1 CDS  gene_syn F7H2.24, F7H2_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 6 Blast hits to 6 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G15900.1p  transcript_id AT1G15900.1  protein_id AT1G15900.1p  transcript_id AT1G15900.1  
At1g15910	chr1:005465951	0.0	W/5465951-5466851,5466933-5467114,5467228-5467317,5467431-5467718,5468073-5468285,5468493-5468723	AT1G15910.1 CDS  gene_syn T24D18.1, T24D18_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product XH/XS domain-containing protein / XS zinc finger domain-containing protein  note XH/XS domain-containing protein / XS zinc finger domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Region of unknown function XS (InterPro:IPR005380), Region of unknown function XH (InterPro:IPR005379), Region of unknown function, putative Zinc finger, XS and XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein / XS zinc finger domain-containing protein (TAIR:AT4G00380.1); Has 40525 Blast hits to 24283 proteins in 1162 species: Archae - 321; Bacteria - 3404; Metazoa - 21089; Fungi - 2450; Plants - 1098; Viruses - 158; Other Eukaryotes - 12005 (source: NCBI BLink).  protein_id AT1G15910.1p  transcript_id AT1G15910.1  protein_id AT1G15910.1p  transcript_id AT1G15910.1  
At1g15920	chr1:005469962	0.0	W/5469962-5470822	AT1G15920.1 CDS  gene_syn T24D18.2, T24D18_2  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT2G32070.1); Has 634 Blast hits to 622 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 94; Plants - 224; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G15920.1p  transcript_id AT1G15920.1  protein_id AT1G15920.1p  transcript_id AT1G15920.1  
At1g15920	chr1:005469962	0.0	W/5469962-5470822	AT1G15920.2 CDS  gene_syn T24D18.2, T24D18_2  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT2G32070.1); Has 634 Blast hits to 622 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 94; Plants - 224; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G15920.2p  transcript_id AT1G15920.2  protein_id AT1G15920.2p  transcript_id AT1G15920.2  
At1g15930	chr1:005471702	0.0	W/5471702-5471709,5472098-5472398,5472520-5472585,5472682-5472741	AT1G15930.1 CDS  gene_syn T24D18.3, T24D18_3  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S12 (RPS12A)  note 40S ribosomal protein S12 (RPS12A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cadmium ion, response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S12 (RPS12C) (TAIR:AT2G32060.3); Has 755 Blast hits to 755 proteins in 241 species: Archae - 164; Bacteria - 0; Metazoa - 257; Fungi - 123; Plants - 63; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G15930.1p  transcript_id AT1G15930.1  protein_id AT1G15930.1p  transcript_id AT1G15930.1  
At1g15930	chr1:005471702	0.0	W/5471702-5471709,5472098-5472398,5472520-5472585,5472682-5472741	AT1G15930.2 CDS  gene_syn T24D18.3, T24D18_3  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412|11598216|ISS  go_function structural constituent of ribosome|GO:0003735|11598216|ISS  product 40S ribosomal protein S12 (RPS12A)  note 40S ribosomal protein S12 (RPS12A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cadmium ion, response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S12e (InterPro:IPR000530), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: 40S ribosomal protein S12 (RPS12C) (TAIR:AT2G32060.3); Has 755 Blast hits to 755 proteins in 241 species: Archae - 164; Bacteria - 0; Metazoa - 257; Fungi - 123; Plants - 63; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G15930.2p  transcript_id AT1G15930.2  protein_id AT1G15930.2p  transcript_id AT1G15930.2  
At1g15940	chr1:005473672	0.0	W/5473672-5473785,5474095-5474298,5474414-5474595,5474688-5474814,5474899-5475096,5475218-5475268,5475353-5476060,5476147-5476242,5476328-5476401,5476485-5476536,5476626-5476712,5476801-5476844,5476933-5477007,5477090-5478050	AT1G15940.1 CDS  gene_syn T24D18.4, T24D18_4  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G80810.1); Has 97673 Blast hits to 51546 proteins in 1848 species: Archae - 315; Bacteria - 10939; Metazoa - 44638; Fungi - 10764; Plants - 3417; Viruses - 601; Other Eukaryotes - 26999 (source: NCBI BLink).  protein_id AT1G15940.1p  transcript_id AT1G15940.1  protein_id AT1G15940.1p  transcript_id AT1G15940.1  
At1g15950	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5481708-5481816,5481872-5481949	AT1G15950.2 CDS  gene_syn ATCCR1, CCR1, CINNAMOYL COA REDUCTASE, CINNAMOYL COA REDUCTASE 1, IRREGULAR XYLEM 4, IRX4, T24D18.5, T24D18_5  gene CCR1  function Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|7513083|IEP  go_process lignin biosynthetic process|GO:0009809|11430991|IDA  go_function cinnamoyl-CoA reductase activity|GO:0016621|11430991|IDA  product CCR1 (CINNAMOYL COA REDUCTASE 1); cinnamoyl-CoA reductase  note CINNAMOYL COA REDUCTASE 1 (CCR1); FUNCTIONS IN: cinnamoyl-CoA reductase activity; INVOLVED IN: lignin biosynthetic process, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: CCR2 (CINNAMOYL COA REDUCTASE); cinnamoyl-CoA reductase (TAIR:AT1G80820.1); Has 8120 Blast hits to 8110 proteins in 1156 species: Archae - 127; Bacteria - 3139; Metazoa - 367; Fungi - 599; Plants - 1429; Viruses - 48; Other Eukaryotes - 2411 (source: NCBI BLink).  protein_id AT1G15950.2p  transcript_id AT1G15950.2  protein_id AT1G15950.2p  transcript_id AT1G15950.2  
At1g15950	chr1:005478855	0.0	W/5478855-5478987,5479109-5479263,5479792-5479977,5480154-5480506,5481708-5481915	AT1G15950.1 CDS  gene_syn ATCCR1, CCR1, CINNAMOYL COA REDUCTASE, CINNAMOYL COA REDUCTASE 1, IRREGULAR XYLEM 4, IRX4, T24D18.5, T24D18_5  gene CCR1  function Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.  go_component cellular_component|GO:0005575||ND  go_process response to cold|GO:0009409|7513083|IEP  go_process lignin biosynthetic process|GO:0009809|11430991|IDA  go_function cinnamoyl-CoA reductase activity|GO:0016621|11430991|IDA  product CCR1 (CINNAMOYL COA REDUCTASE 1); cinnamoyl-CoA reductase  note CINNAMOYL COA REDUCTASE 1 (CCR1); FUNCTIONS IN: cinnamoyl-CoA reductase activity; INVOLVED IN: lignin biosynthetic process, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: CCR2 (CINNAMOYL COA REDUCTASE); cinnamoyl-CoA reductase (TAIR:AT1G80820.1); Has 8126 Blast hits to 8116 proteins in 1154 species: Archae - 129; Bacteria - 3139; Metazoa - 367; Fungi - 593; Plants - 1431; Viruses - 48; Other Eukaryotes - 2419 (source: NCBI BLink).  protein_id AT1G15950.1p  transcript_id AT1G15950.1  protein_id AT1G15950.1p  transcript_id AT1G15950.1  
At1g15960	chr1:005482202	0.0	C/5482202-5482519,5482612-5482707,5482790-5482921,5482997-5483101,5483198-5483371,5483447-5483516,5483588-5483769,5483847-5483956,5484076-5484180,5484314-5484392,5484480-5484520,5484607-5484685,5484974-5485066	AT1G15960.1 CDS  gene_syn ATNRAMP6, NRAMP6, T24D18.6, T24D18_6  gene NRAMP6  function member of Nramp2 family  go_component membrane|GO:0016020||IEA  go_process cellular metal ion homeostasis|GO:0006875|11500563|NAS  go_process metal ion transport|GO:0030001|11500563|NAS  go_process metal ion transport|GO:0030001||ISS  go_function inorganic anion transmembrane transporter activity|GO:0015103||ISS  go_function metal ion transmembrane transporter activity|GO:0046873|11500563|NAS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product NRAMP6; inorganic anion transmembrane transporter/ metal ion transmembrane transporter  note NRAMP6; FUNCTIONS IN: inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular metal ion homeostasis, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1); inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter (TAIR:AT1G80830.1); Has 3057 Blast hits to 3027 proteins in 861 species: Archae - 50; Bacteria - 2049; Metazoa - 300; Fungi - 168; Plants - 196; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).  protein_id AT1G15960.1p  transcript_id AT1G15960.1  protein_id AT1G15960.1p  transcript_id AT1G15960.1  
At1g15970	chr1:005486544	0.0	C/5486544-5486855,5486959-5487100,5487215-5487298,5487386-5487443,5488032-5488494	AT1G15970.1 CDS  gene_syn T24D18.7, T24D18_7  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function DNA-3-methyladenine glycosylase I activity|GO:0008725||ISS  product methyladenine glycosylase family protein  note methyladenine glycosylase family protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: methyladenine glycosylase family protein (TAIR:AT1G80850.1); Has 1969 Blast hits to 1969 proteins in 808 species: Archae - 7; Bacteria - 1545; Metazoa - 10; Fungi - 2; Plants - 83; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G15970.1p  transcript_id AT1G15970.1  protein_id AT1G15970.1p  transcript_id AT1G15970.1  
At1g15980	chr1:005489314	0.0	W/5489314-5489738,5489837-5489987,5490075-5490265,5490338-5490595,5490675-5490780,5490867-5490952,5491031-5491199	AT1G15980.1 CDS  gene_syn NDF1, NDH-DEPENDENT CYCLIC ELECTRON FLOW 1, T24D18.8, T24D18_8  gene NDF1  function encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|18785996|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18785996|IMP  go_process photosynthetic electron transport in photosystem I|GO:0009773|18785996|IMP  product NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)  note NDH-DEPENDENT CYCLIC ELECTRON FLOW 1 (NDF1); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 77 Blast hits to 77 proteins in 36 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G15980.1p  transcript_id AT1G15980.1  protein_id AT1G15980.1p  transcript_id AT1G15980.1  
At1g15990	chr1:005491304	0.0	C/5491304-5492023,5492093-5492441,5492527-5492840,5492939-5493151,5493239-5493772	AT1G15990.1 CDS  gene_syn ATCNGC7, CNGC7, CYCLIC NUCLEOTIDE GATED CHANNEL 7, T24D18.9, T24D18_9  gene ATCNGC7  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 7 (ATCNGC7); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: response to cadmium ion; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8); calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT1G19780.1); Has 2801 Blast hits to 2688 proteins in 227 species: Archae - 0; Bacteria - 46; Metazoa - 1284; Fungi - 50; Plants - 649; Viruses - 0; Other Eukaryotes - 772 (source: NCBI BLink).  protein_id AT1G15990.1p  transcript_id AT1G15990.1  protein_id AT1G15990.1p  transcript_id AT1G15990.1  
At1g16000	chr1:005494576	0.0	W/5494576-5494744,5495058-5495149	AT1G16000.1 CDS  gene_syn T24D18.10, T24D18_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1); Has 24 Blast hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16000.1p  transcript_id AT1G16000.1  protein_id AT1G16000.1p  transcript_id AT1G16000.1  
At1g16010	chr1:005495462	0.0	C/5495462-5495692,5495785-5495832,5495920-5496378,5496492-5497082	AT1G16010.1 CDS  gene_syn T24D18.11, T24D18_11  go_component vacuole|GO:0005773|15539469|IDA  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-1)  note magnesium transporter CorA-like family protein (MRS2-1); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MGT1) (MRS2) (TAIR:AT1G80900.1); Has 465 Blast hits to 459 proteins in 113 species: Archae - 2; Bacteria - 12; Metazoa - 57; Fungi - 136; Plants - 199; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G16010.1p  transcript_id AT1G16010.1  protein_id AT1G16010.1p  transcript_id AT1G16010.1  
At1g16010	chr1:005495462	0.0	C/5495462-5495692,5495785-5495832,5495920-5496378,5496492-5497082	AT1G16010.2 CDS  gene_syn T24D18.11, T24D18_11  go_process metal ion transport|GO:0030001||IEA  go_function metal ion transmembrane transporter activity|GO:0046873||IEA  go_component membrane|GO:0016020||ISS  go_process metal ion transport|GO:0030001||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product magnesium transporter CorA-like family protein (MRS2-1)  note magnesium transporter CorA-like family protein (MRS2-1); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter CorA-like family protein (MGT1) (MRS2) (TAIR:AT1G80900.1); Has 465 Blast hits to 459 proteins in 113 species: Archae - 2; Bacteria - 12; Metazoa - 57; Fungi - 136; Plants - 199; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G16010.2p  transcript_id AT1G16010.2  protein_id AT1G16010.2p  transcript_id AT1G16010.2  
At1g16020	chr1:005498633	0.0	W/5498633-5498808,5498986-5499079,5499192-5499375,5499475-5499513,5499641-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.1 CDS  gene_syn T24D18.12, T24D18_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80910.1); Has 143 Blast hits to 143 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G16020.1p  transcript_id AT1G16020.1  protein_id AT1G16020.1p  transcript_id AT1G16020.1  
At1g16020	chr1:005498633	0.0	W/5498633-5498808,5498986-5499079,5499192-5499375,5499641-5499750,5499828-5500367,5500449-5500604,5500685-5500902,5500988-5501018	AT1G16020.2 CDS  gene_syn T24D18.12, T24D18_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80910.1); Has 144 Blast hits to 144 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G16020.2p  transcript_id AT1G16020.2  protein_id AT1G16020.2p  transcript_id AT1G16020.2  
At1g16022	chr1:005501396	0.0	C/5501396-5501643,5501736-5501856	AT1G16022.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16022.1p  transcript_id AT1G16022.1  protein_id AT1G16022.1p  transcript_id AT1G16022.1  
At1g16025	chr1:005501505	0.0	W/5501505-5501648,5501762-5501959	AT1G16025.1 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16025.1p  transcript_id AT1G16025.1  protein_id AT1G16025.1p  transcript_id AT1G16025.1  
At1g16030	chr1:005502386	0.0	C/5502386-5504326	AT1G16030.1 CDS  gene_syn Hsp70b, T24D18.14, T24D18_14, heat shock protein 70B  gene Hsp70b  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function ATP binding|GO:0005524||IEA  go_component cytosol|GO:0005829|11402207|TAS  go_process protein folding|GO:0006457|11402207|TAS  go_process response to heat|GO:0009408|11402207|IEP  product Hsp70b (heat shock protein 70B); ATP binding  note heat shock protein 70B (Hsp70b); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: cytosol, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: HSP70 (heat shock protein 70); ATP binding (TAIR:AT3G12580.1); Has 24709 Blast hits to 24439 proteins in 3097 species: Archae - 107; Bacteria - 9686; Metazoa - 3084; Fungi - 1225; Plants - 724; Viruses - 242; Other Eukaryotes - 9641 (source: NCBI BLink).  protein_id AT1G16030.1p  transcript_id AT1G16030.1  protein_id AT1G16030.1p  transcript_id AT1G16030.1  
At1g16040	chr1:005504747	0.0	W/5504747-5504929,5505015-5505080,5505312-5505354,5505569-5505623,5505821-5505869,5505979-5506046,5506125-5506233,5506349-5506456	AT1G16040.1 CDS  gene_syn AT1G16050, T24D18.15, T24D18_15  go_component endoplasmic reticulum membrane|GO:0005789||IEA  go_component integral to membrane|GO:0016021||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580); Has 210 Blast hits to 210 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 80; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G16040.1p  transcript_id AT1G16040.1  protein_id AT1G16040.1p  transcript_id AT1G16040.1  
At1g16060	chr1:005508563	0.0	W/5508563-5508753,5508834-5508916,5509147-5509155,5509594-5509682,5509908-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.1 CDS  gene_syn T24D18.16, T24D18_16  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_process organ morphogenesis|GO:0009887|9636071|ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ovule development protein, putative  note ovule development protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ovule development protein, putative (TAIR:AT1G79700.2); Has 4033 Blast hits to 3000 proteins in 193 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 3968; Viruses - 2; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G16060.1p  transcript_id AT1G16060.1  protein_id AT1G16060.1p  transcript_id AT1G16060.1  
At1g16060	chr1:005509083	0.0	W/5509083-5509155,5509594-5509682,5509908-5509981,5510095-5510145,5510247-5510323,5511146-5511609	AT1G16060.2 CDS  gene_syn T24D18.16, T24D18_16  go_component nucleus|GO:0005634|10948255|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|8742706|TAS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process organ morphogenesis|GO:0009887|8742707|ISS  go_process organ morphogenesis|GO:0009887|9636071|ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|10948255|ISS  go_function transcription factor activity|GO:0003700|10948255|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ovule development protein, putative  note ovule development protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: organ morphogenesis, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ovule development protein, putative (TAIR:AT1G79700.2); Has 3022 Blast hits to 2496 proteins in 181 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2970; Viruses - 2; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G16060.2p  transcript_id AT1G16060.2  protein_id AT1G16060.2p  transcript_id AT1G16060.2  
At1g16070	chr1:005511899	0.0	C/5511899-5511974,5512077-5512144,5512224-5512316,5512387-5512476,5512567-5512663,5512756-5512811,5512904-5513080,5513161-5513275,5513358-5513779	AT1G16070.1 CDS  gene_syn AtTLP8, T24D18.17, T24D18_17, TUBBY LIKE PROTEIN 8  gene AtTLP8  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtTLP8 (TUBBY LIKE PROTEIN 8); transcription factor  note TUBBY LIKE PROTEIN 8 (AtTLP8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G47270.1); Has 603 Blast hits to 603 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 2; Plants - 268; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G16070.1p  transcript_id AT1G16070.1  protein_id AT1G16070.1p  transcript_id AT1G16070.1  
At1g16070	chr1:005511899	0.0	C/5511899-5511974,5512077-5512147,5512224-5512316,5512387-5512476,5512567-5512663,5512756-5512811,5512904-5513080,5513161-5513275,5513358-5513779	AT1G16070.2 CDS  gene_syn AtTLP8, T24D18.17, T24D18_17, TUBBY LIKE PROTEIN 8  gene AtTLP8  function Member of TLP family  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtTLP8 (TUBBY LIKE PROTEIN 8); transcription factor  note TUBBY LIKE PROTEIN 8 (AtTLP8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G47270.1); Has 604 Blast hits to 604 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 2; Plants - 270; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G16070.2p  transcript_id AT1G16070.2  protein_id AT1G16070.2p  transcript_id AT1G16070.2  
At1g16080	chr1:005514394	0.0	W/5514394-5514742,5514909-5515126,5515216-5515344,5515419-5515550,5515648-5515761	AT1G16080.1 CDS  gene_syn T24D18.18, T24D18_18  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  product unknown protein  note unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 37 Blast hits to 37 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G16080.1p  transcript_id AT1G16080.1  protein_id AT1G16080.1p  transcript_id AT1G16080.1  
At1g16090	chr1:005516259	0.0	W/5516259-5516862,5516908-5517068,5517111-5517182,5517264-5517380	AT1G16090.1 CDS  gene_syn T24D18.19, T24D18_19, WAKL7, wall associated kinase-like 7  gene WAKL7  function WAK-like kinase  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  product WAKL7 (wall associated kinase-like 7); protein serine/threonine kinase  note wall associated kinase-like 7 (WAKL7); FUNCTIONS IN: protein serine/threonine kinase activity; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695); BEST Arabidopsis thaliana protein match is: RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase (TAIR:AT1G79670.1); Has 469 Blast hits to 467 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 469; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16090.1p  transcript_id AT1G16090.1  protein_id AT1G16090.1p  transcript_id AT1G16090.1  
At1g16100	chr1:005518062	0.0	C/5518062-5518134	AT1G16100.1 tRNA  gene_syn 51681.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT1G16100.1  
At1g16110	chr1:005518381	0.0	W/5518381-5519344,5519429-5519545,5519623-5520470	AT1G16110.1 CDS  gene_syn T24D18.30, T24D18_30, WAKL6, wall associated kinase-like 6  gene WAKL6  function WAK-like kinase  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product WAKL6 (wall associated kinase-like 6); kinase  note wall associated kinase-like 6 (WAKL6); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAKL1 (wall associated kinase-like 1); kinase (TAIR:AT1G16120.1); Has 88895 Blast hits to 87223 proteins in 3072 species: Archae - 54; Bacteria - 7766; Metazoa - 39348; Fungi - 6989; Plants - 19147; Viruses - 468; Other Eukaryotes - 15123 (source: NCBI BLink).  protein_id AT1G16110.1p  transcript_id AT1G16110.1  protein_id AT1G16110.1p  transcript_id AT1G16110.1  
At1g16120	chr1:005522639	0.0	W/5522639-5523581,5523657-5523785,5523863-5524983	AT1G16120.1 CDS  gene_syn T24D18.20, T24D18_20, WAKL1, wall associated kinase-like 1  gene WAKL1  function wall-associated kinase like  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cell wall|GO:0005618||ISS  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product WAKL1 (wall associated kinase-like 1); kinase  note wall associated kinase-like 1 (WAKL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane, cell wall; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAKL5 (wall associated kinase-like 5); kinase (TAIR:AT1G16160.1); Has 89112 Blast hits to 87733 proteins in 3030 species: Archae - 56; Bacteria - 7820; Metazoa - 38884; Fungi - 7156; Plants - 19411; Viruses - 463; Other Eukaryotes - 15322 (source: NCBI BLink).  protein_id AT1G16120.1p  transcript_id AT1G16120.1  protein_id AT1G16120.1p  transcript_id AT1G16120.1  
At1g16130	chr1:005525634	0.0	W/5525634-5526543,5526627-5526749,5526834-5528047	AT1G16130.1 CDS  gene_syn T24D18.21, T24D18_21, WAKL2, wall associated kinase-like 2  gene WAKL2  function wall-associated kinase like  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product WAKL2 (wall associated kinase-like 2); kinase  note wall associated kinase-like 2 (WAKL2); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: integral to membrane; EXPRESSED IN: stem, leaf whorl, cotyledon, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.12 twelve leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAKL4 (WALL ASSOCIATED KINASE-LIKE 4); kinase (TAIR:AT1G16150.1); Has 88317 Blast hits to 87099 proteins in 3198 species: Archae - 58; Bacteria - 7879; Metazoa - 38546; Fungi - 6939; Plants - 19328; Viruses - 463; Other Eukaryotes - 15104 (source: NCBI BLink).  protein_id AT1G16130.1p  transcript_id AT1G16130.1  protein_id AT1G16130.1p  transcript_id AT1G16130.1  
At1g16140	chr1:005528965	0.0	W/5528965-5531255	AT1G16140.1 pseudogenic_transcript  pseudo  gene_syn T24D18.22, T24D18_22, WAKL3, wall associated kinase-like 3  gene WAKL3  function pseudogene similar to wall-associated kinase protein family  
At1g16150	chr1:005532415	0.0	W/5532415-5533348,5533434-5533610,5533649-5534877	AT1G16150.1 CDS  gene_syn T24D18.23, T24D18_23, WAKL4, WALL ASSOCIATED KINASE-LIKE 4  gene WAKL4  function Encodes a cell-wall associated kinase like protein of the receptor-like kinase (RLK) superfamily. Likely involved in Arabidopsis root mineral responses to Zn2+, Cu2+, K+, Na+ and Ni+.  go_component plasma membrane|GO:0005886|16286448|IDA  go_component plant-type cell wall|GO:0009505|16286448|IDA  go_component cell surface|GO:0009986|16286448|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process response to zinc ion|GO:0010043|16286448|IEP  go_process response to nickel ion|GO:0010045|16286448|IEP  go_process response to cadmium ion|GO:0046686|16286448|IEP  go_function kinase activity|GO:0016301||ISS  product WAKL4 (WALL ASSOCIATED KINASE-LIKE 4); kinase  note WALL ASSOCIATED KINASE-LIKE 4 (WAKL4); FUNCTIONS IN: kinase activity; INVOLVED IN: response to cadmium ion, response to zinc ion, protein amino acid phosphorylation, response to nickel ion; LOCATED IN: plasma membrane, cell surface, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Wall-associated kinase (InterPro:IPR013695), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097); BEST Arabidopsis thaliana protein match is: WAKL2 (wall associated kinase-like 2); kinase (TAIR:AT1G16130.1); Has 88040 Blast hits to 86717 proteins in 3132 species: Archae - 60; Bacteria - 7790; Metazoa - 38418; Fungi - 6983; Plants - 19257; Viruses - 440; Other Eukaryotes - 15092 (source: NCBI BLink).  protein_id AT1G16150.1p  transcript_id AT1G16150.1  protein_id AT1G16150.1p  transcript_id AT1G16150.1  
At1g16160	chr1:005535973	0.0	W/5535973-5536864,5536941-5537063,5537149-5538269	AT1G16160.1 CDS  gene_syn T24D18.24, T24D18_24, WAKL5, wall associated kinase-like 5  gene WAKL5  function WAK-like kinase  go_component chloroplast|GO:0009507||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product WAKL5 (wall associated kinase-like 5); kinase  note wall associated kinase-like 5 (WAKL5); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WAKL1 (wall associated kinase-like 1); kinase (TAIR:AT1G16120.1); Has 88960 Blast hits to 86691 proteins in 2966 species: Archae - 50; Bacteria - 7644; Metazoa - 39437; Fungi - 7058; Plants - 19175; Viruses - 463; Other Eukaryotes - 15133 (source: NCBI BLink).  protein_id AT1G16160.1p  transcript_id AT1G16160.1  protein_id AT1G16160.1p  transcript_id AT1G16160.1  
At1g16170	chr1:005538874	0.0	C/5538874-5539152	AT1G16170.1 CDS  gene_syn T24D18.25, T24D18_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16170.1p  transcript_id AT1G16170.1  protein_id AT1G16170.1p  transcript_id AT1G16170.1  
At1g16180	chr1:005540905	0.0	W/5540905-5541088,5541163-5541402,5541484-5541595,5541675-5541849,5541948-5542188,5542384-5542670	AT1G16180.1 CDS  gene_syn T24D18.26, T24D18_26  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_function molecular_function|GO:0003674||ND  product TMS membrane family protein / tumour differentially expressed (TDE) family protein  note TMS membrane family protein / tumour differentially expressed (TDE) family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: TMS membrane family protein / tumour differentially expressed (TDE) family protein (TAIR:AT3G06170.1); Has 608 Blast hits to 602 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 391; Fungi - 87; Plants - 80; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G16180.1p  transcript_id AT1G16180.1  protein_id AT1G16180.1p  transcript_id AT1G16180.1  
At1g16190	chr1:005543267	0.0	W/5543267-5543332,5543606-5543767,5544064-5544102,5544192-5544230,5544317-5544390,5544484-5544661,5544739-5544861,5544950-5545015,5545219-5545266,5545344-5545453,5545599-5545683,5545776-5545892	AT1G16190.1 CDS  go_component nucleus|GO:0005634||IEA  go_process nucleotide-excision repair|GO:0006289||IEA  go_process protein modification process|GO:0006464||IEA  go_process proteasomal ubiquitin-dependent protein catabolic process|GO:0043161||IEA  go_function damaged DNA binding|GO:0003684||IEA  go_process base-excision repair|GO:0006284||ISS  go_function damaged DNA binding|GO:0003684||ISS  product DNA repair protein RAD23, putative  note DNA repair protein RAD23, putative; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: protein modification process, proteasomal ubiquitin-dependent protein catabolic process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), UV excision repair protein Rad23, C-terminal (InterPro:IPR014761), XPC-binding domain (InterPro:IPR015360), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: RAD23; damaged DNA binding (TAIR:AT1G79650.2); Has 6642 Blast hits to 3540 proteins in 541 species: Archae - 2; Bacteria - 30; Metazoa - 2967; Fungi - 872; Plants - 1499; Viruses - 130; Other Eukaryotes - 1142 (source: NCBI BLink).  protein_id AT1G16190.1p  transcript_id AT1G16190.1  protein_id AT1G16190.1p  transcript_id AT1G16190.1  
At1g16210	chr1:005546352	0.0	C/5546352-5546378,5546497-5546616,5546890-5547447	AT1G16210.1 CDS  gene_syn F3O9.2, F3O9_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 15664 Blast hits to 7512 proteins in 781 species: Archae - 22; Bacteria - 2461; Metazoa - 4728; Fungi - 1475; Plants - 417; Viruses - 118; Other Eukaryotes - 6443 (source: NCBI BLink).  protein_id AT1G16210.1p  transcript_id AT1G16210.1  protein_id AT1G16210.1p  transcript_id AT1G16210.1  
At1g16220	chr1:005548653	0.0	W/5548653-5548907,5549098-5549466,5549543-5549660,5549746-5549969,5550044-5550553	AT1G16220.1 CDS  gene_syn F3O9.3, F3O9_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C family protein / PP2C family protein  note protein phosphatase 2C family protein / PP2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C family protein / PP2C family protein (TAIR:AT1G79630.1); Has 3708 Blast hits to 3706 proteins in 223 species: Archae - 0; Bacteria - 8; Metazoa - 1129; Fungi - 436; Plants - 1259; Viruses - 5; Other Eukaryotes - 871 (source: NCBI BLink).  protein_id AT1G16220.1p  transcript_id AT1G16220.1  protein_id AT1G16220.1p  transcript_id AT1G16220.1  
At1g16225	chr1:005551041	0.0	C/5551041-5551157,5551261-5551305,5551400-5551500,5551591-5551784,5551886-5552028	AT1G16225.1 CDS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: syntaxin-related family protein (TAIR:AT1G16230.1); Has 85 Blast hits to 85 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 22; Plants - 56; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G16225.1p  transcript_id AT1G16225.1  protein_id AT1G16225.1p  transcript_id AT1G16225.1  
At1g16230	chr1:005553467	0.0	C/5553467-5553532,5553618-5553718,5553812-5554011,5554110-5554324	AT1G16230.1 CDS  gene_syn F3O9.34, F3O9_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product syntaxin-related family protein  note syntaxin-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor (TAIR:AT1G16240.3); Has 116 Blast hits to 116 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 39; Plants - 60; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G16230.1p  transcript_id AT1G16230.1  protein_id AT1G16230.1p  transcript_id AT1G16230.1  
At1g16240	chr1:005555183	0.0	C/5555183-5555314,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.1 CDS  gene_syn ATSYP51, F3O9.4, F3O9_4, SYNTAXIN OF PLANTS 51, SYP51  gene SYP51  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component vacuole|GO:0005773|15539469|IDA  go_component endosome membrane|GO:0010008|11115874|NAS  go_component endosome membrane|GO:0010008|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor  note SYNTAXIN OF PLANTS 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor (TAIR:AT1G79590.2); Has 605 Blast hits to 605 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 233; Fungi - 155; Plants - 145; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G16240.1p  transcript_id AT1G16240.1  protein_id AT1G16240.1p  transcript_id AT1G16240.1  
At1g16240	chr1:005555183	0.0	C/5555183-5555314,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.2 CDS  gene_syn ATSYP51, F3O9.4, F3O9_4, SYNTAXIN OF PLANTS 51, SYP51  gene SYP51  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component vacuole|GO:0005773|15539469|IDA  go_component endosome membrane|GO:0010008|11115874|NAS  go_component endosome membrane|GO:0010008|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor  note SYNTAXIN OF PLANTS 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor (TAIR:AT1G79590.2); Has 605 Blast hits to 605 proteins in 139 species: Archae - 0; Bacteria - 2; Metazoa - 233; Fungi - 155; Plants - 145; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G16240.2p  transcript_id AT1G16240.2  protein_id AT1G16240.2p  transcript_id AT1G16240.2  
At1g16240	chr1:005555193	0.0	C/5555193-5555312,5555509-5555553,5555633-5555733,5555825-5556030,5556126-5556340	AT1G16240.3 CDS  gene_syn ATSYP51, F3O9.4, F3O9_4, SYNTAXIN OF PLANTS 51, SYP51  gene SYP51  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component endosome membrane|GO:0010008|11115874|NAS  go_component endosome membrane|GO:0010008|11115874|TAS  go_process vesicle-mediated transport|GO:0016192|11115874|TAS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP51 (SYNTAXIN OF PLANTS 51); SNAP receptor  note SYNTAXIN OF PLANTS 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: SYP52 (SYNTAXIN OF PLANTS 52); SNAP receptor (TAIR:AT1G79590.2); Has 390 Blast hits to 390 proteins in 110 species: Archae - 0; Bacteria - 2; Metazoa - 147; Fungi - 105; Plants - 96; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G16240.3p  transcript_id AT1G16240.3  protein_id AT1G16240.3p  transcript_id AT1G16240.3  
At1g16250	chr1:005557214	0.0	W/5557214-5557215,5557370-5557945,5558124-5558697	AT1G16250.1 CDS  gene_syn F3O9.5, F3O9_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT3G63220.2); Has 7013 Blast hits to 3858 proteins in 178 species: Archae - 4; Bacteria - 338; Metazoa - 5746; Fungi - 21; Plants - 596; Viruses - 32; Other Eukaryotes - 276 (source: NCBI BLink).  protein_id AT1G16250.1p  transcript_id AT1G16250.1  protein_id AT1G16250.1p  transcript_id AT1G16250.1  
At1g16260	chr1:005559708	0.0	C/5559708-5560915,5560984-5561088,5561169-5562018	AT1G16260.1 CDS  gene_syn F3O9.6, F3O9_6  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), EGF calcium-binding (InterPro:IPR013091), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase (TAIR:AT1G79670.1); Has 89333 Blast hits to 86843 proteins in 3155 species: Archae - 48; Bacteria - 7817; Metazoa - 40431; Fungi - 6739; Plants - 19030; Viruses - 457; Other Eukaryotes - 14811 (source: NCBI BLink).  protein_id AT1G16260.1p  transcript_id AT1G16260.1  protein_id AT1G16260.1p  transcript_id AT1G16260.1  
At1g16270	chr1:005563890	0.0	W/5563890-5566376,5566449-5566529,5566710-5566862,5566988-5567151,5567262-5567409,5567482-5567604,5567675-5567762,5567946-5568145	AT1G16270.1 CDS  gene_syn F3O9.7, F3O9_7  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein kinase activity|GO:0004672||ISS  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G79570.1); Has 87477 Blast hits to 86348 proteins in 3434 species: Archae - 51; Bacteria - 6991; Metazoa - 39639; Fungi - 6975; Plants - 18433; Viruses - 441; Other Eukaryotes - 14947 (source: NCBI BLink).  protein_id AT1G16270.1p  transcript_id AT1G16270.1  protein_id AT1G16270.1p  transcript_id AT1G16270.1  
At1g16280	chr1:005568482	0.0	C/5568482-5568634,5568815-5568913,5569014-5569095,5569180-5569383,5569464-5569786,5569873-5570487	AT1G16280.1 CDS  gene_syn F3O9.8, F3O9_8  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD/DEAH box helicase, putative  note DEAD/DEAH box helicase, putative; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (RH10) (TAIR:AT5G60990.1); Has 28907 Blast hits to 28173 proteins in 1763 species: Archae - 588; Bacteria - 11565; Metazoa - 5232; Fungi - 3482; Plants - 1415; Viruses - 33; Other Eukaryotes - 6592 (source: NCBI BLink).  protein_id AT1G16280.1p  transcript_id AT1G16280.1  protein_id AT1G16280.1p  transcript_id AT1G16280.1  
At1g16290	chr1:005570938	0.0	C/5570938-5570965,5571061-5571186,5571276-5571389,5571483-5571592,5571705-5571758,5571873-5572042,5572248-5572309,5572510-5572629,5572741-5572857,5572951-5573081,5573200-5573250,5573362-5573538	AT1G16290.1 CDS  gene_syn F3O9.9, F3O9_9  go_component vacuole|GO:0005773|14760709|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 119 Blast hits to 113 proteins in 24 species: Archae - 0; Bacteria - 39; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G16290.1p  transcript_id AT1G16290.1  protein_id AT1G16290.1p  transcript_id AT1G16290.1  
At1g16300	chr1:005574433	0.0	W/5574433-5574525,5574837-5574907,5575013-5575080,5575165-5575203,5575336-5575436,5575661-5575773,5575911-5576010,5576157-5576303,5576406-5576466,5576574-5576671,5576753-5576895,5577005-5577088,5577169-5577258,5577352-5577406	AT1G16300.1 CDS  gene_syn F3O9.10, F3O9_10, GAPCP-2  gene GAPCP-2  go_process glucose metabolic process|GO:0006006||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity|GO:0004365||IEA  go_function binding|GO:0005488||IEA  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_component plastid|GO:0009536|15533878|ISS  go_process glycolysis|GO:0006096||ISS  go_function glyceraldehyde-3-phosphate dehydrogenase activity|GO:0008943||ISS  product GAPCP-2; NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase  note GAPCP-2; FUNCTIONS IN: NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: glycolysis, glucose metabolic process, metabolic process; LOCATED IN: plastid; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (TAIR:AT1G79530.1); Has 17600 Blast hits to 17591 proteins in 4038 species: Archae - 29; Bacteria - 6618; Metazoa - 1465; Fungi - 1940; Plants - 2550; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink).  protein_id AT1G16300.1p  transcript_id AT1G16300.1  protein_id AT1G16300.1p  transcript_id AT1G16300.1  
At1g16310	chr1:005578435	0.0	W/5578435-5578708,5579235-5579347,5579434-5579679,5579769-5579849,5579925-5580155,5580244-5580585	AT1G16310.1 CDS  gene_syn F3O9.11, F3O9_11  go_component membrane|GO:0016020||IEA  go_process cation transport|GO:0006812||IEA  go_function cation transmembrane transporter activity|GO:0008324||IEA  go_component membrane|GO:0016020||ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  product cation efflux family protein  note cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: cation efflux family protein (TAIR:AT1G79520.1); Has 2870 Blast hits to 2866 proteins in 995 species: Archae - 100; Bacteria - 2206; Metazoa - 40; Fungi - 192; Plants - 103; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink).  protein_id AT1G16310.1p  transcript_id AT1G16310.1  protein_id AT1G16310.1p  transcript_id AT1G16310.1  
At1g16320	chr1:005580951	0.0	W/5580951-5581282,5581443-5581932	AT1G16320.1 CDS  gene_syn F3O9.12, F3O9_12  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79510.2); Has 187 Blast hits to 187 proteins in 61 species: Archae - 0; Bacteria - 61; Metazoa - 72; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G16320.1p  transcript_id AT1G16320.1  protein_id AT1G16320.1p  transcript_id AT1G16320.1  
At1g16330	chr1:005582387	0.0	C/5582387-5582522,5582614-5582792,5582886-5582984,5583089-5583148,5583228-5583389,5583479-5583568,5583697-5583819,5583898-5584176,5584395-5584457	AT1G16330.1 CDS  gene_syn CYCB3;1, F3O9.13, F3O9_13, cyclin b3;1  gene CYCB3;1  function core cell cycle genes  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCB3;1 (cyclin b3;1); cyclin-dependent protein kinase  note cyclin b3;1 (CYCB3;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator (TAIR:AT1G20610.1); Has 3416 Blast hits to 3413 proteins in 296 species: Archae - 0; Bacteria - 0; Metazoa - 1815; Fungi - 379; Plants - 687; Viruses - 35; Other Eukaryotes - 500 (source: NCBI BLink).  protein_id AT1G16330.1p  transcript_id AT1G16330.1  protein_id AT1G16330.1p  transcript_id AT1G16330.1  
At1g16340	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590241-5590338,5590431-5590469	AT1G16340.1 CDS  gene_syn ATKDSA2, ATKSDA, F3O9.14, F3O9_14  gene ATKDSA2  function Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|ISS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product ATKDSA2; 3-deoxy-8-phosphooctulonate synthase  note ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) (TAIR:AT1G79500.4); Has 5586 Blast hits to 5586 proteins in 1105 species: Archae - 46; Bacteria - 2695; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2802 (source: NCBI BLink).  protein_id AT1G16340.1p  transcript_id AT1G16340.1  protein_id AT1G16340.1p  transcript_id AT1G16340.1  
At1g16340	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590241-5590338,5590431-5590469	AT1G16340.2 CDS  gene_syn ATKDSA2, ATKSDA, F3O9.14, F3O9_14  gene ATKDSA2  function Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|ISS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product ATKDSA2; 3-deoxy-8-phosphooctulonate synthase  note ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) (TAIR:AT1G79500.4); Has 5586 Blast hits to 5586 proteins in 1105 species: Archae - 46; Bacteria - 2695; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2802 (source: NCBI BLink).  protein_id AT1G16340.2p  transcript_id AT1G16340.2  protein_id AT1G16340.2p  transcript_id AT1G16340.2  
At1g16340	chr1:005588123	0.0	C/5588123-5588179,5588259-5588306,5588386-5588433,5588522-5588620,5588723-5588767,5588882-5588940,5589064-5589148,5589229-5589303,5589423-5589482,5589565-5589630,5589929-5590025,5590241-5590338,5590431-5590469	AT1G16340.3 CDS  gene_syn ATKDSA2, ATKSDA, F3O9.14, F3O9_14  gene ATKDSA2  function Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500).  go_component cytoplasm|GO:0005737||IEA  go_component endomembrane system|GO:0012505||IEA  go_component cytoplasm|GO:0005737||ISS  go_process metabolic process|GO:0008152||ISS  go_process rhamnogalacturonan II biosynthetic process|GO:0010306|12754267|TAS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676|12754267|ISS  go_function 3-deoxy-8-phosphooctulonate synthase activity|GO:0008676||ISS  product ATKDSA2; 3-deoxy-8-phosphooctulonate synthase  note ATKDSA2; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: rhamnogalacturonan II biosynthetic process, metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) (TAIR:AT1G79500.4); Has 5586 Blast hits to 5586 proteins in 1105 species: Archae - 46; Bacteria - 2695; Metazoa - 4; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 2802 (source: NCBI BLink).  protein_id AT1G16340.3p  transcript_id AT1G16340.3  protein_id AT1G16340.3p  transcript_id AT1G16340.3  
At1g16350	chr1:005590951	0.0	W/5590951-5591353,5591469-5592064,5592171-5592350,5592444-5592701,5592801-5592872	AT1G16350.1 CDS  gene_syn F3O9.15, F3O9_15  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function IMP dehydrogenase activity|GO:0003938||IEA  go_component cellular_component|GO:0005575||ND  go_process GMP biosynthetic process|GO:0006177||ISS  go_function IMP dehydrogenase activity|GO:0003938||ISS  product inosine-5 -monophosphate dehydrogenase, putative  note inosine-5 -monophosphate dehydrogenase, putative; FUNCTIONS IN: IMP dehydrogenase activity, catalytic activity; INVOLVED IN: GMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990), IMP dehydrogenase related (InterPro:IPR018529), Aldolase-type TIM barrel (InterPro:IPR013785), IMP dehydrogenase/GMP reductase (InterPro:IPR001093), IMP dehydrogenase / GMP reductase, conserved site (InterPro:IPR015875); BEST Arabidopsis thaliana protein match is: inosine-5 -monophosphate dehydrogenase (TAIR:AT1G79470.1); Has 9519 Blast hits to 8908 proteins in 1485 species: Archae - 105; Bacteria - 3617; Metazoa - 423; Fungi - 118; Plants - 44; Viruses - 2; Other Eukaryotes - 5210 (source: NCBI BLink).  protein_id AT1G16350.1p  transcript_id AT1G16350.1  protein_id AT1G16350.1p  transcript_id AT1G16350.1  
At1g16360	chr1:005593493	0.0	C/5593493-5593550,5593672-5593961,5594097-5594394,5594524-5594594,5594697-5594810,5594902-5594976,5595075-5595179	AT1G16360.1 CDS  gene_syn F3O9.16, F3O9_16  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein  note LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALIS5 (ALA-Interacting Subunit 5) (TAIR:AT1G79450.1); Has 647 Blast hits to 647 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G16360.1p  transcript_id AT1G16360.1  protein_id AT1G16360.1p  transcript_id AT1G16360.1  
At1g16370	chr1:005596762	0.0	W/5596762-5598327	AT1G16370.1 CDS  gene_syn ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, ATOCT6, F3O9.17, F3O9_17, OCT6, ORGANIC CATION/CARNITINE TRANSPORTER 6  gene OCT6  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note ORGANIC CATION/CARNITINE TRANSPORTER 6 (OCT6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: AtOCT5 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER5); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G79410.1); Has 10264 Blast hits to 10187 proteins in 902 species: Archae - 161; Bacteria - 3952; Metazoa - 3380; Fungi - 1633; Plants - 642; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).  protein_id AT1G16370.1p  transcript_id AT1G16370.1  protein_id AT1G16370.1p  transcript_id AT1G16370.1  
At1g16380	chr1:005598453	0.0	C/5598453-5598732,5598873-5599813,5599903-5600880,5601209-5601367	AT1G16380.1 CDS  gene_syn ATCHX1, CATION EXCHANGER 1, CHX1, F3O9.18, F3O9_18  gene ATCHX1  function member of Putative Na+/H+ antiporter family  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|IC  go_function monovalent cation:proton antiporter activity|GO:0005451|11500563|NAS  go_function sodium:hydrogen antiporter activity|GO:0015385||ISS  product ATCHX1; monovalent cation:proton antiporter/ sodium:hydrogen antiporter  note ATCHX1; FUNCTIONS IN: monovalent cation:proton antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: ATCHX2 (CATION/H+ EXCHANGER 2); monovalent cation:proton antiporter/ sodium:hydrogen antiporter (TAIR:AT1G79400.1); Has 1526 Blast hits to 1505 proteins in 483 species: Archae - 122; Bacteria - 998; Metazoa - 0; Fungi - 88; Plants - 225; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G16380.1p  transcript_id AT1G16380.1  protein_id AT1G16380.1p  transcript_id AT1G16380.1  
At1g16390	chr1:005602921	0.0	W/5602921-5604477	AT1G16390.1 CDS  gene_syn ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3, ATOCT3, F3O9.19, F3O9_19  gene ATOCT3  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3 (ATOCT3); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT1G79360.1); Has 14668 Blast hits to 14637 proteins in 1162 species: Archae - 220; Bacteria - 6088; Metazoa - 3985; Fungi - 2765; Plants - 929; Viruses - 0; Other Eukaryotes - 681 (source: NCBI BLink).  protein_id AT1G16390.1p  transcript_id AT1G16390.1  protein_id AT1G16390.1p  transcript_id AT1G16390.1  
At1g16400	chr1:005605231	0.0	W/5605231-5606199,5606377-5606650,5606911-5607281	AT1G16400.1 CDS  gene_syn CYP79F2, CYTOCHROME P450 79F2, F3O9.20, F3O9_20  gene CYP79F2  function Encodes cytochrome P450 CYP79F2.  go_component endoplasmic reticulum|GO:0005783|11226190|IDA  go_process glucosinolate biosynthetic process|GO:0019761|12609033|IMP  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12609033|IDA  go_function oxygen binding|GO:0019825||ISS  product CYP79F2; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding  note CYP79F2; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen, oxygen binding; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP79F1 (CYTOCHROME P450 79F1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen (TAIR:AT1G16410.1); Has 20024 Blast hits to 19952 proteins in 1122 species: Archae - 21; Bacteria - 1357; Metazoa - 9382; Fungi - 3447; Plants - 5194; Viruses - 3; Other Eukaryotes - 620 (source: NCBI BLink).  protein_id AT1G16400.1p  transcript_id AT1G16400.1  protein_id AT1G16400.1p  transcript_id AT1G16400.1  
At1g16410	chr1:005608862	0.0	W/5608862-5609833,5609945-5610218,5610748-5611118	AT1G16410.1 CDS  gene_syn BUS1, BUSHY 1, CYP79F1, CYTOCHROME P450 79F1, F3O9.21, F3O9_21, SPS1, SUPERSHOOT 1  gene CYP79F1  function member of CYP79F  go_component endoplasmic reticulum|GO:0005783|11226190|IDA  go_process glucosinolate biosynthetic process|GO:0019761|12609033|IMP  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12609033|IDA  product CYP79F1 (CYTOCHROME P450 79F1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen  note CYTOCHROME P450 79F1 (CYP79F1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP79F2; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding (TAIR:AT1G16400.1); Has 19742 Blast hits to 19647 proteins in 1104 species: Archae - 19; Bacteria - 1285; Metazoa - 9445; Fungi - 3192; Plants - 5198; Viruses - 0; Other Eukaryotes - 603 (source: NCBI BLink).  protein_id AT1G16410.1p  transcript_id AT1G16410.1  protein_id AT1G16410.1p  transcript_id AT1G16410.1  
At1g16410	chr1:005608862	0.0	W/5608862-5609833,5609945-5610244	AT1G16410.2 CDS  gene_syn BUS1, BUSHY 1, CYP79F1, CYTOCHROME P450 79F1, F3O9.21, F3O9_21, SPS1, SUPERSHOOT 1  gene CYP79F1  function member of CYP79F  go_component endoplasmic reticulum|GO:0005783|11226190|IDA  go_process glucosinolate biosynthetic process|GO:0019761|12609033|IMP  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|GO:0016709|12609033|IDA  product CYP79F1 (CYTOCHROME P450 79F1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen  note CYTOCHROME P450 79F1 (CYP79F1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: CYP79F2; oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding (TAIR:AT1G16400.1); Has 11811 Blast hits to 11756 proteins in 831 species: Archae - 6; Bacteria - 574; Metazoa - 5789; Fungi - 994; Plants - 4179; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).  protein_id AT1G16410.2p  transcript_id AT1G16410.2  protein_id AT1G16410.2p  transcript_id AT1G16410.2  
At1g16420	chr1:005612304	0.0	C/5612304-5613100,5613481-5613829	AT1G16420.1 CDS  gene_syn ARABIDOPSIS THALIANA METACASPASE 8, ATMC8, F3O9.22, F3O9_22, MC8, METACASPASE 8  gene MC8  function Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2), UV light, and methyl viologen (MV). Transcript levels rise in response to UV-C, H2O2, and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue, and it has a pH optimum of 8.0.  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|17998208|IEP  go_process response to oxidative stress|GO:0006979|17998208|IMP  go_process response to UV-C|GO:0010225|17998208|IEP  go_process hydrogen peroxide-mediated programmed cell death|GO:0010421|17998208|IMP  go_process programmed cell death|GO:0012501|17998208|IMP  go_process response to hydrogen peroxide|GO:0042542|17998208|IMP  go_function cysteine-type endopeptidase activity|GO:0004197|17998208|IDA  product MC8 (METACASPASE 8); cysteine-type endopeptidase  note METACASPASE 8 (MC8); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: response to oxidative stress, response to UV-C, response to hydrogen peroxide, hydrogen peroxide-mediated programmed cell death, programmed cell death; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf whorl, leaf apex, cotyledon, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: AtMC7 (metacaspase 7); cysteine-type endopeptidase (TAIR:AT1G79310.1); Has 733 Blast hits to 730 proteins in 186 species: Archae - 2; Bacteria - 194; Metazoa - 0; Fungi - 182; Plants - 177; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G16420.1p  transcript_id AT1G16420.1  protein_id AT1G16420.1p  transcript_id AT1G16420.1  
At1g16430	chr1:005614632	0.0	W/5614632-5614787,5614877-5614942,5615167-5615397	AT1G16430.1 CDS  gene_syn F3O9.23, F3O9_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product surfeit locus protein 5 family protein / SURF5 family protein  note surfeit locus protein 5 family protein / SURF5 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Surfeit locus 5 (InterPro:IPR009332); BEST Arabidopsis thaliana protein match is: surfeit locus protein 5 family protein / SURF5 family protein (TAIR:AT1G07950.1); Has 176 Blast hits to 176 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 4; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G16430.1p  transcript_id AT1G16430.1  protein_id AT1G16430.1p  transcript_id AT1G16430.1  
At1g16440	chr1:005615841	0.0	W/5615841-5615879,5616100-5616713,5616786-5617632	AT1G16440.1 CDS  gene_syn F3O9.24, F3O9_24  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301|13678909|ISS  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AGC1.7 (AGC KINASE 1.7); kinase (TAIR:AT1G79250.1); Has 73611 Blast hits to 64666 proteins in 1671 species: Archae - 17; Bacteria - 6733; Metazoa - 32551; Fungi - 7829; Plants - 10391; Viruses - 350; Other Eukaryotes - 15740 (source: NCBI BLink).  protein_id AT1G16440.1p  transcript_id AT1G16440.1  protein_id AT1G16440.1p  transcript_id AT1G16440.1  
At1g16445	chr1:005617811	0.0	W/5617811-5618012,5618143-5618206,5618436-5618634,5618722-5618795,5618909-5619064,5619174-5619303	AT1G16445.1 CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product methylase-related  note methylase-related; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Putative rRNA methylase (InterPro:IPR010719); Has 531 Blast hits to 531 proteins in 250 species: Archae - 2; Bacteria - 482; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G16445.1p  transcript_id AT1G16445.1  protein_id AT1G16445.1p  transcript_id AT1G16445.1  
At1g16450	chr1:005619471	0.0	C/5619471-5619543	AT1G16450.1 tRNA  gene_syn 51361.TRNA-ARG-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Arg (anticodon: CCG)  transcript_id AT1G16450.1  
At1g16460	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5621981	AT1G16460.1 CDS  gene_syn ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2, ATMST2, ATRDH2, F3O9.26, F3O9_26, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, MST2  gene ATRDH2  function encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.  go_process sulfate transport|GO:0008272||IEA  go_component cytoplasm|GO:0005737|10951223|IDA  go_component cytosol|GO:0005829|10734224|IEP  go_process aging|GO:0007568||ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS  go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA  product ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); 3-mercaptopyruvate sulfurtransferase/ thiosulfate sulfurtransferase  note ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2 (ATRDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); 3-mercaptopyruvate sulfurtransferase/ sulfurtransferase/ thiosulfate sulfurtransferase (TAIR:AT1G79230.3); Has 4332 Blast hits to 4315 proteins in 848 species: Archae - 86; Bacteria - 1962; Metazoa - 224; Fungi - 102; Plants - 60; Viruses - 0; Other Eukaryotes - 1898 (source: NCBI BLink).  protein_id AT1G16460.1p  transcript_id AT1G16460.1  protein_id AT1G16460.1p  transcript_id AT1G16460.1  
At1g16460	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5621981	AT1G16460.3 CDS  gene_syn ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2, ATMST2, ATRDH2, F3O9.26, F3O9_26, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, MST2  gene ATRDH2  function encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.  go_process sulfate transport|GO:0008272||IEA  go_component cytoplasm|GO:0005737|10951223|IDA  go_component cytosol|GO:0005829|10734224|IEP  go_process aging|GO:0007568||ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS  go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA  product ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); 3-mercaptopyruvate sulfurtransferase/ thiosulfate sulfurtransferase  note ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2 (ATRDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); 3-mercaptopyruvate sulfurtransferase/ sulfurtransferase/ thiosulfate sulfurtransferase (TAIR:AT1G79230.3); Has 4332 Blast hits to 4315 proteins in 848 species: Archae - 86; Bacteria - 1962; Metazoa - 224; Fungi - 102; Plants - 60; Viruses - 0; Other Eukaryotes - 1898 (source: NCBI BLink).  protein_id AT1G16460.3p  transcript_id AT1G16460.3  protein_id AT1G16460.3p  transcript_id AT1G16460.3  
At1g16460	chr1:005619848	0.0	C/5619848-5619949,5620038-5620105,5620167-5620230,5620312-5620393,5620507-5620565,5620637-5620696,5620811-5620973,5621072-5621196,5621492-5621554,5621693-5621752,5621871-5622050,5622479-5622481	AT1G16460.2 CDS  gene_syn ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2, ATMST2, ATRDH2, F3O9.26, F3O9_26, MERCAPTOPYRUVATE SULFURTRANSFERASE, MERCAPTOPYRUVATE SULFURTRANSFERASE 2, MST2  gene ATRDH2  function encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.  go_process sulfate transport|GO:0008272||IEA  go_component cytoplasm|GO:0005737|10951223|IDA  go_component cytosol|GO:0005829|10734224|IEP  go_process aging|GO:0007568||ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792|10734224|ISS  go_function thiosulfate sulfurtransferase activity|GO:0004792||ISS  go_function 3-mercaptopyruvate sulfurtransferase activity|GO:0016784|10951223|IDA  product ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); 3-mercaptopyruvate sulfurtransferase/ thiosulfate sulfurtransferase  note ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2 (ATRDH2); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: cytosol, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); 3-mercaptopyruvate sulfurtransferase/ sulfurtransferase/ thiosulfate sulfurtransferase (TAIR:AT1G79230.1); Has 4332 Blast hits to 4315 proteins in 848 species: Archae - 86; Bacteria - 1962; Metazoa - 224; Fungi - 102; Plants - 60; Viruses - 0; Other Eukaryotes - 1898 (source: NCBI BLink).  protein_id AT1G16460.2p  transcript_id AT1G16460.2  protein_id AT1G16460.2p  transcript_id AT1G16460.2  
At1g16470	chr1:005623122	0.0	W/5623122-5623162,5623241-5623317,5623401-5623465,5623589-5623635,5623728-5623803,5623891-5623958,5624266-5624335,5624619-5624704,5624871-5624933,5625228-5625293,5625391-5625439	AT1G16470.1 CDS  gene_syn F3O9.27, F3O9_27, PAB1, PROTEASOME SUBUNIT PAB1  gene PAB1  function Encodes 20S proteasome subunit PAB1 (PAB1).  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase  note PROTEASOME SUBUNIT PAB1 (PAB1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit B, putative (TAIR:AT1G79210.3); Has 4901 Blast hits to 4900 proteins in 370 species: Archae - 503; Bacteria - 35; Metazoa - 1915; Fungi - 1037; Plants - 574; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).  protein_id AT1G16470.1p  transcript_id AT1G16470.1  protein_id AT1G16470.1p  transcript_id AT1G16470.1  
At1g16470	chr1:005623122	0.0	W/5623122-5623162,5623241-5623317,5623401-5623465,5623589-5623635,5623728-5623803,5623891-5623958,5624266-5624335,5624619-5624704,5624871-5624933,5625228-5625293,5625391-5625439	AT1G16470.2 CDS  gene_syn F3O9.27, F3O9_27, PAB1, PROTEASOME SUBUNIT PAB1  gene PAB1  function Encodes 20S proteasome subunit PAB1 (PAB1).  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function endopeptidase activity|GO:0004175||IEA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PAB1 (PROTEASOME SUBUNIT PAB1); endopeptidase/ peptidase/ threonine-type endopeptidase  note PROTEASOME SUBUNIT PAB1 (PAB1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome alpha-subunit, conserved site (InterPro:IPR000426), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit B, putative (TAIR:AT1G79210.3); Has 4901 Blast hits to 4900 proteins in 370 species: Archae - 503; Bacteria - 35; Metazoa - 1915; Fungi - 1037; Plants - 574; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).  protein_id AT1G16470.2p  transcript_id AT1G16470.2  protein_id AT1G16470.2p  transcript_id AT1G16470.2  
At1g16480	chr1:005625843	0.0	C/5625843-5628656	AT1G16480.1 CDS  gene_syn F3O9.28, F3O9_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G13650.1).  protein_id AT1G16480.1p  transcript_id AT1G16480.1  protein_id AT1G16480.1p  transcript_id AT1G16480.1  
At1g16489	chr1:005629216	0.0	W/5629216-5630488	AT1G16489.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G16490  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G16489.1  
At1g16490	chr1:005629859	0.0	C/5629859-5630414,5630495-5630624,5630706-5630844	AT1G16490.1 CDS  gene_syn ATMYB58, F3O9.29, F3O9_29, MYB DOMAIN PROTEIN 58, MYB58  gene MYB58  function Member of the R2R3 factor gene family.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process lignin biosynthetic process|GO:0009809|19122102|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|19122102|IDA  product MYB58 (MYB DOMAIN PROTEIN 58); DNA binding / transcription activator/ transcription factor  note MYB DOMAIN PROTEIN 58 (MYB58); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: lignin biosynthetic process, regulation of transcription, DNA-dependent, regulation of secondary cell wall thickening; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB63 (MYB DOMAIN PROTEIN 63); DNA binding / transcription activator/ transcription factor (TAIR:AT1G79180.1); Has 6297 Blast hits to 5802 proteins in 349 species: Archae - 0; Bacteria - 0; Metazoa - 646; Fungi - 279; Plants - 3768; Viruses - 6; Other Eukaryotes - 1598 (source: NCBI BLink).  protein_id AT1G16490.1p  transcript_id AT1G16490.1  protein_id AT1G16490.1p  transcript_id AT1G16490.1  
At1g16500	chr1:005639079	0.0	W/5639079-5639306,5639444-5639995	AT1G16500.1 CDS  gene_syn F3O9.30, F3O9_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 66 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 61; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16500.1p  transcript_id AT1G16500.1  protein_id AT1G16500.1p  transcript_id AT1G16500.1  
At1g16510	chr1:005644784	0.0	C/5644784-5645227	AT1G16510.1 CDS  gene_syn F3O9.31, F3O9_31  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G79130.1); Has 553 Blast hits to 551 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 552; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G16510.1p  transcript_id AT1G16510.1  protein_id AT1G16510.1p  transcript_id AT1G16510.1  
At1g16515	chr1:005647605	0.0	C/5647605-5647709	AT1G16515.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16515.1p  transcript_id AT1G16515.1  protein_id AT1G16515.1p  transcript_id AT1G16515.1  
At1g16520	chr1:005648904	0.0	W/5648904-5649173,5649613-5649681,5649784-5649837,5649983-5650040,5650125-5650199,5650280-5650513,5650596-5650641,5650744-5650822,5650906-5650998	AT1G16520.1 CDS  gene_syn F3O9.32  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 169 Blast hits to 162 proteins in 51 species: Archae - 2; Bacteria - 0; Metazoa - 53; Fungi - 8; Plants - 72; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G16520.1p  transcript_id AT1G16520.1  protein_id AT1G16520.1p  transcript_id AT1G16520.1  
At1g16530	chr1:005651470	0.0	C/5651470-5651784,5652657-5652839	AT1G16530.1 CDS  gene_syn ASL9, ASYMMETRIC LEAVES 2 LIKE 9, F3O9.33, F3O9_33, LBD3, LOB DOMAIN-CONTAINING PROTEIN 3  gene ASL9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)  note ASYMMETRIC LEAVES 2 LIKE 9 (ASL9); INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) (TAIR:AT1G31320.1); Has 560 Blast hits to 557 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16530.1p  transcript_id AT1G16530.1  protein_id AT1G16530.1p  transcript_id AT1G16530.1  
At1g16540	chr1:005659465	0.0	W/5659465-5659567,5659991-5660089,5660290-5660348,5660449-5660767,5660917-5661043,5661335-5661440,5661523-5661568,5661828-5661866,5661936-5662092,5662299-5662401,5662641-5662757,5662937-5663014,5663119-5663220,5663339-5663438,5663779-5663889,5664005-5664069,5664137-5664288,5664358-5664590,5664661-5664794,5664897-5665007,5665103-5665201	AT1G16540.1 CDS  gene_syn ABA DEFICIENT 3, ABA3, ATABA3, F19K19.13, F19K19_13, LOS5, LOW OSMOTIC STRESS 5, MOLYBDENUM COFACTOR SULFURASE, SIR3, SIRTINOL RESISTANT 3  gene ABA3  function Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. <i>sir</i> loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer.  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950|11549764|IMP  go_process response to osmotic stress|GO:0006970|11549764|IMP  go_process response to heat|GO:0009408|15923322|IMP  go_process response to cold|GO:0009409|11549764|IMP  go_process response to salt stress|GO:0009651|11549764|IMP  go_process abscisic acid biosynthetic process|GO:0009688|8893542|IMP  go_process auxin mediated signaling pathway|GO:0009734|15710899|IMP  go_process stomatal movement|GO:0010118|16959575|IMP  go_process sugar mediated signaling|GO:0010182|12663220|TAS  go_process molybdenum incorporation into molybdenum-molybdopterin complex|GO:0018315|11553608|IDA  go_process defense response to bacterium|GO:0042742|16959575|IMP  go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265|11553608|IDA  go_function selenocysteine lyase activity|GO:0009000|15561708|IDA  product ABA3 (ABA DEFICIENT 3); Mo-molybdopterin cofactor sulfurase/ selenocysteine lyase  note ABA DEFICIENT 3 (ABA3); FUNCTIONS IN: Mo-molybdopterin cofactor sulfurase activity, selenocysteine lyase activity; INVOLVED IN: in 11 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), MOSC, N-terminal beta barrel (InterPro:IPR005303), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Molybdenum cofactor sulfurase, C-terminal (InterPro:IPR005302), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1); Has 5157 Blast hits to 5131 proteins in 1119 species: Archae - 65; Bacteria - 3017; Metazoa - 337; Fungi - 243; Plants - 152; Viruses - 1; Other Eukaryotes - 1342 (source: NCBI BLink).  protein_id AT1G16540.1p  transcript_id AT1G16540.1  protein_id AT1G16540.1p  transcript_id AT1G16540.1  
At1g16550	chr1:005665907	0.0	W/5665907-5668209	AT1G16550.1 pseudogenic_transcript  pseudo  gene_syn F19K19.20  note pseudogene, putative cell division cycle protein, blastp match of 53% identity and 2.4e-136 P-value to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695) corresponds to a region of the predicted gene.~similar to valosin-containing protein (U20213) {Oryza sativa (japonica cultivar-group)}  
At1g16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.1 CDS  gene_syn F19K19.12, F19K19_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Per1-like family protein  note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like protein-related (TAIR:AT5G62130.1); Has 248 Blast hits to 238 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 103; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16560.1p  transcript_id AT1G16560.1  protein_id AT1G16560.1p  transcript_id AT1G16560.1  
At1g16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.2 CDS  gene_syn F19K19.12, F19K19_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Per1-like family protein  note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like protein-related (TAIR:AT5G62130.1); Has 248 Blast hits to 238 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 103; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16560.2p  transcript_id AT1G16560.2  protein_id AT1G16560.2p  transcript_id AT1G16560.2  
At1g16560	chr1:005668945	0.0	W/5668945-5669039,5669160-5669409,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.3 CDS  gene_syn F19K19.12, F19K19_12  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Per1-like family protein  note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like protein-related (TAIR:AT5G62130.1); Has 248 Blast hits to 238 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 103; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16560.3p  transcript_id AT1G16560.3  protein_id AT1G16560.3p  transcript_id AT1G16560.3  
At1g16560	chr1:005669234	0.0	W/5669234-5669413,5669493-5669689,5669779-5669966,5670045-5670343	AT1G16560.4 CDS  gene_syn F19K19.12, F19K19_12  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Per1-like family protein  note Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like protein-related (TAIR:AT5G62130.1); Has 241 Blast hits to 231 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 99; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16560.4p  transcript_id AT1G16560.4  protein_id AT1G16560.4p  transcript_id AT1G16560.4  
At1g16570	chr1:005670763	0.0	C/5670763-5670789,5670880-5671008,5671102-5671177,5671250-5671302,5671421-5671593,5671658-5671800,5671889-5671994,5672085-5672148,5672256-5672322,5672433-5672522,5672617-5672765,5672862-5672999,5673091-5673146,5673223-5673256,5673331-5673423	AT1G16570.1 CDS  gene_syn F19K19.11, F19K19_11  go_component mitochondrion|GO:0005739||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); Has 525 Blast hits to 512 proteins in 217 species: Archae - 24; Bacteria - 149; Metazoa - 135; Fungi - 91; Plants - 27; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G16570.1p  transcript_id AT1G16570.1  protein_id AT1G16570.1p  transcript_id AT1G16570.1  
At1g16570	chr1:005670763	0.0	C/5670763-5670789,5670880-5671177,5671250-5671302,5671421-5671593,5671658-5671800,5671889-5671994,5672085-5672148,5672256-5672322,5672433-5672522,5672617-5672765,5672862-5672999,5673091-5673146,5673223-5673256,5673331-5673423	AT1G16570.2 CDS  gene_syn F19K19.11, F19K19_11  go_component mitochondrion|GO:0005739||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); Has 512 Blast hits to 501 proteins in 213 species: Archae - 24; Bacteria - 143; Metazoa - 133; Fungi - 92; Plants - 27; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G16570.2p  transcript_id AT1G16570.2  protein_id AT1G16570.2p  transcript_id AT1G16570.2  
At1g16590	chr1:005673886	0.0	W/5673886-5673913,5674005-5674085,5674160-5674272,5674362-5674551,5674655-5674890	AT1G16590.1 CDS  gene_syn ATREV7, F19K19.10, F19K19_10, REV7  gene REV7  function putative translesion synthesis polymerase zeta subunit, homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).  go_component cellular_component|GO:0005575||ND  go_process response to DNA damage stimulus|GO:0006974|15908599|IMP  go_process mitotic cell cycle spindle assembly checkpoint|GO:0007094||ISS  go_process response to UV-B|GO:0010224|15908599|IMP  go_function DNA binding|GO:0003677||ISS  product REV7; DNA binding  note REV7; FUNCTIONS IN: DNA binding; INVOLVED IN: response to UV-B, response to DNA damage stimulus, mitotic cell cycle spindle assembly checkpoint; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); Has 214 Blast hits to 214 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 50; Plants - 21; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G16590.1p  transcript_id AT1G16590.1  protein_id AT1G16590.1p  transcript_id AT1G16590.1  
At1g16600	chr1:005675169	0.0	W/5675169-5675433	AT1G16600.1 pseudogenic_transcript  pseudo  gene_syn F19K19.21  note pseudogene, putative cycloartenol synthase  
At1g16610	chr1:005675925	0.0	C/5675925-5676006,5676282-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677355,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.2 CDS  gene_syn ARGININE/SERINE-RICH PROTEIN SR45, F19K19.9, F19K19_9, SR45  gene SR45  function SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleoplasm|GO:0005654|14675452|IDA  go_component nuclear speck|GO:0016607|14675452|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10593939|IPI  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|10593939|IPI  product SR45; RNA binding / protein binding  note SR45; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nucleoplasm, nuclear speck, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1); Has 54717 Blast hits to 31639 proteins in 1133 species: Archae - 38; Bacteria - 4589; Metazoa - 25801; Fungi - 6253; Plants - 4909; Viruses - 1176; Other Eukaryotes - 11951 (source: NCBI BLink).  protein_id AT1G16610.2p  transcript_id AT1G16610.2  protein_id AT1G16610.2p  transcript_id AT1G16610.2  
At1g16610	chr1:005675925	0.0	C/5675925-5676006,5676282-5676319,5676429-5676495,5676761-5676877,5677017-5677082,5677154-5677376,5677466-5677634,5677725-5677805,5677892-5677938,5678127-5678209,5678293-5678364,5678487-5678686	AT1G16610.1 CDS  gene_syn ARGININE/SERINE-RICH PROTEIN SR45, F19K19.9, F19K19_9, SR45  gene SR45  function SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleoplasm|GO:0005654|14675452|IDA  go_component nuclear speck|GO:0016607|14675452|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10593939|IPI  go_process RNA splicing|GO:0008380|16807317|NAS  go_function RNA binding|GO:0003723||ISS  go_function protein binding|GO:0005515|10593939|IPI  product SR45; RNA binding / protein binding  note SR45; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nucleoplasm, nuclear speck, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1); Has 55298 Blast hits to 32098 proteins in 1164 species: Archae - 43; Bacteria - 4683; Metazoa - 26224; Fungi - 6327; Plants - 4923; Viruses - 1224; Other Eukaryotes - 11874 (source: NCBI BLink).  protein_id AT1G16610.1p  transcript_id AT1G16610.1  protein_id AT1G16610.1p  transcript_id AT1G16610.1  
At1g16620	chr1:005679819	0.0	W/5679819-5681188	AT1G16620.1 mRNA_TE_gene  pseudo  gene_syn F19K19.24  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-158 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g16630	chr1:005682212	0.0	C/5682212-5684749	AT1G16630.1 CDS  gene_syn F19K19.8, F19K19_8  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16270.1); Has 11932 Blast hits to 5221 proteins in 448 species: Archae - 45; Bacteria - 656; Metazoa - 5756; Fungi - 729; Plants - 423; Viruses - 460; Other Eukaryotes - 3863 (source: NCBI BLink).  protein_id AT1G16630.1p  transcript_id AT1G16630.1  protein_id AT1G16630.1p  transcript_id AT1G16630.1  
At1g16640	chr1:005686763	0.0	W/5686763-5686828,5687195-5687533	AT1G16640.1 CDS  gene_syn F19K19.7, F19K19_7  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT3G06220.1); Has 113 Blast hits to 106 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16640.1p  transcript_id AT1G16640.1  protein_id AT1G16640.1p  transcript_id AT1G16640.1  
At1g16650	chr1:005687994	0.0	W/5687994-5688116,5688195-5688290,5688395-5688478,5688573-5688647,5689021-5689101,5689311-5689450,5689612-5689848,5689973-5690147,5690258-5690341,5690455-5690584,5690661-5690818,5690919-5691101	AT1G16650.1 CDS  gene_syn F19K19.6, F19K19_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; Has 381 Blast hits to 335 proteins in 115 species: Archae - 0; Bacteria - 42; Metazoa - 234; Fungi - 61; Plants - 12; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G16650.1p  transcript_id AT1G16650.1  protein_id AT1G16650.1p  transcript_id AT1G16650.1  
At1g16660	chr1:005692024	0.0	W/5692024-5696458	AT1G16660.1 mRNA_TE_gene  pseudo  gene_syn F19K19.5  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-268 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g16670	chr1:005697846	0.0	W/5697846-5697900,5698023-5698138,5698227-5698437,5698526-5698769,5698860-5699010,5699097-5699492	AT1G16670.1 CDS  gene_syn F19K19.4, F19K19_4  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G09010.1); Has 86261 Blast hits to 85145 proteins in 3101 species: Archae - 56; Bacteria - 7465; Metazoa - 37883; Fungi - 6798; Plants - 18959; Viruses - 382; Other Eukaryotes - 14718 (source: NCBI BLink).  protein_id AT1G16670.1p  transcript_id AT1G16670.1  protein_id AT1G16670.1p  transcript_id AT1G16670.1  
At1g16680	chr1:005702813	0.0	W/5702813-5702845,5702936-5702957,5703036-5703250,5703405-5703490,5703751-5704168,5704251-5704331,5704433-5704537,5704633-5704746,5704848-5704931,5705010-5705081,5705277-5705537	AT1G16680.1 CDS  gene_syn F19K19.3, F19K19_3  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative  note DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative (TAIR:AT1G79030.1); Has 12678 Blast hits to 12678 proteins in 1886 species: Archae - 78; Bacteria - 4315; Metazoa - 2676; Fungi - 1053; Plants - 898; Viruses - 36; Other Eukaryotes - 3622 (source: NCBI BLink).  protein_id AT1G16680.1p  transcript_id AT1G16680.1  protein_id AT1G16680.1p  transcript_id AT1G16680.1  
At1g16690	chr1:005706458	0.0	W/5706458-5706616,5706706-5706838,5706915-5707017,5707379-5707502,5707820-5707885,5708010-5708048,5708150-5708230,5708333-5708380,5708475-5708525,5708640-5708708,5708811-5709047,5709162-5709371	AT1G16690.1 CDS  gene_syn F19K19.2, F19K19_2  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G79020.1); Has 281 Blast hits to 281 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 58; Plants - 37; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G16690.1p  transcript_id AT1G16690.1  protein_id AT1G16690.1p  transcript_id AT1G16690.1  
At1g16700	chr1:005710012	0.0	W/5710012-5710065,5710481-5710559,5710660-5710713,5710824-5710915,5710996-5711109,5711208-5711275,5711387-5711498,5711599-5711694	AT1G16700.1 CDS  gene_syn ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 14, ATMLO14, F19K19.1, F19K19_1  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_function NADH dehydrogenase (ubiquinone) activity|GO:0008137||ISS  product NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative  note NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, metal ion binding; LOCATED IN: mitochondrion, respiratory chain complex I; CONTAINS InterPro DOMAIN/s: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup (InterPro:IPR001450), NADH-quinone oxidoreductase, chain I (InterPro:IPR010226), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), Alpha-helical ferredoxin (InterPro:IPR009051); BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) (TAIR:AT1G79010.1); Has 7775 Blast hits to 7384 proteins in 1556 species: Archae - 918; Bacteria - 3928; Metazoa - 127; Fungi - 70; Plants - 695; Viruses - 0; Other Eukaryotes - 2037 (source: NCBI BLink).  protein_id AT1G16700.1p  transcript_id AT1G16700.1  protein_id AT1G16700.1p  transcript_id AT1G16700.1  
At1g16705	chr1:005712469	0.0	W/5712469-5712515,5712877-5712991,5713181-5713333,5713448-5713522	AT1G16705.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product p300/CBP acetyltransferase-related protein-related  note p300/CBP acetyltransferase-related protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: HAC12 (histone acetyltransferase of the CBP family 12); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (TAIR:AT1G16710.1); Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16705.2p  transcript_id AT1G16705.2  protein_id AT1G16705.2p  transcript_id AT1G16705.2  
At1g16705	chr1:005712469	0.0	W/5712469-5712515,5712877-5712991,5713181-5713333,5713451-5713522	AT1G16705.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product p300/CBP acetyltransferase-related protein-related  note p300/CBP acetyltransferase-related protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: HAC12 (histone acetyltransferase of the CBP family 12); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (TAIR:AT1G16710.1); Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16705.1p  transcript_id AT1G16705.1  protein_id AT1G16705.1p  transcript_id AT1G16705.1  
At1g16710	chr1:005714692	0.0	W/5714692-5714933,5715174-5715288,5715376-5715637,5715724-5716316,5716422-5718023,5718146-5718442,5718537-5718815,5718976-5719104,5719217-5719417,5719505-5719647,5719736-5720048,5720163-5720302,5720461-5720539,5720653-5721045,5721229-5721446,5721668-5721782	AT1G16710.1 CDS  gene_syn F19K19.17, HAC12, histone acetyltransferase of the CBP family 12  gene HAC12  function Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process protein amino acid acetylation|GO:0006473|17144897|IMP  go_process flower development|GO:0009908|17144897|IGI  go_function transcription cofactor activity|GO:0003712||ISS  go_function histone acetyltransferase activity|GO:0004402|12466527|ISS  go_function H3/H4 histone acetyltransferase activity|GO:0004406|17877703|IDA  product HAC12 (histone acetyltransferase of the CBP family 12); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor  note histone acetyltransferase of the CBP family 12 (HAC12); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity, H3/H4 histone acetyltransferase activity; INVOLVED IN: flower development, regulation of transcription, DNA-dependent, protein amino acid acetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), Transcriptional coactivation (InterPro:IPR009255); BEST Arabidopsis thaliana protein match is: HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ transcription cofactor (TAIR:AT1G79000.1); Has 5334 Blast hits to 3823 proteins in 228 species: Archae - 0; Bacteria - 171; Metazoa - 1785; Fungi - 438; Plants - 274; Viruses - 18; Other Eukaryotes - 2648 (source: NCBI BLink).  protein_id AT1G16710.1p  transcript_id AT1G16710.1  protein_id AT1G16710.1p  transcript_id AT1G16710.1  
At1g16720	chr1:005723161	0.0	W/5723161-5723730,5723824-5724036,5724139-5724343,5724441-5724516,5724677-5724812,5724897-5725001,5725126-5725206,5725309-5725398,5725537-5725602,5725669-5725725,5725825-5725902,5726051-5726098,5726177-5726248	AT1G16720.1 CDS  gene_syn F19K19.14, HCF173, high chlorophyll fluorescence phenotype 173  gene HCF173  function Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function transcription repressor activity|GO:0016564||IEA  go_process translational initiation|GO:0006413|17435084|IMP  go_process photosystem II assembly|GO:0010207|17435084|IMP  product HCF173 (high chlorophyll fluorescence phenotype 173); binding / catalytic/ transcription repressor  note high chlorophyll fluorescence phenotype 173 (HCF173); FUNCTIONS IN: transcription repressor activity, binding, catalytic activity; INVOLVED IN: photosystem II assembly, translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: binding / catalytic/ transcription repressor (TAIR:AT4G18810.1); Has 1260 Blast hits to 1145 proteins in 270 species: Archae - 10; Bacteria - 816; Metazoa - 6; Fungi - 4; Plants - 275; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G16720.1p  transcript_id AT1G16720.1  protein_id AT1G16720.1p  transcript_id AT1G16720.1  
At1g16730	chr1:005726617	0.0	C/5726617-5726760,5726848-5727312	AT1G16730.1 CDS  gene_syn F19K19.18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16730.1p  transcript_id AT1G16730.1  protein_id AT1G16730.1p  transcript_id AT1G16730.1  
At1g16740	chr1:005727773	0.0	W/5727773-5727958,5728756-5728950	AT1G16740.1 CDS  gene_syn F19K19.15  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L20 family protein  note ribosomal protein L20 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L20, bacterial-type (InterPro:IPR005812), Ribosomal protein L20 (InterPro:IPR005813); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00660.1); Has 5711 Blast hits to 5711 proteins in 1648 species: Archae - 0; Bacteria - 2947; Metazoa - 105; Fungi - 0; Plants - 471; Viruses - 0; Other Eukaryotes - 2188 (source: NCBI BLink).  protein_id AT1G16740.1p  transcript_id AT1G16740.1  protein_id AT1G16740.1p  transcript_id AT1G16740.1  
At1g16750	chr1:005729221	0.0	C/5729221-5729532,5729613-5729732,5729812-5729904,5729996-5730055,5730136-5730235,5730317-5730804,5730884-5731033,5731131-5731247,5731338-5731424,5731528-5731558,5731658-5731689	AT1G16750.1 CDS  gene_syn F19K19.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT3G13000.2); Has 420 Blast hits to 403 proteins in 70 species: Archae - 0; Bacteria - 56; Metazoa - 34; Fungi - 2; Plants - 297; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G16750.1p  transcript_id AT1G16750.1  protein_id AT1G16750.1p  transcript_id AT1G16750.1  
At1g16760	chr1:005734234	0.0	W/5734234-5734411,5734542-5734633,5734728-5734849,5734949-5735136,5735231-5735285,5735364-5735694,5735791-5735892,5735975-5736385,5736510-5737307	AT1G16760.1 CDS  gene_syn F19K19.25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G78940.1); Has 81479 Blast hits to 80573 proteins in 3070 species: Archae - 67; Bacteria - 7602; Metazoa - 35854; Fungi - 6155; Plants - 18414; Viruses - 263; Other Eukaryotes - 13124 (source: NCBI BLink).  protein_id AT1G16760.1p  transcript_id AT1G16760.1  protein_id AT1G16760.1p  transcript_id AT1G16760.1  
At1g16770	chr1:005737900	0.0	W/5737900-5737953,5738045-5738284,5738364-5738514,5738581-5739110	AT1G16770.1 CDS  gene_syn F17F16.12, F17F16_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 59 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 39; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16770.1p  transcript_id AT1G16770.1  protein_id AT1G16770.1p  transcript_id AT1G16770.1  
At1g16770	chr1:005738135	0.0	W/5738135-5738284,5738364-5738514,5738581-5739110	AT1G16770.2 CDS  gene_syn F17F16.12, F17F16_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 55 Blast hits to 55 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 35; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16770.2p  transcript_id AT1G16770.2  protein_id AT1G16770.2p  transcript_id AT1G16770.2  
At1g16780	chr1:005739468	0.0	C/5739468-5739567,5739697-5739916,5740003-5740114,5740195-5740350,5740441-5740605,5740689-5741126,5741310-5741497,5741672-5741792,5741888-5742060,5742435-5742567,5742637-5742784,5742870-5743021,5743126-5743329,5743471-5743569	AT1G16780.1 CDS  gene_syn F17F16.2, F17F16_2  go_component vacuole|GO:0005773|15215502|IDA  go_process proton transport|GO:0015992||IEA  go_function inorganic diphosphatase activity|GO:0004427||IEA  go_function hydrogen-translocating pyrophosphatase activity|GO:0009678||IEA  product vacuolar-type H+-translocating inorganic pyrophosphatase, putative  note vacuolar-type H+-translocating inorganic pyrophosphatase, putative; FUNCTIONS IN: inorganic diphosphatase activity, hydrogen-translocating pyrophosphatase activity; INVOLVED IN: proton transport; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2); hydrogen-translocating pyrophosphatase (TAIR:AT1G78920.2); Has 5737 Blast hits to 5721 proteins in 477 species: Archae - 54; Bacteria - 691; Metazoa - 2; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 4801 (source: NCBI BLink).  protein_id AT1G16780.1p  transcript_id AT1G16780.1  protein_id AT1G16780.1p  transcript_id AT1G16780.1  
At1g16790	chr1:005744638	0.0	W/5744638-5745072	AT1G16790.1 CDS  gene_syn F17F16.10, F17F16_10  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ribosomal protein-related  note ribosomal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 4 Blast hits to 4 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16790.1p  transcript_id AT1G16790.1  protein_id AT1G16790.1p  transcript_id AT1G16790.1  
At1g16800	chr1:005745523	0.0	C/5745523-5745545,5745659-5746707,5746798-5747036,5747201-5747326,5747405-5747470,5747551-5748467,5748604-5749006,5749275-5750446,5750507-5750777,5751105-5751226,5751604-5751655,5751783-5751891,5751991-5752180,5752391-5752569,5752983-5753056,5753165-5753215,5753865-5754011,5754291-5754407,5754611-5754995,5755136-5755263	AT1G16800.1 CDS  gene_syn F17F16.1, F17F16_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function poly(U) binding|GO:0008266|17511964|IDA  product tRNA-splicing endonuclease positive effector-related  note tRNA-splicing endonuclease positive effector-related; FUNCTIONS IN: poly(U) binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: tRNA-splicing endonuclease positive effector-related (TAIR:AT4G30100.1); Has 7446 Blast hits to 6395 proteins in 809 species: Archae - 130; Bacteria - 1032; Metazoa - 2551; Fungi - 897; Plants - 422; Viruses - 240; Other Eukaryotes - 2174 (source: NCBI BLink).  protein_id AT1G16800.1p  transcript_id AT1G16800.1  protein_id AT1G16800.1p  transcript_id AT1G16800.1  
At1g16810	chr1:005756150	0.0	W/5756150-5756297,5756408-5756694	AT1G16810.1 CDS  gene_syn F17F16.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 275 Blast hits to 274 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 62; Plants - 34; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G16810.1p  transcript_id AT1G16810.1  protein_id AT1G16810.1p  transcript_id AT1G16810.1  
At1g16810	chr1:005756150	0.0	W/5756150-5756297,5756408-5756694	AT1G16810.2 CDS  gene_syn F17F16.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 275 Blast hits to 274 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 62; Plants - 34; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G16810.2p  transcript_id AT1G16810.2  protein_id AT1G16810.2p  transcript_id AT1G16810.2  
At1g16820	chr1:005757199	0.0	C/5757199-5757213,5757308-5757397,5757481-5757559,5758367-5758464	AT1G16820.1 CDS  gene_syn F17F16.15  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  product vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related  note vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793); BEST Arabidopsis thaliana protein match is: VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A); ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism (TAIR:AT1G78900.2); Has 101 Blast hits to 101 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G16820.1p  transcript_id AT1G16820.1  protein_id AT1G16820.1p  transcript_id AT1G16820.1  
At1g16825	chr1:005758877	0.0	W/5758877-5759043,5759650-5759791,5760071-5760140,5760252-5760340	AT1G16825.1 CDS  go_component endoplasmic reticulum|GO:0005783||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78895.1).  protein_id AT1G16825.1p  transcript_id AT1G16825.1  protein_id AT1G16825.1p  transcript_id AT1G16825.1  
At1g16830	chr1:005760793	0.0	W/5760793-5762619	AT1G16830.1 CDS  gene_syn F17F16.24  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEE40 (maternal effect embryo arrest 40) (TAIR:AT3G53700.1); Has 16848 Blast hits to 5324 proteins in 149 species: Archae - 2; Bacteria - 6; Metazoa - 176; Fungi - 119; Plants - 16112; Viruses - 0; Other Eukaryotes - 433 (source: NCBI BLink).  protein_id AT1G16830.1p  transcript_id AT1G16830.1  protein_id AT1G16830.1p  transcript_id AT1G16830.1  
At1g16840	chr1:005763111	0.0	C/5763111-5763190,5763579-5763984	AT1G16840.1 CDS  gene_syn F17F16.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16840.1p  transcript_id AT1G16840.1  protein_id AT1G16840.1p  transcript_id AT1G16840.1  
At1g16840	chr1:005763111	0.0	C/5763111-5763190,5763579-5763984	AT1G16840.3 CDS  gene_syn F17F16.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16840.3p  transcript_id AT1G16840.3  protein_id AT1G16840.3p  transcript_id AT1G16840.3  
At1g16840	chr1:005763111	0.0	C/5763111-5763190,5763579-5763984	AT1G16840.4 CDS  gene_syn F17F16.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16840.4p  transcript_id AT1G16840.4  protein_id AT1G16840.4p  transcript_id AT1G16840.4  
At1g16840	chr1:005763499	0.0	C/5763499-5763984	AT1G16840.2 CDS  gene_syn F17F16.27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16840.2p  transcript_id AT1G16840.2  protein_id AT1G16840.2p  transcript_id AT1G16840.2  
At1g16850	chr1:005765062	0.0	C/5765062-5765275,5765374-5765618	AT1G16850.1 CDS  gene_syn F17F16.17  go_component endomembrane system|GO:0012505||IEA  go_process response to salt stress|GO:0009651|17888165|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, leaf apex, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; Has 9 Blast hits to 9 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16850.1p  transcript_id AT1G16850.1  protein_id AT1G16850.1p  transcript_id AT1G16850.1  
At1g16858	chr1:005767516	0.0	W/5767516-5767593	AT1G16858.1 CDS  gene_syn CPuORF55, Conserved peptide upstream open reading frame 55  gene CPuORF55  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF55 represents a conserved upstream opening reading frame relative to major ORF AT1G16860.1  product CPuORF55 (Conserved peptide upstream open reading frame 55)  note Conserved peptide upstream open reading frame 55 (CPuORF55); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G16858.1p  transcript_id AT1G16858.1  protein_id AT1G16858.1p  transcript_id AT1G16858.1  
At1g16860	chr1:005768280	0.0	W/5768280-5769143,5769431-5769586,5769686-5769897,5769991-5770183	AT1G16860.1 CDS  gene_syn F17F16.16  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  product merozoite surface protein-related  note merozoite surface protein-related; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: balbiani ring 1-related / BR1-related (TAIR:AT1G78880.1); Has 506 Blast hits to 199 proteins in 70 species: Archae - 0; Bacteria - 16; Metazoa - 25; Fungi - 24; Plants - 85; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).  protein_id AT1G16860.1p  transcript_id AT1G16860.1  protein_id AT1G16860.1p  transcript_id AT1G16860.1  
At1g16870	chr1:005770964	0.0	C/5770964-5771075,5771245-5771417,5771489-5771575,5771692-5771946,5772027-5772238,5772446-5772612,5772721-5773157	AT1G16870.1 CDS  gene_syn F17F16.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial 28S ribosomal protein S29-related  note mitochondrial 28S ribosomal protein S29-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 184 Blast hits to 183 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 30; Plants - 19; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G16870.1p  transcript_id AT1G16870.1  protein_id AT1G16870.1p  transcript_id AT1G16870.1  
At1g16880	chr1:005773796	0.0	W/5773796-5773950,5774332-5774377,5774464-5774601,5774733-5774827,5774969-5775053,5775150-5775209,5775540-5775595,5775704-5775809,5775913-5775981,5776063-5776125	AT1G16880.1 CDS  gene_syn F17F16.13  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  product uridylyltransferase-related  note uridylyltransferase-related; INVOLVED IN: response to cold; LOCATED IN: chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT5G04740.1); Has 304 Blast hits to 276 proteins in 50 species: Archae - 0; Bacteria - 70; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G16880.1p  transcript_id AT1G16880.1  protein_id AT1G16880.1p  transcript_id AT1G16880.1  
At1g16880	chr1:005773796	0.0	W/5773796-5773950,5774332-5774377,5774464-5774601,5774733-5774827,5774969-5775053,5775150-5775272	AT1G16880.2 CDS  gene_syn F17F16.13  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  product uridylyltransferase-related  note uridylyltransferase-related; INVOLVED IN: response to cold; LOCATED IN: chloroplast thylakoid membrane, stromule, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT5G04740.1); Has 106 Blast hits to 106 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G16880.2p  transcript_id AT1G16880.2  protein_id AT1G16880.2p  transcript_id AT1G16880.2  
At1g16890	chr1:005776550	0.0	C/5776550-5776587,5776687-5776784,5776893-5776966,5777079-5777120,5777414-5777472,5777852-5777903	AT1G16890.1 CDS  gene_syn F17F16.19, UBC13B, UBC36, UBIQUITIN CONJUGATING ENZYME 13B, UBIQUITIN-CONJUGATING ENZYME 36  gene UBC36  function UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product ubiquitin-conjugating enzyme, putative  note UBIQUITIN-CONJUGATING ENZYME 36 (UBC36); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC35 (UBIQUITIN-CONJUGATING ENZYME 35); protein binding / ubiquitin-protein ligase (TAIR:AT1G78870.2); Has 7425 Blast hits to 7423 proteins in 305 species: Archae - 0; Bacteria - 2; Metazoa - 3670; Fungi - 1393; Plants - 1055; Viruses - 19; Other Eukaryotes - 1286 (source: NCBI BLink).  protein_id AT1G16890.1p  transcript_id AT1G16890.1  protein_id AT1G16890.1p  transcript_id AT1G16890.1  
At1g16890	chr1:005776550	0.0	C/5776550-5776587,5776687-5776784,5776893-5776966,5777079-5777120,5777414-5777472,5777852-5777938,5778062-5778089,5778292-5778327	AT1G16890.2 CDS  gene_syn F17F16.19, UBC13B, UBC36, UBIQUITIN CONJUGATING ENZYME 13B, UBIQUITIN-CONJUGATING ENZYME 36  gene UBC36  function UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product ubiquitin-conjugating enzyme, putative  note UBIQUITIN-CONJUGATING ENZYME 36 (UBC36); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC35 (UBIQUITIN-CONJUGATING ENZYME 35); protein binding / ubiquitin-protein ligase (TAIR:AT1G78870.2); Has 7661 Blast hits to 7656 proteins in 307 species: Archae - 0; Bacteria - 2; Metazoa - 3726; Fungi - 1457; Plants - 1104; Viruses - 19; Other Eukaryotes - 1353 (source: NCBI BLink).  protein_id AT1G16890.2p  transcript_id AT1G16890.2  protein_id AT1G16890.2p  transcript_id AT1G16890.2  
At1g16900	chr1:005779262	0.0	C/5779262-5779393,5779482-5779571,5779665-5779861,5780034-5780172,5780273-5780384,5780532-5780827,5780961-5781178,5781392-5781551,5781642-5781729,5782023-5782303	AT1G16900.1 CDS  gene_syn F17F16.20  function curculin-like (mannose-binding) lectin family protein, very low similarity to Ser Thr protein kinase GI:2598067 from (Zea mays); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_process GPI anchor biosynthetic process|GO:0006506||IEA  go_function sugar binding|GO:0005529||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product sugar binding / transferase, transferring glycosyl groups  note sugar binding / transferase, transferring glycosyl groups; FUNCTIONS IN: sugar binding, transferase activity, transferring glycosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: mannosyltransferase, putative (TAIR:AT5G14850.2); Has 604 Blast hits to 593 proteins in 135 species: Archae - 0; Bacteria - 14; Metazoa - 263; Fungi - 204; Plants - 50; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G16900.1p  transcript_id AT1G16900.1  protein_id AT1G16900.1p  transcript_id AT1G16900.1  
At1g16905	chr1:005782546	0.0	C/5782546-5783817	AT1G16905.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_function sugar binding|GO:0005529||IEA  go_process biological_process|GO:0008150||ND  product sugar binding  note sugar binding; FUNCTIONS IN: sugar binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: curculin-like (mannose-binding) lectin family protein (TAIR:AT1G78860.1); Has 1413 Blast hits to 1382 proteins in 73 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 0; Plants - 1385; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16905.1p  transcript_id AT1G16905.1  protein_id AT1G16905.1p  transcript_id AT1G16905.1  
At1g16910	chr1:005785373	0.0	W/5785373-5785867	AT1G16910.1 CDS  gene_syn F17F16.11, LIGHT SENSITIVE HYPOCOTYLS 8, LSH8  gene LSH8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product LSH8 (LIGHT SENSITIVE HYPOCOTYLS 8)  note LIGHT SENSITIVE HYPOCOTYLS 8 (LSH8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) (TAIR:AT1G78815.1); Has 185 Blast hits to 185 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16910.1p  transcript_id AT1G16910.1  protein_id AT1G16910.1p  transcript_id AT1G16910.1  
At1g16916	chr1:005786762	0.0	C/5786762-5786895,5786984-5787047	AT1G16916.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16916.1p  transcript_id AT1G16916.1  protein_id AT1G16916.1p  transcript_id AT1G16916.1  
At1g16920	chr1:005787489	0.0	C/5787489-5787918,5788927-5789147	AT1G16920.1 CDS  gene_syn ARABIDOPSIS RAB GTPASE HOMOLOG A1B, ATRABA1B, F17F16.26, RAB11  gene ATRABA1B  function small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking.  go_component vacuole|GO:0005773|14760709|IDA  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component trans-Golgi network|GO:0005802||NAS  go_process intracellular protein transport|GO:0006886|11756458|TAS  go_function GTP binding|GO:0005525|8843944|IDA  go_function GTP binding|GO:0005525||ISS  product ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding  note ARABIDOPSIS RAB GTPASE HOMOLOG A1B (ATRABA1B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: trans-Golgi network, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Ras small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding (TAIR:AT4G18800.1); Has 22613 Blast hits to 22572 proteins in 625 species: Archae - 19; Bacteria - 112; Metazoa - 12439; Fungi - 2938; Plants - 2070; Viruses - 19; Other Eukaryotes - 5016 (source: NCBI BLink).  protein_id AT1G16920.1p  transcript_id AT1G16920.1  protein_id AT1G16920.1p  transcript_id AT1G16920.1  
At1g16930	chr1:005789987	0.0	W/5789987-5790907,5791013-5791153,5791247-5791534	AT1G16930.1 CDS  gene_syn F17F16.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80470.1); Has 1475 Blast hits to 1440 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1473; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G16930.1p  transcript_id AT1G16930.1  protein_id AT1G16930.1p  transcript_id AT1G16930.1  
At1g16940	chr1:005791983	0.0	W/5791983-5792825,5792925-5793068,5793174-5793491	AT1G16940.1 CDS  gene_syn F17F16.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), WD40 repeat (InterPro:IPR001680), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G78750.1); Has 992 Blast hits to 975 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 971; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16940.1p  transcript_id AT1G16940.1  protein_id AT1G16940.1p  transcript_id AT1G16940.1  
At1g16950	chr1:005796083	0.0	W/5796083-5796364	AT1G16950.1 CDS  gene_syn F17F16.23  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G16950.1p  transcript_id AT1G16950.1  protein_id AT1G16950.1p  transcript_id AT1G16950.1  
At1g16960	chr1:005799998	0.0	W/5799998-5800031,5800162-5800284,5800360-5800482,5800560-5800624	AT1G16960.1 CDS  gene_syn F17F16.18  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53400.1); Has 231 Blast hits to 231 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 42; Plants - 47; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G16960.1p  transcript_id AT1G16960.1  protein_id AT1G16960.1p  transcript_id AT1G16960.1  
At1g16970	chr1:005801159	0.0	C/5801159-5801272,5801396-5801558,5801670-5801772,5801858-5801978,5802066-5802158,5802288-5802348,5802457-5802518,5802931-5803078,5803348-5803424,5803656-5803833,5804056-5804114,5804224-5804307,5804434-5804551,5804667-5804772,5805035-5805149,5805242-5805361,5805482-5805559,5805659-5805724	AT1G16970.1 CDS  gene_syn ARABIDOPSIS THALIANA KU70 HOMOLOG, ATKU70, F6I1.2, F6I1_2, KU70, KU70-LIKE PROTEIN  gene KU70  function Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity.  go_component nucleus|GO:0005634||IEA  go_component DNA-dependent protein kinase-DNA ligase 4 complex|GO:0005958||IEA  go_process telomere maintenance|GO:0000723|16396834|TAS  go_process DNA repair|GO:0006281|16396834|TAS  go_process response to heat|GO:0009408|18515112|IEP  go_function double-stranded DNA binding|GO:0003690|16396834|IDA  go_function protein binding|GO:0005515|12148535|IPI  go_function protein binding|GO:0005515|16396834|IPI  product KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG); double-stranded DNA binding / protein binding  note ARABIDOPSIS THALIANA KU70 HOMOLOG (KU70); FUNCTIONS IN: protein binding, double-stranded DNA binding; INVOLVED IN: DNA repair, response to heat, telomere maintenance; LOCATED IN: nucleus, DNA-dependent protein kinase-DNA ligase 4 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA-binding SAP (InterPro:IPR003034), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), DNA helicase, ATP-dependent, Ku70 subunit (InterPro:IPR006165); Has 373 Blast hits to 365 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 170; Fungi - 133; Plants - 28; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G16970.1p  transcript_id AT1G16970.1  protein_id AT1G16970.1p  transcript_id AT1G16970.1  
At1g16980	chr1:005807311	0.0	W/5807311-5807449,5807526-5807626,5807974-5808359,5808455-5808569,5808659-5808760,5808846-5808996,5809079-5809167,5809268-5809316,5809417-5809517,5809615-5809802,5809888-5810005,5810113-5810271,5810346-5810468,5810553-5810640,5810721-5810851,5810967-5811065,5811162-5811488	AT1G16980.1 CDS  gene_syn ATTPS2, F6I1.1, F6I1_1, TPS2, TREHALOSE -6-PHOSPHATASE SYNTHASE S2  gene ATTPS2  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.  go_component cellular_component|GO:0005575||ND  go_process trehalose biosynthetic process|GO:0005992|11701378|ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11701378|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS2; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups  note ATTPS2; FUNCTIONS IN: transferase activity, transferring glycosyl groups, alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; INVOLVED IN: trehalose biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Alpha,alpha-trehalose-phosphate synthase (InterPro:IPR012766), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS3; alpha,alpha-trehalose-phosphate synthase (UDP-forming) (TAIR:AT1G17000.1); Has 2188 Blast hits to 2143 proteins in 595 species: Archae - 31; Bacteria - 1016; Metazoa - 97; Fungi - 469; Plants - 201; Viruses - 0; Other Eukaryotes - 374 (source: NCBI BLink).  protein_id AT1G16980.1p  transcript_id AT1G16980.1  protein_id AT1G16980.1p  transcript_id AT1G16980.1  
At1g17000	chr1:005812728	0.0	W/5812728-5812863,5813008-5813045,5813142-5813527,5813626-5813740,5813834-5813935,5814024-5814174,5814262-5814350,5814436-5814484,5814582-5814682,5814781-5814968,5815070-5815187,5815268-5815425,5815545-5815667,5815755-5815842,5815928-5816058,5816205-5816303,5816384-5816662	AT1G17000.1 CDS  gene_syn ATTPS3, F20D23.30, F20D23_30, TPS3, TREHALOSE -6-PHOSPHATASE SYNTHASE S3  gene ATTPS3  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.  go_component cellular_component|GO:0005575||ND  go_process trehalose biosynthetic process|GO:0005992|11701378|ISS  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825|11701378|ISS  go_function alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity|GO:0003825||ISS  product ATTPS3; alpha,alpha-trehalose-phosphate synthase (UDP-forming)  note ATTPS3; FUNCTIONS IN: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity; INVOLVED IN: trehalose biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS2; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups (TAIR:AT1G16980.1); Has 2185 Blast hits to 2105 proteins in 592 species: Archae - 31; Bacteria - 1009; Metazoa - 97; Fungi - 473; Plants - 227; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT1G17000.1p  transcript_id AT1G17000.1  protein_id AT1G17000.1p  transcript_id AT1G17000.1  
At1g17010	chr1:005817667	0.0	W/5817667-5817924,5818149-5818396,5818482-5818809,5818932-5819183	AT1G17010.1 CDS  gene_syn F20D23.29, F20D23_29  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT1G17020.1); Has 5680 Blast hits to 5655 proteins in 670 species: Archae - 0; Bacteria - 682; Metazoa - 105; Fungi - 570; Plants - 3081; Viruses - 0; Other Eukaryotes - 1242 (source: NCBI BLink).  protein_id AT1G17010.1p  transcript_id AT1G17010.1  protein_id AT1G17010.1p  transcript_id AT1G17010.1  
At1g17020	chr1:005820258	0.0	W/5820258-5820512,5820767-5821014,5821094-5821424,5821499-5821741	AT1G17020.1 CDS  gene_syn ATSRG1, F20D23.28, F20D23_28, SENESCENCE-RELATED GENE 1, SRG1  gene SRG1  function Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.  go_component cellular_component|GO:0005575||ND  go_process flavonoid biosynthetic process|GO:0009813||ISS  go_process organ senescence|GO:0010260|8883383|IEP  go_function oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor|GO:0016682|8883383|ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note SENESCENCE-RELATED GENE 1 (SRG1); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor; INVOLVED IN: organ senescence, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: C senescence, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT1G17010.1); Has 5881 Blast hits to 5857 proteins in 684 species: Archae - 0; Bacteria - 741; Metazoa - 120; Fungi - 625; Plants - 3091; Viruses - 0; Other Eukaryotes - 1304 (source: NCBI BLink).  protein_id AT1G17020.1p  transcript_id AT1G17020.1  protein_id AT1G17020.1p  transcript_id AT1G17020.1  
At1g17030	chr1:005822487	0.0	W/5822487-5822757,5822958-5823544,5823680-5824195,5824290-5824424	AT1G17030.1 CDS  gene_syn F20D23.27, F20D23_27  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G17030.1p  transcript_id AT1G17030.1  protein_id AT1G17030.1p  transcript_id AT1G17030.1  
At1g17040	chr1:005825109	0.0	W/5825109-5825267,5825483-5825674,5825761-5825970,5826056-5826208,5826297-5826461,5826571-5826750,5826845-5827113,5827183-5827345,5827442-5827779,5827852-5827929,5828038-5828056	AT1G17040.1 CDS  gene_syn ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, ATSHA, F20D23.26, F20D23_26, SH2 DOMAIN PROTEIN A, SHA, STAT-TYPE LINKER-SH2 DOMAIN FACTOR A, STATLA  gene SHA  function Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process signal transduction|GO:0007165||IEA  go_function transcription factor activity|GO:0003700||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  product SHA (SH2 DOMAIN PROTEIN A); protein binding / signal transducer/ transcription factor  note SH2 DOMAIN PROTEIN A (SHA); FUNCTIONS IN: protein binding, transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SHB (SH2 DOMAIN PROTEIN B); protein binding / signal transducer/ transcription factor (TAIR:AT1G78540.1); Has 268 Blast hits to 264 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G17040.1p  transcript_id AT1G17040.1  protein_id AT1G17040.1p  transcript_id AT1G17040.1  
At1g17050	chr1:005829289	0.0	W/5829289-5829508,5829847-5829971,5830051-5830178,5830274-5830377,5830459-5830586,5830667-5831215	AT1G17050.1 CDS  gene_syn F20D23.25, F20D23_25, SPS2, Solanesyl diphosphate synthase 2  gene SPS2  function Encodes a protein with solanesyl diphosphate synthase activity.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|15653808|IDA  go_process ubiquinone biosynthetic process|GO:0006744|15653808|IGI  go_function trans-octaprenyltranstransferase activity|GO:0050347|15653808|IGI  product SPS2 (Solanesyl diphosphate synthase 2); trans-octaprenyltranstransferase  note Solanesyl diphosphate synthase 2 (SPS2); FUNCTIONS IN: trans-octaprenyltranstransferase activity; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: SPS1 (solanesyl diphosphate synthase 1); trans-octaprenyltranstransferase (TAIR:AT1G78510.1); Has 11562 Blast hits to 11544 proteins in 1668 species: Archae - 213; Bacteria - 4920; Metazoa - 354; Fungi - 438; Plants - 258; Viruses - 0; Other Eukaryotes - 5379 (source: NCBI BLink).  protein_id AT1G17050.1p  transcript_id AT1G17050.1  protein_id AT1G17050.1p  transcript_id AT1G17050.1  
At1g17060	chr1:005832282	0.0	C/5832282-5832707,5832798-5832946,5833075-5833184,5833267-5833511,5834295-5834512,5834973-5835255	AT1G17060.1 CDS  gene_syn CYP72C1, CYTOCHROME P450 72C1, F20D23.24, F20D23_24, SOB7, SUPPRESSOR OF PHYB-4 7  gene CYP72C1  function Encodes a protein with similarity to other cytochrome P450 s and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls.  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_process response to light stimulus|GO:0009416|15773851|IGI  go_process unidimensional cell growth|GO:0009826|15773850|IMP  go_process brassinosteroid metabolic process|GO:0016131|15689343|IMP  go_process brassinosteroid metabolic process|GO:0016131|15773851|IMP  go_function oxygen binding|GO:0019825||ISS  product CYP72C1 (CYTOCHROME P450 72C1); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYTOCHROME P450 72C1 (CYP72C1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to light stimulus, unidimensional cell growth, brassinosteroid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP72A15; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G14690.1); Has 20425 Blast hits to 19968 proteins in 1059 species: Archae - 38; Bacteria - 1613; Metazoa - 10062; Fungi - 3313; Plants - 4662; Viruses - 3; Other Eukaryotes - 734 (source: NCBI BLink).  protein_id AT1G17060.1p  transcript_id AT1G17060.1  protein_id AT1G17060.1p  transcript_id AT1G17060.1  
At1g17070	chr1:005837653	0.0	W/5837653-5840202	AT1G17070.1 CDS  gene_syn F20D23.23, F20D23_23  go_component intracellular|GO:0005622||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component intracellular|GO:0005622||ISS  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product D111/G-patch domain-containing protein  note D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein 11 (InterPro:IPR014809), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT2G42330.2); Has 979 Blast hits to 958 proteins in 159 species: Archae - 2; Bacteria - 0; Metazoa - 613; Fungi - 98; Plants - 108; Viruses - 1; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G17070.1p  transcript_id AT1G17070.1  protein_id AT1G17070.1p  transcript_id AT1G17070.1  
At1g17080	chr1:005840458	0.0	C/5840458-5840517,5840623-5840740,5840833-5840911,5841329-5841536	AT1G17080.1 CDS  gene_syn F20D23.22, F20D23_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53560.1); Has 71 Blast hits to 71 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17080.1p  transcript_id AT1G17080.1  protein_id AT1G17080.1p  transcript_id AT1G17080.1  
At1g17090	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.1 CDS  gene_syn F20D23.31, F20D23_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17090.1p  transcript_id AT1G17090.1  protein_id AT1G17090.1p  transcript_id AT1G17090.1  
At1g17090	chr1:005842464	0.0	C/5842464-5842745	AT1G17090.2 CDS  gene_syn F20D23.31, F20D23_31  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages.  protein_id AT1G17090.2p  transcript_id AT1G17090.2  protein_id AT1G17090.2p  transcript_id AT1G17090.2  
At1g17100	chr1:005844766	0.0	W/5844766-5845034,5845110-5845539	AT1G17100.1 CDS  gene_syn F20D23.21, F20D23_21  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product SOUL heme-binding family protein  note SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G78450.1); Has 1175 Blast hits to 1144 proteins in 91 species: Archae - 10; Bacteria - 83; Metazoa - 242; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).  protein_id AT1G17100.1p  transcript_id AT1G17100.1  protein_id AT1G17100.1p  transcript_id AT1G17100.1  
At1g17110	chr1:005845816	0.0	C/5845816-5846362,5846449-5846510,5846592-5846804,5846905-5846989,5847070-5847227,5847317-5847440,5847557-5847719,5847810-5847895,5848031-5848119,5848212-5848339,5848414-5848512,5848603-5848780,5848906-5849299,5849441-5849889	AT1G17110.1 CDS  gene_syn F20D23.20, F20D23_20, UBIQUITIN-SPECIFIC PROTEASE 15, UBP15  gene UBP15  function Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant.  go_component nucleus|GO:0005634|18485060|IDA  go_component cytoplasm|GO:0005737|18485060|IDA  go_process cell proliferation|GO:0008283|18485060|IMP  go_process flower development|GO:0009908|18485060|IMP  go_process fruit development|GO:0010154|18485060|IMP  go_process protein deubiquitination|GO:0016579|18485060|IDA  go_process root development|GO:0048364|18485060|IMP  go_process leaf development|GO:0048366|18485060|IMP  go_process shoot development|GO:0048367|18485060|IMP  go_function ubiquitin-specific protease activity|GO:0004843|18485060|IDA  go_function ubiquitin-specific protease activity|GO:0004843||ISS  product UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15); ubiquitin-specific protease  note UBIQUITIN-SPECIFIC PROTEASE 15 (UBP15); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17); cysteine-type endopeptidase/ ubiquitin thiolesterase/ zinc ion binding (TAIR:AT5G65450.1); Has 6272 Blast hits to 5584 proteins in 194 species: Archae - 0; Bacteria - 42; Metazoa - 3625; Fungi - 807; Plants - 579; Viruses - 7; Other Eukaryotes - 1212 (source: NCBI BLink).  protein_id AT1G17110.1p  transcript_id AT1G17110.1  protein_id AT1G17110.1p  transcript_id AT1G17110.1  
At1g17120	chr1:005851964	0.0	W/5851964-5853736	AT1G17120.1 CDS  gene_syn CAT8, CATIONIC AMINO ACID TRANSPORTER 8, F20D23.19, F20D23_19  gene CAT8  function Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_component plasma membrane|GO:0005886|15377779|IDA  go_component intracellular membrane-bounded organelle|GO:0043231|15377779|IDA  go_function basic amino acid transmembrane transporter activity|GO:0015174|15377779|IGI  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product CAT8 (CATIONIC AMINO ACID TRANSPORTER 8); basic amino acid transmembrane transporter/ cationic amino acid transmembrane transporter  note CATIONIC AMINO ACID TRANSPORTER 8 (CAT8); FUNCTIONS IN: basic amino acid transmembrane transporter activity, cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: intracellular membrane-bounded organelle, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: CAT5 (CATIONIC AMINO ACID TRANSPORTER 5); L-glutamate transmembrane transporter/ L-lysine transmembrane transporter/ arginine transmembrane transporter/ cationic amino acid transmembrane transporter (TAIR:AT2G34960.1); Has 17301 Blast hits to 17221 proteins in 1266 species: Archae - 299; Bacteria - 12960; Metazoa - 1598; Fungi - 1250; Plants - 195; Viruses - 0; Other Eukaryotes - 999 (source: NCBI BLink).  protein_id AT1G17120.1p  transcript_id AT1G17120.1  protein_id AT1G17120.1p  transcript_id AT1G17120.1  
At1g17130	chr1:005854264	0.0	W/5854264-5854461,5854865-5855035,5855138-5855272,5855415-5855480,5855731-5855781,5855878-5856003,5856110-5856173,5856267-5856472	AT1G17130.2 CDS  gene_syn F20D23.18, F20D23_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cell cycle control protein-related  note cell cycle control protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT2G32050.1); Has 1133 Blast hits to 1063 proteins in 189 species: Archae - 3; Bacteria - 33; Metazoa - 413; Fungi - 249; Plants - 84; Viruses - 5; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT1G17130.2p  transcript_id AT1G17130.2  protein_id AT1G17130.2p  transcript_id AT1G17130.2  
At1g17130	chr1:005854264	0.0	W/5854264-5854461,5854886-5855035,5855138-5855272,5855415-5855480,5855731-5855781,5855878-5856003,5856110-5856173,5856267-5856472	AT1G17130.1 CDS  gene_syn F20D23.18, F20D23_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cell cycle control protein-related  note cell cycle control protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT2G32050.1); Has 1122 Blast hits to 1057 proteins in 188 species: Archae - 0; Bacteria - 32; Metazoa - 407; Fungi - 252; Plants - 84; Viruses - 5; Other Eukaryotes - 342 (source: NCBI BLink).  protein_id AT1G17130.1p  transcript_id AT1G17130.1  protein_id AT1G17130.1p  transcript_id AT1G17130.1  
At1g17140	chr1:005856740	0.0	C/5856740-5857760,5857848-5857861	AT1G17140.1 CDS  gene_syn F20D23.32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product tropomyosin-related  note tropomyosin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78430.1); Has 43510 Blast hits to 22998 proteins in 1377 species: Archae - 572; Bacteria - 4160; Metazoa - 22917; Fungi - 3693; Plants - 1661; Viruses - 138; Other Eukaryotes - 10369 (source: NCBI BLink).  protein_id AT1G17140.1p  transcript_id AT1G17140.1  protein_id AT1G17140.1p  transcript_id AT1G17140.1  
At1g17140	chr1:005856740	0.0	C/5856740-5857760,5857848-5857861	AT1G17140.2 CDS  gene_syn F20D23.32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product tropomyosin-related  note tropomyosin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78430.1); Has 43510 Blast hits to 22998 proteins in 1377 species: Archae - 572; Bacteria - 4160; Metazoa - 22917; Fungi - 3693; Plants - 1661; Viruses - 138; Other Eukaryotes - 10369 (source: NCBI BLink).  protein_id AT1G17140.2p  transcript_id AT1G17140.2  protein_id AT1G17140.2p  transcript_id AT1G17140.2  
At1g17145	chr1:005860351	0.0	C/5860351-5860689,5860772-5860838,5861173-5861239,5861336-5861486,5861585-5861666,5861756-5861801,5861890-5861941,5862038-5862241	AT1G17145.1 CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G78420.1); Has 150 Blast hits to 150 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 105; Plants - 36; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G17145.1p  transcript_id AT1G17145.1  protein_id AT1G17145.1p  transcript_id AT1G17145.1  
At1g17147	chr1:005863654	0.0	C/5863654-5863950	AT1G17147.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G78410.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17147.1p  transcript_id AT1G17147.1  protein_id AT1G17147.1p  transcript_id AT1G17147.1  
At1g17150	chr1:005865707	0.0	W/5865707-5865856,5866190-5866498,5866658-5867176,5867265-5867495	AT1G17150.1 CDS  gene_syn F20D23.15, F20D23_15  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G26620.1); Has 2311 Blast hits to 2303 proteins in 288 species: Archae - 2; Bacteria - 379; Metazoa - 8; Fungi - 979; Plants - 884; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G17150.1p  transcript_id AT1G17150.1  protein_id AT1G17150.1p  transcript_id AT1G17150.1  
At1g17160	chr1:005867678	0.0	W/5867678-5868340,5868534-5868719,5868845-5869040,5869121-5869215	AT1G17160.1 CDS  gene_syn F20D23.14, F20D23_14  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_process D-ribose metabolic process|GO:0006014||IEA  go_process D-ribose catabolic process|GO:0019303||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, D-ribose catabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); Has 14507 Blast hits to 14496 proteins in 1450 species: Archae - 247; Bacteria - 9613; Metazoa - 363; Fungi - 201; Plants - 306; Viruses - 0; Other Eukaryotes - 3777 (source: NCBI BLink).  protein_id AT1G17160.1p  transcript_id AT1G17160.1  protein_id AT1G17160.1p  transcript_id AT1G17160.1  
At1g17160	chr1:005867678	0.0	W/5867678-5868340,5868534-5868719,5868845-5869040,5869153-5869175	AT1G17160.2 CDS  gene_syn F20D23.14, F20D23_14  go_component chloroplast|GO:0009507|18431481|IDA  go_process D-ribose metabolic process|GO:0006014||IEA  go_function ribokinase activity|GO:0004747||IEA  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); Has 12078 Blast hits to 12073 proteins in 1389 species: Archae - 206; Bacteria - 8076; Metazoa - 339; Fungi - 164; Plants - 283; Viruses - 0; Other Eukaryotes - 3010 (source: NCBI BLink).  protein_id AT1G17160.2p  transcript_id AT1G17160.2  protein_id AT1G17160.2p  transcript_id AT1G17160.2  
At1g17170	chr1:005869895	0.0	W/5869895-5870209,5870350-5870691	AT1G17170.1 CDS  gene_syn ATGSTU24, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, F20D23.13, F20D23_13, GLUTATHIONE S-TRANSFERASE TAU 24, GST  gene ATGSTU24  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_function glutathione binding|GO:0043295|15159623|IDA  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24); glutathione binding / glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 24 (ATGSTU24); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: response to cyclopentenone, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25); glutathione transferase (TAIR:AT1G17180.1); Has 4210 Blast hits to 4207 proteins in 756 species: Archae - 0; Bacteria - 1783; Metazoa - 554; Fungi - 84; Plants - 1077; Viruses - 0; Other Eukaryotes - 712 (source: NCBI BLink).  protein_id AT1G17170.1p  transcript_id AT1G17170.1  protein_id AT1G17170.1p  transcript_id AT1G17170.1  
At1g17180	chr1:005872208	0.0	W/5872208-5872522,5872608-5872958	AT1G17180.1 CDS  gene_syn ATGSTU25, F20D23.12, F20D23_12, GLUTATHIONE S-TRANSFERASE TAU 25  gene ATGSTU25  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25); glutathione transferase  note GLUTATHIONE S-TRANSFERASE TAU 25 (ATGSTU25); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cyclopentenone, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24); glutathione binding / glutathione transferase (TAIR:AT1G17170.1); Has 4213 Blast hits to 4199 proteins in 744 species: Archae - 0; Bacteria - 1883; Metazoa - 501; Fungi - 97; Plants - 1056; Viruses - 0; Other Eukaryotes - 676 (source: NCBI BLink).  protein_id AT1G17180.1p  transcript_id AT1G17180.1  protein_id AT1G17180.1p  transcript_id AT1G17180.1  
At1g17190	chr1:005875452	0.0	W/5875452-5875769,5876031-5876375	AT1G17190.1 CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26, ATGSTU26, F20D23.11, F20D23_11, GLUTATHIONE S-TRANSFERASE TAU 26, GSTU26  gene ATGSTU26  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_process response to cold|GO:0009409|16538523|IEP  go_process response to herbicide|GO:0009635|16538523|IEP  go_function glutathione transferase activity|GO:0004364|16538523|IDA  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26 (ATGSTU26); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to herbicide, response to cold, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25); glutathione transferase (TAIR:AT1G17180.1); Has 3642 Blast hits to 3639 proteins in 732 species: Archae - 0; Bacteria - 1663; Metazoa - 360; Fungi - 77; Plants - 1038; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).  protein_id AT1G17190.1p  transcript_id AT1G17190.1  protein_id AT1G17190.1p  transcript_id AT1G17190.1  
At1g17200	chr1:005878493	0.0	W/5878493-5878710,5879397-5879517,5879596-5879871	AT1G17200.1 CDS  gene_syn F20D23.10, F20D23_10  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane family protein  note integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane family protein (TAIR:AT3G14380.1); Has 307 Blast hits to 307 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 307; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17200.1p  transcript_id AT1G17200.1  protein_id AT1G17200.1p  transcript_id AT1G17200.1  
At1g17210	chr1:005880502	0.0	C/5880502-5880573,5880666-5880916,5881007-5882780,5882861-5883195,5883510-5883636,5884129-5884294,5884506-5884657	AT1G17210.1 CDS  gene_syn F20D23.9, F20D23_9  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  product zinc ion binding  note zinc ion binding; FUNCTIONS IN: zinc ion binding; LOCATED IN: cytosol, nucleus, phragmoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC-like (InterPro:IPR012935), Proteinase inhibitor I32, inhibitor of apoptosis (InterPro:IPR001370); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G48950.1); Has 388 Blast hits to 192 proteins in 68 species: Archae - 2; Bacteria - 7; Metazoa - 100; Fungi - 38; Plants - 41; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G17210.1p  transcript_id AT1G17210.1  protein_id AT1G17210.1p  transcript_id AT1G17210.1  
At1g17220	chr1:005885383	0.0	W/5885383-5886924,5887046-5887078,5887261-5887374,5887544-5887693,5887764-5887862,5887952-5888014,5888297-5888452,5888553-5888618,5888792-5889028,5889131-5889406,5889669-5889857,5890010-5890165	AT1G17220.1 CDS  gene_syn F20D23.8, F20D23_8, FUG1, fu-gaeri1  gene FUG1  function Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component chloroplast|GO:0009507|17416734|IDA  go_process translational initiation|GO:0006413|17416734|IGI  go_function translation initiation factor activity|GO:0003743|17416734|IGI  go_function translation initiation factor activity|GO:0003743||ISS  product FUG1 (fu-gaeri1); translation initiation factor  note fu-gaeri1 (FUG1); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF-2, N-terminal (InterPro:IPR006847), Initiation factor 2 (InterPro:IPR000178), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: translation initiation factor IF-2, mitochondrial, putative (TAIR:AT4G11160.1); Has 43008 Blast hits to 42922 proteins in 3070 species: Archae - 803; Bacteria - 23610; Metazoa - 1793; Fungi - 1492; Plants - 638; Viruses - 3; Other Eukaryotes - 14669 (source: NCBI BLink).  protein_id AT1G17220.1p  transcript_id AT1G17220.1  protein_id AT1G17220.1p  transcript_id AT1G17220.1  
At1g17230	chr1:005891375	0.0	W/5891375-5894288,5894368-5894751,5894848-5894855	AT1G17230.1 CDS  gene_syn F20D23.7, F20D23_7  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT5G63930.1); Has 176088 Blast hits to 101849 proteins in 3330 species: Archae - 85; Bacteria - 13785; Metazoa - 67600; Fungi - 7642; Plants - 63415; Viruses - 431; Other Eukaryotes - 23130 (source: NCBI BLink).  protein_id AT1G17230.1p  transcript_id AT1G17230.1  protein_id AT1G17230.1p  transcript_id AT1G17230.1  
At1g17235	chr1:005895351	0.0	W/5895351-5895710	AT1G17235.1 CDS  gene_syn ROTUNDIFOLIA LIKE 11, RTFL11  gene RTFL11  function This gene is predicted to encode a small protein with a DVL domain found in the DVL / RTFL protein family. Over-expression analyses using truncated versions of a related family member, ROT4, suggest that the DVL / RTF domain is involved in regulating cell proliferation.  go_component cellular_component|GO:0005575||ND  go_process regulation of cell proliferation|GO:0042127|15125775|ISS  go_function molecular_function|GO:0003674||ND  product RTFL11 (ROTUNDIFOLIA LIKE 11)  note ROTUNDIFOLIA LIKE 11 (RTFL11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of cell proliferation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17235.1p  transcript_id AT1G17235.1  protein_id AT1G17235.1p  transcript_id AT1G17235.1  
At1g17240	chr1:005896528	0.0	C/5896528-5898717	AT1G17240.1 CDS  gene_syn AtRLP2, F20D23.6, F20D23_6, Receptor Like Protein 2  gene AtRLP2  go_process signal transduction|GO:0007165|11751054|IC  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP2 (Receptor Like Protein 2); protein binding / protein kinase  note Receptor Like Protein 2 (AtRLP2); FUNCTIONS IN: protein binding, protein kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: stem, sperm cell, root, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G72300.1); Has 57036 Blast hits to 17883 proteins in 779 species: Archae - 38; Bacteria - 4104; Metazoa - 16790; Fungi - 784; Plants - 30572; Viruses - 2; Other Eukaryotes - 4746 (source: NCBI BLink).  protein_id AT1G17240.1p  transcript_id AT1G17240.1  protein_id AT1G17240.1p  transcript_id AT1G17240.1  
At1g17255	chr1:005899994	0.0	W/5899994-5903619	AT1G17255.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G17250  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G17255.1  
At1g17250	chr1:005901169	0.0	C/5901169-5903439	AT1G17250.1 CDS  gene_syn AtRLP3, F20D23.5, F20D23_5, Receptor Like Protein 3  gene AtRLP3  go_process signal transduction|GO:0007165|11751054|IC  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP3 (Receptor Like Protein 3); protein binding / protein kinase  note Receptor Like Protein 3 (AtRLP3); FUNCTIONS IN: protein binding, protein kinase activity; INVOLVED IN: signal transduction; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: AtRLP2 (Receptor Like Protein 2); protein binding / protein kinase (TAIR:AT1G17240.1); Has 50877 Blast hits to 16307 proteins in 715 species: Archae - 34; Bacteria - 2660; Metazoa - 13924; Fungi - 543; Plants - 29554; Viruses - 2; Other Eukaryotes - 4160 (source: NCBI BLink).  protein_id AT1G17250.1p  transcript_id AT1G17250.1  protein_id AT1G17250.1p  transcript_id AT1G17250.1  
At1g17260	chr1:005904058	0.0	W/5904058-5904123,5904211-5904330,5904418-5904516,5904606-5904743,5904840-5904974,5905065-5905244,5905343-5905549,5905651-5905770,5905892-5906011,5906100-5906222,5906336-5906440,5906566-5906710,5906825-5906986,5907076-5907314,5907477-5907509,5907601-5907682,5907766-5907926,5908009-5908182,5908277-5908459,5908560-5908714,5908802-5908898	AT1G17260.1 CDS  gene_syn AHA10, Autoinhibited H(+)-ATPase isoform 10, F20D23.4, F20D23_4  gene AHA10  function belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification process  go_component chloroplast|GO:0009507|15028209|IDA  go_process vacuole organization|GO:0007033|15695592|IMP  go_process vacuolar acidification|GO:0007035|15695592|IMP  go_process proanthocyanidin biosynthetic process|GO:0010023|15695592|IMP  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662|7969026|ISS  go_function ATPase activity|GO:0016887||ISS  go_function cation-transporting ATPase activity|GO:0019829|7969026|ISS  product AHA10 (Autoinhibited H(+)-ATPase isoform 10); ATPase/ ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / cation-transporting ATPase  note Autoinhibited H(+)-ATPase isoform 10 (AHA10); FUNCTIONS IN: ATPase activity, cation-transporting ATPase activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: vacuole organization, proanthocyanidin biosynthetic process, vacuolar acidification; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: AHA4; ATPase/ hydrogen-exporting ATPase, phosphorylative mechanism (TAIR:AT3G47950.1); Has 21164 Blast hits to 18613 proteins in 1822 species: Archae - 419; Bacteria - 11734; Metazoa - 3272; Fungi - 1642; Plants - 1078; Viruses - 3; Other Eukaryotes - 3016 (source: NCBI BLink).  protein_id AT1G17260.1p  transcript_id AT1G17260.1  protein_id AT1G17260.1p  transcript_id AT1G17260.1  
At1g17270	chr1:005909443	0.0	C/5909443-5909619,5909812-5910061,5910357-5911624	AT1G17270.1 CDS  gene_syn F20D23.3, F20D23_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50420.1); Has 68 Blast hits to 68 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G17270.1p  transcript_id AT1G17270.1  protein_id AT1G17270.1p  transcript_id AT1G17270.1  
At1g17275	chr1:005912053	0.0	W/5912053-5915313	AT1G17275.1 mRNA_TE_gene  pseudo  gene_syn F20D23.2, F20D23_2  note Transposable element gene, Mutator-like transposase family, has a 5.8e-31 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)  
At1g17277	chr1:005915644	0.0	C/5915644-5916212	AT1G17277.1 mRNA_TE_gene  pseudo  note Transposable element gene, similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G78355.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Zinc finger, GRF-type; (InterPro:IPR010666)  
At1g17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.1 CDS  gene_syn F20D23.1, F20D23_1, UBC34, ubiquitin-conjugating enzyme 34  gene UBC34  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC34 (ubiquitin-conjugating enzyme 34); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 34 (UBC34); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC33 (ubiquitin-conjugating enzyme 33); ubiquitin-protein ligase (TAIR:AT5G50430.2); Has 5548 Blast hits to 5545 proteins in 288 species: Archae - 0; Bacteria - 0; Metazoa - 2617; Fungi - 1060; Plants - 889; Viruses - 16; Other Eukaryotes - 966 (source: NCBI BLink).  protein_id AT1G17280.1p  transcript_id AT1G17280.1  protein_id AT1G17280.1p  transcript_id AT1G17280.1  
At1g17280	chr1:005917146	0.0	C/5917146-5917422,5917603-5917694,5917859-5917886,5917964-5918003,5918088-5918149,5918250-5918313,5918396-5918434,5918848-5918902,5919106-5919162	AT1G17280.2 CDS  gene_syn F20D23.1, F20D23_1, UBC34, ubiquitin-conjugating enzyme 34  gene UBC34  go_component cellular_component|GO:0005575||ND  go_process ubiquitin-dependent protein catabolic process|GO:0006511|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16339806|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product UBC34 (ubiquitin-conjugating enzyme 34); ubiquitin-protein ligase  note ubiquitin-conjugating enzyme 34 (UBC34); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: UBC33 (ubiquitin-conjugating enzyme 33); ubiquitin-protein ligase (TAIR:AT5G50430.2); Has 5548 Blast hits to 5545 proteins in 288 species: Archae - 0; Bacteria - 0; Metazoa - 2617; Fungi - 1060; Plants - 889; Viruses - 16; Other Eukaryotes - 966 (source: NCBI BLink).  protein_id AT1G17280.2p  transcript_id AT1G17280.2  protein_id AT1G17280.2p  transcript_id AT1G17280.2  
At1g17285	chr1:005920895	0.0	W/5920895-5921112,5921218-5921287	AT1G17285.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17300.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17285.1p  transcript_id AT1G17285.1  protein_id AT1G17285.1p  transcript_id AT1G17285.1  
At1g17290	chr1:005922771	0.0	W/5922771-5922992,5923592-5923642,5923721-5923771,5923860-5923925,5924003-5924064,5924151-5924229,5924307-5924411,5924500-5924610,5924739-5924876,5924972-5925167,5925261-5925415,5925526-5925600,5925681-5925884,5925977-5926093	AT1G17290.1 CDS  gene_syn ALANINE AMINOTRANSFERAS, AlaAT1, T13M22.3, T13M22_3  gene AlaAT1  function Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxia  go_component mitochondrion|GO:0005739|17137349|IDA  go_component mitochondrion|GO:0005739|18385124|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process response to cadmium ion|GO:0046686|17075075|IEP  go_function ATP binding|GO:0005524|17137349|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process response to hypoxia|GO:0001666|17319845|IEP  go_process L-alanine catabolic process, by transamination|GO:0019481|17319845|IMP  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|17319845|IDA  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021||ISS  product AlaAT1 (ALANINE AMINOTRANSFERAS); ATP binding / L-alanine:2-oxoglutarate aminotransferase  note ALANINE AMINOTRANSFERAS (AlaAT1); FUNCTIONS IN: L-alanine:2-oxoglutarate aminotransferase activity, ATP binding; INVOLVED IN: response to cadmium ion, response to hypoxia, L-alanine catabolic process, by transamination; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: ALAAT2 (ALANINE AMINOTRANSFERASE 2); ATP binding / L-alanine:2-oxoglutarate aminotransferase (TAIR:AT1G72330.1); Has 17405 Blast hits to 17399 proteins in 1647 species: Archae - 469; Bacteria - 9945; Metazoa - 539; Fungi - 426; Plants - 913; Viruses - 0; Other Eukaryotes - 5113 (source: NCBI BLink).  protein_id AT1G17290.1p  transcript_id AT1G17290.1  protein_id AT1G17290.1p  transcript_id AT1G17290.1  
At1g17300	chr1:005926994	0.0	W/5926994-5927290,5927387-5927440	AT1G17300.1 CDS  gene_syn T13M22.4, T13M22_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17285.1); Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17300.1p  transcript_id AT1G17300.1  protein_id AT1G17300.1p  transcript_id AT1G17300.1  
At1g17310	chr1:005928014	0.0	C/5928014-5928667	AT1G17310.1 CDS  gene_syn T13M22.2, T13M22_2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product MADS-box protein (AGL100)  note MADS-box protein (AGL100); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box protein (AGL60) (TAIR:AT1G72350.1); Has 3856 Blast hits to 3856 proteins in 511 species: Archae - 0; Bacteria - 0; Metazoa - 552; Fungi - 206; Plants - 3050; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G17310.1p  transcript_id AT1G17310.1  protein_id AT1G17310.1p  transcript_id AT1G17310.1  
At1g17330	chr1:005929966	0.0	W/5929966-5930127,5930281-5930311,5930404-5930422,5930803-5930900,5931027-5931125,5931257-5931429,5931509-5931595	AT1G17330.1 CDS  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product metal-dependent phosphohydrolase HD domain-containing protein-related  note metal-dependent phosphohydrolase HD domain-containing protein-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607); Has 805 Blast hits to 805 proteins in 389 species: Archae - 41; Bacteria - 627; Metazoa - 0; Fungi - 56; Plants - 19; Viruses - 3; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G17330.1p  transcript_id AT1G17330.1  protein_id AT1G17330.1p  transcript_id AT1G17330.1  
At1g17340	chr1:005934129	0.0	W/5934129-5934215,5934694-5934898,5934994-5935159,5935261-5935483,5935580-5935656,5935838-5936025,5936115-5936212,5936308-5936447,5936529-5936657,5936778-5937081,5937179-5937300,5937389-5937499,5937591-5937758,5937849-5938019,5938121-5938205,5938308-5938391	AT1G17340.1 CDS  gene_syn F28G4.21, F28G4_21  go_component cellular_component|GO:0005575||ND  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  product phosphoinositide phosphatase family protein  note phosphoinositide phosphatase family protein; FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: phosphoinositide phosphatase family protein (TAIR:AT3G14205.1); Has 1218 Blast hits to 1174 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 466; Fungi - 372; Plants - 143; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT1G17340.1p  transcript_id AT1G17340.1  protein_id AT1G17340.1p  transcript_id AT1G17340.1  
At1g17345	chr1:005940525	0.0	W/5940525-5940920	AT1G17345.1 CDS  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein-related  note auxin-responsive protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein-related (TAIR:AT1G72430.1); Has 60 Blast hits to 60 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17345.1p  transcript_id AT1G17345.1  protein_id AT1G17345.1p  transcript_id AT1G17345.1  
At1g17350	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943879,5944084-5944272	AT1G17350.1 CDS  gene_syn F28G4.20, F28G4_20  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product auxin-induced-related / indole-3-acetic acid induced-related  note auxin-induced-related / indole-3-acetic acid induced-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro:IPR013857); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72420.1); Has 417 Blast hits to 417 proteins in 147 species: Archae - 0; Bacteria - 106; Metazoa - 95; Fungi - 57; Plants - 48; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).  protein_id AT1G17350.1p  transcript_id AT1G17350.1  protein_id AT1G17350.1p  transcript_id AT1G17350.1  
At1g17350	chr1:005942391	0.0	W/5942391-5942442,5942736-5942849,5943084-5943140,5943328-5943419,5943609-5943689,5943781-5943903,5944084-5944233,5944289-5944330	AT1G17350.2 CDS  gene_syn F28G4.20, F28G4_20  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product auxin-induced-related / indole-3-acetic acid induced-related  note auxin-induced-related / indole-3-acetic acid induced-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro:IPR013857); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72420.1).  protein_id AT1G17350.2p  transcript_id AT1G17350.2  protein_id AT1G17350.2p  transcript_id AT1G17350.2  
At1g17360	chr1:005947441	0.0	W/5947441-5947499,5947582-5947767,5947856-5947956,5948053-5948080,5948166-5948318,5948398-5949215,5949366-5949910,5950009-5951176,5951272-5951399	AT1G17360.1 CDS  gene_syn F28G4.18, F28G4_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 8834 Blast hits to 6495 proteins in 406 species: Archae - 8; Bacteria - 626; Metazoa - 3389; Fungi - 793; Plants - 257; Viruses - 52; Other Eukaryotes - 3709 (source: NCBI BLink).  protein_id AT1G17360.1p  transcript_id AT1G17360.1  protein_id AT1G17360.1p  transcript_id AT1G17360.1  
At1g17370	chr1:005951842	0.0	C/5951842-5952114,5952208-5952384,5952475-5952558,5952686-5952798,5952912-5952942,5953035-5953110,5953203-5953290,5953385-5953446,5953547-5953623,5953740-5953842,5954218-5954279,5954721-5954825	AT1G17370.2 CDS  gene_syn F28G4.17, UBP1B, oligouridylate binding protein 1B  gene UBP1B  go_function mRNA 3 -UTR binding|GO:0003730|10747031|ISS  product UBP1B (oligouridylate binding protein 1B); mRNA 3 -UTR binding  note oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3 -UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein, putative (TAIR:AT3G14100.1); Has 2596 Blast hits to 1752 proteins in 87 species: Archae - 0; Bacteria - 102; Metazoa - 1961; Fungi - 223; Plants - 209; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G17370.2p  transcript_id AT1G17370.2  protein_id AT1G17370.2p  transcript_id AT1G17370.2  
At1g17370	chr1:005951842	0.0	C/5951842-5952114,5952208-5952384,5952475-5952560,5952679-5952798,5952912-5952942,5953035-5953110,5953203-5953290,5953385-5953446,5953547-5953623,5953740-5953842,5954218-5954279,5954721-5954825	AT1G17370.1 CDS  gene_syn F28G4.17, UBP1B, oligouridylate binding protein 1B  gene UBP1B  go_function mRNA 3 -UTR binding|GO:0003730|10747031|ISS  product UBP1B (oligouridylate binding protein 1B); mRNA 3 -UTR binding  note oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3 -UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein, putative (TAIR:AT3G14100.1); Has 17907 Blast hits to 12570 proteins in 534 species: Archae - 0; Bacteria - 870; Metazoa - 10427; Fungi - 2031; Plants - 2891; Viruses - 0; Other Eukaryotes - 1688 (source: NCBI BLink).  protein_id AT1G17370.1p  transcript_id AT1G17370.1  protein_id AT1G17370.1p  transcript_id AT1G17370.1  
At1g17380	chr1:005955654	0.0	C/5955654-5955885,5956053-5956376,5956497-5956587,5956893-5957070	AT1G17380.1 CDS  gene_syn F28G4.16, JASMONATE-ZIM-DOMAIN PROTEIN 5, JAZ5, TIFY11A  gene JAZ5  go_component cellular_component|GO:0005575||ND  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_function molecular_function|GO:0003674||ND  product JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)  note JASMONATE-ZIM-DOMAIN PROTEIN 5 (JAZ5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) (TAIR:AT1G72450.1); Has 172 Blast hits to 167 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17380.1p  transcript_id AT1G17380.1  protein_id AT1G17380.1p  transcript_id AT1G17380.1  
At1g17390	chr1:005958628	0.0	C/5958628-5959651	AT1G17390.1 mRNA_TE_gene  pseudo  gene_syn F28G4.15  note Transposable element gene, similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At1g17400	chr1:005960920	0.0	C/5960920-5960939,5961020-5961200,5961278-5961888,5962080-5962149,5962240-5962245	AT1G17400.1 CDS  gene_syn F28G4.14, F28G4_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 140 Blast hits to 136 proteins in 31 species: Archae - 0; Bacteria - 10; Metazoa - 13; Fungi - 1; Plants - 39; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G17400.1p  transcript_id AT1G17400.1  protein_id AT1G17400.1p  transcript_id AT1G17400.1  
At1g17410	chr1:005968627	0.0	C/5968627-5968661,5968777-5968886,5969058-5969165,5969263-5969487,5969713-5969780	AT1G17410.1 CDS  gene_syn F28G4.12, F28G4_12  go_component endomembrane system|GO:0012505||IEA  go_process GTP biosynthetic process|GO:0006183||IEA  go_process UTP biosynthetic process|GO:0006228||IEA  go_process CTP biosynthetic process|GO:0006241||IEA  go_process nucleotide metabolic process|GO:0009117||IEA  go_process pyrimidine ribonucleotide metabolic process|GO:0009218||IEA  go_process pyrimidine deoxyribonucleoside interconversion|GO:0019690||IEA  go_function nucleoside diphosphate kinase activity|GO:0004550||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside diphosphate kinase activity|GO:0004550||ISS  go_function ATP binding|GO:0005524||ISS  product nucleoside diphosphate kinase family protein  note nucleoside diphosphate kinase family protein; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding / nucleoside diphosphate kinase/ protein binding (TAIR:AT5G63310.1); Has 6413 Blast hits to 6233 proteins in 1540 species: Archae - 204; Bacteria - 2584; Metazoa - 955; Fungi - 117; Plants - 246; Viruses - 17; Other Eukaryotes - 2290 (source: NCBI BLink).  protein_id AT1G17410.1p  transcript_id AT1G17410.1  protein_id AT1G17410.1p  transcript_id AT1G17410.1  
At1g17420	chr1:005977512	0.0	W/5977512-5977902,5978013-5978293,5978498-5978735,5978860-5979189,5979571-5979764,5979856-5980157,5980250-5980516,5980628-5981384	AT1G17420.1 CDS  gene_syn F28G4.10, LOX3  gene LOX3  function Lipoxygenase  go_component chloroplast|GO:0009507||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function lipoxygenase activity|GO:0016165||IEA  go_function oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|GO:0016702||IEA  go_function metal ion binding|GO:0046872||IEA  go_process defense response|GO:0006952|9232884|TAS  go_process response to wounding|GO:0009611|9232884|TAS  go_process response to fungus|GO:0009620|19220788|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|8702864|TAS  go_process growth|GO:0040007|9232884|TAS  product LOX3; electron carrier/ iron ion binding / lipoxygenase/ metal ion binding / oxidoreductase, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen  note LOX3; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, response to fungus, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: lipoxygenase, putative (TAIR:AT1G72520.1); Has 1120 Blast hits to 1107 proteins in 148 species: Archae - 0; Bacteria - 68; Metazoa - 487; Fungi - 38; Plants - 511; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G17420.1p  transcript_id AT1G17420.1  protein_id AT1G17420.1p  transcript_id AT1G17420.1  
At1g17430	chr1:005982310	0.0	W/5982310-5983035,5983155-5983247,5983553-5983620,5983808-5983919	AT1G17430.1 CDS  gene_syn F28G4.9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G72620.1); Has 3179 Blast hits to 3177 proteins in 659 species: Archae - 36; Bacteria - 2008; Metazoa - 134; Fungi - 8; Plants - 175; Viruses - 0; Other Eukaryotes - 818 (source: NCBI BLink).  protein_id AT1G17430.1p  transcript_id AT1G17430.1  protein_id AT1G17430.1p  transcript_id AT1G17430.1  
At1g17440	chr1:005984407	0.0	C/5984407-5984589,5984680-5984715,5984855-5984916,5985016-5985094,5985191-5985265,5985354-5985968,5986447-5986659,5986875-5987663	AT1G17440.1 CDS  gene_syn EER4, ENHANCED ETHYLENE RESPONSE 4, F1L3.13, TAF12B, TBP-ASSOCIATED FACTOR 12B  gene EER4  function Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.  go_function DNA binding|GO:0003677||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_component nucleus|GO:0005634|17526916|IDA  go_component transcription factor TFIID complex|GO:0005669||ISS  go_process transcription initiation|GO:0006352||ISS  go_process jasmonic acid mediated signaling pathway|GO:0009867|17526916|IMP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|17526916|IMP  go_function transcription initiation factor activity|GO:0016986||ISS  product EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor  note ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: transcription initiation factor activity, DNA binding; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor (TAIR:AT3G10070.1); Has 78314 Blast hits to 32955 proteins in 1134 species: Archae - 36; Bacteria - 3910; Metazoa - 30427; Fungi - 8230; Plants - 5691; Viruses - 326; Other Eukaryotes - 29694 (source: NCBI BLink).  protein_id AT1G17440.1p  transcript_id AT1G17440.1  protein_id AT1G17440.1p  transcript_id AT1G17440.1  
At1g17440	chr1:005984407	0.0	C/5984407-5984589,5984680-5984715,5984855-5984916,5985016-5985094,5985191-5985265,5985354-5985968,5986447-5986659,5986875-5987663	AT1G17440.2 CDS  gene_syn EER4, ENHANCED ETHYLENE RESPONSE 4, F1L3.13, TAF12B, TBP-ASSOCIATED FACTOR 12B  gene EER4  function Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.  go_function DNA binding|GO:0003677||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_component nucleus|GO:0005634|17526916|IDA  go_component transcription factor TFIID complex|GO:0005669||ISS  go_process transcription initiation|GO:0006352||ISS  go_process jasmonic acid mediated signaling pathway|GO:0009867|17526916|IMP  go_process regulation of ethylene mediated signaling pathway|GO:0010104|17526916|IMP  go_function transcription initiation factor activity|GO:0016986||ISS  product EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor  note ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor (TAIR:AT3G10070.1); Has 78314 Blast hits to 32955 proteins in 1134 species: Archae - 36; Bacteria - 3910; Metazoa - 30427; Fungi - 8230; Plants - 5691; Viruses - 326; Other Eukaryotes - 29694 (source: NCBI BLink).  protein_id AT1G17440.2p  transcript_id AT1G17440.2  protein_id AT1G17440.2p  transcript_id AT1G17440.2  
At1g17450	chr1:005988643	0.0	C/5988643-5988756,5988912-5988950,5989043-5989507,5989665-5989723,5989819-5990569,5990940-5991257,5991456-5991924,5992250-5992632,5992724-5992756,5992918-5993019,5993267-5993539,5993654-5993875,5993966-5994388,5994488-5995033,5995213-5995398,5995529-5995591,5995716-5995790,5995870-5996254,5996338-5996693	AT1G17450.1 CDS  gene_syn F28G4.7  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT1G59453.1); Has 39 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G17450.1p  transcript_id AT1G17450.1  protein_id AT1G17450.1p  transcript_id AT1G17450.1  
At1g17455	chr1:005997932	0.0	W/5997932-5998276	AT1G17455.1 CDS  gene_syn ELF4-L4, ELF4-Like 4  gene ELF4-L4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ELF4-L4 (ELF4-Like 4)  note ELF4-Like 4 (ELF4-L4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-L2 (ELF4-Like 2) (TAIR:AT1G72630.1); Has 69 Blast hits to 68 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G17455.1p  transcript_id AT1G17455.1  protein_id AT1G17455.1p  transcript_id AT1G17455.1  
At1g17455	chr1:005997932	0.0	W/5997932-5998276	AT1G17455.2 CDS  gene_syn ELF4-L4, ELF4-Like 4  gene ELF4-L4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ELF4-L4 (ELF4-Like 4)  note ELF4-Like 4 (ELF4-L4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-L2 (ELF4-Like 2) (TAIR:AT1G72630.1).  protein_id AT1G17455.2p  transcript_id AT1G17455.2  protein_id AT1G17455.2p  transcript_id AT1G17455.2  
At1g17460	chr1:005999519	0.0	W/5999519-5999638,5999777-5999951,6000287-6000345,6000469-6001320,6001534-6001668,6001909-6002184,6002266-6002310,6002394-6002546	AT1G17460.1 CDS  gene_syn F28G4.5, TRF-LIKE 3, TRFL3  gene TRFL3  function Arabidopsis thaliana myb family transcription factor (At1g17460)  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_process regulation of transcription|GO:0045449||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product TRFL3 (TRF-LIKE 3); DNA binding / transcription factor  note TRF-LIKE 3 (TRFL3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRFL6 (TRF-LIKE 6); DNA binding / transcription factor (TAIR:AT1G72650.2); Has 518 Blast hits to 514 proteins in 86 species: Archae - 0; Bacteria - 2; Metazoa - 153; Fungi - 34; Plants - 270; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G17460.1p  transcript_id AT1G17460.1  protein_id AT1G17460.1p  transcript_id AT1G17460.1  
At1g17470	chr1:006003442	0.0	W/6003442-6003511,6003747-6003814,6004121-6004197,6004329-6004509,6004634-6004690,6004786-6004860,6005014-6005133,6005262-6005432,6005577-6005690,6005776-6005946,6006060-6006155	AT1G17470.1 CDS  gene_syn ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1, ATDRG, ATDRG1, F28G4.4  gene ATDRG1  function Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant, with highest expression in actively growing tissues.  go_component cytoplasmic membrane-bounded vesicle|GO:0016023|10380799|IDA  go_function GTPase activity|GO:0003924|10380799|ISS  go_function GTP binding|GO:0005525||ISS  product ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1); GTP binding / GTPase  note ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1 (ATDRG1); FUNCTIONS IN: GTP binding, GTPase activity; LOCATED IN: cytoplasmic membrane-bounded vesicle; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: developmentally regulated GTP-binding protein, putative (TAIR:AT1G72660.3); Has 12682 Blast hits to 12667 proteins in 1595 species: Archae - 467; Bacteria - 6624; Metazoa - 742; Fungi - 378; Plants - 182; Viruses - 0; Other Eukaryotes - 4289 (source: NCBI BLink).  protein_id AT1G17470.1p  transcript_id AT1G17470.1  protein_id AT1G17470.1p  transcript_id AT1G17470.1  
At1g17470	chr1:006003442	0.0	W/6003442-6003511,6003747-6003814,6004121-6004197,6004329-6004509,6004634-6004690,6004786-6004860,6005014-6005133,6005262-6005432,6005577-6005690,6005776-6005946,6006060-6006155	AT1G17470.2 CDS  gene_syn ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1, ATDRG, ATDRG1, F28G4.4  gene ATDRG1  function Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant, with highest expression in actively growing tissues.  go_component cytoplasmic membrane-bounded vesicle|GO:0016023|10380799|IDA  go_function GTPase activity|GO:0003924|10380799|ISS  go_function GTP binding|GO:0005525||ISS  product ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1); GTP binding / GTPase  note ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1 (ATDRG1); FUNCTIONS IN: GTP binding, GTPase activity; LOCATED IN: cytoplasmic membrane-bounded vesicle; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: developmentally regulated GTP-binding protein, putative (TAIR:AT1G72660.3); Has 12682 Blast hits to 12667 proteins in 1595 species: Archae - 467; Bacteria - 6624; Metazoa - 742; Fungi - 378; Plants - 182; Viruses - 0; Other Eukaryotes - 4289 (source: NCBI BLink).  protein_id AT1G17470.2p  transcript_id AT1G17470.2  protein_id AT1G17470.2p  transcript_id AT1G17470.2  
At1g17480	chr1:006006675	0.0	C/6006675-6007157,6007237-6007350,6007426-6007620,6007735-6007995,6008070-6008132	AT1G17480.1 CDS  gene_syn F28G4.3, F28G4_3, IQ-domain 7, IQD7  gene IQD7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD7 (IQ-domain 7); calmodulin binding  note IQ-domain 7 (IQD7); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: iqd8 (IQ-domain 8); calmodulin binding (TAIR:AT1G72670.1); Has 430 Blast hits to 429 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 4; Plants - 408; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G17480.1p  transcript_id AT1G17480.1  protein_id AT1G17480.1p  transcript_id AT1G17480.1  
At1g17490	chr1:006008669	0.0	W/6008669-6008699,6008963-6009165	AT1G17490.1 CDS  gene_syn F28G4.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 29 Blast hits to 23 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17490.1p  transcript_id AT1G17490.1  protein_id AT1G17490.1p  transcript_id AT1G17490.1  
At1g17495	chr1:006009570	0.0	C/6009570-6013742	AT1G17495.1 mRNA_TE_gene  pseudo  gene_syn F28G4.2  note Transposable element gene, copia-like retrotransposon family, has a 4.7e-213 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g17500	chr1:006018757	0.0	W/6018757-6020531,6020616-6020726,6020819-6021095,6021181-6021269,6021350-6021434,6021524-6021733,6021829-6021954,6022064-6022162,6022257-6022448,6022515-6023201	AT1G17500.1 CDS  gene_syn F1L3.21, F1L3_21  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism  note ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G72700.1); Has 8711 Blast hits to 7800 proteins in 976 species: Archae - 90; Bacteria - 2043; Metazoa - 3061; Fungi - 1400; Plants - 503; Viruses - 3; Other Eukaryotes - 1611 (source: NCBI BLink).  protein_id AT1G17500.1p  transcript_id AT1G17500.1  protein_id AT1G17500.1p  transcript_id AT1G17500.1  
At1g17510	chr1:006023704	0.0	C/6023704-6023865,6024005-6024211	AT1G17510.1 CDS  gene_syn F1L3.22, F1L3_22  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17510.1p  transcript_id AT1G17510.1  protein_id AT1G17510.1p  transcript_id AT1G17510.1  
At1g17520	chr1:006024959	0.0	C/6024959-6024990,6025093-6025378,6025505-6025606,6026078-6026162,6026293-6026528,6027075-6027224	AT1G17520.1 CDS  gene_syn F1L3.23, F1L3_23  go_component nucleosome|GO:0000786||IEA  go_component nucleus|GO:0005634||IEA  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DNA-binding protein, putative  note DNA-binding protein, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: DNA-binding family protein / histone H1/H5 family protein (TAIR:AT1G72740.1); Has 615 Blast hits to 611 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 63; Plants - 394; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G17520.1p  transcript_id AT1G17520.1  protein_id AT1G17520.1p  transcript_id AT1G17520.1  
At1g17530	chr1:006027723	0.0	W/6027723-6028286	AT1G17530.1 CDS  gene_syn ATTIM23-1, F11A6.23, TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23  gene ATTIM23-1  function Encodes a translocase of inner mitochondrial membrane.  go_component mitochondrial inner membrane|GO:0005743|12692332|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein targeting to mitochondrion|GO:0006626|12692332|TAS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|12692332|TAS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23); P-P-bond-hydrolysis-driven protein transmembrane transporter  note TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23 (ATTIM23-1); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport, protein targeting to mitochondrion; LOCATED IN: mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim23 (InterPro:IPR005681), Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATTIM23-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT1G72750.1); Has 598 Blast hits to 598 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 348; Fungi - 138; Plants - 78; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G17530.1p  transcript_id AT1G17530.1  protein_id AT1G17530.1p  transcript_id AT1G17530.1  
At1g17540	chr1:006029551	0.0	C/6029551-6029607,6029714-6030123,6030212-6030575,6030654-6031061,6031159-6031236,6031341-6031397,6031479-6031662,6031753-6032004,6032094-6032215,6032315-6032412,6032485-6032641	AT1G17540.1 CDS  gene_syn F1L3.25, F1L3_25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G72760.1); Has 80467 Blast hits to 79540 proteins in 3200 species: Archae - 56; Bacteria - 7222; Metazoa - 35486; Fungi - 6119; Plants - 18111; Viruses - 261; Other Eukaryotes - 13212 (source: NCBI BLink).  protein_id AT1G17540.1p  transcript_id AT1G17540.1  protein_id AT1G17540.1p  transcript_id AT1G17540.1  
At1g17545	chr1:006033109	0.0	W/6033109-6033124,6033307-6033509,6033588-6033908	AT1G17545.1 CDS  gene_syn F1L3.26, F1L3_26  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  product protein phosphatase 2C-related / PP2C-related  note protein phosphatase 2C-related / PP2C-related; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: HAB2; catalytic/ protein serine/threonine phosphatase (TAIR:AT1G17550.1); Has 211 Blast hits to 210 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G17545.1p  transcript_id AT1G17545.1  protein_id AT1G17545.1p  transcript_id AT1G17545.1  
At1g17550	chr1:006034917	0.0	W/6034917-6035660,6035859-6036209,6036305-6036410,6036605-6036939	AT1G17550.1 CDS  gene_syn F1L3.38, HAB2  gene HAB2  function Protein Phosphatase 2C  go_component protein serine/threonine phosphatase complex|GO:0008287||IEA  go_process protein amino acid dephosphorylation|GO:0006470||IEA  go_function catalytic activity|GO:0003824||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||IEA  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product HAB2; catalytic/ protein serine/threonine phosphatase  note HAB2; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: HAB1 (HOMOLOGY TO ABI1); catalytic/ protein serine/threonine phosphatase (TAIR:AT1G72770.1); Has 4262 Blast hits to 4251 proteins in 277 species: Archae - 0; Bacteria - 94; Metazoa - 1353; Fungi - 505; Plants - 1343; Viruses - 7; Other Eukaryotes - 960 (source: NCBI BLink).  protein_id AT1G17550.1p  transcript_id AT1G17550.1  protein_id AT1G17550.1p  transcript_id AT1G17550.1  
At1g17560	chr1:006037635	0.0	C/6037635-6038099,6038205-6038296,6038541-6038574	AT1G17560.1 CDS  gene_syn F1L3.27, F1L3_27, HLL, HUELLENLOS  gene HLL  function Mutant shows abnormal ovule development  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product HLL (HUELLENLOS); structural constituent of ribosome  note HUELLENLOS (HLL); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14, bacterial-type (InterPro:IPR005745), Ribosomal protein L14b/L23e (InterPro:IPR000218); BEST Arabidopsis thaliana protein match is: ribosomal protein L14 family protein / huellenlos paralog (HLP) (TAIR:AT5G46160.2); Has 6351 Blast hits to 6351 proteins in 1820 species: Archae - 223; Bacteria - 2991; Metazoa - 188; Fungi - 181; Plants - 544; Viruses - 0; Other Eukaryotes - 2224 (source: NCBI BLink).  protein_id AT1G17560.1p  transcript_id AT1G17560.1  protein_id AT1G17560.1p  transcript_id AT1G17560.1  
At1g17570	chr1:006038757	0.0	W/6038757-6038838	AT1G17570.1 tRNA  gene_syn 52177.TRNA-SER-1, 60124.TRNA-SER-1, AT1G17575  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ser (anticodon: AGA)  transcript_id AT1G17570.1  
At1g17580	chr1:006039453	0.0	W/6039453-6039455,6039835-6039960,6040579-6040716,6040824-6040969,6041059-6041215,6041305-6041363,6041569-6041728,6041834-6041983,6042071-6042207,6042317-6042463,6042555-6042656,6042966-6043023,6043112-6043213,6043373-6043410,6043493-6043619,6043708-6043878,6043957-6044088,6044298-6044407,6044505-6044565,6044778-6044955,6045145-6045350,6045464-6045583,6045681-6045779,6045899-6046117,6046319-6046458,6046673-6046790,6046874-6046924,6047006-6047056,6047170-6047340,6047424-6047579,6047663-6047872,6047984-6048130,6048234-6048304,6048387-6048486,6048565-6048678,6048757-6048837,6049003-6049085,6049186-6049309	AT1G17580.1 CDS  gene_syn ARABIDOPSIS MYOSIN 1, ATMYA1, F1L3.28, F1L3_28, MYA1, MYOSIN 1, MYOSIN XI 1, XI-1  gene MYA1  function Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development.  go_component myosin complex|GO:0016459||IEA  go_component myosin complex|GO:0016459||ISS  go_process post-embryonic development|GO:0009791|19060218|IGI  go_process fruit development|GO:0010154|19060218|IGI  go_process cell growth|GO:0016049|19060218|IGI  go_process actin filament-based movement|GO:0030048|11516337|TAS  go_process cell division|GO:0051301|19060218|IGI  go_process Golgi localization|GO:0051645|19060218|IMP  go_process mitochondrion localization|GO:0051646|19060218|IGI  go_process peroxisome localization|GO:0060151|19060218|IGI  go_function motor activity|GO:0003774|11516337|ISS  go_function motor activity|GO:0003774||ISS  go_function protein binding|GO:0005515||ISS  product MYA1 (MYOSIN 1); motor/ protein binding  note MYOSIN 1 (MYA1); FUNCTIONS IN: protein binding, motor activity; INVOLVED IN: in 8 processes; LOCATED IN: myosin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor region (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: XIK; motor/ protein binding (TAIR:AT5G20490.1); Has 15669 Blast hits to 11058 proteins in 781 species: Archae - 80; Bacteria - 546; Metazoa - 10392; Fungi - 950; Plants - 573; Viruses - 13; Other Eukaryotes - 3115 (source: NCBI BLink).  protein_id AT1G17580.1p  transcript_id AT1G17580.1  protein_id AT1G17580.1p  transcript_id AT1G17580.1  
At1g17590	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.1 CDS  gene_syn F1L3.29, F1L3_29, NF-YA8, NUCLEAR FACTOR Y, SUBUNIT A8  gene NF-YA8  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A8 (NF-YA8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3); transcription factor (TAIR:AT1G72830.1); Has 444 Blast hits to 444 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G17590.1p  transcript_id AT1G17590.1  protein_id AT1G17590.1p  transcript_id AT1G17590.1  
At1g17590	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.2 CDS  gene_syn F1L3.29, F1L3_29, NF-YA8, NUCLEAR FACTOR Y, SUBUNIT A8  gene NF-YA8  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A8 (NF-YA8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3); transcription factor (TAIR:AT1G72830.1); Has 444 Blast hits to 444 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G17590.2p  transcript_id AT1G17590.2  protein_id AT1G17590.2p  transcript_id AT1G17590.2  
At1g17590	chr1:006050481	0.0	C/6050481-6050852,6050932-6051087,6051295-6051369,6051451-6051551,6051702-6051984	AT1G17590.3 CDS  gene_syn F1L3.29, F1L3_29, NF-YA8, NUCLEAR FACTOR Y, SUBUNIT A8  gene NF-YA8  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_component CCAAT-binding factor complex|GO:0016602||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8); transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A8 (NF-YA8); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3); transcription factor (TAIR:AT1G72830.1); Has 444 Blast hits to 444 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G17590.3p  transcript_id AT1G17590.3  protein_id AT1G17590.3p  transcript_id AT1G17590.3  
At1g17600	chr1:006053250	0.0	C/6053250-6054458,6054505-6054807,6054908-6056009,6056109-6056572	AT1G17600.1 CDS  gene_syn F1L3.30, F1L3_30  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: leaf whorl, leaf; EXPRESSED DURING: LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G40100.1); Has 18064 Blast hits to 12170 proteins in 518 species: Archae - 16; Bacteria - 1103; Metazoa - 3527; Fungi - 149; Plants - 12669; Viruses - 0; Other Eukaryotes - 600 (source: NCBI BLink).  protein_id AT1G17600.1p  transcript_id AT1G17600.1  protein_id AT1G17600.1p  transcript_id AT1G17600.1  
At1g17610	chr1:006056895	0.0	W/6056895-6058157	AT1G17610.1 CDS  gene_syn F11A6.20, F11A6_20  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  product disease resistance protein-related  note disease resistance protein-related; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor (TAIR:AT5G40090.1); Has 5001 Blast hits to 4962 proteins in 191 species: Archae - 0; Bacteria - 24; Metazoa - 2; Fungi - 1; Plants - 4966; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G17610.1p  transcript_id AT1G17610.1  protein_id AT1G17610.1p  transcript_id AT1G17610.1  
At1g17615	chr1:006059441	0.0	W/6059441-6059919,6060004-6060667	AT1G17615.1 CDS  gene_syn F1L3.31, F1L3_31  go_component intrinsic to membrane|GO:0031224||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS class), putative  note disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72950.1); Has 3234 Blast hits to 3155 proteins in 156 species: Archae - 0; Bacteria - 54; Metazoa - 37; Fungi - 0; Plants - 3140; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G17615.1p  transcript_id AT1G17615.1  protein_id AT1G17615.1p  transcript_id AT1G17615.1  
At1g17620	chr1:006062313	0.0	W/6062313-6063107	AT1G17620.1 CDS  gene_syn F11A6.25  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11890.1); Has 539 Blast hits to 538 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17620.1p  transcript_id AT1G17620.1  protein_id AT1G17620.1p  transcript_id AT1G17620.1  
At1g17630	chr1:006064525	0.0	W/6064525-6066720	AT1G17630.1 CDS  gene_syn F11A6.24  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G20230.1); Has 14325 Blast hits to 4985 proteins in 149 species: Archae - 0; Bacteria - 2; Metazoa - 95; Fungi - 52; Plants - 13910; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT1G17630.1p  transcript_id AT1G17630.1  protein_id AT1G17630.1p  transcript_id AT1G17630.1  
At1g17640	chr1:006067394	0.0	C/6067394-6067822,6067906-6068075,6068152-6068260,6068355-6068518,6068730-6068770,6068902-6069098	AT1G17640.1 CDS  gene_syn F11A6.17  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G13224.2); Has 43180 Blast hits to 20309 proteins in 939 species: Archae - 10; Bacteria - 9650; Metazoa - 19480; Fungi - 2930; Plants - 6730; Viruses - 257; Other Eukaryotes - 4123 (source: NCBI BLink).  protein_id AT1G17640.1p  transcript_id AT1G17640.1  protein_id AT1G17640.1p  transcript_id AT1G17640.1  
At1g17650	chr1:006069594	0.0	C/6069594-6069758,6069849-6069953,6070030-6070102,6070185-6070255,6070344-6070396,6070559-6070619,6070713-6070797,6070985-6071040,6071128-6071203,6071317-6071382,6071500-6071581,6071781-6071964	AT1G17650.1 CDS  gene_syn F11A6.12, GLYOXYLATE REDUCTASE 2, GLYR2, GR2  gene GLYR2  function Glyoxylate reductase located in chloroplasts.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process metabolic process|GO:0008152||IEA  go_component chloroplast|GO:0009507|18495639|IDA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||ISS  go_function glyoxylate reductase (NADP) activity|GO:0030267|18495639|IDA  product GLYR2 (GLYOXYLATE REDUCTASE 2); glyoxylate reductase (NADP)/ phosphogluconate dehydrogenase (decarboxylating)  note GLYOXYLATE REDUCTASE 2 (GLYR2); FUNCTIONS IN: phosphogluconate dehydrogenase (decarboxylating) activity, glyoxylate reductase (NADP) activity; INVOLVED IN: pentose-phosphate shunt, metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GLYR1 (GLYOXYLATE REDUCTASE 1); 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating) (TAIR:AT3G25530.1); Has 11370 Blast hits to 11350 proteins in 1163 species: Archae - 88; Bacteria - 5511; Metazoa - 285; Fungi - 283; Plants - 179; Viruses - 0; Other Eukaryotes - 5024 (source: NCBI BLink).  protein_id AT1G17650.1p  transcript_id AT1G17650.1  protein_id AT1G17650.1p  transcript_id AT1G17650.1  
At1g17665	chr1:006072598	0.0	C/6072598-6072762,6073003-6073101,6073181-6073268,6073470-6073522,6073873-6074484	AT1G17665.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 103 Blast hits to 100 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 4; Plants - 19; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G17665.1p  transcript_id AT1G17665.1  protein_id AT1G17665.1p  transcript_id AT1G17665.1  
At1g17660	chr1:006075820	0.0	W/6075820-6075891	AT1G17660.1 tRNA  gene_syn 60124.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G17660.1  
At1g17670	chr1:006075945	0.0	C/6075945-6076018	AT1G17670.1 tRNA  gene_syn 60124.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT1G17670.1  
At1g17680	chr1:006076388	0.0	W/6076388-6076701,6076920-6077007,6077140-6077247,6077487-6077671,6078021-6078216,6078344-6078601,6079037-6079256,6079537-6079650,6079973-6080118,6080363-6080448,6080542-6080659,6080889-6080933,6081082-6081208,6081296-6081410,6081497-6081687,6081781-6082160	AT1G17680.1 CDS  gene_syn F11A6.2, F11A6_2  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 5115 Blast hits to 2913 proteins in 387 species: Archae - 48; Bacteria - 954; Metazoa - 1578; Fungi - 711; Plants - 242; Viruses - 52; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT1G17680.1p  transcript_id AT1G17680.1  protein_id AT1G17680.1p  transcript_id AT1G17680.1  
At1g17680	chr1:006076388	0.0	W/6076388-6076701,6076920-6077007,6077140-6077247,6077487-6077671,6078021-6078216,6078344-6078601,6079037-6079256,6079537-6079650,6079973-6080118,6080363-6080448,6080542-6080659,6080889-6080933,6081082-6081208,6081296-6081410,6081497-6081687,6081781-6082160	AT1G17680.2 CDS  gene_syn F11A6.2, F11A6_2  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product transcription factor-related  note transcription factor-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); Has 5115 Blast hits to 2913 proteins in 387 species: Archae - 48; Bacteria - 954; Metazoa - 1578; Fungi - 711; Plants - 242; Viruses - 52; Other Eukaryotes - 1530 (source: NCBI BLink).  protein_id AT1G17680.2p  transcript_id AT1G17680.2  protein_id AT1G17680.2p  transcript_id AT1G17680.2  
At1g17690	chr1:006082878	0.0	C/6082878-6082952,6083121-6083195,6083286-6083348,6083450-6083555,6083650-6083744,6083910-6083939,6084122-6084193,6084261-6084320,6084527-6084573,6084705-6084769,6084867-6084955,6085038-6085076,6085280-6085339,6085427-6085499,6085602-6085798,6086005-6086085,6086188-6086319,6086421-6086521,6086628-6086751,6086849-6086993,6087094-6087253,6087418-6087542,6087801-6087930,6088037-6088157	AT1G17690.1 CDS  gene_syn F11A6.3, F11A6_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1253 (InterPro:IPR010678); Has 24487 Blast hits to 12385 proteins in 666 species: Archae - 70; Bacteria - 4843; Metazoa - 8327; Fungi - 2833; Plants - 863; Viruses - 487; Other Eukaryotes - 7064 (source: NCBI BLink).  protein_id AT1G17690.1p  transcript_id AT1G17690.1  protein_id AT1G17690.1p  transcript_id AT1G17690.1  
At1g17700	chr1:006089588	0.0	W/6089588-6090130	AT1G17700.1 CDS  gene_syn F11A6.4, F11A6_4, PRA1.F1, PRENYLATED RAB ACCEPTOR 1.F1  gene PRA1.F1  go_component endoplasmic reticulum|GO:0005783|18583532|IDA  go_process vesicle-mediated transport|GO:0016192|18583532|IDA  go_function molecular_function|GO:0003674||ND  product PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)  note PRENYLATED RAB ACCEPTOR 1.F1 (PRA1.F1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA7 (TAIR:AT1G55190.1); Has 338 Blast hits to 338 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 21; Plants - 187; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G17700.1p  transcript_id AT1G17700.1  protein_id AT1G17700.1p  transcript_id AT1G17700.1  
At1g17710	chr1:006090763	0.0	C/6090763-6091131,6091309-6091510,6091583-6091704,6091829-6091975	AT1G17710.1 CDS  gene_syn F11A6.5, F11A6_5  go_process metabolic process|GO:0008152||IEA  go_function phosphatase activity|GO:0016791||IEA  product phosphatase  note phosphatase; FUNCTIONS IN: phosphatase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase, PHOSPHO2 (InterPro:IPR016965), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383), Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: phosphatase (TAIR:AT1G73010.1); Has 262 Blast hits to 260 proteins in 77 species: Archae - 0; Bacteria - 12; Metazoa - 155; Fungi - 12; Plants - 57; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G17710.1p  transcript_id AT1G17710.1  protein_id AT1G17710.1p  transcript_id AT1G17710.1  
At1g17710	chr1:006090763	0.0	C/6090763-6091131,6091309-6091510,6091583-6091755	AT1G17710.2 CDS  gene_syn F11A6.5, F11A6_5  go_function phosphatase activity|GO:0016791||IEA  product phosphatase  note phosphatase; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: phosphatase (TAIR:AT1G73010.1); Has 252 Blast hits to 250 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 155; Fungi - 12; Plants - 57; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G17710.2p  transcript_id AT1G17710.2  protein_id AT1G17710.2p  transcript_id AT1G17710.2  
At1g17720	chr1:006093949	0.0	C/6093949-6094085,6094168-6094235,6094338-6094415,6094514-6094605,6094687-6094755,6094862-6094985,6095172-6095295,6095444-6095562,6095832-6095923,6096213-6096389,6096641-6096760,6096848-6096943,6097026-6097129,6097960-6098065	AT1G17720.1 CDS  gene_syn ATB BETA, F11A6.6, F11A6_6  gene ATB BETA  function type 2A protein serine/threonine phosphatase 55 kDa B  go_component protein phosphatase type 2A complex|GO:0000159|8756607|ISS  go_process protein amino acid dephosphorylation|GO:0006470|8756607|ISS  go_function nucleotide binding|GO:0000166||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601|8756607|ISS  product ATB BETA; nucleotide binding / protein phosphatase type 2A regulator  note ATB BETA; FUNCTIONS IN: protein phosphatase type 2A regulator activity, nucleotide binding; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ATB ALPHA; nucleotide binding / protein phosphatase type 2A regulator (TAIR:AT1G51690.1); Has 817 Blast hits to 774 proteins in 172 species: Archae - 0; Bacteria - 70; Metazoa - 397; Fungi - 147; Plants - 80; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G17720.1p  transcript_id AT1G17720.1  protein_id AT1G17720.1p  transcript_id AT1G17720.1  
At1g17720	chr1:006093949	0.0	C/6093949-6094085,6094168-6094235,6094338-6094415,6094514-6094605,6094687-6094755,6094862-6094985,6095172-6095295,6095444-6095562,6095832-6095923,6096216-6096389,6096641-6096760,6096848-6096943,6097026-6097129,6097960-6098065	AT1G17720.2 CDS  gene_syn ATB BETA, F11A6.6, F11A6_6  gene ATB BETA  function type 2A protein serine/threonine phosphatase 55 kDa B  go_component protein phosphatase type 2A complex|GO:0000159|8756607|ISS  go_process protein amino acid dephosphorylation|GO:0006470|8756607|ISS  go_function nucleotide binding|GO:0000166||ISS  go_function protein phosphatase type 2A regulator activity|GO:0008601|8756607|ISS  product ATB BETA; nucleotide binding / protein phosphatase type 2A regulator  note ATB BETA; FUNCTIONS IN: protein phosphatase type 2A regulator activity, nucleotide binding; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: ATB ALPHA; nucleotide binding / protein phosphatase type 2A regulator (TAIR:AT1G51690.2); Has 788 Blast hits to 753 proteins in 172 species: Archae - 0; Bacteria - 55; Metazoa - 394; Fungi - 149; Plants - 80; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G17720.2p  transcript_id AT1G17720.2  protein_id AT1G17720.2p  transcript_id AT1G17720.2  
At1g17730	chr1:006099210	0.0	W/6099210-6099534,6099867-6100153	AT1G17730.1 CDS  gene_syn F11A6.7, F11A6_7, VACUOLAR PROTEIN SORTING 46.1, VPS46.1  gene VPS46.1  go_component cellular_component|GO:0005575||ND  go_process vesicle-mediated transport|GO:0016192|16488176|ISS  product VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)  note VACUOLAR PROTEIN SORTING 46.1 (VPS46.1); INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: VPS46.2 (TAIR:AT1G73030.1); Has 975 Blast hits to 975 proteins in 162 species: Archae - 2; Bacteria - 0; Metazoa - 421; Fungi - 185; Plants - 220; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).  protein_id AT1G17730.1p  transcript_id AT1G17730.1  protein_id AT1G17730.1p  transcript_id AT1G17730.1  
At1g17745	chr1:006101157	0.0	W/6101157-6101775,6103633-6104120,6104212-6104979	AT1G17745.1 CDS  gene_syn 3-PHOSPHOGLYCERATE DEHYDROGENASE, PGDH  gene PGDH  function encodes a 3-Phosphoglycerate dehydrogenase  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_component chloroplast|GO:0009507|9867856|IDA  go_process L-serine biosynthetic process|GO:0006564|9867856|TAS  go_function phosphoglycerate dehydrogenase activity|GO:0004617|9867856|IGI  product PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase  note 3-PHOSPHOGLYCERATE DEHYDROGENASE (PGDH); FUNCTIONS IN: phosphoglycerate dehydrogenase activity; INVOLVED IN: L-serine biosynthetic process; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: EDA9 (embryo sac development arrest 9); ATP binding (TAIR:AT4G34200.1); Has 20865 Blast hits to 20864 proteins in 1535 species: Archae - 286; Bacteria - 9648; Metazoa - 666; Fungi - 752; Plants - 322; Viruses - 5; Other Eukaryotes - 9186 (source: NCBI BLink).  protein_id AT1G17745.1p  transcript_id AT1G17745.1  protein_id AT1G17745.1p  transcript_id AT1G17745.1  
At1g17744	chr1:006101355	0.0	C/6101355-6101795	AT1G17744.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17744.1p  transcript_id AT1G17744.1  protein_id AT1G17744.1p  transcript_id AT1G17744.1  
At1g17750	chr1:006106656	0.0	W/6106656-6109551,6109638-6110008	AT1G17750.1 CDS  gene_syn F11A6.9, F11A6_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PEPR1 (PEP1 receptor 1); ATP binding / kinase/ protein binding / protein serine/threonine kinase (TAIR:AT1G73080.1); Has 173699 Blast hits to 102983 proteins in 3355 species: Archae - 96; Bacteria - 14466; Metazoa - 69118; Fungi - 7871; Plants - 59504; Viruses - 412; Other Eukaryotes - 22232 (source: NCBI BLink).  protein_id AT1G17750.1p  transcript_id AT1G17750.1  protein_id AT1G17750.1p  transcript_id AT1G17750.1  
At1g17760	chr1:006110208	0.0	C/6110208-6110380,6110555-6110746,6110846-6111010,6111099-6111176,6111264-6111330,6111426-6111578,6111969-6112028,6112421-6112517,6112697-6112761,6113168-6113308,6113451-6113513,6113600-6113658,6113856-6113976,6114079-6114142,6114514-6114560,6114791-6114919,6115035-6115175,6115253-6115314,6115616-6115716,6115856-6115965,6116051-6116113,6116218-6116271	AT1G17760.1 CDS  gene_syn ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, ATCSTF77, CSTF77, F11A6.10, F11A6_10  gene CSTF77  function Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit.  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process RNA processing|GO:0006396||IEA  go_process mRNA processing|GO:0006397||IEA  go_process mRNA processing|GO:0006397||ISS  go_function protein binding|GO:0005515|16282318|IPI  product CSTF77; protein binding  note CSTF77; FUNCTIONS IN: protein binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: PRP39; binding (TAIR:AT1G04080.1); Has 1516 Blast hits to 1135 proteins in 170 species: Archae - 0; Bacteria - 8; Metazoa - 684; Fungi - 474; Plants - 174; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G17760.1p  transcript_id AT1G17760.1  protein_id AT1G17760.1p  transcript_id AT1G17760.1  
At1g17770	chr1:006120741	0.0	W/6120741-6122822	AT1G17770.1 CDS  gene_syn F2H15.1, F2H15_1, SDG17, SET DOMAIN PROTEIN 17, SU(VAR)3-9 HOMOLOG 7, SUVH7  gene SUVH7  function Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.  go_component nucleus|GO:0005634||IEA  go_process chromatin modification|GO:0016568||IEA  go_function DNA binding|GO:0003677||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function histone-lysine N-methyltransferase activity|GO:0018024||IEA  product SUVH7 (SU(VAR)3-9 HOMOLOG 7); DNA binding / histone-lysine N-methyltransferase/ zinc ion binding  note SU(VAR)3-9 HOMOLOG 7 (SUVH7); FUNCTIONS IN: DNA binding, zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), AT hook, DNA-binding, conserved site (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding region (InterPro:IPR007728), Post-SET zinc-binding region (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SDG21 (SET DOMAIN GROUP 21); histone methyltransferase (TAIR:AT2G24740.1); Has 3378 Blast hits to 3235 proteins in 305 species: Archae - 0; Bacteria - 221; Metazoa - 1804; Fungi - 298; Plants - 557; Viruses - 0; Other Eukaryotes - 498 (source: NCBI BLink).  protein_id AT1G17770.1p  transcript_id AT1G17770.1  protein_id AT1G17770.1p  transcript_id AT1G17770.1  
At1g17780	chr1:006124095	0.0	W/6124095-6124157,6124254-6124629,6124722-6124876,6124969-6125166	AT1G17780.2 CDS  gene_syn F2H15.22, F2H15_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17780.2p  transcript_id AT1G17780.2  protein_id AT1G17780.2p  transcript_id AT1G17780.2  
At1g17780	chr1:006124317	0.0	W/6124317-6124629,6124722-6124978	AT1G17780.1 CDS  gene_syn F2H15.22, F2H15_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16575.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17780.1p  transcript_id AT1G17780.1  protein_id AT1G17780.1p  transcript_id AT1G17780.1  
At1g17790	chr1:006125532	0.0	C/6125532-6125581,6125660-6125761,6125878-6125923,6126011-6127276	AT1G17790.1 CDS  gene_syn F2H15.2, F2H15_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: GTE3 (GLOBAL TRANSCRIPTION FACTOR GROUP E 3); DNA binding / histone binding (TAIR:AT1G73150.1); Has 10421 Blast hits to 6039 proteins in 444 species: Archae - 16; Bacteria - 924; Metazoa - 4753; Fungi - 937; Plants - 711; Viruses - 164; Other Eukaryotes - 2916 (source: NCBI BLink).  protein_id AT1G17790.1p  transcript_id AT1G17790.1  protein_id AT1G17790.1p  transcript_id AT1G17790.1  
At1g17800	chr1:006128828	0.0	W/6128828-6129038,6129180-6129391	AT1G17800.1 CDS  gene_syn F2H15.3, F2H15_3  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: ARPN (PLANTACYANIN); copper ion binding / electron carrier (TAIR:AT2G02850.1); Has 613 Blast hits to 609 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17800.1p  transcript_id AT1G17800.1  protein_id AT1G17800.1p  transcript_id AT1G17800.1  
At1g17810	chr1:006130209	0.0	W/6130209-6130350,6130651-6130916,6131047-6131442	AT1G17810.1 CDS  gene_syn BETA-TIP, BETA-TONOPLAST INTRINSIC PROTEIN, F2H15.4, F2H15_4  gene BETA-TIP  function beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  go_function water channel activity|GO:0015250||ISS  product BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN); water channel  note BETA-TONOPLAST INTRINSIC PROTEIN (BETA-TIP); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: TIP3;1; water channel (TAIR:AT1G73190.1); Has 6723 Blast hits to 6717 proteins in 1236 species: Archae - 57; Bacteria - 2571; Metazoa - 1300; Fungi - 281; Plants - 1467; Viruses - 2; Other Eukaryotes - 1045 (source: NCBI BLink).  protein_id AT1G17810.1p  transcript_id AT1G17810.1  protein_id AT1G17810.1p  transcript_id AT1G17810.1  
At1g17820	chr1:006131751	0.0	C/6131751-6132425,6132515-6132709,6132882-6132976,6133122-6133488,6133591-6134221,6134308-6134549,6134909-6135115	AT1G17820.1 CDS  gene_syn F2H15.5, F2H15_5  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding  note phosphoinositide binding; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: phosphoinositide binding (TAIR:AT1G73200.1); Has 444 Blast hits to 309 proteins in 108 species: Archae - 0; Bacteria - 7; Metazoa - 132; Fungi - 162; Plants - 27; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G17820.1p  transcript_id AT1G17820.1  protein_id AT1G17820.1p  transcript_id AT1G17820.1  
At1g17830	chr1:006136118	0.0	C/6136118-6136386,6136515-6136606,6136696-6136781,6136883-6137117,6137203-6137420,6138059-6138172	AT1G17830.1 CDS  gene_syn F2H15.6, F2H15_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73210.1); Has 147 Blast hits to 147 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G17830.1p  transcript_id AT1G17830.1  protein_id AT1G17830.1p  transcript_id AT1G17830.1  
At1g17840	chr1:006142870	0.0	W/6142870-6143253,6143479-6143768,6143858-6144029,6144111-6144233,6144317-6144445,6144533-6144727,6144808-6144894,6144976-6145248,6145337-6145444,6145544-6145894	AT1G17840.1 CDS  gene_syn ABCG11, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATWBC11, COF1, CUTICULAR DEFECT AND ORGAN FUSION 1, DESPERADO, DSO, F2H15.7, F2H15_7, WBC11, WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11  gene WBC11  function Encodes a plasma membrane-localized ATP-binding cassette transporter, that is required for cutin transport to the extracellular matrix.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component external side of plasma membrane|GO:0009897|17951461|IDA  go_process fatty acid transport|GO:0015908|17951461|TAS  go_process cutin transport|GO:0080051|17951461|IMP  go_function fatty acid transporter activity|GO:0015245|17951461|TAS  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11); ATPase, coupled to transmembrane movement of substances / fatty acid transporter  note WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11 (WBC11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, fatty acid transporter activity; INVOLVED IN: cutin transport, fatty acid transport; LOCATED IN: plasma membrane, external side of plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT3G21090.1); Has 215478 Blast hits to 198943 proteins in 2595 species: Archae - 4101; Bacteria - 151660; Metazoa - 6384; Fungi - 4122; Plants - 2563; Viruses - 10; Other Eukaryotes - 46638 (source: NCBI BLink).  protein_id AT1G17840.1p  transcript_id AT1G17840.1  protein_id AT1G17840.1p  transcript_id AT1G17840.1  
At1g17850	chr1:006146470	0.0	C/6146470-6146623,6146782-6147084,6147179-6147282,6147446-6147537,6147775-6147937,6148053-6148196,6148314-6148367,6148494-6148820	AT1G17850.1 CDS  gene_syn F2H15.8, F2H15_8  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT2G40760.1); Has 3833 Blast hits to 3832 proteins in 847 species: Archae - 0; Bacteria - 1695; Metazoa - 46; Fungi - 2; Plants - 52; Viruses - 0; Other Eukaryotes - 2038 (source: NCBI BLink).  protein_id AT1G17850.1p  transcript_id AT1G17850.1  protein_id AT1G17850.1p  transcript_id AT1G17850.1  
At1g17860	chr1:006149343	0.0	W/6149343-6149933	AT1G17860.1 CDS  gene_syn F2H15.9, F2H15_9  go_component cell wall|GO:0005618|15593128|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function endopeptidase inhibitor activity|GO:0004866||IEA  go_process biological_process|GO:0008150||ND  go_function endopeptidase inhibitor activity|GO:0004866||ISS  product trypsin and protease inhibitor family protein / Kunitz family protein  note trypsin and protease inhibitor family protein / Kunitz family protein; FUNCTIONS IN: endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I3, Kunitz legume (InterPro:IPR002160), Kunitz inhibitor ST1-like (InterPro:IPR011065); BEST Arabidopsis thaliana protein match is: trypsin and protease inhibitor family protein / Kunitz family protein (TAIR:AT1G73260.1); Has 508 Blast hits to 508 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 507; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G17860.1p  transcript_id AT1G17860.1  protein_id AT1G17860.1p  transcript_id AT1G17860.1  
At1g17870	chr1:006150036	0.0	C/6150036-6150394,6150470-6150624,6150708-6150946,6151030-6151254,6151349-6151546,6151640-6152185	AT1G17870.1 CDS  gene_syn ATEGY3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, F2H15.10, F2H15_10  gene EGY3  function S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442 454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171 179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.  go_component chloroplast|GO:0009507||IEA  go_process response to heat|GO:0009408|17059409|IEP  go_process response to high light intensity|GO:0009644|17059409|IEP  go_process response to hydrogen peroxide|GO:0042542|17059409|IEP  product EGY3 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3)  note ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 (EGY3); INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1); metalloendopeptidase (TAIR:AT5G35220.1); Has 528 Blast hits to 520 proteins in 155 species: Archae - 62; Bacteria - 188; Metazoa - 68; Fungi - 12; Plants - 75; Viruses - 1; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G17870.1p  transcript_id AT1G17870.1  protein_id AT1G17870.1p  transcript_id AT1G17870.1  
At1g17880	chr1:006152572	0.0	C/6152572-6152756,6152842-6152880,6152974-6153030,6153120-6153268,6153358-6153425	AT1G17880.1 CDS  gene_syn F2H15.11, F2H15_11  go_process response to salt stress|GO:0009651|17916636|IEP  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700||ISS  product nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative  note nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative; FUNCTIONS IN: transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex (NAC) domain-containing protein (TAIR:AT1G73230.1); Has 620 Blast hits to 620 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 124; Plants - 89; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G17880.1p  transcript_id AT1G17880.1  protein_id AT1G17880.1p  transcript_id AT1G17880.1  
At1g17890	chr1:006154478	0.0	C/6154478-6155440	AT1G17890.2 CDS  gene_syn F2H15.12, F2H15_12, GER2  gene GER2  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process GDP-L-fucose biosynthetic process|GO:0042350||ISS  go_function catalytic activity|GO:0003824||ISS  product GER2; binding / catalytic/ coenzyme binding  note GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1); GDP-L-fucose synthase (TAIR:AT1G73250.1); Has 18894 Blast hits to 18893 proteins in 1572 species: Archae - 373; Bacteria - 8804; Metazoa - 430; Fungi - 144; Plants - 435; Viruses - 22; Other Eukaryotes - 8686 (source: NCBI BLink).  protein_id AT1G17890.2p  transcript_id AT1G17890.2  protein_id AT1G17890.2p  transcript_id AT1G17890.2  
At1g17890	chr1:006154478	0.0	C/6154478-6155440	AT1G17890.3 CDS  gene_syn F2H15.12, F2H15_12, GER2  gene GER2  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process GDP-L-fucose biosynthetic process|GO:0042350||ISS  go_function catalytic activity|GO:0003824||ISS  product GER2; binding / catalytic/ coenzyme binding  note GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1); GDP-L-fucose synthase (TAIR:AT1G73250.1); Has 18894 Blast hits to 18893 proteins in 1572 species: Archae - 373; Bacteria - 8804; Metazoa - 430; Fungi - 144; Plants - 435; Viruses - 22; Other Eukaryotes - 8686 (source: NCBI BLink).  protein_id AT1G17890.3p  transcript_id AT1G17890.3  protein_id AT1G17890.3p  transcript_id AT1G17890.3  
At1g17890	chr1:006154478	0.0	C/6154478-6155442,6155575-6155596	AT1G17890.1 CDS  gene_syn F2H15.12, F2H15_12, GER2  gene GER2  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_process GDP-L-fucose biosynthetic process|GO:0042350||ISS  go_function catalytic activity|GO:0003824||ISS  product GER2; binding / catalytic/ coenzyme binding  note GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1); GDP-L-fucose synthase (TAIR:AT1G73250.1); Has 18894 Blast hits to 18893 proteins in 1572 species: Archae - 373; Bacteria - 8804; Metazoa - 430; Fungi - 144; Plants - 435; Viruses - 22; Other Eukaryotes - 8686 (source: NCBI BLink).  protein_id AT1G17890.1p  transcript_id AT1G17890.1  protein_id AT1G17890.1p  transcript_id AT1G17890.1  
At1g17900	chr1:006157368	0.0	C/6157368-6158130	AT1G17900.1 mRNA_TE_gene  pseudo  gene_syn F2H15.23, F2H15_23  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1); similar to hypothetical protein PF10_0266 [Plasmodium falciparum 3D7] (GB:NP_700739.1)  
At1g17910	chr1:006159126	0.0	W/6159126-6160146,6160242-6160367,6160468-6161615	AT1G17910.1 CDS  gene_syn F2H15.13, F2H15_13  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product wall-associated kinase, putative  note wall-associated kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall-associated kinase, putative (TAIR:AT1G19390.1); Has 83332 Blast hits to 81993 proteins in 2492 species: Archae - 42; Bacteria - 7160; Metazoa - 36887; Fungi - 6330; Plants - 18594; Viruses - 395; Other Eukaryotes - 13924 (source: NCBI BLink).  protein_id AT1G17910.1p  transcript_id AT1G17910.1  protein_id AT1G17910.1p  transcript_id AT1G17910.1  
At1g17920	chr1:006162214	0.0	C/6162214-6162564,6162648-6162737,6162831-6163093,6163171-6163351,6163431-6163631,6163715-6163816,6163900-6164355,6164445-6164633,6164722-6164839,6164921-6165033	AT1G17920.1 CDS  gene_syn F2H15.14, F2H15_14, HDG12, HOMEODOMAIN GLABROUS 12  gene HDG12  function Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process trichome branching|GO:0010091|16778018|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  product HDG12 (HOMEODOMAIN GLABROUS 12); transcription factor  note HOMEODOMAIN GLABROUS 12 (HDG12); FUNCTIONS IN: transcription factor activity; INVOLVED IN: trichome branching, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: HDG11 (HOMEODOMAIN GLABROUS 11); DNA binding / transcription factor (TAIR:AT1G73360.1); Has 9138 Blast hits to 9081 proteins in 452 species: Archae - 0; Bacteria - 0; Metazoa - 7306; Fungi - 149; Plants - 1558; Viruses - 3; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G17920.1p  transcript_id AT1G17920.1  protein_id AT1G17920.1p  transcript_id AT1G17920.1  
At1g17930	chr1:006166638	0.0	C/6166638-6166835,6166918-6167298,6167373-6167525,6167632-6168279,6168376-6168432	AT1G17930.1 CDS  gene_syn F2H15.15, F2H15_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25010.1); Has 480 Blast hits to 475 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17930.1p  transcript_id AT1G17930.1  protein_id AT1G17930.1p  transcript_id AT1G17930.1  
At1g17940	chr1:006169621	0.0	C/6169621-6169708,6169797-6169898,6169989-6170143,6170414-6170503,6170639-6170737,6170852-6170918,6171022-6171118,6171258-6171396,6171476-6171534,6171622-6171696,6171789-6172035	AT1G17940.1 CDS  gene_syn F2H15.16, F2H15_16  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73390.3); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 22; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G17940.1p  transcript_id AT1G17940.1  protein_id AT1G17940.1p  transcript_id AT1G17940.1  
At1g17950	chr1:006177764	0.0	W/6177764-6177881,6178002-6178427,6178858-6179063	AT1G17950.1 CDS  gene_syn ATMYB52, BW52, F2H15.17, F2H15_17, MYB DOMAIN PROTEIN 52, MYB52  gene MYB52  function putative transcription factor: R2R3-MYB transcription family  go_component nucleus|GO:0005634|18952777|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9839469|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB52 (MYB DOMAIN PROTEIN 52); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 52 (MYB52); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to abscisic acid stimulus, regulation of transcription, DNA-dependent, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB54 (MYB DOMAIN PROTEIN 54); DNA binding / transcription factor (TAIR:AT1G73410.1); Has 6247 Blast hits to 5557 proteins in 367 species: Archae - 0; Bacteria - 0; Metazoa - 724; Fungi - 366; Plants - 3379; Viruses - 5; Other Eukaryotes - 1773 (source: NCBI BLink).  protein_id AT1G17950.1p  transcript_id AT1G17950.1  protein_id AT1G17950.1p  transcript_id AT1G17950.1  
At1g17960	chr1:006181015	0.0	C/6181015-6181122,6181226-6181297,6181526-6181597,6181696-6181914,6182007-6182099,6182181-6182273,6182369-6182455,6182546-6182578,6182822-6182916,6182973-6183045,6183195-6183495,6183607-6183737	AT1G17960.1 CDS  gene_syn F2H15.18, F2H15_18  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process threonyl-tRNA aminoacylation|GO:0006435||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function threonine-tRNA ligase activity|GO:0004829||IEA  go_function ATP binding|GO:0005524||IEA  go_process threonyl-tRNA aminoacylation|GO:0006435||ISS  go_function threonine-tRNA ligase activity|GO:0004829||ISS  product threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative  note threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: inflorescence meristem, pedicel, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), TGS-like (InterPro:IPR012676), Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), TGS (InterPro:IPR004095), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (TAIR:AT5G26830.1); Has 11113 Blast hits to 8230 proteins in 1616 species: Archae - 201; Bacteria - 5217; Metazoa - 467; Fungi - 241; Plants - 76; Viruses - 0; Other Eukaryotes - 4911 (source: NCBI BLink).  protein_id AT1G17960.1p  transcript_id AT1G17960.1  protein_id AT1G17960.1p  transcript_id AT1G17960.1  
At1g17970	chr1:006185032	0.0	W/6185032-6185604,6186171-6186335,6186660-6186758,6186844-6186978,6187068-6187202	AT1G17970.1 CDS  gene_syn F2H15.19, F2H15_19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G73760.1); Has 6054 Blast hits to 6047 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 2083; Fungi - 451; Plants - 2360; Viruses - 9; Other Eukaryotes - 1151 (source: NCBI BLink).  protein_id AT1G17970.1p  transcript_id AT1G17970.1  protein_id AT1G17970.1p  transcript_id AT1G17970.1  
At1g17980	chr1:006187742	0.0	C/6187742-6187781,6187880-6187947,6188033-6188878,6188969-6189133,6189211-6189540,6189627-6189689,6189795-6189908,6190184-6190318	AT1G17980.2 CDS  gene_syn F2H15.20, F2H15_20  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (TAIR:AT4G32850.9); Has 579 Blast hits to 577 proteins in 159 species: Archae - 0; Bacteria - 11; Metazoa - 234; Fungi - 128; Plants - 99; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G17980.2p  transcript_id AT1G17980.2  protein_id AT1G17980.2p  transcript_id AT1G17980.2  
At1g17980	chr1:006187742	0.0	C/6187742-6187781,6187880-6187947,6188033-6188878,6188969-6189133,6189211-6189540,6189627-6189689,6189795-6189908,6190184-6190345,6190435-6190497,6190900-6191007,6191107-6191184,6191314-6191418	AT1G17980.1 CDS  gene_syn F2H15.20, F2H15_20  go_component nucleus|GO:0005634|15297145|IDA  go_process RNA polyadenylation|GO:0043631|15297145|IDA  go_function protein binding|GO:0005515|15297145|IPI  go_function nucleotidyltransferase activity|GO:0016779||ISS  product nucleotidyltransferase family protein  note nucleotidyltransferase family protein; FUNCTIONS IN: protein binding, nucleotidyltransferase activity; INVOLVED IN: RNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, central region (InterPro:IPR007012), Nucleotidyltransferase (InterPro:IPR002934), Poly(A) polymerase, RNA-binding region (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (TAIR:AT4G32850.9); Has 591 Blast hits to 589 proteins in 160 species: Archae - 0; Bacteria - 11; Metazoa - 239; Fungi - 130; Plants - 103; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G17980.1p  transcript_id AT1G17980.1  protein_id AT1G17980.1p  transcript_id AT1G17980.1  
At1g17990	chr1:006192455	0.0	C/6192455-6192762,6192829-6192990,6193092-6193222,6193318-6193434,6193688-6193755	AT1G17990.2 CDS  gene_syn T10F20.3  product 12-oxophytodienoate reductase, putative  note 12-oxophytodienoate reductase, putative; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase, putative (TAIR:AT1G18020.1); Has 8050 Blast hits to 8031 proteins in 1101 species: Archae - 62; Bacteria - 5411; Metazoa - 29; Fungi - 540; Plants - 287; Viruses - 0; Other Eukaryotes - 1721 (source: NCBI BLink).  protein_id AT1G17990.2p  transcript_id AT1G17990.2  protein_id AT1G17990.2p  transcript_id AT1G17990.2  
At1g17990	chr1:006192455	0.0	C/6192455-6192762,6192829-6192990,6193092-6193222,6193318-6193458,6193688-6193755	AT1G17990.1 CDS  gene_syn T10F20.3  product 12-oxophytodienoate reductase, putative  note 12-oxophytodienoate reductase, putative; CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155), Aldolase-type TIM barrel (InterPro:IPR013785); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase, putative (TAIR:AT1G18020.1); Has 8099 Blast hits to 8080 proteins in 1101 species: Archae - 62; Bacteria - 5422; Metazoa - 29; Fungi - 540; Plants - 287; Viruses - 0; Other Eukaryotes - 1759 (source: NCBI BLink).  protein_id AT1G17990.1p  transcript_id AT1G17990.1  protein_id AT1G17990.1p  transcript_id AT1G17990.1  
At1g18000	chr1:006194668	0.0	C/6194668-6196047	AT1G18000.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF895, eukaryotic (InterPro:IPR010291), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18010.1); Has 489 Blast hits to 485 proteins in 115 species: Archae - 0; Bacteria - 49; Metazoa - 129; Fungi - 254; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G18000.1p  transcript_id AT1G18000.1  protein_id AT1G18000.1p  transcript_id AT1G18000.1  
At1g18010	chr1:006199980	0.0	W/6199980-6201359	AT1G18010.1 CDS  gene_syn T10F20.2, T10F20_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF895, eukaryotic (InterPro:IPR010291), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18000.1); Has 489 Blast hits to 485 proteins in 115 species: Archae - 0; Bacteria - 49; Metazoa - 129; Fungi - 254; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G18010.1p  transcript_id AT1G18010.1  protein_id AT1G18010.1p  transcript_id AT1G18010.1  
At1g18020	chr1:006202272	0.0	W/6202272-6202339,6202569-6202709,6202805-6202935,6203037-6203198,6203265-6203572	AT1G18020.1 CDS  product 12-oxophytodienoate reductase, putative  note 12-oxophytodienoate reductase, putative; CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155), Aldolase-type TIM barrel (InterPro:IPR013785); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase, putative (TAIR:AT1G17990.1); Has 8099 Blast hits to 8080 proteins in 1101 species: Archae - 62; Bacteria - 5422; Metazoa - 29; Fungi - 540; Plants - 287; Viruses - 0; Other Eukaryotes - 1759 (source: NCBI BLink).  protein_id AT1G18020.1p  transcript_id AT1G18020.1  protein_id AT1G18020.1p  transcript_id AT1G18020.1  
At1g18030	chr1:006204400	0.0	W/6204400-6204716,6204877-6204985,6205087-6205123,6205230-6205274,6205435-6205487,6205602-6205763,6205849-6205932,6206125-6206214,6206320-6206367,6206568-6206678	AT1G18030.1 CDS  gene_syn T10F20.4, T10F20_4  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT2G25620.1); Has 4082 Blast hits to 4070 proteins in 241 species: Archae - 3; Bacteria - 20; Metazoa - 1276; Fungi - 498; Plants - 1296; Viruses - 9; Other Eukaryotes - 980 (source: NCBI BLink).  protein_id AT1G18030.1p  transcript_id AT1G18030.1  protein_id AT1G18030.1p  transcript_id AT1G18030.1  
At1g18030	chr1:006204400	0.0	W/6204400-6204716,6204877-6204985,6205087-6205123,6205230-6205274,6205435-6205487,6205602-6205763,6205849-6205932,6206125-6206218,6206320-6206336	AT1G18030.2 CDS  gene_syn T10F20.4, T10F20_4  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT3G51470.1); Has 3857 Blast hits to 3850 proteins in 232 species: Archae - 2; Bacteria - 6; Metazoa - 1177; Fungi - 448; Plants - 1270; Viruses - 9; Other Eukaryotes - 945 (source: NCBI BLink).  protein_id AT1G18030.2p  transcript_id AT1G18030.2  protein_id AT1G18030.2p  transcript_id AT1G18030.2  
At1g18040	chr1:006207128	0.0	C/6207128-6207176,6207281-6207538,6207618-6207853,6208007-6208132,6208562-6208670,6208757-6209055,6209201-6209299	AT1G18040.1 CDS  gene_syn AT;CDCKD;3, CAK2AT, CDKD1;3, CYCLIN-DEPENDENT KINASE D1;3, T10F20.5, T10F20_5  gene CDKD1;3  go_component nucleus|GO:0005634|15610358|IDA  go_process regulation of cell cycle|GO:0051726|16024551|TAS  go_function protein kinase activity|GO:0004672|16024551|TAS  go_function kinase activity|GO:0016301||ISS  product CDKD1;3 (CYCLIN-DEPENDENT KINASE D1;3); kinase/ protein kinase  note CYCLIN-DEPENDENT KINASE D1;3 (CDKD1;3); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKD1;1 (CYCLIN-DEPENDENT KINASE D1;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G73690.1); Has 86988 Blast hits to 85857 proteins in 2791 species: Archae - 31; Bacteria - 7397; Metazoa - 37676; Fungi - 8140; Plants - 16874; Viruses - 362; Other Eukaryotes - 16508 (source: NCBI BLink).  protein_id AT1G18040.1p  transcript_id AT1G18040.1  protein_id AT1G18040.1p  transcript_id AT1G18040.1  
At1g18050	chr1:006209771	0.0	C/6209771-6210021,6210030-6210242,6210485-6210555,6211266-6211588	AT1G18050.1 CDS  gene_syn T10F20.6  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product SWAP (Suppressor-of-White-APricot)/surp domain-containing protein  note SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30370.1); Has 171 Blast hits to 170 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 9; Plants - 42; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G18050.1p  transcript_id AT1G18050.1  protein_id AT1G18050.1p  transcript_id AT1G18050.1  
At1g18060	chr1:006212065	0.0	C/6212065-6212355,6212485-6212544,6212650-6212832,6213168-6213314	AT1G18060.1 CDS  gene_syn T10F20.7  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 16 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G18060.1p  transcript_id AT1G18060.1  protein_id AT1G18060.1p  transcript_id AT1G18060.1  
At1g18070	chr1:006214236	0.0	C/6214236-6214294,6214378-6214450,6214585-6214749,6214830-6214894,6215018-6215153,6215239-6215344,6215593-6215743,6215827-6215891,6215979-6216133,6216227-6216289,6216415-6216486,6216629-6216674,6216758-6216869,6217081-6217185,6217294-6217347,6217453-6217503,6217580-6217654,6217737-6217778,6218208-6218211	AT1G18070.1 CDS  gene_syn T10F20.8  go_component vacuole|GO:0005773|15539469|IDA  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity|GO:0003747||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product EF-1-alpha-related GTP-binding protein, putative  note EF-1-alpha-related GTP-binding protein, putative; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation release factor activity, GTPase activity; INVOLVED IN: translational termination; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000), Yeast eukaryotic release factor (InterPro:IPR003285); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 54271 Blast hits to 54210 proteins in 13560 species: Archae - 559; Bacteria - 19088; Metazoa - 14337; Fungi - 8307; Plants - 1150; Viruses - 0; Other Eukaryotes - 10830 (source: NCBI BLink).  protein_id AT1G18070.1p  transcript_id AT1G18070.1  protein_id AT1G18070.1p  transcript_id AT1G18070.1  
At1g18070	chr1:006214236	0.0	C/6214236-6214294,6214378-6214450,6214585-6214749,6214830-6214894,6215018-6215153,6215239-6215344,6215593-6215743,6215827-6215891,6215979-6216133,6216227-6216289,6216415-6216486,6216629-6216674,6216758-6216869,6217081-6217185,6217294-6217347,6217453-6217503,6217580-6217654,6217737-6217778,6218208-6218211	AT1G18070.2 CDS  gene_syn T10F20.8  go_component vacuole|GO:0005773|15539469|IDA  go_process translational termination|GO:0006415||IEA  go_function translation release factor activity|GO:0003747||IEA  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_function translation factor activity, nucleic acid binding|GO:0008135||ISS  product EF-1-alpha-related GTP-binding protein, putative  note EF-1-alpha-related GTP-binding protein, putative; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation release factor activity, GTPase activity; INVOLVED IN: translational termination; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000), Yeast eukaryotic release factor (InterPro:IPR003285); BEST Arabidopsis thaliana protein match is: elongation factor 1-alpha / EF-1-alpha (TAIR:AT5G60390.3); Has 54271 Blast hits to 54210 proteins in 13560 species: Archae - 559; Bacteria - 19088; Metazoa - 14337; Fungi - 8307; Plants - 1150; Viruses - 0; Other Eukaryotes - 10830 (source: NCBI BLink).  protein_id AT1G18070.2p  transcript_id AT1G18070.2  protein_id AT1G18070.2p  transcript_id AT1G18070.2  
At1g18075	chr1:006220648	0.0	W/6220648-6220833	AT1G18075.1 miRNA  gene_syn MICRORNA 159, MICRORNA 159B, MIR159, MIR159B  gene MIR159B  function Encodes a microRNA that targets several MYB family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUUGGAUUGAAGGGAGCUCUU. Functions redundantly with MIR159A. Plants that are doubly mutated for MIR159AB have curled leaves and reduced stature.  go_component cellular_component|GO:0005575||ND  go_process response to abscisic acid stimulus|GO:0009737|17217461|IEP  go_process negative regulation of abscisic acid mediated signaling|GO:0009788|17217461|IMP  go_process gene silencing by miRNA|GO:0035195|15200956|TAS  go_function molecular_function|GO:0003674||ND  product MIR159B (MICRORNA 159B); miRNA  transcript_id AT1G18075.1  
At1g18080	chr1:006222325	0.0	W/6222325-6223206,6223800-6223901	AT1G18080.1 CDS  gene_syn ATARCA, RACK1A_AT, RECEPTOR FOR ACTIVATED C KINASE 1 A, T10F20.9, WD-40 REPEAT PROTEIN ATARCA  gene ATARCA  function Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene.  go_component chloroplast|GO:0009507|18431481|IDA  go_component cytosolic ribosome|GO:0022626|15734919|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_function nucleotide binding|GO:0000166||ISS  product ATARCA; nucleotide binding  note ATARCA; FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosolic ribosome, chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding (TAIR:AT1G48630.1); Has 63702 Blast hits to 26655 proteins in 706 species: Archae - 76; Bacteria - 6668; Metazoa - 29017; Fungi - 12763; Plants - 6041; Viruses - 3; Other Eukaryotes - 9134 (source: NCBI BLink).  protein_id AT1G18080.1p  transcript_id AT1G18080.1  protein_id AT1G18080.1p  transcript_id AT1G18080.1  
At1g18090	chr1:006224539	0.0	W/6224539-6224616,6224751-6224787,6224974-6225148,6225246-6225324,6225744-6225788,6225866-6226015,6226114-6226228,6226314-6226414,6226500-6226597,6226681-6226773,6226953-6227715	AT1G18090.1 CDS  gene_syn T10F20.10  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product exonuclease, putative  note exonuclease, putative; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: DNA binding / catalytic/ nuclease (TAIR:AT1G29630.2); Has 1583 Blast hits to 1522 proteins in 278 species: Archae - 183; Bacteria - 44; Metazoa - 445; Fungi - 375; Plants - 105; Viruses - 12; Other Eukaryotes - 419 (source: NCBI BLink).  protein_id AT1G18090.1p  transcript_id AT1G18090.1  protein_id AT1G18090.1p  transcript_id AT1G18090.1  
At1g18090	chr1:006224539	0.0	W/6224539-6224616,6224751-6224787,6224974-6225152,6225250-6225324,6225744-6225788,6225866-6226015,6226114-6226228,6226314-6226414,6226500-6226597,6226681-6226773,6226953-6227715	AT1G18090.2 CDS  gene_syn T10F20.10  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_component cellular_component|GO:0005575||ND  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product exonuclease, putative  note exonuclease, putative; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: DNA binding / catalytic/ nuclease (TAIR:AT1G29630.2); Has 1586 Blast hits to 1523 proteins in 279 species: Archae - 183; Bacteria - 46; Metazoa - 450; Fungi - 373; Plants - 103; Viruses - 12; Other Eukaryotes - 419 (source: NCBI BLink).  protein_id AT1G18090.2p  transcript_id AT1G18090.2  protein_id AT1G18090.2p  transcript_id AT1G18090.2  
At1g18100	chr1:006228049	0.0	C/6228049-6228272,6229125-6229165,6229292-6229353,6229916-6230110	AT1G18100.1 CDS  gene_syn E12A11, T10F20.11  gene E12A11  function E12A11 protein (E12A11)  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function phosphatidylethanolamine binding|GO:0008429||ISS  product E12A11; phosphatidylethanolamine binding  note E12A11; FUNCTIONS IN: phosphatidylethanolamine binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: TFL1 (TERMINAL FLOWER 1); phosphatidylethanolamine binding (TAIR:AT5G03840.1); Has 1445 Blast hits to 1445 proteins in 267 species: Archae - 0; Bacteria - 83; Metazoa - 583; Fungi - 128; Plants - 634; Viruses - 3; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G18100.1p  transcript_id AT1G18100.1  protein_id AT1G18100.1p  transcript_id AT1G18100.1  
At1g18120	chr1:006232092	0.0	W/6232092-6233926	AT1G18120.1 pseudogenic_transcript  pseudo  gene_syn T10F20.12  note pseudogene, putative myrosinase-associated protein, blastp match of 46% identity and 1.7e-57 P-value to GP|6522943|emb|CAB62165.1||AJ223307 myrosinase-associated protein {Brassica napus}  
At1g18130	chr1:006235895	0.0	W/6235895-6235942,6238093-6238314,6238410-6238481,6238567-6238638,6238716-6238799	AT1G18130.1 CDS  gene_syn T10F20.13  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_process threonyl-tRNA aminoacylation|GO:0006435||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function threonine-tRNA ligase activity|GO:0004829||IEA  go_function ATP binding|GO:0005524||IEA  go_process translation|GO:0006412||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase-related / tRNA ligase-related  note tRNA synthetase-related / tRNA ligase-related; FUNCTIONS IN: threonine-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, translation; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (TAIR:AT5G26830.1); Has 5832 Blast hits to 5832 proteins in 1604 species: Archae - 175; Bacteria - 2990; Metazoa - 217; Fungi - 159; Plants - 49; Viruses - 0; Other Eukaryotes - 2242 (source: NCBI BLink).  protein_id AT1G18130.1p  transcript_id AT1G18130.1  protein_id AT1G18130.1p  transcript_id AT1G18130.1  
At1g18140	chr1:006238986	0.0	C/6238986-6240103,6240205-6240333,6240564-6240808,6240911-6241062,6241292-6241393	AT1G18140.1 CDS  gene_syn LAC1, Laccase 1, T10F20.14  gene LAC1  function putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process lignin catabolic process|GO:0046274||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function laccase activity|GO:0008471|15940465|ISS  product LAC1 (Laccase 1); laccase  note Laccase 1 (LAC1); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LAC17 (laccase 17); laccase (TAIR:AT5G60020.1); Has 6940 Blast hits to 5714 proteins in 956 species: Archae - 24; Bacteria - 2468; Metazoa - 445; Fungi - 2753; Plants - 889; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).  protein_id AT1G18140.1p  transcript_id AT1G18140.1  protein_id AT1G18140.1p  transcript_id AT1G18140.1  
At1g18150	chr1:006244641	0.0	C/6244641-6244718,6244818-6245016,6245107-6245223,6245311-6245384,6245499-6245636,6245728-6245883,6245996-6246145,6246304-6246363,6246466-6246593,6246686-6247088,6247316-6247582	AT1G18150.1 CDS  gene_syn ATMPK8, T10F20.15  gene ATMPK8  function ATMPK8,  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK8; MAP kinase  note ATMPK8; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK15; MAP kinase/ kinase (TAIR:AT1G73670.1); Has 88039 Blast hits to 87011 proteins in 2587 species: Archae - 43; Bacteria - 7629; Metazoa - 38255; Fungi - 8102; Plants - 16752; Viruses - 530; Other Eukaryotes - 16728 (source: NCBI BLink).  protein_id AT1G18150.1p  transcript_id AT1G18150.1  protein_id AT1G18150.1p  transcript_id AT1G18150.1  
At1g18150	chr1:006244641	0.0	C/6244641-6244718,6244818-6245016,6245107-6245223,6245311-6245384,6245499-6245636,6245728-6245883,6245996-6246145,6246304-6246363,6246466-6246593,6246686-6247088,6247316-6247582	AT1G18150.2 CDS  gene_syn ATMPK8, T10F20.15  gene ATMPK8  function ATMPK8,  go_component plasma membrane|GO:0005886|17317660|IDA  go_process signal transduction|GO:0007165|12119167|IC  go_function MAP kinase activity|GO:0004707|11544109|ISS  go_function MAP kinase activity|GO:0004707|12119167|ISS  product ATMPK8; MAP kinase  note ATMPK8; FUNCTIONS IN: MAP kinase activity; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATMPK15; MAP kinase/ kinase (TAIR:AT1G73670.1); Has 88039 Blast hits to 87011 proteins in 2587 species: Archae - 43; Bacteria - 7629; Metazoa - 38255; Fungi - 8102; Plants - 16752; Viruses - 530; Other Eukaryotes - 16728 (source: NCBI BLink).  protein_id AT1G18150.2p  transcript_id AT1G18150.2  protein_id AT1G18150.2p  transcript_id AT1G18150.2  
At1g18160	chr1:006249126	0.0	W/6249126-6249614,6249771-6250211,6250437-6250540,6250893-6252028,6252106-6252146,6252253-6252321,6252404-6252504,6252695-6252773,6252871-6252969,6253040-6253108,6253309-6253358,6253451-6253627,6253712-6253835	AT1G18160.1 CDS  gene_syn T10F20.16  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein serine/threonine/tyrosine kinase activity|GO:0004712|16429265|ISS  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G73660.1); Has 89958 Blast hits to 88675 proteins in 3367 species: Archae - 41; Bacteria - 7257; Metazoa - 40465; Fungi - 7352; Plants - 18895; Viruses - 448; Other Eukaryotes - 15500 (source: NCBI BLink).  protein_id AT1G18160.1p  transcript_id AT1G18160.1  protein_id AT1G18160.1p  transcript_id AT1G18160.1  
At1g18170	chr1:006254291	0.0	W/6254291-6254622,6254769-6254813,6255141-6255507	AT1G18170.1 CDS  gene_syn T10F20.17  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process protein folding|GO:0006457||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  note immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506 binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT1G73655.1); Has 1824 Blast hits to 1811 proteins in 560 species: Archae - 0; Bacteria - 910; Metazoa - 249; Fungi - 61; Plants - 245; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).  protein_id AT1G18170.1p  transcript_id AT1G18170.1  protein_id AT1G18170.1p  transcript_id AT1G18170.1  
At1g18180	chr1:006255903	0.0	W/6255903-6255953,6256053-6256122,6256259-6256326,6256402-6256463,6256563-6256644,6256761-6256994,6257103-6257231,6257319-6257380,6257477-6257593,6257695-6257737	AT1G18180.1 CDS  gene_syn T10F20.18  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function oxidoreductase activity, acting on the CH-CH group of donors|GO:0016627||IEA  product oxidoreductase, acting on the CH-CH group of donors  note oxidoreductase, acting on the CH-CH group of donors; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: oxidoreductase, acting on the CH-CH group of donors (TAIR:AT1G73650.3); Has 1695 Blast hits to 1695 proteins in 205 species: Archae - 0; Bacteria - 274; Metazoa - 71; Fungi - 102; Plants - 57; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink).  protein_id AT1G18180.1p  transcript_id AT1G18180.1  protein_id AT1G18180.1p  transcript_id AT1G18180.1  
At1g18190	chr1:006257963	0.0	C/6257963-6258328,6258415-6258462,6258552-6258677,6258812-6258904,6259011-6259063,6259195-6259252,6259478-6259537,6259650-6259760,6259875-6260912,6261272-6261325	AT1G18190.1 CDS  gene_syn GC2, T10F20.19, golgin candidate 2  gene GC2  function This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC2 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (508 668 aa) portion of the protein.  go_component Golgi apparatus|GO:0005794|18182439|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GC2 (golgin candidate 2)  note golgin candidate 2 (GC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: GC1 (Golgin Candidate 1) (TAIR:AT2G19950.1); Has 42131 Blast hits to 26494 proteins in 1346 species: Archae - 317; Bacteria - 4238; Metazoa - 22451; Fungi - 3348; Plants - 1430; Viruses - 148; Other Eukaryotes - 10199 (source: NCBI BLink).  protein_id AT1G18190.1p  transcript_id AT1G18190.1  protein_id AT1G18190.1p  transcript_id AT1G18190.1  
At1g18191	chr1:006262054	0.0	C/6262054-6262330	AT1G18191.1 pseudogenic_transcript  pseudo  function Pseudogene of AT1G18200; AtRABA6b (Arabidopsis Rab GTPase homolog A6b); GTP binding  
At1g18200	chr1:006265416	0.0	C/6265416-6265884,6266439-6266659	AT1G18200.1 CDS  gene_syn Arabidopsis Rab GTPase homolog A6b, AtRABA6b, T10F20.21  gene AtRABA6b  go_component intracellular|GO:0005622||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process nucleocytoplasmic transport|GO:0006913||IEA  go_process signal transduction|GO:0007165||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTPase activity|GO:0003924||IEA  go_function protein binding|GO:0005515||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA6b (Arabidopsis Rab GTPase homolog A6b); GTP binding / GTPase/ protein binding  note Arabidopsis Rab GTPase homolog A6b (AtRABA6b); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Ras small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: AtRABA6a (Arabidopsis Rab GTPase homolog A6a); GTP binding (TAIR:AT1G73640.1); Has 21926 Blast hits to 21897 proteins in 616 species: Archae - 19; Bacteria - 105; Metazoa - 12261; Fungi - 2548; Plants - 2001; Viruses - 19; Other Eukaryotes - 4973 (source: NCBI BLink).  protein_id AT1G18200.1p  transcript_id AT1G18200.1  protein_id AT1G18200.1p  transcript_id AT1G18200.1  
At1g18210	chr1:006268273	0.0	C/6268273-6268785	AT1G18210.1 CDS  gene_syn T10F20.22  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT1G73630.1); Has 20845 Blast hits to 12588 proteins in 1300 species: Archae - 0; Bacteria - 141; Metazoa - 8532; Fungi - 4979; Plants - 3879; Viruses - 0; Other Eukaryotes - 3314 (source: NCBI BLink).  protein_id AT1G18210.1p  transcript_id AT1G18210.1  protein_id AT1G18210.1p  transcript_id AT1G18210.1  
At1g18210	chr1:006268273	0.0	C/6268273-6268785	AT1G18210.2 CDS  gene_syn T10F20.22  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT1G73630.1); Has 20845 Blast hits to 12588 proteins in 1300 species: Archae - 0; Bacteria - 141; Metazoa - 8532; Fungi - 4979; Plants - 3879; Viruses - 0; Other Eukaryotes - 3314 (source: NCBI BLink).  protein_id AT1G18210.2p  transcript_id AT1G18210.2  protein_id AT1G18210.2p  transcript_id AT1G18210.2  
At1g18220	chr1:006269670	0.0	C/6269670-6269807	AT1G18220.1 CDS  gene_syn ATPUP9, T10F20.24  gene ATPUP9  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  product ATPUP9; purine transmembrane transporter  note ATPUP9; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G18220.1p  transcript_id AT1G18220.1  protein_id AT1G18220.1p  transcript_id AT1G18220.1  
At1g18230	chr1:006272666	0.0	C/6272666-6273307	AT1G18230.1 pseudogenic_transcript  pseudo  gene_syn T10F20.25  note pseudogene, putative protein kinase  
At1g18240	chr1:006274286	0.0	C/6274286-6275594	AT1G18240.1 mRNA_TE_gene  pseudo  gene_syn T10F20.23  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.2e-154 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g18250	chr1:006277024	0.0	C/6277024-6277372,6277452-6277776,6277948-6278005	AT1G18250.1 CDS  gene_syn ATLP-1  gene ATLP-1  function encodes a thaumatin-like protein  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  product ATLP-1  note ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin-like protein, putative / pathogenesis-related protein, putative (TAIR:AT1G73620.1); Has 1038 Blast hits to 1028 proteins in 140 species: Archae - 0; Bacteria - 14; Metazoa - 47; Fungi - 49; Plants - 919; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G18250.1p  transcript_id AT1G18250.1  protein_id AT1G18250.1p  transcript_id AT1G18250.1  
At1g18250	chr1:006277024	0.0	C/6277024-6277372,6277452-6277779,6277948-6278005	AT1G18250.2 CDS  gene_syn ATLP-1  gene ATLP-1  function encodes a thaumatin-like protein  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  product ATLP-1  note ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin-like protein, putative / pathogenesis-related protein, putative (TAIR:AT1G73620.1); Has 1040 Blast hits to 1028 proteins in 140 species: Archae - 0; Bacteria - 14; Metazoa - 47; Fungi - 49; Plants - 921; Viruses - 2; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G18250.2p  transcript_id AT1G18250.2  protein_id AT1G18250.2p  transcript_id AT1G18250.2  
At1g18260	chr1:006279047	0.0	C/6279047-6279286,6279391-6279633,6279772-6280095,6280603-6280818,6280908-6281399,6281487-6282008	AT1G18260.1 CDS  gene_syn T10O22.22, T10O22_22  go_component membrane|GO:0016020|17432890|IDA  go_function binding|GO:0005488||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  product suppressor of lin-12-like protein-related / sel-1 protein-related  note suppressor of lin-12-like protein-related / sel-1 protein-related; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: suppressor of lin-12-like protein-related / sel-1 protein-related (TAIR:AT1G73570.1); Has 15581 Blast hits to 5419 proteins in 820 species: Archae - 0; Bacteria - 9844; Metazoa - 747; Fungi - 658; Plants - 84; Viruses - 27; Other Eukaryotes - 4221 (source: NCBI BLink).  protein_id AT1G18260.1p  transcript_id AT1G18260.1  protein_id AT1G18260.1p  transcript_id AT1G18260.1  
At1g18265	chr1:006282338	0.0	C/6282338-6283180	AT1G18265.1 CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); Has 1468 Blast hits to 1313 proteins in 94 species: Archae - 2; Bacteria - 30; Metazoa - 135; Fungi - 39; Plants - 179; Viruses - 36; Other Eukaryotes - 1047 (source: NCBI BLink).  protein_id AT1G18265.1p  transcript_id AT1G18265.1  protein_id AT1G18265.1p  transcript_id AT1G18265.1  
At1g18270	chr1:006283634	0.0	C/6283634-6283816,6283970-6284050,6284132-6284239,6284335-6284523,6284618-6284683,6284888-6284962,6285096-6285206,6285279-6285364,6285447-6285591,6285729-6285826,6285924-6286065,6286159-6286206,6286299-6286469,6286591-6286659,6286798-6286917,6287005-6287077,6287199-6287317,6287424-6287543,6287668-6287755,6287911-6288122,6288305-6288351,6288615-6288693,6288768-6288849,6289112-6289249,6289350-6289398,6289486-6289540,6289604-6289680,6289865-6289945,6290021-6290101,6290245-6290320,6290744-6290938,6291073-6291119,6291208-6291286,6291466-6291544,6291925-6292062,6292306-6292354,6292448-6292502,6292630-6292706,6292812-6292892,6292980-6293060,6293296-6293371,6293677-6293772	AT1G18270.1 CDS  gene_syn T10O22.24, T10O22_24  go_component nucleus|GO:0005634|14617066|IDA  go_process glycolysis|GO:0006096||IEA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process valine metabolic process|GO:0006573||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function 3-hydroxyisobutyrate dehydrogenase activity|GO:0008442||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process glycolysis|GO:0006096||ISS  go_function fructose-bisphosphate aldolase activity|GO:0004332||ISS  product ketose-bisphosphate aldolase class-II family protein  note ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein (TAIR:AT1G71170.1); Has 23734 Blast hits to 15244 proteins in 1514 species: Archae - 155; Bacteria - 12217; Metazoa - 512; Fungi - 517; Plants - 221; Viruses - 0; Other Eukaryotes - 10112 (source: NCBI BLink).  protein_id AT1G18270.1p  transcript_id AT1G18270.1  protein_id AT1G18270.1p  transcript_id AT1G18270.1  
At1g18270	chr1:006283634	0.0	C/6283634-6283816,6283970-6284050,6284132-6284239,6284335-6284523,6284618-6284683,6284888-6284962,6285096-6285206,6285279-6285364,6285447-6285591,6285729-6285826,6285924-6286065,6286159-6286206,6286299-6286469,6286591-6286659,6286798-6286917,6287005-6287077,6287199-6287317,6287424-6287543,6287668-6287755,6287911-6288122,6288305-6288351,6288615-6288693,6288768-6288849,6289112-6289249,6289350-6289398,6289486-6289540,6289604-6289680,6289865-6289945,6290021-6290101,6290245-6290320,6290744-6290938,6291073-6291119,6291208-6291286,6291466-6291544,6291925-6292062,6292306-6292354,6292448-6292502,6292630-6292706,6292812-6292892,6292980-6293063,6293296-6293371,6293677-6293772	AT1G18270.2 CDS  gene_syn T10O22.24, T10O22_24  go_process glycolysis|GO:0006096||IEA  go_process pentose-phosphate shunt|GO:0006098||IEA  go_process valine metabolic process|GO:0006573||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function fructose-bisphosphate aldolase activity|GO:0004332||IEA  go_function phosphogluconate dehydrogenase (decarboxylating) activity|GO:0004616||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function 3-hydroxyisobutyrate dehydrogenase activity|GO:0008442||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function coenzyme binding|GO:0050662||IEA  go_process glycolysis|GO:0006096||ISS  go_function fructose-bisphosphate aldolase activity|GO:0004332||ISS  product ketose-bisphosphate aldolase class-II family protein  note ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein (TAIR:AT1G71170.1); Has 23566 Blast hits to 15271 proteins in 1513 species: Archae - 155; Bacteria - 12191; Metazoa - 519; Fungi - 517; Plants - 221; Viruses - 0; Other Eukaryotes - 9963 (source: NCBI BLink).  protein_id AT1G18270.2p  transcript_id AT1G18270.2  protein_id AT1G18270.2p  transcript_id AT1G18270.2  
At1g18280	chr1:006294403	0.0	W/6294403-6294754,6294875-6294940,6295083-6295207	AT1G18280.1 CDS  gene_syn T10O22.25, T10O22_25  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT1G73560.1); Has 322 Blast hits to 320 proteins in 21 species: Archae - 0; Bacteria - 3; Metazoa - 3; Fungi - 0; Plants - 312; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G18280.1p  transcript_id AT1G18280.1  protein_id AT1G18280.1p  transcript_id AT1G18280.1  
At1g18290	chr1:006297436	0.0	W/6297436-6297966	AT1G18290.1 CDS  gene_syn F15H18.19  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: root; Has 43 Blast hits to 43 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18290.1p  transcript_id AT1G18290.1  protein_id AT1G18290.1p  transcript_id AT1G18290.1  
At1g18300	chr1:006299841	0.0	W/6299841-6300031,6300367-6300799	AT1G18300.1 CDS  gene_syn Arabidopsis thaliana Nudix hydrolase homolog 4, F15H18.18, atnudt4  gene atnudt4  go_component cytosol|GO:0005829|15878881|RCA  go_function hydrolase activity|GO:0016787||IEA  go_function hydrolase activity|GO:0016787||ISS  product atnudt4 (Arabidopsis thaliana Nudix hydrolase homolog 4); hydrolase  note Arabidopsis thaliana Nudix hydrolase homolog 4 (atnudt4); FUNCTIONS IN: hydrolase activity; LOCATED IN: cytosol; EXPRESSED IN: stem, root, leaf; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21); hydrolase (TAIR:AT1G73540.1); Has 801 Blast hits to 799 proteins in 226 species: Archae - 1; Bacteria - 254; Metazoa - 216; Fungi - 81; Plants - 132; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G18300.1p  transcript_id AT1G18300.1  protein_id AT1G18300.1p  transcript_id AT1G18300.1  
At1g18310	chr1:006301200	0.0	C/6301200-6301385,6301423-6301578,6301783-6302669,6303165-6303490,6303562-6303956	AT1G18310.1 CDS  gene_syn F15H18.17, F15H18_17  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_function endo-1,3(4)-beta-glucanase activity|GO:0033903||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product glycosyl hydrolase family 81 protein  note glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: cell wall macromolecule catabolic process; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT5G15870.1); Has 263 Blast hits to 258 proteins in 83 species: Archae - 0; Bacteria - 38; Metazoa - 4; Fungi - 118; Plants - 29; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G18310.1p  transcript_id AT1G18310.1  protein_id AT1G18310.1p  transcript_id AT1G18310.1  
At1g18320	chr1:006304472	0.0	W/6304472-6304550,6304916-6304994,6305034-6305106,6305217-6305289,6305446-6305531	AT1G18320.1 CDS  gene_syn F15H18.28, F15H18_28  go_component mitochondrial inner membrane|GO:0005743||IEA  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein  note mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: MEE67 (maternal effect embryo arrest 67); P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT3G10110.1); Has 498 Blast hits to 498 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 159; Plants - 79; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G18320.1p  transcript_id AT1G18320.1  protein_id AT1G18320.1p  transcript_id AT1G18320.1  
At1g18330	chr1:006306196	0.0	C/6306196-6306945,6307028-6307089,6307180-6307291,6307383-6307487,6307629-6307640	AT1G18330.1 CDS  gene_syn EARLY-PHYTOCHROME-RESPONSIVE1, EPR1, F15H18.16, F15H18_16  gene EPR1  function EARLY-PHYTOCHROME-RESPONSIVE1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1); DNA binding / transcription factor  note EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cadmium ion, response to ethylene stimulus, response to salt stress, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G10113.1); Has 879 Blast hits to 868 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 22; Plants - 675; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G18330.1p  transcript_id AT1G18330.1  protein_id AT1G18330.1p  transcript_id AT1G18330.1  
At1g18330	chr1:006306196	0.0	C/6306196-6306945,6307028-6307089,6307180-6307291,6307383-6307487,6307629-6307718	AT1G18330.2 CDS  gene_syn EARLY-PHYTOCHROME-RESPONSIVE1, EPR1, F15H18.16, F15H18_16  gene EPR1  function EARLY-PHYTOCHROME-RESPONSIVE1  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1); DNA binding / transcription factor  note EARLY-PHYTOCHROME-RESPONSIVE1 (EPR1); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to cadmium ion, response to ethylene stimulus, response to salt stress, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Myb-type HTH DNA-binding domain (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT3G10113.1); Has 876 Blast hits to 865 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 17; Plants - 677; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G18330.2p  transcript_id AT1G18330.2  protein_id AT1G18330.2p  transcript_id AT1G18330.2  
At1g18335	chr1:006309428	0.0	C/6309428-6309454,6309588-6309653,6309736-6309778,6309961-6310037,6310154-6310462,6310563-6310642,6311022-6311124,6311222-6311326	AT1G18335.1 CDS  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 224 Blast hits to 221 proteins in 108 species: Archae - 2; Bacteria - 8; Metazoa - 97; Fungi - 51; Plants - 25; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G18335.1p  transcript_id AT1G18335.1  protein_id AT1G18335.1p  transcript_id AT1G18335.1  
At1g18340	chr1:006311612	0.0	C/6311612-6311687,6311779-6311874,6311959-6312035,6312143-6312211,6312296-6312349,6312449-6312494,6312581-6312618,6312812-6312858,6313128-6313410,6313492-6313580,6313704-6313734	AT1G18340.1 CDS  gene_syn F15H18.15, F15H18_15  go_component core TFIIH complex|GO:0000439||IEA  go_process DNA repair|GO:0006281||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function general RNA polymerase II transcription factor activity|GO:0016251||IEA  product basal transcription factor complex subunit-related  note basal transcription factor complex subunit-related; FUNCTIONS IN: general RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: core TFIIH complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb4 (InterPro:IPR004600); Has 258 Blast hits to 253 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 95; Plants - 19; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).  protein_id AT1G18340.1p  transcript_id AT1G18340.1  protein_id AT1G18340.1p  transcript_id AT1G18340.1  
At1g18350	chr1:006315686	0.0	W/6315686-6316609	AT1G18350.1 CDS  gene_syn ATMKK7, BUD1, BUSHY AND DWARF 1, F15H18.14, F15H18_14, MAP KINASE KINASE7, MKK7  gene ATMKK7  function MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance.  go_process defense response to oomycetes|GO:0002229|17908155|IMP  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|17908155|IMP  go_process auxin polar transport|GO:0009926|16377756|IMP  go_process defense response to bacterium|GO:0042742|17908155|IMP  go_function MAP kinase kinase activity|GO:0004708|11875555|TAS  go_function kinase activity|GO:0016301|16377756|IDA  go_function kinase activity|GO:0016301||ISS  product ATMKK7; MAP kinase kinase/ kinase  note ATMKK7; FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: defense response to oomycetes, defense response to bacterium, auxin polar transport, systemic acquired resistance, salicylic acid mediated signaling pathway; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MKK9 (MAP KINASE KINASE 9); MAP kinase kinase/ kinase/ protein kinase activator (TAIR:AT1G73500.1); Has 93181 Blast hits to 92156 proteins in 3410 species: Archae - 67; Bacteria - 8268; Metazoa - 40819; Fungi - 8088; Plants - 18227; Viruses - 442; Other Eukaryotes - 17270 (source: NCBI BLink).  protein_id AT1G18350.1p  transcript_id AT1G18350.1  protein_id AT1G18350.1p  transcript_id AT1G18350.1  
At1g18360	chr1:006316996	0.0	C/6316996-6317397,6317487-6317579,6317654-6317743,6317839-6317903,6318004-6318074,6318158-6318196,6318816-6319204	AT1G18360.1 CDS  gene_syn F15H18.13, F15H18_13  go_component chloroplast|GO:0009507||IEA  go_function hydrolase activity|GO:0016787||ISS  product hydrolase, alpha/beta fold family protein  note hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G73480.1); Has 3797 Blast hits to 3785 proteins in 942 species: Archae - 19; Bacteria - 2420; Metazoa - 132; Fungi - 101; Plants - 246; Viruses - 60; Other Eukaryotes - 819 (source: NCBI BLink).  protein_id AT1G18360.1p  transcript_id AT1G18360.1  protein_id AT1G18360.1p  transcript_id AT1G18360.1  
At1g18370	chr1:006319732	0.0	C/6319732-6320059,6320144-6320472,6320551-6321522,6321615-6321716,6321802-6321912,6322005-6322203,6322302-6322426,6322527-6322586,6322672-6322739,6322833-6322914,6323019-6323135,6323226-6323326,6323406-6323495,6323580-6323820	AT1G18370.1 CDS  gene_syn F15H18.12, F15H18_12, HIK, HINKEL  gene HIK  function Mutant has cytokinesis defects; seedling lethal  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function microtubule motor activity|GO:0003777||ISS  product HIK (HINKEL); ATP binding / microtubule motor  note HINKEL (HIK); FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: response to cyclopentenone; LOCATED IN: microtubule associated complex, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: TES (TETRASPORE); microtubule motor (TAIR:AT3G43210.1); Has 10770 Blast hits to 9838 proteins in 382 species: Archae - 14; Bacteria - 234; Metazoa - 5577; Fungi - 1089; Plants - 962; Viruses - 5; Other Eukaryotes - 2889 (source: NCBI BLink).  protein_id AT1G18370.1p  transcript_id AT1G18370.1  protein_id AT1G18370.1p  transcript_id AT1G18370.1  
At1g18390	chr1:006325876	0.0	W/6325876-6326623,6328429-6328473,6328682-6329319,6329420-6329935	AT1G18390.1 CDS  gene_syn F15H18.25, F15H18_25  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase family protein (TAIR:AT1G66880.1); Has 91764 Blast hits to 90515 proteins in 3355 species: Archae - 55; Bacteria - 7990; Metazoa - 40303; Fungi - 7395; Plants - 19637; Viruses - 531; Other Eukaryotes - 15853 (source: NCBI BLink).  protein_id AT1G18390.1p  transcript_id AT1G18390.1  protein_id AT1G18390.1p  transcript_id AT1G18390.1  
At1g18382	chr1:006326366	0.0	C/6326366-6326699	AT1G18382.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G18380  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G18382.1  
At1g18390	chr1:006327463	0.0	W/6327463-6328219,6328429-6328463,6328663-6329319,6329420-6329935	AT1G18390.2 CDS  gene_syn F15H18.25, F15H18_25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase family protein (TAIR:AT1G66880.1).  protein_id AT1G18390.2p  transcript_id AT1G18390.2  protein_id AT1G18390.2p  transcript_id AT1G18390.2  
At1g18400	chr1:006331464	0.0	W/6331464-6331820,6331924-6332049,6332151-6332216,6332647-6332715,6333000-6333077,6333490-6333576	AT1G18400.1 CDS  gene_syn BEE1, BR Enhanced Expression 1, F15H18.11, F15H18_11  gene BEE1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product BEE1 (BR Enhanced Expression 1); transcription factor  note BR Enhanced Expression 1 (BEE1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BEE3 (BR ENHANCED EXPRESSION 3); DNA binding / transcription factor (TAIR:AT1G73830.1); Has 1122 Blast hits to 1122 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 19; Plants - 1095; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G18400.1p  transcript_id AT1G18400.1  protein_id AT1G18400.1p  transcript_id AT1G18400.1  
At1g18410	chr1:006336528	0.0	C/6336528-6336604,6336717-6336835,6336927-6337237,6337344-6337507,6337589-6337842,6337964-6338123,6338281-6338440,6338525-6338631,6338752-6338931,6339012-6339103,6339207-6339292,6339369-6340088,6340297-6340389,6340463-6340540,6340669-6340752,6340895-6341022,6341106-6341228,6341540-6341600,6341665-6341730,6342101-6342460	AT1G18410.1 CDS  gene_syn F15H18.10, F15H18_10  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin motor protein-related  note kinesin motor protein-related; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding / microtubule motor (TAIR:AT1G73860.1); Has 90134 Blast hits to 48498 proteins in 1716 species: Archae - 814; Bacteria - 8456; Metazoa - 46693; Fungi - 6978; Plants - 3706; Viruses - 341; Other Eukaryotes - 23146 (source: NCBI BLink).  protein_id AT1G18410.1p  transcript_id AT1G18410.1  protein_id AT1G18410.1p  transcript_id AT1G18410.1  
At1g18415	chr1:006343096	0.0	C/6343096-6345662	AT1G18415.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G18420  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G18415.1  
At1g18420	chr1:006343330	0.0	W/6343330-6343511,6343666-6343895,6343983-6344120,6344215-6344484,6344576-6344715,6344817-6344963,6345051-6345689	AT1G18420.1 CDS  gene_syn F15H18.9, F15H18_9  product unknown protein  note CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: AtALMT9 (aluminum-activated malate transporter 9); anion channel (TAIR:AT3G18440.1); Has 336 Blast hits to 334 proteins in 83 species: Archae - 0; Bacteria - 112; Metazoa - 1; Fungi - 9; Plants - 203; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G18420.1p  transcript_id AT1G18420.1  protein_id AT1G18420.1p  transcript_id AT1G18420.1  
At1g18430	chr1:006345764	0.0	W/6345764-6345835	AT1G18430.1 tRNA  gene_syn 51768.TRNA-ASP-1  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G18430.1  
At1g18440	chr1:006345994	0.0	W/6345994-6346332,6346403-6346487,6346709-6346776,6346890-6346940,6347026-6347099,6347279-6347337,6347421-6347497,6347573-6347686	AT1G18440.1 CDS  gene_syn F15H18.24, F15H18_24  go_component chloroplast|GO:0009507|18431481|IDA  go_process translation|GO:0006412||IEA  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||IEA  go_process translation|GO:0006412||ISS  go_function aminoacyl-tRNA hydrolase activity|GO:0004045||ISS  product peptidyl-tRNA hydrolase family protein  note peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 5517 Blast hits to 5515 proteins in 1423 species: Archae - 0; Bacteria - 2880; Metazoa - 37; Fungi - 63; Plants - 75; Viruses - 0; Other Eukaryotes - 2462 (source: NCBI BLink).  protein_id AT1G18440.1p  transcript_id AT1G18440.1  protein_id AT1G18440.1p  transcript_id AT1G18440.1  
At1g18450	chr1:006348199	0.0	W/6348199-6348211,6348301-6348392,6348508-6348672,6348750-6348823,6348899-6348979,6349070-6349130,6349268-6349317,6349460-6349514,6349720-6349797,6349875-6349928,6350003-6350056,6350126-6350186,6350342-6350393,6350742-6350808,6350934-6350996,6351081-6351143,6351240-6351302,6351398-6351462,6351551-6351619,6351721-6351766	AT1G18450.1 CDS  gene_syn ACTIN-RELATED PROTEIN 4, ARP4, ATARP4, F15H18.8, F15H18_8  gene ATARP4  function Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3  UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634|12609034|IDA  go_process establishment or maintenance of chromatin architecture|GO:0006325|12609034|TAS  go_process pollen sperm cell differentiation|GO:0048235|15743449|IMP  go_process long-day photoperiodism, flowering|GO:0048574|15743449|IMP  go_function structural constituent of cytoskeleton|GO:0005200|11891255|ISS  go_function structural constituent of cytoskeleton|GO:0005200||ISS  product ATARP4; structural constituent of cytoskeleton  note ATARP4; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: establishment or maintenance of chromatin architecture, long-day photoperiodism, flowering, pollen sperm cell differentiation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: ACT7 (ACTIN 7); structural constituent of cytoskeleton (TAIR:AT5G09810.1); Has 10303 Blast hits to 10073 proteins in 2218 species: Archae - 2; Bacteria - 253; Metazoa - 4846; Fungi - 2024; Plants - 970; Viruses - 2; Other Eukaryotes - 2206 (source: NCBI BLink).  protein_id AT1G18450.1p  transcript_id AT1G18450.1  protein_id AT1G18450.1p  transcript_id AT1G18450.1  
At1g18460	chr1:006352682	0.0	W/6352682-6352722,6353292-6353465,6353554-6353959,6354039-6354322,6354429-6354497,6354588-6354644,6354725-6354777,6354870-6354945,6355026-6355971	AT1G18460.1 CDS  gene_syn F15H18.6, F15H18_6  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||ISS  product lipase family protein  note lipase family protein; FUNCTIONS IN: lipase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AB-hydrolase associated lipase region (InterPro:IPR006693); BEST Arabidopsis thaliana protein match is: lipase family protein (TAIR:AT1G73920.1); Has 1378 Blast hits to 1358 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 1048; Fungi - 175; Plants - 88; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G18460.1p  transcript_id AT1G18460.1  protein_id AT1G18460.1p  transcript_id AT1G18460.1  
At1g18470	chr1:006356407	0.0	C/6356407-6356485,6356676-6356755,6356855-6356935,6357080-6357149,6357237-6357311,6357402-6357607,6357685-6357934,6358046-6358091,6358232-6358301,6358626-6358695,6358782-6358866,6359159-6359243,6359344-6359434,6359942-6360057	AT1G18470.1 CDS  gene_syn F15H18.5, F15H18_5  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G73950.1); Has 2136 Blast hits to 2130 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 1341; Fungi - 16; Plants - 291; Viruses - 220; Other Eukaryotes - 268 (source: NCBI BLink).  protein_id AT1G18470.1p  transcript_id AT1G18470.1  protein_id AT1G18470.1p  transcript_id AT1G18470.1  
At1g18470	chr1:006356972	0.0	C/6356972-6357149,6357237-6357311,6357402-6357607,6357685-6357934,6358046-6358091,6358232-6358301,6358626-6358695,6358782-6358866,6359159-6359243,6359344-6359434,6359942-6360057	AT1G18470.2 CDS  gene_syn F15H18.5, F15H18_5  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G73950.1); Has 150 Blast hits to 149 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 60; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18470.2p  transcript_id AT1G18470.2  protein_id AT1G18470.2p  transcript_id AT1G18470.2  
At1g18480	chr1:006361639	0.0	W/6361639-6362814	AT1G18480.1 CDS  gene_syn F15H18.29  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product calcineurin-like phosphoesterase family protein  note calcineurin-like phosphoesterase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: calcineurin-like phosphoesterase family protein (TAIR:AT1G07010.1); Has 433 Blast hits to 431 proteins in 108 species: Archae - 12; Bacteria - 139; Metazoa - 0; Fungi - 17; Plants - 53; Viruses - 3; Other Eukaryotes - 209 (source: NCBI BLink).  protein_id AT1G18480.1p  transcript_id AT1G18480.1  protein_id AT1G18480.1p  transcript_id AT1G18480.1  
At1g18485	chr1:006363172	0.0	W/6363172-6366084	AT1G18485.1 CDS  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 16634 Blast hits to 4852 proteins in 154 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 40; Plants - 16325; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT1G18485.1p  transcript_id AT1G18485.1  protein_id AT1G18485.1p  transcript_id AT1G18485.1  
At1g18486	chr1:006366397	0.0	W/6366397-6366753	AT1G18486.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02655.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18486.1p  transcript_id AT1G18486.1  protein_id AT1G18486.1p  transcript_id AT1G18486.1  
At1g18490	chr1:006367116	0.0	W/6367116-6367311,6367735-6367886,6367971-6368139,6368218-6368418,6368510-6368640	AT1G18490.1 CDS  gene_syn F15H18.26, F15H18_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39890.1); Has 239 Blast hits to 239 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G18490.1p  transcript_id AT1G18490.1  protein_id AT1G18490.1p  transcript_id AT1G18490.1  
At1g18500	chr1:006369347	0.0	W/6369347-6370059,6370150-6370363,6370463-6370543,6370888-6370980,6371099-6371185,6371289-6371389,6371612-6371645,6371733-6371807,6372069-6372152,6372243-6372377,6372462-6372607,6372729-6372861	AT1G18500.1 CDS  gene_syn F15H18.3, F15H18_3, IPMS1, ISOPROPYLMALATE SYNTHASE 1, MAML-4, METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4  gene MAML-4  function Encodes an active Arabidopsis isopropylmalate synthase IPMS1. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS1 can be compensated by a second isopropylmalate synthase gene IPMS2 (At1g74040).  go_component chloroplast|GO:0009507|18431481|IDA  go_process leucine biosynthetic process|GO:0009098|17189332|IDA  go_function 2-isopropylmalate synthase activity|GO:0003852|17189332|IDA  product MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4); 2-isopropylmalate synthase  note METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4 (MAML-4); FUNCTIONS IN: 2-isopropylmalate synthase activity; INVOLVED IN: leucine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain (InterPro:IPR013709), Pyruvate carboxyltransferase (InterPro:IPR000891), Bacterial 2-isopropylmalate synthase (InterPro:IPR005671); BEST Arabidopsis thaliana protein match is: IMS1 (2-ISOPROPYLMALATE SYNTHASE 1); 2-isopropylmalate synthase (TAIR:AT1G74040.1); Has 12307 Blast hits to 12303 proteins in 1392 species: Archae - 331; Bacteria - 4783; Metazoa - 186; Fungi - 300; Plants - 180; Viruses - 0; Other Eukaryotes - 6527 (source: NCBI BLink).  protein_id AT1G18500.1p  transcript_id AT1G18500.1  protein_id AT1G18500.1p  transcript_id AT1G18500.1  
At1g18510	chr1:006373295	0.0	W/6373295-6373711,6373791-6374090	AT1G18510.1 CDS  gene_syn F15H18.2, F15H18_2, TET16, TETRASPANIN 16  gene TET16  function Member of TETRASPANIN family  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product TET16 (TETRASPANIN 16)  note TETRASPANIN 16 (TET16); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: TET17 (TETRASPANIN 17) (TAIR:AT1G74045.1); Has 78 Blast hits to 78 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18510.1p  transcript_id AT1G18510.1  protein_id AT1G18510.1p  transcript_id AT1G18510.1  
At1g18520	chr1:006375051	0.0	W/6375051-6375557,6375870-6376178	AT1G18520.1 CDS  gene_syn F15H18.1, F15H18_1, TET11, TETRASPANIN11  gene TET11  function Member of TETRASPANIN family  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process aging|GO:0007568||ISS  go_function molecular_function|GO:0003674||ND  product TET11 (TETRASPANIN11)  note TETRASPANIN11 (TET11); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: TET12 (TETRASPANIN12) (TAIR:AT5G23030.1); Has 207 Blast hits to 207 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18520.1p  transcript_id AT1G18520.1  protein_id AT1G18520.1p  transcript_id AT1G18520.1  
At1g18530	chr1:006376783	0.0	W/6376783-6377256	AT1G18530.1 CDS  gene_syn F25I16.13, F25I16_13  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium ion binding (TAIR:AT3G25600.1); Has 16797 Blast hits to 11750 proteins in 1267 species: Archae - 0; Bacteria - 110; Metazoa - 6973; Fungi - 3810; Plants - 3169; Viruses - 2; Other Eukaryotes - 2733 (source: NCBI BLink).  protein_id AT1G18530.1p  transcript_id AT1G18530.1  protein_id AT1G18530.1p  transcript_id AT1G18530.1  
At1g18540	chr1:006377448	0.0	C/6377448-6377603,6377706-6377887,6377976-6378082,6378292-6378548	AT1G18540.1 CDS  gene_syn F25I16.12, F25I16_12  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component intracellular|GO:0005622||ISS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L6 (RPL6A)  note 60S ribosomal protein L6 (RPL6A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6, N-terminal (InterPro:IPR005568), Ribosomal protein L6E (InterPro:IPR000915); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L6 (RPL6C) (TAIR:AT1G74050.1); Has 549 Blast hits to 548 proteins in 200 species: Archae - 13; Bacteria - 0; Metazoa - 257; Fungi - 97; Plants - 77; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G18540.1p  transcript_id AT1G18540.1  protein_id AT1G18540.1p  transcript_id AT1G18540.1  
At1g18550	chr1:006381656	0.0	C/6381656-6381688,6381804-6382862,6382970-6383062,6383155-6383205,6383312-6383585,6383673-6384340	AT1G18550.1 CDS  gene_syn F25I16.11, F25I16_11  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin motor protein-related (TAIR:AT3G49650.1); Has 8041 Blast hits to 7627 proteins in 242 species: Archae - 0; Bacteria - 13; Metazoa - 4052; Fungi - 966; Plants - 885; Viruses - 0; Other Eukaryotes - 2125 (source: NCBI BLink).  protein_id AT1G18550.1p  transcript_id AT1G18550.1  protein_id AT1G18550.1p  transcript_id AT1G18550.1  
At1g18560	chr1:006385614	0.0	W/6385614-6385653,6385803-6386018,6386113-6386993,6387070-6388005	AT1G18560.1 CDS  gene_syn F25I16.10, F25I16_10  go_function DNA binding|GO:0003677||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA binding / protein dimerization  note DNA binding / protein dimerization; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G42170.1); Has 714 Blast hits to 642 proteins in 72 species: Archae - 0; Bacteria - 2; Metazoa - 122; Fungi - 135; Plants - 440; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G18560.1p  transcript_id AT1G18560.1  protein_id AT1G18560.1p  transcript_id AT1G18560.1  
At1g18570	chr1:006389765	0.0	W/6389765-6389900,6390015-6390144,6390234-6391026	AT1G18570.1 CDS  gene_syn AtMYB51, BW51A, BW51B, F25I16.9, F25I16_9, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB DOMAIN PROTEIN 51, MYB51, myb domain protein 51  gene MYB51  function Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process indole glucosinolate biosynthetic process|GO:0009759|17461791|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB51 (MYB DOMAIN PROTEIN 51); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 51 (MYB51); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 11 processes; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB122 (MYB DOMAIN PROTEIN 122); DNA binding / transcription factor (TAIR:AT1G74080.1); Has 6469 Blast hits to 6009 proteins in 354 species: Archae - 0; Bacteria - 2; Metazoa - 625; Fungi - 319; Plants - 3868; Viruses - 4; Other Eukaryotes - 1651 (source: NCBI BLink).  protein_id AT1G18570.1p  transcript_id AT1G18570.1  protein_id AT1G18570.1p  transcript_id AT1G18570.1  
At1g18580	chr1:006396144	0.0	W/6396144-6396296,6396545-6398005	AT1G18580.1 CDS  gene_syn F25I16.8, F25I16_8, GAUT11, Galacturonosyltransferase 11  gene GAUT11  function Encodes a protein with putative galacturonosyltransferase activity.  go_component mitochondrion|GO:0005739||IEA  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product GAUT11 (Galacturonosyltransferase 11); polygalacturonate 4-alpha-galacturonosyltransferase  note Galacturonosyltransferase 11 (GAUT11); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GAUT10 (GALACTURONOSYLTRANSFERASE 10); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT2G20810.1); Has 233 Blast hits to 233 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 233; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18580.1p  transcript_id AT1G18580.1  protein_id AT1G18580.1p  transcript_id AT1G18580.1  
At1g18590	chr1:006398634	0.0	W/6398634-6399674	AT1G18590.1 CDS  gene_syn ARABIDOPSIS SULFOTRANSFERASE 5C, ATSOT17, ATST5C, F25I16.7, F25I16_7, SOT17, SULFOTRANSFERASE 17  gene SOT17  function encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.  go_component cellular_component|GO:0005575||ND  go_process glucosinolate biosynthetic process|GO:0019761|15358770|IDA  go_function sulfotransferase activity|GO:0008146||ISS  go_function desulfoglucosinolate sulfotransferase activity|GO:0047364|15358770|IDA  product SOT17 (SULFOTRANSFERASE 17); desulfoglucosinolate sulfotransferase/ sulfotransferase  note SULFOTRANSFERASE 17 (SOT17); FUNCTIONS IN: sulfotransferase activity, desulfoglucosinolate sulfotransferase activity; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18); 3-methylthiopropyl-desulfoglucosinolate sulfotransferase/ 4-methylthiobutyl-desulfoglucosinolate sulfotransferase/ 5-methylthiopentyl-desulfoglucosinolate sulfotransferase/ 7-methylthioheptyl-desulfoglucosinolate sulfotransferase/ 8-methylthiooctyl-desulfoglucosinolate sulfotransferase/ desulfoglucosinolate sulfotransferase/ indol-3-yl-methyl-desulfoglucosinolate sulfotransferase/ sulfotransferase (TAIR:AT1G74090.1); Has 2384 Blast hits to 2343 proteins in 153 species: Archae - 0; Bacteria - 181; Metazoa - 1453; Fungi - 1; Plants - 305; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT1G18590.1p  transcript_id AT1G18590.1  protein_id AT1G18590.1p  transcript_id AT1G18590.1  
At1g18600	chr1:006400647	0.0	W/6400647-6401014,6401122-6401242,6401387-6401506,6401657-6401770,6401927-6401971,6402159-6402263,6402353-6402394,6402492-6402587	AT1G18600.1 CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, ATRBL12, F25I16.6, F25I16_6, RBL12  gene RBL12  function Mitochondrion-located rhomboid-like protein  go_component mitochondrion|GO:0005739|18543065|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12 (RBL12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 2292 Blast hits to 2292 proteins in 585 species: Archae - 68; Bacteria - 1162; Metazoa - 97; Fungi - 89; Plants - 39; Viruses - 0; Other Eukaryotes - 837 (source: NCBI BLink).  protein_id AT1G18600.1p  transcript_id AT1G18600.1  protein_id AT1G18600.1p  transcript_id AT1G18600.1  
At1g18610	chr1:006405779	0.0	W/6405779-6405959,6406282-6406431,6406525-6406692,6406907-6407059,6407155-6407307,6407562-6407726,6407829-6407969,6408080-6408266,6408355-6408595,6408706-6408831	AT1G18610.1 CDS  gene_syn F25I16.5, F25I16_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74150.1); Has 8761 Blast hits to 4412 proteins in 271 species: Archae - 12; Bacteria - 304; Metazoa - 4209; Fungi - 851; Plants - 1246; Viruses - 11; Other Eukaryotes - 2128 (source: NCBI BLink).  protein_id AT1G18610.1p  transcript_id AT1G18610.1  protein_id AT1G18610.1p  transcript_id AT1G18610.1  
At1g18620	chr1:006410191	0.0	W/6410191-6410216,6410558-6410690,6410770-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.2 CDS  gene_syn F25I16.3, F25I16_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1732 Blast hits to 1092 proteins in 160 species: Archae - 0; Bacteria - 94; Metazoa - 677; Fungi - 130; Plants - 158; Viruses - 11; Other Eukaryotes - 662 (source: NCBI BLink).  protein_id AT1G18620.2p  transcript_id AT1G18620.2  protein_id AT1G18620.2p  transcript_id AT1G18620.2  
At1g18620	chr1:006410719	0.0	W/6410719-6410854,6411260-6413109,6413237-6413360,6413443-6414269	AT1G18620.1 CDS  gene_syn F25I16.3, F25I16_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 1778 Blast hits to 1081 proteins in 158 species: Archae - 0; Bacteria - 111; Metazoa - 676; Fungi - 128; Plants - 160; Viruses - 6; Other Eukaryotes - 697 (source: NCBI BLink).  protein_id AT1G18620.1p  transcript_id AT1G18620.1  protein_id AT1G18620.1p  transcript_id AT1G18620.1  
At1g18630	chr1:006415226	0.0	W/6415226-6415349,6415473-6415541,6415625-6415731,6416116-6416283	AT1G18630.1 CDS  gene_syn F25I16.4, F25I16_4, GR-RBP6, glycine-rich RNA-binding protein 6  gene GR-RBP6  function encodes a glycine-rich RNA binding protein.  go_component mitochondrion|GO:0005739||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product GR-RBP6 (glycine-rich RNA-binding protein 6); RNA binding / nucleic acid binding / nucleotide binding  note glycine-rich RNA-binding protein 6 (GR-RBP6); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding (TAIR:AT1G74230.1); Has 28425 Blast hits to 16840 proteins in 834 species: Archae - 18; Bacteria - 2282; Metazoa - 15076; Fungi - 2461; Plants - 5898; Viruses - 94; Other Eukaryotes - 2596 (source: NCBI BLink).  protein_id AT1G18630.1p  transcript_id AT1G18630.1  protein_id AT1G18630.1p  transcript_id AT1G18630.1  
At1g18640	chr1:006416524	0.0	C/6416524-6416649,6416733-6416786,6416872-6417021,6417141-6417234,6417502-6417609,6417702-6417834,6418023-6418245	AT1G18640.2 CDS  gene_syn 3-PHOSPHOSERINE PHOSPHATASE, PSP  gene PSP  function 3-phosphoserine phosphatase acting in the last step of serine biosynthesis within the chloroplast  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|10196182|IDA  go_process L-serine biosynthetic process|GO:0006564|10196182|TAS  go_function phosphoserine phosphatase activity|GO:0004647|10196182|IDA  product PSP (3-PHOSPHOSERINE PHOSPHATASE); phosphoserine phosphatase  note 3-PHOSPHOSERINE PHOSPHATASE (PSP); FUNCTIONS IN: phosphoserine phosphatase activity; INVOLVED IN: L-serine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Phosphoserine phosphatase SerB (InterPro:IPR004469), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383); Has 2293 Blast hits to 2293 proteins in 898 species: Archae - 74; Bacteria - 1554; Metazoa - 158; Fungi - 96; Plants - 36; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT1G18640.2p  transcript_id AT1G18640.2  protein_id AT1G18640.2p  transcript_id AT1G18640.2  
At1g18650	chr1:006419036	0.0	C/6419036-6419264,6419426-6419459,6419779-6420018,6420362-6420413	AT1G18650.1 CDS  gene_syn F25I16.1, F25I16_1, PDCB3, PLASMODESMATA CALLOSE-BINDING PROTEIN 3  gene PDCB3  function Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.  go_component plasmodesma|GO:0009506|19223515|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function polysaccharide binding|GO:0030247|19223515|ISS  go_function callose binding|GO:0080087|19223515|ISS  product PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3); callose binding / polysaccharide binding  note PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (PDCB3); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3); callose binding / polysaccharide binding (TAIR:AT5G08000.1); Has 831 Blast hits to 795 proteins in 57 species: Archae - 4; Bacteria - 4; Metazoa - 6; Fungi - 34; Plants - 768; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G18650.1p  transcript_id AT1G18650.1  protein_id AT1G18650.1p  transcript_id AT1G18650.1  
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.1 CDS  gene_syn F6A14.25, F6A14_25  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: ATP-dependent proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain-containing protein (TAIR:AT1G75460.1); Has 9677 Blast hits to 9340 proteins in 1266 species: Archae - 10; Bacteria - 517; Metazoa - 6039; Fungi - 629; Plants - 853; Viruses - 70; Other Eukaryotes - 1559 (source: NCBI BLink).  protein_id AT1G18660.1p  transcript_id AT1G18660.1  protein_id AT1G18660.1p  transcript_id AT1G18660.1  
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.2 CDS  gene_syn F6A14.25, F6A14_25  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: ATP-dependent proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain-containing protein (TAIR:AT1G75460.1); Has 9677 Blast hits to 9340 proteins in 1266 species: Archae - 10; Bacteria - 517; Metazoa - 6039; Fungi - 629; Plants - 853; Viruses - 70; Other Eukaryotes - 1559 (source: NCBI BLink).  protein_id AT1G18660.2p  transcript_id AT1G18660.2  protein_id AT1G18660.2p  transcript_id AT1G18660.2  
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425414,6425506-6425565	AT1G18660.3 CDS  gene_syn F6A14.25, F6A14_25  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: ATP-dependent proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain-containing protein (TAIR:AT1G75460.1); Has 9677 Blast hits to 9340 proteins in 1266 species: Archae - 10; Bacteria - 517; Metazoa - 6039; Fungi - 629; Plants - 853; Viruses - 70; Other Eukaryotes - 1559 (source: NCBI BLink).  protein_id AT1G18660.3p  transcript_id AT1G18660.3  protein_id AT1G18660.3p  transcript_id AT1G18660.3  
At1g18660	chr1:006421433	0.0	W/6421433-6421501,6421644-6421745,6422098-6422180,6422359-6422443,6422528-6422614,6422729-6422790,6422883-6423073,6423160-6423220,6423329-6423506,6423839-6423877,6423971-6424032,6424136-6424172,6424333-6424382,6424645-6424711,6424793-6424871,6425193-6425272,6425346-6425489	AT1G18660.4 CDS  gene_syn F6A14.25, F6A14_25  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, ATP-dependent peptidase activity, binding, zinc ion binding; INVOLVED IN: ATP-dependent proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Tetratricopeptide-like helical (InterPro:IPR011990), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 9647 Blast hits to 9310 proteins in 1249 species: Archae - 10; Bacteria - 482; Metazoa - 6037; Fungi - 629; Plants - 853; Viruses - 70; Other Eukaryotes - 1566 (source: NCBI BLink).  protein_id AT1G18660.4p  transcript_id AT1G18660.4  protein_id AT1G18660.4p  transcript_id AT1G18660.4  
At1g18670	chr1:006427242	0.0	C/6427242-6427261,6427354-6427486,6427973-6428512,6428625-6428715,6428902-6428999,6429126-6429359,6429494-6429814,6429914-6430198,6430289-6430696	AT1G18670.1 CDS  gene_syn F6A14.22, F6A14_22, IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1  gene IBS1  function Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note IMPAIRED IN BABA-INDUCED STERILITY 1 (IBS1); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G74330.2); Has 88728 Blast hits to 87625 proteins in 2989 species: Archae - 39; Bacteria - 7411; Metazoa - 39016; Fungi - 8293; Plants - 17045; Viruses - 404; Other Eukaryotes - 16520 (source: NCBI BLink).  protein_id AT1G18670.1p  transcript_id AT1G18670.1  protein_id AT1G18670.1p  transcript_id AT1G18670.1  
At1g18680	chr1:006432133	0.0	C/6432133-6432275,6432917-6433039,6433140-6433434	AT1G18680.1 CDS  gene_syn F6A14.21, F6A14_21  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function endonuclease activity|GO:0004519||IEA  go_function nucleic acid binding|GO:0003676||ISS  go_function endonuclease activity|GO:0004519||ISS  product HNH endonuclease domain-containing protein  note HNH endonuclease domain-containing protein; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); BEST Arabidopsis thaliana protein match is: HNH endonuclease domain-containing protein (TAIR:AT3G47490.1); Has 51 Blast hits to 51 proteins in 15 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G18680.1p  transcript_id AT1G18680.1  protein_id AT1G18680.1p  transcript_id AT1G18680.1  
At1g18690	chr1:006435153	0.0	W/6435153-6436694	AT1G18690.1 CDS  gene_syn F6A14.20, F6A14_20  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product transferase/ transferase, transferring glycosyl groups  note transferase/ transferase, transferring glycosyl groups; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: XXT5 (XYLOGLUCAN XYLOSYLTRANSFERASE 5); transferase/ transferase, transferring glycosyl groups / xyloglucan 6-xylosyltransferase (TAIR:AT1G74380.1); Has 287 Blast hits to 283 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 97; Plants - 174; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G18690.1p  transcript_id AT1G18690.1  protein_id AT1G18690.1p  transcript_id AT1G18690.1  
At1g18700	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439896-6439938,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.3 CDS  gene_syn F6A14.19, F6A14_19  go_function heat shock protein binding|GO:0031072||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336).  protein_id AT1G18700.3p  transcript_id AT1G18700.3  protein_id AT1G18700.3p  transcript_id AT1G18700.3  
At1g18700	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443029,6443783-6443814	AT1G18700.2 CDS  gene_syn F6A14.19, F6A14_19  go_function heat shock protein binding|GO:0031072||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336); Has 254 Blast hits to 252 proteins in 64 species: Archae - 0; Bacteria - 8; Metazoa - 166; Fungi - 15; Plants - 28; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G18700.2p  transcript_id AT1G18700.2  protein_id AT1G18700.2p  transcript_id AT1G18700.2  
At1g18700	chr1:006437591	0.0	W/6437591-6437729,6437844-6437913,6438165-6438207,6438297-6438374,6438488-6438572,6438676-6438758,6439115-6439172,6439530-6439640,6439973-6440030,6440189-6440285,6440710-6440745,6440913-6441049,6441208-6441278,6441365-6441418,6441567-6441709,6441803-6441943,6442102-6442341,6442427-6442486,6442568-6442825,6442906-6443046	AT1G18700.1 CDS  gene_syn F6A14.19, F6A14_19  go_function heat shock protein binding|GO:0031072||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336); Has 254 Blast hits to 252 proteins in 64 species: Archae - 0; Bacteria - 8; Metazoa - 166; Fungi - 15; Plants - 28; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G18700.1p  transcript_id AT1G18700.1  protein_id AT1G18700.1p  transcript_id AT1G18700.1  
At1g18710	chr1:006450781	0.0	W/6450781-6450913,6452076-6452205,6452446-6452986	AT1G18710.1 CDS  gene_syn AtMYB47, F6A14.18, F6A14_18, myb domain protein 47  gene AtMYB47  function Member of the R2R3 factor gene family.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtMYB47 (myb domain protein 47); DNA binding / transcription factor  note myb domain protein 47 (AtMYB47); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to jasmonic acid stimulus, response to salt stress, regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: leaf lamina base, stem, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB95 (myb domain protein 95); DNA binding / transcription factor (TAIR:AT1G74430.1); Has 6120 Blast hits to 5627 proteins in 350 species: Archae - 0; Bacteria - 0; Metazoa - 663; Fungi - 316; Plants - 3566; Viruses - 3; Other Eukaryotes - 1572 (source: NCBI BLink).  protein_id AT1G18710.1p  transcript_id AT1G18710.1  protein_id AT1G18710.1p  transcript_id AT1G18710.1  
At1g18720	chr1:006458020	0.0	C/6458020-6458142,6458272-6458343,6458451-6458513,6459296-6459658	AT1G18720.1 CDS  gene_syn F6A14.17, F6A14_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74440.1); Has 448 Blast hits to 448 proteins in 205 species: Archae - 0; Bacteria - 250; Metazoa - 0; Fungi - 92; Plants - 47; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G18720.1p  transcript_id AT1G18720.1  protein_id AT1G18720.1p  transcript_id AT1G18720.1  
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460896-6461073,6461174-6461229,6461318-6461389,6461994-6462107	AT1G18730.1 CDS  gene_syn F6A14.16, F6A14_16, NDF6, NDH DEPENDENT FLOW 6  gene NDF6  function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS  go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS  go_function molecular_function|GO:0003674||ND  product NDF6 (NDH DEPENDENT FLOW 6)  note NDH DEPENDENT FLOW 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18730.1p  transcript_id AT1G18730.1  protein_id AT1G18730.1p  transcript_id AT1G18730.1  
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461389,6461844-6461849	AT1G18730.2 CDS  gene_syn F6A14.16, F6A14_16, NDF6, NDH DEPENDENT FLOW 6  gene NDF6  function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS  go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS  go_function molecular_function|GO:0003674||ND  product NDF6 (NDH DEPENDENT FLOW 6)  note NDH DEPENDENT FLOW 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18730.2p  transcript_id AT1G18730.2  protein_id AT1G18730.2p  transcript_id AT1G18730.2  
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461389,6461994-6462107	AT1G18730.3 CDS  gene_syn F6A14.16, F6A14_16, NDF6, NDH DEPENDENT FLOW 6  gene NDF6  function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS  go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS  go_function molecular_function|GO:0003674||ND  product NDF6 (NDH DEPENDENT FLOW 6)  note NDH DEPENDENT FLOW 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18730.3p  transcript_id AT1G18730.3  protein_id AT1G18730.3p  transcript_id AT1G18730.3  
At1g18730	chr1:006460625	0.0	W/6460625-6460690,6460767-6460808,6460899-6461073,6461174-6461229,6461318-6461464	AT1G18730.4 CDS  gene_syn F6A14.16, F6A14_16, NDF6, NDH DEPENDENT FLOW 6  gene NDF6  function likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component NAD(P)H dehydrogenase complex (plastoquinone)|GO:0010598|18535009|NAS  go_process photosynthetic electron transport in photosystem I|GO:0009773|18535009|TAS  go_function molecular_function|GO:0003674||ND  product NDF6 (NDH DEPENDENT FLOW 6)  note NDH DEPENDENT FLOW 6 (NDF6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18730.4p  transcript_id AT1G18730.4  protein_id AT1G18730.4p  transcript_id AT1G18730.4  
At1g18735	chr1:006461232	0.0	C/6461232-6461752	AT1G18735.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G18730  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G18735.1  
At1g18740	chr1:006464125	0.0	W/6464125-6465273	AT1G18740.1 CDS  gene_syn F6A14.15, F6A14_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF793 (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74450.1); Has 97 Blast hits to 97 proteins in 13 species: Archae - 3; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18740.1p  transcript_id AT1G18740.1  protein_id AT1G18740.1p  transcript_id AT1G18740.1  
At1g18750	chr1:006467266	0.0	W/6467266-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469640	AT1G18750.1 CDS  gene_syn AGAMOUS-LIKE 65, AGL65, F6A14.14, F6A14_14  gene AGL65  function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.  go_component nucleus|GO:0005634||IEA  go_process pollen development|GO:0009555|19211705|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL65 (AGAMOUS-LIKE 65); DNA binding / transcription factor  note AGAMOUS-LIKE 65 (AGL65); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G03060.2); Has 4971 Blast hits to 4905 proteins in 584 species: Archae - 0; Bacteria - 0; Metazoa - 788; Fungi - 252; Plants - 3590; Viruses - 0; Other Eukaryotes - 341 (source: NCBI BLink).  protein_id AT1G18750.1p  transcript_id AT1G18750.1  protein_id AT1G18750.1p  transcript_id AT1G18750.1  
At1g18750	chr1:006467404	0.0	W/6467404-6467450,6467898-6467957,6468057-6468075,6468166-6468230,6468321-6468336,6468436-6468497,6468596-6468692,6468809-6468859,6468949-6469085,6469163-6469601,6469687-6469698	AT1G18750.2 CDS  gene_syn AGAMOUS-LIKE 65, AGL65, F6A14.14, F6A14_14  gene AGL65  function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.  go_process pollen development|GO:0009555|19211705|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  product AGL65 (AGAMOUS-LIKE 65); DNA binding / transcription factor  note AGAMOUS-LIKE 65 (AGL65); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: pollen development; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G03060.2); Has 698 Blast hits to 619 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 41; Plants - 74; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT1G18750.2p  transcript_id AT1G18750.2  protein_id AT1G18750.2p  transcript_id AT1G18750.2  
At1g18760	chr1:006471150	0.0	C/6471150-6471824	AT1G18760.1 CDS  gene_syn F6A14.13, F6A14_13  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G13228.1); Has 5901 Blast hits to 5887 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 2055; Fungi - 452; Plants - 2308; Viruses - 76; Other Eukaryotes - 1010 (source: NCBI BLink).  protein_id AT1G18760.1p  transcript_id AT1G18760.1  protein_id AT1G18760.1p  transcript_id AT1G18760.1  
At1g18770	chr1:006473370	0.0	C/6473370-6473592,6473951-6474048	AT1G18770.1 CDS  gene_syn F6A14.24, F6A14_24  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G18760.1); Has 5843 Blast hits to 5827 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 2158; Fungi - 406; Plants - 2265; Viruses - 68; Other Eukaryotes - 946 (source: NCBI BLink).  protein_id AT1G18770.1p  transcript_id AT1G18770.1  protein_id AT1G18770.1p  transcript_id AT1G18770.1  
At1g18773	chr1:006474948	0.0	W/6474948-6475019,6475108-6475215,6475381-6475398	AT1G18773.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1); carboxylesterase (TAIR:AT4G22300.1); Has 30 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18773.1p  transcript_id AT1G18773.1  protein_id AT1G18773.1p  transcript_id AT1G18773.1  
At1g18780	chr1:006476258	0.0	C/6476258-6477235	AT1G18780.1 CDS  gene_syn F6A14.12, F6A14_12  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT2G29840.1); Has 5937 Blast hits to 5927 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 2268; Fungi - 426; Plants - 2218; Viruses - 19; Other Eukaryotes - 1006 (source: NCBI BLink).  protein_id AT1G18780.1p  transcript_id AT1G18780.1  protein_id AT1G18780.1p  transcript_id AT1G18780.1  
At1g18790	chr1:006478851	0.0	C/6478851-6479111,6479328-6479644,6479717-6479850,6479946-6480043	AT1G18790.1 CDS  gene_syn F6A14.11, F6A14_11  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G74480.1); Has 305 Blast hits to 303 proteins in 39 species: Archae - 0; Bacteria - 12; Metazoa - 67; Fungi - 0; Plants - 210; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G18790.1p  transcript_id AT1G18790.1  protein_id AT1G18790.1p  transcript_id AT1G18790.1  
At1g18800	chr1:006481466	0.0	C/6481466-6481525,6481747-6481794,6481891-6481950,6482037-6482100,6482223-6482284,6482377-6482490,6482614-6482685,6482774-6482824,6482920-6483042,6483347-6483463	AT1G18800.1 CDS  gene_syn F6A14.10, F6A14_10, NAP1-RELATED PROTEIN 2, NRP2  gene NRP2  function Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleus|GO:0005634|17122067|IDA  go_component nucleus|GO:0005634||ISS  go_component cytoplasm|GO:0005737|17122067|IDA  go_process nucleosome assembly|GO:0006334||ISS  go_process cell proliferation|GO:0008283|17122067|IGI  go_process lateral root formation|GO:0010311|17122067|IGI  go_process cell differentiation|GO:0030154|17122067|IGI  go_function DNA binding|GO:0003677||ISS  go_function chromatin binding|GO:0003682|17122067|IPI  go_function histone binding|GO:0042393|17122067|IPI  product NRP2 (NAP1-RELATED PROTEIN 2); DNA binding / chromatin binding / histone binding  note NAP1-RELATED PROTEIN 2 (NRP2); FUNCTIONS IN: chromatin binding, histone binding, DNA binding; INVOLVED IN: cell differentiation, cell proliferation, nucleosome assembly, lateral root formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NRP1 (NAP1-RELATED PROTEIN 1); DNA binding / chromatin binding / histone binding (TAIR:AT1G74560.2); Has 4033 Blast hits to 3213 proteins in 314 species: Archae - 6; Bacteria - 136; Metazoa - 1688; Fungi - 610; Plants - 242; Viruses - 97; Other Eukaryotes - 1254 (source: NCBI BLink).  protein_id AT1G18800.1p  transcript_id AT1G18800.1  protein_id AT1G18800.1p  transcript_id AT1G18800.1  
At1g18810	chr1:006485709	0.0	C/6485709-6486872	AT1G18810.1 CDS  gene_syn F6A14.9, F6A14_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product phytochrome kinase substrate-related  note phytochrome kinase substrate-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: PKS1 (PHYTOCHROME KINASE SUBSTRATE 1); protein binding (TAIR:AT2G02950.1); Has 438 Blast hits to 361 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 83; Fungi - 9; Plants - 60; Viruses - 2; Other Eukaryotes - 282 (source: NCBI BLink).  protein_id AT1G18810.1p  transcript_id AT1G18810.1  protein_id AT1G18810.1p  transcript_id AT1G18810.1  
At1g18820	chr1:006488655	0.0	W/6488655-6488735	AT1G18820.1 tRNA  gene_syn 51806.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAG)  transcript_id AT1G18820.1  
At1g18830	chr1:006489309	0.0	W/6489309-6489604,6489693-6489747,6489833-6489949,6490031-6490127,6490224-6490260,6490357-6490456,6490542-6490599,6490678-6490775,6490883-6491002,6491237-6491260,6491347-6491487,6491574-6491701,6491797-6492196,6492287-6492379,6492486-6492671,6492760-6492973,6493067-6493128,6493208-6493342,6493430-6493640,6493773-6494017,6494126-6494218	AT1G18830.1 CDS  gene_syn F6A14.8, F6A14_8  go_component endomembrane system|GO:0012505||IEA  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT3G63460.1); Has 10194 Blast hits to 7963 proteins in 329 species: Archae - 12; Bacteria - 1217; Metazoa - 4210; Fungi - 2289; Plants - 1067; Viruses - 0; Other Eukaryotes - 1399 (source: NCBI BLink).  protein_id AT1G18830.1p  transcript_id AT1G18830.1  protein_id AT1G18830.1p  transcript_id AT1G18830.1  
At1g18835	chr1:006496106	0.0	C/6496106-6496372	AT1G18835.1 CDS  gene_syn MIF3, MINI ZINC FINGER  gene MIF3  product MIF3 (MINI ZINC FINGER)  note MINI ZINC FINGER (MIF3); CONTAINS InterPro DOMAIN/s: ZF-HD homeobox protein Cys/His-rich dimerisation region (InterPro:IPR006456); BEST Arabidopsis thaliana protein match is: MIF1 (MINI ZINC FINGER 1); DNA binding / transcription factor (TAIR:AT1G74660.1); Has 225 Blast hits to 225 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18835.1p  transcript_id AT1G18835.1  protein_id AT1G18835.1p  transcript_id AT1G18835.1  
At1g18840	chr1:006501068	0.0	C/6501068-6501099,6501193-6502222,6502303-6502383,6502469-6502675,6502793-6503080,6503355-6503435	AT1G18840.1 CDS  gene_syn F6A14.7, F6A14_7, IQD30  gene IQD30  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD30; calmodulin binding  note IQD30; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD31 (IQ-domain 31); calmodulin binding (TAIR:AT1G74690.1); Has 2925 Blast hits to 2231 proteins in 269 species: Archae - 4; Bacteria - 220; Metazoa - 845; Fungi - 205; Plants - 455; Viruses - 13; Other Eukaryotes - 1183 (source: NCBI BLink).  protein_id AT1G18840.1p  transcript_id AT1G18840.1  protein_id AT1G18840.1p  transcript_id AT1G18840.1  
At1g18840	chr1:006501068	0.0	C/6501068-6501099,6501193-6502222,6502303-6502383,6502469-6502675,6502793-6503080,6503355-6503435	AT1G18840.2 CDS  gene_syn F6A14.7, F6A14_7, IQD30  gene IQD30  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product IQD30; calmodulin binding  note IQD30; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD31 (IQ-domain 31); calmodulin binding (TAIR:AT1G74690.1); Has 2925 Blast hits to 2231 proteins in 269 species: Archae - 4; Bacteria - 220; Metazoa - 845; Fungi - 205; Plants - 455; Viruses - 13; Other Eukaryotes - 1183 (source: NCBI BLink).  protein_id AT1G18840.2p  transcript_id AT1G18840.2  protein_id AT1G18840.2p  transcript_id AT1G18840.2  
At1g18850	chr1:006504928	0.0	C/6504928-6506127	AT1G18850.1 CDS  gene_syn F6A14.6, F6A14_6  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 22 Blast hits to 22 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G18850.1p  transcript_id AT1G18850.1  protein_id AT1G18850.1p  transcript_id AT1G18850.1  
At1g18860	chr1:006509494	0.0	W/6509494-6510060,6510247-6510360,6510448-6511209	AT1G18860.1 CDS  gene_syn AtWRKY61, F6A14.5, F6A14_5, WRKY61  gene WRKY61  function member of WRKY Transcription Factor; Group II-b  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY61; transcription factor  note WRKY61; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY72; transcription factor (TAIR:AT5G15130.1); Has 3945 Blast hits to 2234 proteins in 195 species: Archae - 0; Bacteria - 24; Metazoa - 259; Fungi - 87; Plants - 1993; Viruses - 1; Other Eukaryotes - 1581 (source: NCBI BLink).  protein_id AT1G18860.1p  transcript_id AT1G18860.1  protein_id AT1G18860.1p  transcript_id AT1G18860.1  
At1g18870	chr1:006515486	0.0	W/6515486-6515611,6515722-6515910,6516504-6516739,6516833-6516950,6517030-6517146,6517226-6517372,6517450-6517524,6517625-6517693,6517790-6517908,6518004-6518061,6518228-6518338,6518542-6518626,6518761-6518858,6518941-6519033,6519129-6519176	AT1G18870.1 CDS  gene_syn F6A14.3, F6A14_3, ICS2, ISOCHORISMATE SYNTHASE 2  gene ICS2  function Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene s function suggest that its function is redundant with that of ICS1 (AT1G7410).  go_component plastid|GO:0009536|18451262|IDA  go_process phylloquinone biosynthetic process|GO:0042372|16617180|IMP  go_process phylloquinone biosynthetic process|GO:0042372|18451262|IMP  go_function isochorismate synthase activity|GO:0008909|18451262|IMP  product ICS2 (ISOCHORISMATE SYNTHASE 2); isochorismate synthase  note ISOCHORISMATE SYNTHASE 2 (ICS2); FUNCTIONS IN: isochorismate synthase activity; INVOLVED IN: phylloquinone biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate binding, C-terminal (InterPro:IPR015890), Anthranilate synthase component I and chorismate binding protein (InterPro:IPR005801), Isochorismate synthase (InterPro:IPR004561); BEST Arabidopsis thaliana protein match is: isochorismate synthase 1 (ICS1) / isochorismate mutase (TAIR:AT1G74710.1); Has 9036 Blast hits to 9034 proteins in 1331 species: Archae - 159; Bacteria - 5491; Metazoa - 4; Fungi - 167; Plants - 126; Viruses - 0; Other Eukaryotes - 3089 (source: NCBI BLink).  protein_id AT1G18870.1p  transcript_id AT1G18870.1  protein_id AT1G18870.1p  transcript_id AT1G18870.1  
At1g18870	chr1:006515746	0.0	W/6515746-6515910,6516504-6516739,6516833-6516950,6517030-6517146,6517226-6517372,6517450-6517524,6517625-6517693,6517790-6517908,6518004-6518061,6518228-6518338,6518542-6518626,6518761-6518858,6518941-6519033,6519129-6519176	AT1G18870.2 CDS  gene_syn F6A14.3, F6A14_3, ICS2, ISOCHORISMATE SYNTHASE 2  gene ICS2  function Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene s function suggest that its function is redundant with that of ICS1 (AT1G7410).  go_component plastid|GO:0009536|18451262|IDA  go_process phylloquinone biosynthetic process|GO:0042372|16617180|IMP  go_process phylloquinone biosynthetic process|GO:0042372|18451262|IMP  go_function isochorismate synthase activity|GO:0008909|18451262|IMP  product ICS2 (ISOCHORISMATE SYNTHASE 2); isochorismate synthase  note ISOCHORISMATE SYNTHASE 2 (ICS2); FUNCTIONS IN: isochorismate synthase activity; INVOLVED IN: phylloquinone biosynthetic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chorismate binding, C-terminal (InterPro:IPR015890), Anthranilate synthase component I and chorismate binding protein (InterPro:IPR005801), Isochorismate synthase (InterPro:IPR004561); BEST Arabidopsis thaliana protein match is: isochorismate synthase 1 (ICS1) / isochorismate mutase (TAIR:AT1G74710.1).  protein_id AT1G18870.2p  transcript_id AT1G18870.2  protein_id AT1G18870.2p  transcript_id AT1G18870.2  
At1g18871	chr1:006519309	0.0	C/6519309-6519485	AT1G18871.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G18871.1p  transcript_id AT1G18871.1  protein_id AT1G18871.1p  transcript_id AT1G18871.1  
At1g18880	chr1:006520800	0.0	W/6520800-6520890,6521395-6521612,6521710-6522263,6522341-6523241	AT1G18880.1 CDS  gene_syn F6A14.2, F6A14_2  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT5G62680.1); Has 2446 Blast hits to 2303 proteins in 404 species: Archae - 0; Bacteria - 410; Metazoa - 511; Fungi - 250; Plants - 1134; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G18880.1p  transcript_id AT1G18880.1  protein_id AT1G18880.1p  transcript_id AT1G18880.1  
At1g18879	chr1:006520941	0.0	W/6520941-6521124	AT1G18879.1 miRNA  gene_syn MICRORNA837A, MIR837A  gene MIR837A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: AUCAGUUUCUUGUUCGUUUCA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR837A (MICRORNA837A); miRNA  transcript_id AT1G18879.1  
At1g18890	chr1:006523468	0.0	C/6523468-6523641,6523759-6523989,6524082-6524249,6524358-6524473,6524563-6524715,6524808-6524951,6525085-6525736	AT1G18890.1 CDS  gene_syn ATCDPK1, CALCIUM-DEPENDENT PROTEIN KINASE, CALCIUM-DEPENDENT PROTEIN KINASE 1, CPK10, F6A14.1, F6A14_1  gene ATCDPK1  function encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro.  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process response to water deprivation|GO:0009414|8078458|IEP  go_process response to salt stress|GO:0009651|8078458|IEP  go_process abscisic acid mediated signaling|GO:0009738|8943201|TAS  go_function protein kinase activity|GO:0004672|8943201|TAS  go_function calmodulin-dependent protein kinase activity|GO:0004683||ISS  go_function kinase activity|GO:0016301||ISS  product ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1); calmodulin-dependent protein kinase/ kinase/ protein kinase  note CALCIUM-DEPENDENT PROTEIN KINASE 1 (ATCDPK1); FUNCTIONS IN: protein kinase activity, calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: response to salt stress, response to water deprivation, abscisic acid mediated signaling, protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-HAND 1 (InterPro:IPR018247), Serine/threonine protein kinase (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30); calmodulin-dependent protein kinase/ kinase/ protein kinase (TAIR:AT1G74740.1); Has 93435 Blast hits to 89071 proteins in 2648 species: Archae - 70; Bacteria - 7997; Metazoa - 39757; Fungi - 11712; Plants - 14525; Viruses - 394; Other Eukaryotes - 18980 (source: NCBI BLink).  protein_id AT1G18890.1p  transcript_id AT1G18890.1  protein_id AT1G18890.1p  transcript_id AT1G18890.1  
At1g18900	chr1:006529778	0.0	W/6529778-6532360	AT1G18900.1 CDS  gene_syn F14D16.2, F14D16_2  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74750.1); Has 22701 Blast hits to 5970 proteins in 182 species: Archae - 4; Bacteria - 22; Metazoa - 565; Fungi - 514; Plants - 20647; Viruses - 0; Other Eukaryotes - 949 (source: NCBI BLink).  protein_id AT1G18900.1p  transcript_id AT1G18900.1  protein_id AT1G18900.1p  transcript_id AT1G18900.1  
At1g18900	chr1:006529778	0.0	W/6529778-6532360	AT1G18900.2 CDS  gene_syn F14D16.2, F14D16_2  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74750.1); Has 22701 Blast hits to 5970 proteins in 182 species: Archae - 4; Bacteria - 22; Metazoa - 565; Fungi - 514; Plants - 20647; Viruses - 0; Other Eukaryotes - 949 (source: NCBI BLink).  protein_id AT1G18900.2p  transcript_id AT1G18900.2  protein_id AT1G18900.2p  transcript_id AT1G18900.2  
At1g18910	chr1:006532706	0.0	C/6532706-6532807,6532900-6532971,6533148-6533207,6533304-6533538,6533632-6533766,6533852-6534073,6534212-6535854,6535978-6536203,6536316-6536671,6536753-6536947,6537045-6537263,6537694-6537993	AT1G18910.1 CDS  gene_syn F14D16.31, F14D16_31  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G74770.1); Has 1162 Blast hits to 1080 proteins in 155 species: Archae - 0; Bacteria - 6; Metazoa - 545; Fungi - 104; Plants - 295; Viruses - 2; Other Eukaryotes - 210 (source: NCBI BLink).  protein_id AT1G18910.1p  transcript_id AT1G18910.1  protein_id AT1G18910.1p  transcript_id AT1G18910.1  
At1g18930	chr1:006542872	0.0	W/6542872-6543247	AT1G18930.1 mRNA_TE_gene  pseudo  gene_syn F14D16.7, F14D16_7  note Transposable element gene, pseudogene, hypothetical protein  
At1g18940	chr1:006543852	0.0	W/6543852-6544328,6544489-6545592	AT1G18940.1 CDS  gene_syn F14D16.8, F14D16_8  go_component endomembrane system|GO:0012505||IEA  product nodulin family protein  note nodulin family protein; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nodulin family protein (TAIR:AT1G74780.1); Has 1313 Blast hits to 1279 proteins in 365 species: Archae - 5; Bacteria - 537; Metazoa - 33; Fungi - 164; Plants - 319; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G18940.1p  transcript_id AT1G18940.1  protein_id AT1G18940.1p  transcript_id AT1G18940.1  
At1g18950	chr1:006546539	0.0	W/6546539-6546979,6547091-6547201,6548182-6548268,6548358-6548395,6548475-6548556,6548843-6548949,6549029-6549185,6549867-6549959,6550074-6550230,6550318-6550360,6550478-6550681,6550769-6551549	AT1G18950.1 CDS  gene_syn F14D16.10, F14D16_10  go_process biological_process|GO:0008150||ND  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  product aminoacyl-tRNA synthetase family  note aminoacyl-tRNA synthetase family; FUNCTIONS IN: aminoacyl-tRNA ligase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25580.1); Has 20587 Blast hits to 12449 proteins in 605 species: Archae - 33; Bacteria - 1436; Metazoa - 9619; Fungi - 2230; Plants - 832; Viruses - 219; Other Eukaryotes - 6218 (source: NCBI BLink).  protein_id AT1G18950.1p  transcript_id AT1G18950.1  protein_id AT1G18950.1p  transcript_id AT1G18950.1  
At1g18960	chr1:006552854	0.0	W/6552854-6552971,6553055-6553178,6553259-6553940	AT1G18960.1 CDS  gene_syn F14D16.11, F14D16_11  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: TDF1 (DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1); DNA binding / transcription factor (TAIR:AT3G28470.1); Has 3681 Blast hits to 3675 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 253; Fungi - 36; Plants - 3066; Viruses - 3; Other Eukaryotes - 323 (source: NCBI BLink).  protein_id AT1G18960.1p  transcript_id AT1G18960.1  protein_id AT1G18960.1p  transcript_id AT1G18960.1  
At1g18970	chr1:006554702	0.0	C/6554702-6555364	AT1G18970.1 CDS  gene_syn F14D16.12, F14D16_12, GERMIN-LIKE PROTEIN 4, GLP4  gene GLP4  function Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  product GLP4 (GERMIN-LIKE PROTEIN 4); manganese ion binding / nutrient reservoir  note GERMIN-LIKE PROTEIN 4 (GLP4); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: germin-like protein, putative (TAIR:AT1G18980.1); Has 930 Blast hits to 925 proteins in 104 species: Archae - 0; Bacteria - 47; Metazoa - 0; Fungi - 26; Plants - 846; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G18970.1p  transcript_id AT1G18970.1  protein_id AT1G18970.1p  transcript_id AT1G18970.1  
At1g18980	chr1:006557364	0.0	C/6557364-6558026	AT1G18980.1 CDS  gene_syn F14D16.13, F14D16_13  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_function manganese ion binding|GO:0030145||IEA  go_function nutrient reservoir activity|GO:0045735||IEA  go_process biological_process|GO:0008150||ND  product germin-like protein, putative  note germin-like protein, putative; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: GLP4 (GERMIN-LIKE PROTEIN 4); manganese ion binding / nutrient reservoir (TAIR:AT1G18970.1); Has 892 Blast hits to 887 proteins in 90 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 22; Plants - 817; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G18980.1p  transcript_id AT1G18980.1  protein_id AT1G18980.1p  transcript_id AT1G18980.1  
At1g18990	chr1:006558778	0.0	C/6558778-6558977,6559058-6560432	AT1G18990.1 CDS  gene_syn F14D16.14, F14D16_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74830.1); Has 1057 Blast hits to 929 proteins in 168 species: Archae - 2; Bacteria - 62; Metazoa - 394; Fungi - 83; Plants - 235; Viruses - 15; Other Eukaryotes - 266 (source: NCBI BLink).  protein_id AT1G18990.1p  transcript_id AT1G18990.1  protein_id AT1G18990.1p  transcript_id AT1G18990.1  
At1g19000	chr1:006561335	0.0	C/6561335-6561682,6561983-6562191,6562384-6562684	AT1G19000.1 CDS  gene_syn F14D16.15, F14D16_15  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G74840.1); Has 577 Blast hits to 576 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 521; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G19000.1p  transcript_id AT1G19000.1  protein_id AT1G19000.1p  transcript_id AT1G19000.1  
At1g19000	chr1:006561335	0.0	C/6561335-6561682,6561983-6562191,6562384-6562684	AT1G19000.2 CDS  gene_syn F14D16.15, F14D16_15  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G74840.1); Has 577 Blast hits to 576 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 521; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G19000.2p  transcript_id AT1G19000.2  protein_id AT1G19000.2p  transcript_id AT1G19000.2  
At1g19010	chr1:006565616	0.0	W/6565616-6565630,6565869-6566045,6566413-6567120,6567295-6567354	AT1G19010.1 CDS  gene_syn F14D16.16, F14D16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74860.1); Has 274 Blast hits to 263 proteins in 74 species: Archae - 0; Bacteria - 12; Metazoa - 135; Fungi - 20; Plants - 41; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).  protein_id AT1G19010.1p  transcript_id AT1G19010.1  protein_id AT1G19010.1p  transcript_id AT1G19010.1  
At1g19010	chr1:006565941	0.0	W/6565941-6566045,6566413-6567120,6567295-6567354	AT1G19010.2 CDS  gene_syn F14D16.16, F14D16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74860.1); Has 188 Blast hits to 181 proteins in 57 species: Archae - 0; Bacteria - 7; Metazoa - 86; Fungi - 14; Plants - 38; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G19010.2p  transcript_id AT1G19010.2  protein_id AT1G19010.2p  transcript_id AT1G19010.2  
At1g19020	chr1:006568142	0.0	W/6568142-6568402	AT1G19020.1 CDS  gene_syn F14D16.17, F14D16_17  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 58 Blast hits to 58 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19020.1p  transcript_id AT1G19020.1  protein_id AT1G19020.1p  transcript_id AT1G19020.1  
At1g19025	chr1:006568920	0.0	W/6568920-6569123,6569198-6569303,6569380-6569600,6569682-6570800	AT1G19025.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA cross-link repair protein-related  note DNA cross-link repair protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: DNA cross-link repair protein-related (TAIR:AT1G27410.1); Has 700 Blast hits to 685 proteins in 202 species: Archae - 16; Bacteria - 123; Metazoa - 235; Fungi - 137; Plants - 93; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G19025.1p  transcript_id AT1G19025.1  protein_id AT1G19025.1p  transcript_id AT1G19025.1  
At1g19030	chr1:006571184	0.0	W/6571184-6572937	AT1G19030.1 mRNA_TE_gene  pseudo  gene_syn F14D16.18, F14D16_18  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g19040	chr1:006576895	0.0	W/6576895-6577413	AT1G19040.1 CDS  gene_syn F14D16.19, F14D16_19  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC006 (Arabidopsis NAC domain containing protein 6); transcription factor (TAIR:AT1G03490.1); Has 385 Blast hits to 383 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 385; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19040.1p  transcript_id AT1G19040.1  protein_id AT1G19040.1p  transcript_id AT1G19040.1  
At1g19050	chr1:006577919	0.0	C/6577919-6578165,6578263-6578333,6578427-6578504,6578724-6578800,6578931-6579078	AT1G19050.1 CDS  gene_syn ARR7, F14D16.20, F14D16_20, RESPONSE REGULATOR 7  gene ARR7  function Encodes a member of the Arabidopsis response regulator (ARR) family, most closely related to ARR15. A two-component response regulator protein containing a phosphate accepting domain in the receiver domain but lacking a DNA binding domain in the output domain. Involved in response to cytokinin and meristem stem cell maintenance. Arr7 protein is stabilized by cytokinin.  go_component nucleus|GO:0005634|18642946|IDA  go_process two-component signal transduction system (phosphorelay)|GO:0000160|9482949|TAS  go_process response to cytokinin stimulus|GO:0009735|16407152|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process cytokinin mediated signaling|GO:0009736|18065689|IMP  go_process response to chitin|GO:0010200|17722694|IEP  go_process stem cell maintenance|GO:0019827|16372013|IMP  go_function two-component response regulator activity|GO:0000156|11574878|ISS  go_function two-component response regulator activity|GO:0000156|12068096|ISS  go_function two-component response regulator activity|GO:0000156|9482949|ISS  go_function two-component response regulator activity|GO:0000156||ISS  go_function transcription regulator activity|GO:0030528|12068096|TAS  product ARR7 (RESPONSE REGULATOR 7); transcription regulator/ two-component response regulator  note RESPONSE REGULATOR 7 (ARR7); FUNCTIONS IN: transcription regulator activity, two-component response regulator activity; INVOLVED IN: cytokinin mediated signaling, stem cell maintenance, response to chitin, response to cytokinin stimulus, two-component signal transduction system (phosphorelay); LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: ARR15 (RESPONSE REGULATOR 15); transcription regulator/ two-component response regulator (TAIR:AT1G74890.1); Has 33512 Blast hits to 33099 proteins in 1553 species: Archae - 202; Bacteria - 28179; Metazoa - 12; Fungi - 430; Plants - 726; Viruses - 6; Other Eukaryotes - 3957 (source: NCBI BLink).  protein_id AT1G19050.1p  transcript_id AT1G19050.1  protein_id AT1G19050.1p  transcript_id AT1G19050.1  
At1g19060	chr1:006582066	0.0	C/6582066-6582434,6582563-6582652,6582730-6582839,6582926-6582989,6583228-6583374,6583518-6583601	AT1G19060.1 CDS  gene_syn F14D16.21, F14D16_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02770.1); Has 70 Blast hits to 69 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19060.1p  transcript_id AT1G19060.1  protein_id AT1G19060.1p  transcript_id AT1G19060.1  
At1g19070	chr1:006584454	0.0	W/6584454-6584705	AT1G19070.1 CDS  gene_syn F14D16.22, F14D16_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22280.2); Has 938 Blast hits to 921 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 938; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19070.1p  transcript_id AT1G19070.1  protein_id AT1G19070.1p  transcript_id AT1G19070.1  
At1g19080	chr1:006585087	0.0	W/6585087-6585131,6585214-6585282,6585373-6585473,6585673-6585765,6585952-6586091,6586199-6586308	AT1G19080.1 CDS  gene_syn F14D16.33, PSF3, Partner of SLD5 3, TITAN 10, TTN10  gene TTN10  function This gene is predicted to encode a PSF3 component of the GINS complex. This complex has been implicated in the initiation of DNA replication in Xenopus. Mutations in this gene cause defects in embryo development.  go_component GINS complex|GO:0000811|17556508|ISS  go_process DNA-dependent DNA replication|GO:0006261|17556508|ISS  go_process embryonic development ending in seed dormancy|GO:0009793|15266054|IMP  go_function molecular_function|GO:0003674||ND  product TTN10 (TITAN 10)  note TITAN 10 (TTN10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, DNA-dependent DNA replication; LOCATED IN: GINS complex; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: GINS complex, Psf3 component (InterPro:IPR010492); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55490.1); Has 224 Blast hits to 224 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 76; Plants - 22; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G19080.1p  transcript_id AT1G19080.1  protein_id AT1G19080.1p  transcript_id AT1G19080.1  
At1g19086	chr1:006588542	0.0	W/6588542-6588575,6588652-6588819,6588919-6589004,6589083-6589256	AT1G19086.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19086.1p  transcript_id AT1G19086.1  protein_id AT1G19086.1p  transcript_id AT1G19086.1  
At1g19090	chr1:006590350	0.0	W/6590350-6591094,6591177-6591323,6591409-6591504,6591549-6591728,6591804-6592038,6592121-6592265,6592361-6592615	AT1G19090.1 CDS  gene_syn F14D16.24, F14D16_24, RKF2, receptor-like serine/threonine kinase 2  gene RKF2  function receptor-like serine/threonine kinase (RKF2)  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|9687063|ISS  go_function kinase activity|GO:0016301||ISS  product RKF2 (receptor-like serine/threonine kinase 2); kinase/ receptor signaling protein serine/threonine kinase  note receptor-like serine/threonine kinase 2 (RKF2); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Serine/threonine protein kinase (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G40380.1); Has 80640 Blast hits to 79689 proteins in 2697 species: Archae - 53; Bacteria - 7500; Metazoa - 35044; Fungi - 6038; Plants - 17903; Viruses - 422; Other Eukaryotes - 13680 (source: NCBI BLink).  protein_id AT1G19090.1p  transcript_id AT1G19090.1  protein_id AT1G19090.1p  transcript_id AT1G19090.1  
At1g19100	chr1:006595560	0.0	W/6595560-6595878,6596043-6596117,6596199-6596233,6596566-6596644,6596748-6596837,6596998-6597073,6597184-6597262,6597340-6597468,6597915-6598013,6598110-6598196,6598464-6598610,6598707-6598799,6599093-6599144,6599259-6599370,6599621-6599790,6600164-6600273,6600528-6600607,6600694-6600736,6601043-6601159	AT1G19100.1 CDS  gene_syn F14D16.25, F14D16_25  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_function ATP binding|GO:0005524||IEA  go_process biological_process|GO:0008150||ND  product ATP-binding region, ATPase-like domain-containing protein-related  note ATP-binding region, ATPase-like domain-containing protein-related; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATP-binding region, ATPase-like (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: ATP-binding region, ATPase-like domain-containing protein (TAIR:AT4G36290.1); Has 323 Blast hits to 319 proteins in 62 species: Archae - 0; Bacteria - 20; Metazoa - 166; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G19100.1p  transcript_id AT1G19100.1  protein_id AT1G19100.1p  transcript_id AT1G19100.1  
At1g19110	chr1:006602270	0.0	W/6602270-6602665,6602832-6602984,6603071-6603283,6603376-6603465,6603580-6603696,6603777-6604046,6604146-6604302,6604389-6604466,6604559-6604659,6604764-6604934,6605039-6605113,6605188-6605295,6605431-6605766	AT1G19110.1 CDS  gene_syn F14D16.26, F14D16_26  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product inter-alpha-trypsin inhibitor heavy chain-related  note inter-alpha-trypsin inhibitor heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: inter-alpha-trypsin inhibitor heavy chain-related (TAIR:AT1G72500.1); Has 1260 Blast hits to 1251 proteins in 217 species: Archae - 8; Bacteria - 393; Metazoa - 471; Fungi - 34; Plants - 117; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).  protein_id AT1G19110.1p  transcript_id AT1G19110.1  protein_id AT1G19110.1p  transcript_id AT1G19110.1  
At1g19115	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607183,6607303-6607313	AT1G19115.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 28 Blast hits to 28 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19115.1p  transcript_id AT1G19115.1  protein_id AT1G19115.1p  transcript_id AT1G19115.1  
At1g19115	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607183,6607657-6607667	AT1G19115.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 28 Blast hits to 28 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19115.2p  transcript_id AT1G19115.2  protein_id AT1G19115.2p  transcript_id AT1G19115.2  
At1g19115	chr1:006606351	0.0	W/6606351-6606356,6606444-6606504,6606612-6606913,6607039-6607197	AT1G19115.3 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 28 Blast hits to 28 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19115.3p  transcript_id AT1G19115.3  protein_id AT1G19115.3p  transcript_id AT1G19115.3  
At1g19120	chr1:006608288	0.0	W/6608288-6608348,6608497-6608565,6608653-6608768,6608872-6608934,6609085-6609162	AT1G19120.1 CDS  gene_syn F14D16.28, F14D16_28  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT3G14080.2); Has 797 Blast hits to 796 proteins in 157 species: Archae - 44; Bacteria - 0; Metazoa - 331; Fungi - 216; Plants - 115; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G19120.1p  transcript_id AT1G19120.1  protein_id AT1G19120.1p  transcript_id AT1G19120.1  
At1g19130	chr1:006609545	0.0	C/6609545-6609865,6609973-6610094,6610420-6610555	AT1G19130.1 CDS  gene_syn F14D16.29, F14D16_29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 778 Blast hits to 778 proteins in 280 species: Archae - 8; Bacteria - 513; Metazoa - 2; Fungi - 16; Plants - 22; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).  protein_id AT1G19130.1p  transcript_id AT1G19130.1  protein_id AT1G19130.1p  transcript_id AT1G19130.1  
At1g19140	chr1:006611026	0.0	C/6611026-6611136,6611238-6611311,6611398-6611569,6611650-6611811,6611920-6612027,6612106-6612414	AT1G19140.1 CDS  gene_syn F14D16.30, F14D16_30  go_process ubiquinone biosynthetic process|GO:0006744||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 607 Blast hits to 607 proteins in 177 species: Archae - 0; Bacteria - 151; Metazoa - 114; Fungi - 62; Plants - 22; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).  protein_id AT1G19140.1p  transcript_id AT1G19140.1  protein_id AT1G19140.1p  transcript_id AT1G19140.1  
At1g19140	chr1:006611026	0.0	C/6611026-6611136,6611238-6611314,6611398-6611569,6611650-6611811,6611920-6612027,6612106-6612414	AT1G19140.2 CDS  gene_syn F14D16.30, F14D16_30  go_process ubiquinone biosynthetic process|GO:0006744||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 598 Blast hits to 598 proteins in 175 species: Archae - 0; Bacteria - 149; Metazoa - 114; Fungi - 60; Plants - 22; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).  protein_id AT1G19140.2p  transcript_id AT1G19140.2  protein_id AT1G19140.2p  transcript_id AT1G19140.2  
At1g19150	chr1:006612806	0.0	W/6612806-6613085,6613169-6613683,6613782-6613799	AT1G19150.1 CDS  gene_syn LHCA2*1, LHCA6, PSI TYPE II CHLOROPHYLL A/B-BINDING PROTEIN, T29M8.2, T29M8_2  gene LHCA6  function PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA,  go_component chloroplast|GO:0009507|18431481|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168||ISS  product LHCA6; chlorophyll binding  note LHCA6; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: LHCA2; chlorophyll binding (TAIR:AT3G61470.1); Has 1771 Blast hits to 1677 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1521; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT1G19150.1p  transcript_id AT1G19150.1  protein_id AT1G19150.1p  transcript_id AT1G19150.1  
At1g19160	chr1:006614162	0.0	C/6614162-6615214	AT1G19160.1 CDS  gene_syn T29M8.3, T29M8_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G52610.1); Has 1084 Blast hits to 1065 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1084; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19160.1p  transcript_id AT1G19160.1  protein_id AT1G19160.1p  transcript_id AT1G19160.1  
At1g19170	chr1:006616777	0.0	W/6616777-6617247,6617562-6617682,6617762-6618010,6618100-6618253,6618350-6618875	AT1G19170.1 CDS  gene_syn T29M8.4, T29M8_4  go_component mitochondrion|GO:0005739||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein  note glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT3G42950.1); Has 2514 Blast hits to 2510 proteins in 316 species: Archae - 2; Bacteria - 602; Metazoa - 8; Fungi - 955; Plants - 840; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G19170.1p  transcript_id AT1G19170.1  protein_id AT1G19170.1p  transcript_id AT1G19170.1  
At1g19180	chr1:006622312	0.0	W/6622312-6622474,6622673-6623271	AT1G19180.1 CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 1, JAZ1, T29M8.5, T29M8_5, TIFY10A  gene JAZ1  function JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.  go_component nucleus|GO:0005634|17637677|IDA  go_process pollen development|GO:0009555|17637677|IMP  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_process jasmonic acid mediated signaling pathway|GO:0009867|17637677|IMP  go_process flower development|GO:0009908|17637677|IMP  go_process defense response to bacterium|GO:0042742|18547396|IMP  go_function protein binding|GO:0005515|17637677|IPI  product JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding  note JASMONATE-ZIM-DOMAIN PROTEIN 1 (JAZ1); FUNCTIONS IN: protein binding; INVOLVED IN: flower development, response to jasmonic acid stimulus, defense response to bacterium, jasmonic acid mediated signaling pathway, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: TIFY10B (TAIR:AT1G74950.1); Has 255 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 255; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19180.1p  transcript_id AT1G19180.1  protein_id AT1G19180.1p  transcript_id AT1G19180.1  
At1g19180	chr1:006622708	0.0	W/6622708-6623271	AT1G19180.2 CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 1, JAZ1, T29M8.5, T29M8_5, TIFY10A  gene JAZ1  function JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.  go_component nucleus|GO:0005634|17637677|IDA  go_process pollen development|GO:0009555|17637677|IMP  go_process response to jasmonic acid stimulus|GO:0009753|17637677|IEP  go_process jasmonic acid mediated signaling pathway|GO:0009867|17637677|IMP  go_process flower development|GO:0009908|17637677|IMP  go_process defense response to bacterium|GO:0042742|18547396|IMP  go_function protein binding|GO:0005515|17637677|IPI  product JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding  note TIFY10A; FUNCTIONS IN: protein binding; INVOLVED IN: flower development, response to jasmonic acid stimulus, defense response to bacterium, jasmonic acid mediated signaling pathway, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: TIFY10B (TAIR:AT1G74950.1); Has 261 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19180.2p  transcript_id AT1G19180.2  protein_id AT1G19180.2p  transcript_id AT1G19180.2  
At1g19190	chr1:006623876	0.0	W/6623876-6624832	AT1G19190.1 CDS  gene_syn T29M8.6, T29M8_6  go_process metabolic process|GO:0008152||IEA  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  product hydrolase  note hydrolase; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: hydrolase (TAIR:AT2G03550.1); Has 5587 Blast hits to 5577 proteins in 861 species: Archae - 47; Bacteria - 2876; Metazoa - 576; Fungi - 522; Plants - 655; Viruses - 3; Other Eukaryotes - 908 (source: NCBI BLink).  protein_id AT1G19190.1p  transcript_id AT1G19190.1  protein_id AT1G19190.1p  transcript_id AT1G19190.1  
At1g19200	chr1:006625104	0.0	C/6625104-6625242,6625348-6625856	AT1G19200.1 CDS  gene_syn T29M8.7, T29M8_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G74940.1); Has 252 Blast hits to 252 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19200.1p  transcript_id AT1G19200.1  protein_id AT1G19200.1p  transcript_id AT1G19200.1  
At1g19210	chr1:006626973	0.0	C/6626973-6627530	AT1G19210.1 CDS  gene_syn T29M8.8, T29M8_8  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ORA47; DNA binding / transcription factor (TAIR:AT1G74930.1); Has 3671 Blast hits to 3604 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3665; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G19210.1p  transcript_id AT1G19210.1  protein_id AT1G19210.1p  transcript_id AT1G19210.1  
At1g19220	chr1:006628395	0.0	C/6628395-6628578,6628663-6628853,6628945-6630689,6630772-6630910,6630988-6631348,6631425-6631515,6631603-6631687,6631779-6631934,6632019-6632075,6632153-6632248,6632328-6632440,6632737-6632779	AT1G19220.1 CDS  gene_syn ARF11, ARF19, AUXIN RESPONSE FACTOR 19, AUXIN RESPONSE FACTOR11, IAA-REGULATED 22, IAA22, T29M8.9, T29M8_9  gene ARF19  function Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and , together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.  go_component nucleus|GO:0005634|17259263|IDA  go_process response to ethylene stimulus|GO:0009723|16461383|IMP  go_process response to auxin stimulus|GO:0009733|15659631|IMP  go_process response to auxin stimulus|GO:0009733|17259263|IMP  go_process response to auxin stimulus|GO:0009733||NAS  go_process lateral root primordium development|GO:0010386|17259263|IGI  go_process leaf development|GO:0048366|15960621|IGI  go_process lateral root development|GO:0048527|15960621|IGI  go_function DNA binding|GO:0003677|17259263|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor  note AUXIN RESPONSE FACTOR 19 (ARF19); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to ethylene stimulus, response to auxin stimulus, lateral root primordium development, leaf development, lateral root development; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator (TAIR:AT5G20730.2); Has 57033 Blast hits to 27996 proteins in 936 species: Archae - 12; Bacteria - 2168; Metazoa - 20338; Fungi - 5636; Plants - 4610; Viruses - 204; Other Eukaryotes - 24065 (source: NCBI BLink).  protein_id AT1G19220.1p  transcript_id AT1G19220.1  protein_id AT1G19220.1p  transcript_id AT1G19220.1  
At1g19230	chr1:006644189	0.0	W/6644189-6644864,6644937-6645096,6646070-6646118,6646201-6646314,6646392-6646476,6646555-6646817,6646913-6647296,6647389-6647484,6647575-6647690,6647772-6647945,6648028-6648181,6648267-6648458,6648551-6648679,6648761-6648839,6649040-6649149	AT1G19230.1 CDS  gene_syn T29M8.10, T29M8_10  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function iron ion binding|GO:0005506||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor|GO:0050664||IEA  go_process defense response|GO:0006952|9628030|TAS  product respiratory burst oxidase protein E (RbohE) / NADPH oxidase  note respiratory burst oxidase protein E (RbohE) / NADPH oxidase; FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-HAND 1 (InterPro:IPR018247), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase (TAIR:AT1G64060.1); Has 1639 Blast hits to 1528 proteins in 273 species: Archae - 4; Bacteria - 228; Metazoa - 607; Fungi - 399; Plants - 264; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G19230.1p  transcript_id AT1G19230.1  protein_id AT1G19230.1p  transcript_id AT1G19230.1  
At1g19240	chr1:006649562	0.0	C/6649562-6649694,6650203-6650384	AT1G19240.1 CDS  gene_syn T29M8.11, T29M8_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19240.1p  transcript_id AT1G19240.1  protein_id AT1G19240.1p  transcript_id AT1G19240.1  
At1g19250	chr1:006650656	0.0	C/6650656-6651022,6651227-6651576,6651663-6651841,6652141-6652381,6652598-6653053	AT1G19250.1 CDS  gene_syn FLAVIN-DEPENDENT MONOOXYGENASE 1, FMO1, T29M8.12, T29M8_12  gene FMO1  function FMO1 is required for full expression of TIR-NB-LRR conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.  go_component endomembrane system|GO:0012505||IEA  go_component intrinsic to endoplasmic reticulum membrane|GO:0031227||IEA  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_process plant-type hypersensitive response|GO:0009626|16531493|IMP  go_process systemic acquired resistance|GO:0009627|17419843|IEP  go_process defense response signaling pathway, resistance gene-dependent|GO:0009870|16531493|IMP  go_process defense response signaling pathway, resistance gene-independent|GO:0010204|16856982|IMP  go_process defense response to bacterium|GO:0042742|16856982|IMP  go_process defense response to fungus|GO:0050832|16856982|IMP  go_process response to other organism|GO:0051707|16531493|IEP  go_function monooxygenase activity|GO:0004497||ISS  product FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1); FAD binding / NADP or NADPH binding / electron carrier/ flavin-containing monooxygenase/ monooxygenase/ oxidoreductase  note FLAVIN-DEPENDENT MONOOXYGENASE 1 (FMO1); FUNCTIONS IN: in 6 functions; INVOLVED IN: in 7 processes; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: stem, leaf whorl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Dimethylaniline monooxygenase, N-oxide-forming (InterPro:IPR012143), Flavin-containing amine oxidase (InterPro:IPR001613); BEST Arabidopsis thaliana protein match is: flavin-containing monooxygenase family protein / FMO family protein (TAIR:AT5G45180.1); Has 5245 Blast hits to 5138 proteins in 545 species: Archae - 0; Bacteria - 2026; Metazoa - 645; Fungi - 815; Plants - 447; Viruses - 0; Other Eukaryotes - 1312 (source: NCBI BLink).  protein_id AT1G19250.1p  transcript_id AT1G19250.1  protein_id AT1G19250.1p  transcript_id AT1G19250.1  
At1g19260	chr1:006657260	0.0	C/6657260-6659569	AT1G19260.1 CDS  gene_syn T29M8.13, T29M8_13  go_function protein dimerization activity|GO:0046983||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product hAT dimerisation domain-containing protein  note hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09660.1); Has 497 Blast hits to 459 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 317; Fungi - 1; Plants - 171; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G19260.1p  transcript_id AT1G19260.1  protein_id AT1G19260.1p  transcript_id AT1G19260.1  
At1g19270	chr1:006663327	0.0	W/6663327-6663512,6663622-6663715,6663823-6664051,6664151-6664271,6664370-6664453,6664583-6664702,6664805-6665017,6665118-6665296,6665379-6665437,6665532-6665845	AT1G19270.1 CDS  gene_syn DA 1, DA1, T29M8.14, T29M8_14  gene DA1  go_process negative regulation of organ growth|GO:0046621|18483219|IMP  go_process seed morphogenesis|GO:0048317|18483219|IMP  go_process ovule morphogenesis|GO:0048482|18483219|IMP  go_function ubiquitin binding|GO:0043130|18483219|IPI  product DA1 (DA 1); ubiquitin binding  note DA 1 (DA1); FUNCTIONS IN: ubiquitin binding; INVOLVED IN: seed morphogenesis, ovule morphogenesis, negative regulation of organ growth; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G36860.1); Has 3015 Blast hits to 2198 proteins in 128 species: Archae - 0; Bacteria - 16; Metazoa - 2644; Fungi - 45; Plants - 90; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).  protein_id AT1G19270.1p  transcript_id AT1G19270.1  protein_id AT1G19270.1p  transcript_id AT1G19270.1  
At1g19290	chr1:006666249	0.0	W/6666249-6668963	AT1G19290.1 CDS  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G55840.1); Has 31003 Blast hits to 6161 proteins in 194 species: Archae - 6; Bacteria - 22; Metazoa - 935; Fungi - 736; Plants - 27904; Viruses - 0; Other Eukaryotes - 1400 (source: NCBI BLink).  protein_id AT1G19290.1p  transcript_id AT1G19290.1  protein_id AT1G19290.1p  transcript_id AT1G19290.1  
At1g19300	chr1:006671451	0.0	C/6671451-6672506	AT1G19300.1 CDS  gene_syn F18O14.2, F18O14_2, GALACTURONOSYLTRANSFERASE-LIKE 1, GAOLAOZHUANGREN 1, GATL1, GLZ1, PARVUS  gene PARVUS  function The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.  go_component endoplasmic reticulum|GO:0005783|17991630|IDA  go_process xylem and phloem pattern formation|GO:0010051|17944810|IMP  go_process glucuronoxylan biosynthetic process|GO:0010417|17944810|IMP  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_process multicellular organism reproduction|GO:0032504|17944810|IMP  go_process leaf development|GO:0048366|17944810|IMP  go_process cell wall thickening|GO:0052386|17991630|IMP  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product PARVUS (PARVUS); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note PARVUS (PARVUS); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: GATL2 (Galacturonosyltransferase-like 2); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT3G50760.1); Has 992 Blast hits to 984 proteins in 221 species: Archae - 0; Bacteria - 408; Metazoa - 127; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).  protein_id AT1G19300.1p  transcript_id AT1G19300.1  protein_id AT1G19300.1p  transcript_id AT1G19300.1  
At1g19310	chr1:006676424	0.0	C/6676424-6677104	AT1G19310.1 CDS  gene_syn F18O14.3, F18O14_3  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G23780.1); Has 3650 Blast hits to 3643 proteins in 226 species: Archae - 0; Bacteria - 2; Metazoa - 2420; Fungi - 377; Plants - 427; Viruses - 21; Other Eukaryotes - 403 (source: NCBI BLink).  protein_id AT1G19310.1p  transcript_id AT1G19310.1  protein_id AT1G19310.1p  transcript_id AT1G19310.1  
At1g19320	chr1:006679327	0.0	W/6679327-6679381,6679490-6680178	AT1G19320.1 CDS  gene_syn F18O14.4, F18O14_4  go_component endomembrane system|GO:0012505||IEA  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75050.1); Has 1059 Blast hits to 1044 proteins in 146 species: Archae - 0; Bacteria - 27; Metazoa - 45; Fungi - 43; Plants - 929; Viruses - 5; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G19320.1p  transcript_id AT1G19320.1  protein_id AT1G19320.1p  transcript_id AT1G19320.1  
At1g19330	chr1:006680824	0.0	C/6680824-6680940,6681040-6681108,6681206-6681268,6681361-6681500,6681683-6681809,6683078-6683290	AT1G19330.2 CDS  gene_syn F18O14.5, F18O14_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 85 Blast hits to 85 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19330.2p  transcript_id AT1G19330.2  protein_id AT1G19330.2p  transcript_id AT1G19330.2  
At1g19330	chr1:006680824	0.0	C/6680824-6680940,6681040-6681108,6681206-6681268,6681361-6681515,6681683-6681809,6683078-6683290	AT1G19330.1 CDS  gene_syn F18O14.5, F18O14_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 85 Blast hits to 85 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19330.1p  transcript_id AT1G19330.1  protein_id AT1G19330.1p  transcript_id AT1G19330.1  
At1g19340	chr1:006684798	0.0	W/6684798-6685293,6685372-6685502,6685618-6685651,6685810-6685885,6685974-6686151,6686245-6686334,6686420-6686519,6686659-6686798	AT1G19340.1 CDS  gene_syn F18O14.6, F18O14_6  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_process methylation|GO:0032259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757||ISS  product methyltransferase MT-A70 family protein  note methyltransferase MT-A70 family protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: N-6 adenine-specific DNA methylase, conserved site (InterPro:IPR002052), MT-A70 (InterPro:IPR007757); Has 423 Blast hits to 423 proteins in 157 species: Archae - 4; Bacteria - 134; Metazoa - 77; Fungi - 56; Plants - 33; Viruses - 2; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G19340.1p  transcript_id AT1G19340.1  protein_id AT1G19340.1p  transcript_id AT1G19340.1  
At1g19350	chr1:006688680	0.0	W/6688680-6688738,6688834-6689104,6689422-6690165	AT1G19350.3 CDS  gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7  gene BES1  function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes  go_component nucleus|GO:0005634|12427989|IDA  go_component cytosol|GO:0005829|17681130|IDA  go_process brassinosteroid mediated signaling|GO:0009742|12007405|IGI  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|12427989|IPI  go_function protein binding|GO:0005515|15680330|IPI  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator  note BRI1-EMS-SUPPRESSOR 1 (BES1); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 2461 Blast hits to 379 proteins in 69 species: Archae - 0; Bacteria - 14; Metazoa - 129; Fungi - 69; Plants - 172; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink).  protein_id AT1G19350.3p  transcript_id AT1G19350.3  protein_id AT1G19350.3p  transcript_id AT1G19350.3  
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.1 CDS  gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7  gene BES1  function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes  go_component nucleus|GO:0005634|12427989|IDA  go_component cytosol|GO:0005829|17681130|IDA  go_process brassinosteroid mediated signaling|GO:0009742|12007405|IGI  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|12427989|IPI  go_function protein binding|GO:0005515|15680330|IPI  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator  note BRI1-EMS-SUPPRESSOR 1 (BES1); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 2803 Blast hits to 366 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 127; Fungi - 62; Plants - 169; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).  protein_id AT1G19350.1p  transcript_id AT1G19350.1  protein_id AT1G19350.1p  transcript_id AT1G19350.1  
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.4 CDS  gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7  gene BES1  function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes  go_component nucleus|GO:0005634|12427989|IDA  go_component cytosol|GO:0005829|17681130|IDA  go_process brassinosteroid mediated signaling|GO:0009742|12007405|IGI  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|12427989|IPI  go_function protein binding|GO:0005515|15680330|IPI  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator  note BRI1-EMS-SUPPRESSOR 1 (BES1); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 2803 Blast hits to 366 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 127; Fungi - 62; Plants - 169; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).  protein_id AT1G19350.4p  transcript_id AT1G19350.4  protein_id AT1G19350.4p  transcript_id AT1G19350.4  
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.5 CDS  gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7  gene BES1  function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes  go_component nucleus|GO:0005634|12427989|IDA  go_component cytosol|GO:0005829|17681130|IDA  go_process brassinosteroid mediated signaling|GO:0009742|12007405|IGI  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|12427989|IPI  go_function protein binding|GO:0005515|15680330|IPI  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator  note BRI1-EMS-SUPPRESSOR 1 (BES1); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 2803 Blast hits to 366 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 127; Fungi - 62; Plants - 169; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).  protein_id AT1G19350.5p  transcript_id AT1G19350.5  protein_id AT1G19350.5p  transcript_id AT1G19350.5  
At1g19350	chr1:006688841	0.0	W/6688841-6689104,6689422-6690165	AT1G19350.6 CDS  gene_syn 107 PROTEIN, BES1, BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, BZR2, F18O14.7, F18O14_7  gene BES1  function Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes  go_component nucleus|GO:0005634|12427989|IDA  go_component cytosol|GO:0005829|17681130|IDA  go_process brassinosteroid mediated signaling|GO:0009742|12007405|IGI  go_function transcription factor activity|GO:0003700|15680330|IDA  go_function protein binding|GO:0005515|12427989|IPI  go_function protein binding|GO:0005515|15680330|IPI  go_function transcription regulator activity|GO:0030528|11970900|TAS  product BES1 (BRI1-EMS-SUPPRESSOR 1); protein binding / transcription factor/ transcription regulator  note BRI1-EMS-SUPPRESSOR 1 (BES1); FUNCTIONS IN: protein binding, transcription factor activity, transcription regulator activity; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: BZR1, transcriptional repressor (InterPro:IPR008540); BEST Arabidopsis thaliana protein match is: BZR1 (BRASSINAZOLE-RESISTANT 1); DNA binding / transcription regulator/ transcription repressor (TAIR:AT1G75080.2); Has 2803 Blast hits to 366 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 127; Fungi - 62; Plants - 169; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).  protein_id AT1G19350.6p  transcript_id AT1G19350.6  protein_id AT1G19350.6p  transcript_id AT1G19350.6  
At1g19360	chr1:006690672	0.0	C/6690672-6691787,6692041-6692211	AT1G19360.1 CDS  gene_syn F18O14.8, F18O14_8  go_component endoplasmic reticulum|GO:0005783||IEA  product unknown protein  note LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RRA2 (REDUCED RESIDUAL ARABINOSE 2) (TAIR:AT1G75110.1); Has 165 Blast hits to 162 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G19360.1p  transcript_id AT1G19360.1  protein_id AT1G19360.1p  transcript_id AT1G19360.1  
At1g19370	chr1:006692904	0.0	C/6692904-6694721	AT1G19370.1 CDS  gene_syn F18O14.9, F18O14_9  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  product unknown protein  note unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75140.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19370.1p  transcript_id AT1G19370.1  protein_id AT1G19370.1p  transcript_id AT1G19370.1  
At1g19371	chr1:006695420	0.0	C/6695420-6695609	AT1G19371.1 miRNA  gene_syn MICRORNA169H, MIR169H  gene MIR169H  function Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UAGCCAAGGAUGACUUGCCUG  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR169H (MICRORNA169H); miRNA  transcript_id AT1G19371.1  
At1g19373	chr1:006697178	0.0	W/6697178-6697253	AT1G19373.1 snoRNA  gene_syn 52195.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G19373.1  
At1g19376	chr1:006697438	0.0	W/6697438-6697524	AT1G19376.1 snoRNA  gene_syn 52195.SNORNA00002  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G19376.1  
At1g19380	chr1:006698129	0.0	W/6698129-6698344,6698435-6698662	AT1G19380.1 CDS  gene_syn F18O14.10, F18O14_10  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1195 (InterPro:IPR010608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65650.1); Has 43 Blast hits to 43 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19380.1p  transcript_id AT1G19380.1  protein_id AT1G19380.1p  transcript_id AT1G19380.1  
At1g19390	chr1:006700772	0.0	C/6700772-6702000,6702102-6702224,6702354-6703368	AT1G19390.1 CDS  gene_syn F18O14.11, F18O14_11  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product wall-associated kinase, putative  note wall-associated kinase, putative; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: wall-associated kinase, putative (TAIR:AT4G31100.1); Has 87425 Blast hits to 85837 proteins in 3112 species: Archae - 54; Bacteria - 7620; Metazoa - 38747; Fungi - 6816; Plants - 19037; Viruses - 452; Other Eukaryotes - 14699 (source: NCBI BLink).  protein_id AT1G19390.1p  transcript_id AT1G19390.1  protein_id AT1G19390.1p  transcript_id AT1G19390.1  
At1g19392	chr1:006708557	0.0	W/6708557-6709175	AT1G19392.1 mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 3.5e-10 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g19394	chr1:006709773	0.0	W/6709773-6709783,6709889-6709958,6710468-6710605	AT1G19394.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19394.1p  transcript_id AT1G19394.1  protein_id AT1G19394.1p  transcript_id AT1G19394.1  
At1g19397	chr1:006711040	0.0	W/6711040-6711336	AT1G19397.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G19397.1p  transcript_id AT1G19397.1  protein_id AT1G19397.1p  transcript_id AT1G19397.1  
At1g19400	chr1:006712222	0.0	C/6712222-6712437,6712981-6713676	AT1G19400.1 CDS  gene_syn F18O14.16, F18O14_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75180.3); Has 70 Blast hits to 70 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19400.1p  transcript_id AT1G19400.1  protein_id AT1G19400.1p  transcript_id AT1G19400.1  
At1g19400	chr1:006712222	0.0	C/6712222-6712437,6712981-6713676	AT1G19400.2 CDS  gene_syn F18O14.16, F18O14_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75180.3); Has 70 Blast hits to 70 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19400.2p  transcript_id AT1G19400.2  protein_id AT1G19400.2p  transcript_id AT1G19400.2  
At1g19410	chr1:006714492	0.0	C/6714492-6714632,6714789-6714920,6715001-6715138,6715228-6715268,6715507-6716249,6716327-6716439	AT1G19410.1 CDS  gene_syn F18O14.17, F18O14_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G62970.1); Has 533 Blast hits to 521 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 533; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19410.1p  transcript_id AT1G19410.1  protein_id AT1G19410.1p  transcript_id AT1G19410.1  
At1g19415	chr1:006719448	0.0	W/6719448-6720654	AT1G19415.1 mRNA_TE_gene  pseudo  gene_syn F18O14.19  note Transposable element gene, copia-like retrotransposon family, has a 6.1e-43 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g19420	chr1:006721435	0.0	W/6721435-6723930	AT1G19420.1 pseudogenic_transcript  pseudo  gene_syn F18O14.39  note pseudogene, CHP-rich zinc finger protein  
At1g19430	chr1:006724669	0.0	C/6724669-6724867,6724955-6725149,6725241-6725483,6725581-6725755,6725923-6726015,6726097-6726367,6726456-6726605,6726685-6727533	AT1G19430.1 CDS  gene_syn F18O14.20, F18O14_20  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT5G64030.1); Has 7615 Blast hits to 5355 proteins in 417 species: Archae - 11; Bacteria - 419; Metazoa - 2915; Fungi - 818; Plants - 766; Viruses - 126; Other Eukaryotes - 2560 (source: NCBI BLink).  protein_id AT1G19430.1p  transcript_id AT1G19430.1  protein_id AT1G19430.1p  transcript_id AT1G19430.1  
At1g19440	chr1:006729119	0.0	W/6729119-6730669	AT1G19440.1 CDS  gene_syn 3-KETOACYL-COA SYNTHASE 4, F18O14.21, F18O14_21, KCS4  gene KCS4  function Encodes KCS4, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function acyltransferase activity|GO:0008415||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10330468|IDA  go_process cuticle development|GO:0042335|10330468|IDA  product KCS4 (3-KETOACYL-COA SYNTHASE 4); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups  note 3-KETOACYL-COA SYNTHASE 4 (KCS4); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: very-long-chain fatty acid metabolic process, cuticle development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone and stilbene synthases, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: KCS9 (3-KETOACYL-COA SYNTHASE 9); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT2G16280.1); Has 2782 Blast hits to 2777 proteins in 653 species: Archae - 0; Bacteria - 742; Metazoa - 0; Fungi - 7; Plants - 1940; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).  protein_id AT1G19440.1p  transcript_id AT1G19440.1  protein_id AT1G19440.1p  transcript_id AT1G19440.1  
At1g19450	chr1:006731671	0.0	C/6731671-6731898,6731981-6732040,6732137-6732202,6732293-6732352,6732447-6732509,6732575-6732621,6732720-6732804,6732887-6732967,6733044-6733136,6733222-6733286,6733395-6733470,6733566-6733631,6733721-6733786,6733875-6733934,6734050-6734139,6734251-6734313,6734436-6734633	AT1G19450.1 CDS  gene_syn F18O14.22, F18O14_22  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product integral membrane protein, putative / sugar transporter family protein  note integral membrane protein, putative / sugar transporter family protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT1G75220.1); Has 20407 Blast hits to 19945 proteins in 1330 species: Archae - 327; Bacteria - 8693; Metazoa - 4646; Fungi - 4186; Plants - 1403; Viruses - 2; Other Eukaryotes - 1150 (source: NCBI BLink).  protein_id AT1G19450.1p  transcript_id AT1G19450.1  protein_id AT1G19450.1p  transcript_id AT1G19450.1  
At1g19460	chr1:006738484	0.0	W/6738484-6739734	AT1G19460.1 CDS  gene_syn F18O14.24, F18O14_24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G19470.1); Has 1036 Blast hits to 1001 proteins in 107 species: Archae - 4; Bacteria - 39; Metazoa - 366; Fungi - 4; Plants - 562; Viruses - 33; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G19460.1p  transcript_id AT1G19460.1  protein_id AT1G19460.1p  transcript_id AT1G19460.1  
At1g19464	chr1:006740500	0.0	W/6740500-6740591	AT1G19464.1 miRNA  gene_syn MICRORNA864A, MIR864A  gene MIR864A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCAGGUAUGAUUGACUUCAAA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR864A (MICRORNA864A); miRNA  transcript_id AT1G19464.1  
At1g19470	chr1:006741296	0.0	W/6741296-6742534	AT1G19470.1 CDS  gene_syn F18O14.42  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G19460.1); Has 1076 Blast hits to 1039 proteins in 105 species: Archae - 0; Bacteria - 43; Metazoa - 402; Fungi - 7; Plants - 565; Viruses - 33; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G19470.1p  transcript_id AT1G19470.1  protein_id AT1G19470.1p  transcript_id AT1G19470.1  
At1g19480	chr1:006744520	0.0	W/6744520-6745649,6746126-6746144	AT1G19480.1 CDS  gene_syn F18O14.25, F18O14_25  go_component chloroplast|GO:0009507||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_process base-excision repair|GO:0006284||ISS  product HhH-GPD base excision DNA repair family protein  note HhH-GPD base excision DNA repair family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT1G75230.1); Has 3475 Blast hits to 3475 proteins in 635 species: Archae - 37; Bacteria - 1340; Metazoa - 0; Fungi - 92; Plants - 45; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink).  protein_id AT1G19480.1p  transcript_id AT1G19480.1  protein_id AT1G19480.1p  transcript_id AT1G19480.1  
At1g19480	chr1:006744520	0.0	W/6744520-6745653	AT1G19480.2 CDS  gene_syn F18O14.25, F18O14_25  go_component chloroplast|GO:0009507||IEA  go_process DNA repair|GO:0006281||IEA  go_process base-excision repair|GO:0006284||IEA  go_function catalytic activity|GO:0003824||IEA  go_process base-excision repair|GO:0006284||ISS  product HhH-GPD base excision DNA repair family protein  note HhH-GPD base excision DNA repair family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT1G75230.2); Has 3475 Blast hits to 3475 proteins in 635 species: Archae - 37; Bacteria - 1340; Metazoa - 0; Fungi - 92; Plants - 45; Viruses - 0; Other Eukaryotes - 1961 (source: NCBI BLink).  protein_id AT1G19480.2p  transcript_id AT1G19480.2  protein_id AT1G19480.2p  transcript_id AT1G19480.2  
At1g19485	chr1:006747167	0.0	W/6747167-6747321,6747481-6747607,6747722-6747765,6748070-6748163,6748248-6749002,6749161-6749292,6749458-6749530,6749674-6749713,6749826-6749898,6749984-6750049,6750192-6750269,6750363-6750535,6750623-6750669,6750759-6750990,6751085-6751443	AT1G19485.1 CDS  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product AT hook motif-containing protein  note AT hook motif-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), AT hook, DNA-binding, conserved site (InterPro:IPR017956), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), HMG-I and HMG-Y, DNA-binding, conserved site (InterPro:IPR000637); Has 249 Blast hits to 232 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 123; Fungi - 45; Plants - 44; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G19485.1p  transcript_id AT1G19485.1  protein_id AT1G19485.1p  transcript_id AT1G19485.1  
At1g19490	chr1:006751953	0.0	C/6751953-6752696,6752782-6752847,6752931-6752996,6753103-6753180,6753271-6753450,6753678-6753959	AT1G19490.1 CDS  gene_syn F18O14.41  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP transcription factor family protein  note bZIP transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); Has 738 Blast hits to 723 proteins in 130 species: Archae - 2; Bacteria - 2; Metazoa - 172; Fungi - 61; Plants - 402; Viruses - 1; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G19490.1p  transcript_id AT1G19490.1  protein_id AT1G19490.1p  transcript_id AT1G19490.1  
At1g19500	chr1:006754952	0.0	C/6754952-6754973,6755316-6755536	AT1G19500.1 CDS  gene_syn F18O14.44  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35765.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19500.1p  transcript_id AT1G19500.1  protein_id AT1G19500.1p  transcript_id AT1G19500.1  
At1g19510	chr1:006756483	0.0	C/6756483-6756510,6757016-6757290	AT1G19510.1 CDS  gene_syn ARABIDOPSIS RAD-LIKE 5, ATRL5, F18O14.26, F18O14_26  gene ATRL5  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product ATRL5 (ARABIDOPSIS RAD-LIKE 5); DNA binding / transcription factor  note ARABIDOPSIS RAD-LIKE 5 (ATRL5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: ATRL6 (ARABIDOPSIS RAD-LIKE 6); transcription factor (TAIR:AT1G75250.2); Has 396 Blast hits to 396 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G19510.1p  transcript_id AT1G19510.1  protein_id AT1G19510.1p  transcript_id AT1G19510.1  
At1g19520	chr1:006760032	0.0	W/6760032-6761138,6761511-6762581	AT1G19520.1 CDS  gene_syn F18O14.40, NFD5, NUCLEAR FUSION DEFECTIVE 5  gene NFD5  product NFD5 (NUCLEAR FUSION DEFECTIVE 5)  note NUCLEAR FUSION DEFECTIVE 5 (NFD5); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G01970.1); Has 13897 Blast hits to 5066 proteins in 165 species: Archae - 3; Bacteria - 30; Metazoa - 232; Fungi - 129; Plants - 13123; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT1G19520.1p  transcript_id AT1G19520.1  protein_id AT1G19520.1p  transcript_id AT1G19520.1  
At1g19530	chr1:006763976	0.0	W/6763976-6764027,6764145-6764254,6764410-6764486,6764572-6764686	AT1G19530.1 CDS  gene_syn F18O14.29, F18O14_29  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, leaf apex, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19530.1p  transcript_id AT1G19530.1  protein_id AT1G19530.1p  transcript_id AT1G19530.1  
At1g19540	chr1:006765713	0.0	W/6765713-6765889,6766212-6766352,6766445-6766688,6766775-6766978,6767081-6767247	AT1G19540.1 CDS  gene_syn F18O14.30, F18O14_30  go_process regulation of nitrogen utilization|GO:0006808||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function transcription repressor activity|GO:0016564||IEA  go_component cellular_component|GO:0005575||ND  product isoflavone reductase, putative  note isoflavone reductase, putative; FUNCTIONS IN: transcription repressor activity, binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: isoflavone reductase, putative (TAIR:AT1G75280.1); Has 1273 Blast hits to 1271 proteins in 317 species: Archae - 2; Bacteria - 478; Metazoa - 4; Fungi - 289; Plants - 363; Viruses - 7; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G19540.1p  transcript_id AT1G19540.1  protein_id AT1G19540.1p  transcript_id AT1G19540.1  
At1g19550	chr1:006767451	0.0	C/6767451-6767710,6767782-6767983	AT1G19550.1 CDS  gene_syn F18O14.31, F18O14_31  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174||ISS  product dehydroascorbate reductase, putative  note dehydroascorbate reductase, putative; FUNCTIONS IN: glutathione dehydrogenase (ascorbate) activity; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: DHAR1 (dehydroascorbate reductase); copper ion binding / glutathione dehydrogenase (ascorbate) (TAIR:AT1G19570.1); Has 318 Blast hits to 318 proteins in 95 species: Archae - 0; Bacteria - 40; Metazoa - 150; Fungi - 2; Plants - 117; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G19550.1p  transcript_id AT1G19550.1  protein_id AT1G19550.1p  transcript_id AT1G19550.1  
At1g19560	chr1:006768814	0.0	C/6768814-6770752	AT1G19560.1 pseudogenic_transcript  pseudo  gene_syn F18O14.32  note pseudogene, putative CHP-rich zinc finger protein  
At1g19570	chr1:006773462	0.0	C/6773462-6773954,6774141-6774231,6774356-6774413	AT1G19570.1 CDS  gene_syn DHAR1, F14P1.9, F14P1_9, dehydroascorbate reductase  gene DHAR1  function Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function copper ion binding|GO:0005507|16526091|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  go_process response to symbiotic fungus|GO:0009610|19386380|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process response to ozone|GO:0010193|16262714|IEP  go_process regulation of symbiosis, encompassing mutualism through parasitism|GO:0043903|19386380|IMP  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174|12077129|IDA  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174||ISS  product DHAR1 (dehydroascorbate reductase); copper ion binding / glutathione dehydrogenase (ascorbate)  note dehydroascorbate reductase (DHAR1); FUNCTIONS IN: copper ion binding, glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: response to jasmonic acid stimulus, response to ozone; LOCATED IN: in 6 components; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: DHAR2 (DEHYDROASCORBATE REDUCTASE 2); glutathione binding / glutathione dehydrogenase (ascorbate) (TAIR:AT1G75270.1); Has 3691 Blast hits to 3660 proteins in 734 species: Archae - 0; Bacteria - 1384; Metazoa - 907; Fungi - 112; Plants - 425; Viruses - 0; Other Eukaryotes - 863 (source: NCBI BLink).  protein_id AT1G19570.1p  transcript_id AT1G19570.1  protein_id AT1G19570.1p  transcript_id AT1G19570.1  
At1g19570	chr1:006773462	0.0	C/6773462-6773954,6774144-6774231,6774356-6774413	AT1G19570.2 CDS  gene_syn DHAR1, F14P1.9, F14P1_9, dehydroascorbate reductase  gene DHAR1  function Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component mitochondrion|GO:0005739|12954611|IDA  go_process response to symbiotic fungus|GO:0009610|19386380|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16262714|IEP  go_process response to ozone|GO:0010193|16262714|IEP  go_process regulation of symbiosis, encompassing mutualism through parasitism|GO:0043903|19386380|IMP  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174|12077129|IDA  go_function glutathione dehydrogenase (ascorbate) activity|GO:0045174||ISS  product DHAR1 (dehydroascorbate reductase); glutathione dehydrogenase (ascorbate)  note dehydroascorbate reductase (DHAR1); FUNCTIONS IN: glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: response to jasmonic acid stimulus, response to ozone; LOCATED IN: mitochondrion, apoplast, chloroplast, plasma membrane; EXPRESSED IN: guard cell, cultured cell, seed, leaf; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: DHAR2 (DEHYDROASCORBATE REDUCTASE 2); glutathione binding / glutathione dehydrogenase (ascorbate) (TAIR:AT1G75270.1); Has 3452 Blast hits to 3450 proteins in 697 species: Archae - 0; Bacteria - 1412; Metazoa - 832; Fungi - 105; Plants - 379; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).  protein_id AT1G19570.2p  transcript_id AT1G19570.2  protein_id AT1G19570.2p  transcript_id AT1G19570.2  
At1g19580	chr1:006774937	0.0	W/6774937-6775051,6775306-6775449,6776015-6776140,6776243-6776394,6776802-6777092	AT1G19580.1 CDS  gene_syn GAMMA CA1, GAMMA CARBONIC ANHYDRASE 1  gene GAMMA CA1  function Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.  go_component mitochondrion|GO:0005739|15821992|IDA  go_component mitochondrial membrane|GO:0031966|16407270|IDA  go_component respiratory chain complex I|GO:0045271|16407270|IDA  go_component respiratory chain complex I|GO:0045271|18189341|IDA  go_process photorespiration|GO:0009853|16407270|TAS  go_function carbonate dehydratase activity|GO:0004089|16407270|ISS  product GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1); carbonate dehydratase  note GAMMA CARBONIC ANHYDRASE 1 (GAMMA CA1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2); carbonate dehydratase (TAIR:AT1G47260.1); Has 6687 Blast hits to 6653 proteins in 1187 species: Archae - 172; Bacteria - 4019; Metazoa - 9; Fungi - 48; Plants - 109; Viruses - 0; Other Eukaryotes - 2330 (source: NCBI BLink).  protein_id AT1G19580.1p  transcript_id AT1G19580.1  protein_id AT1G19580.1p  transcript_id AT1G19580.1  
At1g19600	chr1:006779085	0.0	W/6779085-6779225,6779382-6779630,6779709-6779780,6779869-6779907,6780014-6780121,6780217-6780314,6780419-6780530,6780650-6780898	AT1G19600.1 CDS  gene_syn F14P1.7, F14P1_7  go_process D-ribose catabolic process|GO:0019303||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product pfkB-type carbohydrate kinase family protein  note pfkB-type carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: D-ribose catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-type carbohydrate kinase family protein (TAIR:AT4G27600.1); Has 7782 Blast hits to 7781 proteins in 1176 species: Archae - 156; Bacteria - 3949; Metazoa - 275; Fungi - 74; Plants - 266; Viruses - 0; Other Eukaryotes - 3062 (source: NCBI BLink).  protein_id AT1G19600.1p  transcript_id AT1G19600.1  protein_id AT1G19600.1p  transcript_id AT1G19600.1  
At1g19610	chr1:006781674	0.0	C/6781674-6781846,6781961-6782024	AT1G19610.1 CDS  gene_syn F14P1.6, F14P1_6, LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4  gene PDF1.4  function Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952|18674922|ISS  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product PDF1.4  note PDF1.4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: LCR67 (TAIR:AT1G75830.1); Has 101 Blast hits to 101 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19610.1p  transcript_id AT1G19610.1  protein_id AT1G19610.1p  transcript_id AT1G19610.1  
At1g19620	chr1:006784020	0.0	W/6784020-6784153,6784256-6785075	AT1G19620.1 CDS  gene_syn F14P1.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf lamina base, shoot apex, embryo, petiole, leaf; EXPRESSED DURING: C globular stage, LP.12 twelve leaves visible; Has 19 Blast hits to 7 proteins in 5 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G19620.1p  transcript_id AT1G19620.1  protein_id AT1G19620.1p  transcript_id AT1G19620.1  
At1g19630	chr1:006785427	0.0	C/6785427-6785523,6785610-6785728,6785825-6785931,6786044-6786122,6786205-6786291,6786463-6786542,6786715-6786892,6787001-6787150,6787360-6787681,6787756-6787967	AT1G19630.1 CDS  gene_syn CYP722A1, F14P1.4, F14P1_4  gene CYP722A1  function member of CYP722A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP722A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP722A1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, C-terminal region (InterPro:IPR017973); BEST Arabidopsis thaliana protein match is: CYP707A1; (+)-abscisic acid 8 -hydroxylase/ oxygen binding (TAIR:AT4G19230.1); Has 23969 Blast hits to 23925 proteins in 1317 species: Archae - 32; Bacteria - 3716; Metazoa - 9941; Fungi - 3639; Plants - 4975; Viruses - 3; Other Eukaryotes - 1663 (source: NCBI BLink).  protein_id AT1G19630.1p  transcript_id AT1G19630.1  protein_id AT1G19630.1p  transcript_id AT1G19630.1  
At1g19640	chr1:006789166	0.0	C/6789166-6789546,6790285-6790572,6791068-6791493,6791634-6791708	AT1G19640.1 CDS  gene_syn F14P1.3, F14P1_3, JASMONIC ACID CARBOXYL METHYLTRANSFERASE, JMT  gene JMT  function Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment.  go_component cytoplasm|GO:0005737|11287667|NAS  go_process response to wounding|GO:0009611|11287667|IEP  go_process jasmonic acid metabolic process|GO:0009694|11287667|IDA  go_process jasmonic acid biosynthetic process|GO:0009695|11287667|IDA  go_process jasmonic acid mediated signaling pathway|GO:0009867|11287667|IMP  go_function jasmonate O-methyltransferase activity|GO:0030795|11287667|IDA  go_function jasmonate O-methyltransferase activity|GO:0030795|11287667|IMP  product JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE); jasmonate O-methyltransferase  note JASMONIC ACID CARBOXYL METHYLTRANSFERASE (JMT); FUNCTIONS IN: jasmonate O-methyltransferase activity; INVOLVED IN: jasmonic acid metabolic process, jasmonic acid biosynthetic process, response to wounding, jasmonic acid mediated signaling pathway; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: BSMT1; S-adenosylmethionine-dependent methyltransferase (TAIR:AT3G11480.1); Has 591 Blast hits to 579 proteins in 98 species: Archae - 0; Bacteria - 48; Metazoa - 12; Fungi - 3; Plants - 456; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G19640.1p  transcript_id AT1G19640.1  protein_id AT1G19640.1p  transcript_id AT1G19640.1  
At1g19650	chr1:006796431	0.0	C/6796431-6796451,6796529-6796603,6796700-6797091,6797197-6797311,6797410-6797523,6797617-6797709,6797824-6797923,6798014-6798063,6798144-6798245,6798327-6798404,6798499-6798765,6798854-6798953,6799099-6799384,6799504-6799537	AT1G19650.1 CDS  gene_syn F14P1.2, F14P1_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function phosphatidylinositol transporter activity|GO:0008526||ISS  product SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  note SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative (TAIR:AT1G75370.1); Has 1786 Blast hits to 1782 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 645; Fungi - 360; Plants - 459; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G19650.1p  transcript_id AT1G19650.1  protein_id AT1G19650.1p  transcript_id AT1G19650.1  
At1g19650	chr1:006796431	0.0	C/6796431-6796451,6796529-6796603,6796700-6797091,6797197-6797311,6797410-6797523,6797617-6797709,6797824-6797923,6798014-6798063,6798144-6798245,6798327-6798404,6798499-6798765,6798854-6799057	AT1G19650.2 CDS  gene_syn F14P1.2, F14P1_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function phosphatidylinositol transporter activity|GO:0008526||ISS  product SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative  note SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative; FUNCTIONS IN: phosphatidylinositol transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative (TAIR:AT1G75370.1); Has 1769 Blast hits to 1766 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 629; Fungi - 358; Plants - 463; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G19650.2p  transcript_id AT1G19650.2  protein_id AT1G19650.2p  transcript_id AT1G19650.2  
At1g19660	chr1:006800361	0.0	C/6800361-6800422,6800552-6800643,6800733-6800851,6800989-6801063,6801201-6801266,6801369-6801425,6801523-6801572,6801672-6801842,6801943-6802240	AT1G19660.1 CDS  gene_syn F14P1.1, F14P1_1  go_process response to wounding|GO:0009611||ISS  product wound-responsive family protein  note wound-responsive family protein; INVOLVED IN: response to wounding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729); BEST Arabidopsis thaliana protein match is: wound-responsive protein-related (TAIR:AT1G75380.3); Has 559 Blast hits to 559 proteins in 164 species: Archae - 30; Bacteria - 276; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G19660.1p  transcript_id AT1G19660.1  protein_id AT1G19660.1p  transcript_id AT1G19660.1  
At1g19660	chr1:006800361	0.0	C/6800361-6800422,6800552-6800643,6800733-6800851,6800989-6801063,6801201-6801266,6801369-6801425,6801523-6801572,6801672-6801842,6801943-6802240	AT1G19660.2 CDS  gene_syn F14P1.1, F14P1_1  go_process response to wounding|GO:0009611||ISS  product wound-responsive family protein  note wound-responsive family protein; INVOLVED IN: response to wounding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729); BEST Arabidopsis thaliana protein match is: wound-responsive protein-related (TAIR:AT1G75380.3); Has 559 Blast hits to 559 proteins in 164 species: Archae - 30; Bacteria - 276; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G19660.2p  transcript_id AT1G19660.2  protein_id AT1G19660.2p  transcript_id AT1G19660.2  
At1g19670	chr1:006803796	0.0	C/6803796-6804500,6804654-6804923	AT1G19670.1 CDS  gene_syn ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1, ATCLH1, ATHCOR1, CHLOROPHYLLASE, CORI1, CORONATINE-INDUCED PROTEIN 1, F6F9.28, F6F9_28  gene ATCLH1  function Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.  go_component vacuole|GO:0005773|15539469|IDA  go_process response to stress|GO:0006950|15598807|IMP  go_process response to jasmonic acid stimulus|GO:0009753|10611389|IEP  go_process jasmonic acid mediated signaling pathway|GO:0009867|9501136|IGI  go_process chlorophyll catabolic process|GO:0015996|10611389|IDA  go_function chlorophyllase activity|GO:0047746|10611389|IDA  product ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1); chlorophyllase  note ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1 (ATCLH1); FUNCTIONS IN: chlorophyllase activity; INVOLVED IN: response to jasmonic acid stimulus, chlorophyll catabolic process, jasmonic acid mediated signaling pathway, response to stress; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyllase (InterPro:IPR010821), Chlorophyllase, chloroplast (InterPro:IPR017395); BEST Arabidopsis thaliana protein match is: ATCLH2; chlorophyllase (TAIR:AT5G43860.1); Has 125 Blast hits to 125 proteins in 45 species: Archae - 0; Bacteria - 45; Metazoa - 12; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G19670.1p  transcript_id AT1G19670.1  protein_id AT1G19670.1p  transcript_id AT1G19670.1  
At1g19680	chr1:006805909	0.0	W/6805909-6806239,6806506-6806537,6806619-6807569,6807662-6807682	AT1G19680.1 CDS  gene_syn F14P1.21, F14P1_21  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G75400.1); Has 366 Blast hits to 222 proteins in 62 species: Archae - 0; Bacteria - 44; Metazoa - 75; Fungi - 22; Plants - 84; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).  protein_id AT1G19680.1p  transcript_id AT1G19680.1  protein_id AT1G19680.1p  transcript_id AT1G19680.1  
At1g19690	chr1:006807925	0.0	C/6807925-6808192,6808278-6808415,6808498-6808632,6808702-6808741,6808832-6808910,6808999-6809077,6809158-6809250,6809336-6809562	AT1G19690.1 CDS  gene_syn F14P1.35, F14P1_35  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  product binding / catalytic/ coenzyme binding  note binding / catalytic/ coenzyme binding; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); Has 2514 Blast hits to 2514 proteins in 644 species: Archae - 32; Bacteria - 1377; Metazoa - 4; Fungi - 4; Plants - 44; Viruses - 2; Other Eukaryotes - 1051 (source: NCBI BLink).  protein_id AT1G19690.1p  transcript_id AT1G19690.1  protein_id AT1G19690.1p  transcript_id AT1G19690.1  
At1g19700	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.1 CDS  gene_syn BEL1-LIKE HOMEODOMAIN 10, BEL10, BLH10, F14P1.20, F14P1_20  gene BEL10  function Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BEL10 (BEL1-LIKE HOMEODOMAIN 10); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 10 (BEL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH3 (BEL1-LIKE HOMEODOMAIN 3); DNA binding / transcription factor (TAIR:AT1G75410.2); Has 4218 Blast hits to 4218 proteins in 272 species: Archae - 0; Bacteria - 4; Metazoa - 1804; Fungi - 208; Plants - 2032; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).  protein_id AT1G19700.1p  transcript_id AT1G19700.1  protein_id AT1G19700.1p  transcript_id AT1G19700.1  
At1g19700	chr1:006809958	0.0	C/6809958-6810383,6810471-6810531,6810637-6811022,6811111-6811854	AT1G19700.2 CDS  gene_syn BEL1-LIKE HOMEODOMAIN 10, BEL10, BLH10, F14P1.20, F14P1_20  gene BEL10  function Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product BEL10 (BEL1-LIKE HOMEODOMAIN 10); DNA binding / transcription factor  note BEL1-LIKE HOMEODOMAIN 10 (BEL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BLH3 (BEL1-LIKE HOMEODOMAIN 3); DNA binding / transcription factor (TAIR:AT1G75410.2).  protein_id AT1G19700.2p  transcript_id AT1G19700.2  protein_id AT1G19700.2p  transcript_id AT1G19700.2  
At1g19710	chr1:006814920	0.0	W/6814920-6815187,6815257-6815399,6815484-6815755,6815848-6816002,6816115-6816716	AT1G19710.1 CDS  gene_syn F14P1.19, F14P1_19  go_process biosynthetic process|GO:0009058||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 1 protein  note glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT1G75420.1); Has 4243 Blast hits to 4240 proteins in 780 species: Archae - 115; Bacteria - 2336; Metazoa - 83; Fungi - 27; Plants - 65; Viruses - 0; Other Eukaryotes - 1617 (source: NCBI BLink).  protein_id AT1G19710.1p  transcript_id AT1G19710.1  protein_id AT1G19710.1p  transcript_id AT1G19710.1  
At1g19715	chr1:006816934	0.0	C/6816934-6817233,6817324-6817548,6817795-6818169,6818250-6818483,6818582-6819028,6819110-6819244	AT1G19715.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G73040.1); Has 2230 Blast hits to 629 proteins in 48 species: Archae - 0; Bacteria - 8; Metazoa - 73; Fungi - 0; Plants - 2140; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G19715.2p  transcript_id AT1G19715.2  protein_id AT1G19715.2p  transcript_id AT1G19715.2  
At1g19715	chr1:006816934	0.0	C/6816934-6817233,6817324-6817548,6817795-6818169,6818250-6818483,6818582-6819028,6819110-6819313,6819430-6819432	AT1G19715.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product jacalin lectin family protein  note jacalin lectin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G73040.1); Has 2262 Blast hits to 629 proteins in 48 species: Archae - 0; Bacteria - 8; Metazoa - 74; Fungi - 0; Plants - 2171; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G19715.1p  transcript_id AT1G19715.1  protein_id AT1G19715.1p  transcript_id AT1G19715.1  
At1g19720	chr1:006819926	0.0	C/6819926-6822610	AT1G19720.1 CDS  gene_syn F14P1.33, F14P1_33  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G57430.1); Has 22413 Blast hits to 5958 proteins in 201 species: Archae - 3; Bacteria - 14; Metazoa - 387; Fungi - 330; Plants - 20974; Viruses - 0; Other Eukaryotes - 705 (source: NCBI BLink).  protein_id AT1G19720.1p  transcript_id AT1G19720.1  protein_id AT1G19720.1p  transcript_id AT1G19720.1  
At1g19730	chr1:006823163	0.0	C/6823163-6823306,6823407-6823532,6823931-6824020	AT1G19730.1 CDS  gene_syn ATH4, ATTRX4, F14P1.32, F14P1_32, THIOREDOXIN, thioredoxin H-type 4  gene ATTRX4  function encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.  go_process cell redox homeostasis|GO:0045454||IEA  go_component cytosol|GO:0005829|7777559|TAS  go_function oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor|GO:0016671|7777559|IDA  product ATTRX4; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor  note ATTRX4; FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: ATTRX5; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (TAIR:AT1G45145.1); Has 12842 Blast hits to 12580 proteins in 1712 species: Archae - 177; Bacteria - 5764; Metazoa - 1633; Fungi - 660; Plants - 1123; Viruses - 3; Other Eukaryotes - 3482 (source: NCBI BLink).  protein_id AT1G19730.1p  transcript_id AT1G19730.1  protein_id AT1G19730.1p  transcript_id AT1G19730.1  
At1g19740	chr1:006824396	0.0	W/6824396-6825232	AT1G19740.1 CDS  gene_syn F14P1.10, F14P1_10  go_component chloroplast|GO:0009507|18431481|IDA  go_process ATP-dependent proteolysis|GO:0006510||IEA  go_function ATP-dependent peptidase activity|GO:0004176||IEA  go_function ATP-dependent peptidase activity|GO:0004176||ISS  product ATP-dependent protease La (LON) domain-containing protein  note ATP-dependent protease La (LON) domain-containing protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: ATP-dependent proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain-containing protein (TAIR:AT1G75460.1); Has 2910 Blast hits to 2910 proteins in 574 species: Archae - 0; Bacteria - 1078; Metazoa - 141; Fungi - 27; Plants - 64; Viruses - 0; Other Eukaryotes - 1600 (source: NCBI BLink).  protein_id AT1G19740.1p  transcript_id AT1G19740.1  protein_id AT1G19740.1p  transcript_id AT1G19740.1  
At1g19750	chr1:006826997	0.0	W/6826997-6827146,6827317-6827577,6827666-6827825,6828006-6828187,6828917-6829154,6829406-6829560,6829649-6829738,6829847-6829918,6830017-6830061	AT1G19750.1 CDS  gene_syn F14P1.15, F14P1_15  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G27840.1); Has 18098 Blast hits to 11475 proteins in 430 species: Archae - 16; Bacteria - 2711; Metazoa - 7460; Fungi - 3900; Plants - 1649; Viruses - 0; Other Eukaryotes - 2362 (source: NCBI BLink).  protein_id AT1G19750.1p  transcript_id AT1G19750.1  protein_id AT1G19750.1p  transcript_id AT1G19750.1  
At1g19770	chr1:006832426	0.0	W/6832426-6832468,6832564-6833702	AT1G19770.1 CDS  gene_syn ATPUP14, F14P1.13, F14P1_13  gene ATPUP14  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP14; purine transmembrane transporter  note ATPUP14; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP15; purine transmembrane transporter (TAIR:AT1G75470.1); Has 199 Blast hits to 193 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G19770.1p  transcript_id AT1G19770.1  protein_id AT1G19770.1p  transcript_id AT1G19770.1  
At1g19780	chr1:006833885	0.0	C/6833885-6834631,6834711-6835059,6835137-6835450,6835547-6835759,6835842-6836433,6836532-6836578	AT1G19780.1 CDS  gene_syn ATCNGC8, CNGC8, CYCLIC NUCLEOTIDE GATED CHANNEL 8, F14P1.12, F14P1_12  gene ATCNGC8  function member of Cyclic nucleotide gated channel family  go_component membrane|GO:0016020||IEA  go_process ion transport|GO:0006811||IEA  go_function ion channel activity|GO:0005216||ISS  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function cyclic nucleotide binding|GO:0030551||ISS  product ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8); calmodulin binding / cyclic nucleotide binding / ion channel  note CYCLIC NUCLEOTIDE GATED CHANNEL 8 (ATCNGC8); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding, conserved site (InterPro:IPR018488), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7); calmodulin binding / cyclic nucleotide binding / ion channel (TAIR:AT1G15990.1); Has 2840 Blast hits to 2729 proteins in 233 species: Archae - 0; Bacteria - 56; Metazoa - 1297; Fungi - 51; Plants - 657; Viruses - 0; Other Eukaryotes - 779 (source: NCBI BLink).  protein_id AT1G19780.1p  transcript_id AT1G19780.1  protein_id AT1G19780.1p  transcript_id AT1G19780.1  
At1g19790	chr1:006838400	0.0	C/6838400-6838788,6839183-6839831	AT1G19790.1 CDS  gene_syn F14P1.22, F14P1_22, SHI-RELATED SEQUENCE 7, SRS7  gene SRS7  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SRS7 (SHI-RELATED SEQUENCE 7)  note SHI-RELATED SEQUENCE 7 (SRS7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SRS5 (SHI-RELATED SEQUENCE 5) (TAIR:AT1G75520.1); Has 90 Blast hits to 90 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19790.1p  transcript_id AT1G19790.1  protein_id AT1G19790.1p  transcript_id AT1G19790.1  
At1g19790	chr1:006838400	0.0	C/6838400-6838788,6839183-6839831	AT1G19790.2 CDS  gene_syn F14P1.22, F14P1_22, SHI-RELATED SEQUENCE 7, SRS7  gene SRS7  function A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SRS7 (SHI-RELATED SEQUENCE 7)  note SHI-RELATED SEQUENCE 7 (SRS7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SRS5 (SHI-RELATED SEQUENCE 5) (TAIR:AT1G75520.1); Has 90 Blast hits to 90 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G19790.2p  transcript_id AT1G19790.2  protein_id AT1G19790.2p  transcript_id AT1G19790.2  
At1g19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.1 CDS  gene_syn F14P1.27, F14P1_27, TGD1, TRIGALACTOSYLDIACYLGLYCEROL 1  gene TGD1  function Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast inner membrane|GO:0009706|16199613|TAS  go_component chloroplast outer membrane|GO:0009707|12743031|IDA  go_component chloroplast envelope|GO:0009941|16199613|IDA  go_process lipid transport|GO:0006869|12743031|IMP  go_function lipid transporter activity|GO:0005319|12743031|IMP  product TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1); lipid transporter  note TRIGALACTOSYLDIACYLGLYCEROL 1 (TGD1); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453); Has 3422 Blast hits to 3422 proteins in 847 species: Archae - 0; Bacteria - 2640; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G19800.1p  transcript_id AT1G19800.1  protein_id AT1G19800.1p  transcript_id AT1G19800.1  
At1g19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.2 CDS  gene_syn F14P1.27, F14P1_27, TGD1, TRIGALACTOSYLDIACYLGLYCEROL 1  gene TGD1  function Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast inner membrane|GO:0009706|16199613|TAS  go_component chloroplast outer membrane|GO:0009707|12743031|IDA  go_component chloroplast envelope|GO:0009941|16199613|IDA  go_process lipid transport|GO:0006869|12743031|IMP  go_function lipid transporter activity|GO:0005319|12743031|IMP  product TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1); lipid transporter  note TRIGALACTOSYLDIACYLGLYCEROL 1 (TGD1); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453); Has 3422 Blast hits to 3422 proteins in 847 species: Archae - 0; Bacteria - 2640; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G19800.2p  transcript_id AT1G19800.2  protein_id AT1G19800.2p  transcript_id AT1G19800.2  
At1g19800	chr1:006846812	0.0	W/6846812-6846858,6846949-6847954	AT1G19800.3 CDS  gene_syn F14P1.27, F14P1_27, TGD1, TRIGALACTOSYLDIACYLGLYCEROL 1  gene TGD1  function Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast inner membrane|GO:0009706|16199613|TAS  go_component chloroplast outer membrane|GO:0009707|12743031|IDA  go_component chloroplast envelope|GO:0009941|16199613|IDA  go_process lipid transport|GO:0006869|12743031|IMP  go_function lipid transporter activity|GO:0005319|12743031|IMP  product TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1); lipid transporter  note TRIGALACTOSYLDIACYLGLYCEROL 1 (TGD1); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF140 (InterPro:IPR003453); Has 3422 Blast hits to 3422 proteins in 847 species: Archae - 0; Bacteria - 2640; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 756 (source: NCBI BLink).  protein_id AT1G19800.3p  transcript_id AT1G19800.3  protein_id AT1G19800.3p  transcript_id AT1G19800.3  
At1g19810	chr1:006848382	0.0	C/6848382-6849988	AT1G19810.1 pseudogenic_transcript  pseudo  gene_syn F14P1.17  note pseudogene, putative cell division control protein, blastp match of 53% identity and 2.2e-113 P-value to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695) corresponds to a region of the predicted gene.~similar to valosin-containing protein (U20213) {Oryza sativa (japonica cultivar-group)}  
At1g19830	chr1:006852230	0.0	W/6852230-6852583	AT1G19830.1 CDS  gene_syn F14P1.18, F14P1_18  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT1G75580.1); Has 651 Blast hits to 640 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 650; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19830.1p  transcript_id AT1G19830.1  protein_id AT1G19830.1p  transcript_id AT1G19830.1  
At1g19835	chr1:006856212	0.0	C/6856212-6856568,6856663-6856720,6856803-6859041,6859119-6859338,6859439-6859513	AT1G19835.1 CDS  gene_syn F14P1.24, F14P1_24  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47900.1); Has 44906 Blast hits to 23790 proteins in 1265 species: Archae - 546; Bacteria - 4089; Metazoa - 24989; Fungi - 3566; Plants - 1950; Viruses - 103; Other Eukaryotes - 9663 (source: NCBI BLink).  protein_id AT1G19835.1p  transcript_id AT1G19835.1  protein_id AT1G19835.1p  transcript_id AT1G19835.1  
At1g19840	chr1:006872794	0.0	C/6872794-6873255	AT1G19840.1 CDS  gene_syn F6F9.11, F6F9_11  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G75590.1); Has 713 Blast hits to 704 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 712; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19840.1p  transcript_id AT1G19840.1  protein_id AT1G19840.1p  transcript_id AT1G19840.1  
At1g19850	chr1:006887353	0.0	W/6887353-6887485,6887636-6887751,6887860-6887958,6888049-6888105,6888194-6888349,6888429-6888513,6888590-6888680,6888777-6888941,6889024-6889146,6889232-6889443,6889523-6890676,6890769-6890959,6891056-6891182	AT1G19850.1 CDS  gene_syn ARF5, AUXIN RESPONSE FACTOR 5, F6F9.10, F6F9_10, IAA24, INDOLEACETIC ACID 24, MONOPTEROS, MP, TRANSCRIPTION FACTOR IAA24  gene MP  function Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder.  go_component membrane|GO:0016020|17432890|IDA  go_component nucleus|GO:0005634|9482737|ISS  go_process response to auxin stimulus|GO:0009733|11283339|IEP  go_process embryonic development|GO:0009790|17553903|IGI  go_process flower development|GO:0009908|17553903|IGI  go_process longitudinal axis specification|GO:0009942|8904808|IMP  go_process xylem and phloem pattern formation|GO:0010051|8904808|IMP  go_process leaf vascular tissue pattern formation|GO:0010305|17553903|IGI  go_process root development|GO:0048364|17553903|IGI  go_process meristem development|GO:0048507|17553903|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9482737|ISS  go_function transcription factor activity|GO:0003700|9482737|TAS  go_function promoter binding|GO:0010843|19369397|IDA  product MP (MONOPTEROS); transcription factor  note MONOPTEROS (MP); FUNCTIONS IN: transcription factor activity; INVOLVED IN: in 8 processes; LOCATED IN: nucleus, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor (TAIR:AT1G30330.2); Has 1438 Blast hits to 1230 proteins in 61 species: Archae - 0; Bacteria - 11; Metazoa - 7; Fungi - 2; Plants - 1406; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G19850.1p  transcript_id AT1G19850.1  protein_id AT1G19850.1p  transcript_id AT1G19850.1  
At1g19860	chr1:006891654	0.0	C/6891654-6892518,6892616-6892740,6893039-6893236,6894347-6894400	AT1G19860.1 CDS  gene_syn F6F9.9, F6F9_9  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT3G51180.1); Has 137 Blast hits to 123 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 6; Plants - 102; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G19860.1p  transcript_id AT1G19860.1  protein_id AT1G19860.1p  transcript_id AT1G19860.1  
At1g19870	chr1:006895400	0.0	C/6895400-6895419,6895513-6896950,6897065-6897124,6897206-6897385,6897544-6898137,6898447-6898539	AT1G19870.1 CDS  gene_syn F6F9.8, F6F9_8, IQ-domain 32, iqd32  gene iqd32  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516||ISS  product iqd32 (IQ-domain 32); calmodulin binding  note IQ-domain 32 (iqd32); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQD31 (IQ-domain 31); calmodulin binding (TAIR:AT1G74690.1); Has 7574 Blast hits to 5259 proteins in 449 species: Archae - 14; Bacteria - 667; Metazoa - 3528; Fungi - 829; Plants - 616; Viruses - 32; Other Eukaryotes - 1888 (source: NCBI BLink).  protein_id AT1G19870.1p  transcript_id AT1G19870.1  protein_id AT1G19870.1p  transcript_id AT1G19870.1  
At1g19880	chr1:006900648	0.0	C/6900648-6900979,6901055-6901088,6901209-6901278,6901362-6901415,6901496-6901618,6901700-6901781,6901874-6901998,6902080-6902103,6902198-6902228,6902323-6902440,6902728-6902779,6902892-6903015,6903085-6903206,6903313-6903380,6903473-6903534,6903623-6903818	AT1G19880.1 CDS  gene_syn F6F9.7, F6F9_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: UVR8 (UVB-RESISTANCE 8); chromatin binding / guanyl-nucleotide exchange factor (TAIR:AT5G63860.1); Has 13465 Blast hits to 4777 proteins in 336 species: Archae - 54; Bacteria - 1500; Metazoa - 5495; Fungi - 742; Plants - 1322; Viruses - 16; Other Eukaryotes - 4336 (source: NCBI BLink).  protein_id AT1G19880.1p  transcript_id AT1G19880.1  protein_id AT1G19880.1p  transcript_id AT1G19880.1  
At1g19890	chr1:006905034	0.0	W/6905034-6905105,6905220-6905299,6905398-6905488,6905622-6905792	AT1G19890.1 CDS  gene_syn ATMGH3, F6F9.5, F6F9_5, MALE-GAMETE-SPECIFIC HISTONE H3, MGH3  gene MGH3  function histone 3.3, male-gamete-specific expression  go_function DNA binding|GO:0003677||IEA  go_component nucleus|GO:0005634|17555967|IEP  go_component generative cell nucleus|GO:0048555|17555967|IEP  go_process double fertilization forming a zygote and endosperm|GO:0009567|17555967|IEP  go_function DNA binding|GO:0003677||ISS  product MGH3 (MALE-GAMETE-SPECIFIC HISTONE H3); DNA binding  note MALE-GAMETE-SPECIFIC HISTONE H3 (MGH3); FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: generative cell nucleus, nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, K second mitotic division stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H3 (TAIR:AT5G10980.1); Has 10205 Blast hits to 10202 proteins in 5280 species: Archae - 0; Bacteria - 0; Metazoa - 7336; Fungi - 1302; Plants - 999; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).  protein_id AT1G19890.1p  transcript_id AT1G19890.1  protein_id AT1G19890.1p  transcript_id AT1G19890.1  
At1g19900	chr1:006907038	0.0	C/6907038-6908684	AT1G19900.1 CDS  gene_syn F6F9.4, F6F9_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glyoxal oxidase-related  note glyoxal oxidase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Region of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related (TAIR:AT1G75620.1); Has 559 Blast hits to 558 proteins in 112 species: Archae - 0; Bacteria - 222; Metazoa - 0; Fungi - 169; Plants - 151; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G19900.1p  transcript_id AT1G19900.1  protein_id AT1G19900.1p  transcript_id AT1G19900.1  
At1g19910	chr1:006913317	0.0	W/6913317-6913395,6913501-6913786,6914190-6914322	AT1G19910.1 CDS  gene_syn ATVHA-C2, AVA-2PE, AVA-P2, F6F9.3, F6F9_3, VACUOLAR H+-PUMPING ATPASE 16 KDA PROTEOLIPID, VACUOLAR-TYPE H+ ATPASE C2  gene AVA-P2  function vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p2)  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_component vacuolar proton-transporting V-type ATPase, V0 domain|GO:0000220|7579175|ISS  go_function ATPase activity|GO:0016887||ISS  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961|7579175|TAS  product AVA-P2; ATPase/ proton-transporting ATPase, rotational mechanism  note AVA-P2; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: vacuolar proton-transporting V-type ATPase, V0 domain, plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3); ATPase (TAIR:AT4G38920.1); Has 1813 Blast hits to 1633 proteins in 398 species: Archae - 127; Bacteria - 309; Metazoa - 519; Fungi - 314; Plants - 224; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).  protein_id AT1G19910.1p  transcript_id AT1G19910.1  protein_id AT1G19910.1p  transcript_id AT1G19910.1  
At1g19920	chr1:006914835	0.0	C/6914835-6914969,6915083-6915169,6915273-6915533,6915625-6916030,6916116-6916657	AT1G19920.1 CDS  gene_syn APS2, ASA1, ATP SULFURYLASE ARABIDOPSIS 1, ATP SULFURYLASE PRECURSOR, F6F9.2, F6F9_2  gene APS2  function encodes a chloroplast form of ATP sulfurylase  go_component chloroplast|GO:0009507|10806350|NAS  go_process sulfate assimilation|GO:0000103|7487067|TAS  go_process sulfate assimilation|GO:0000103|8647819|TAS  go_function sulfate adenylyltransferase (ATP) activity|GO:0004781|8647819|IMP  product APS2; sulfate adenylyltransferase (ATP)  note APS2; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), PUA-like (InterPro:IPR015947), ATP-sulfurylase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: APS1 (ATP SULFURYLASE 1); sulfate adenylyltransferase (ATP) (TAIR:AT3G22890.1); Has 1564 Blast hits to 1562 proteins in 426 species: Archae - 54; Bacteria - 515; Metazoa - 216; Fungi - 151; Plants - 136; Viruses - 0; Other Eukaryotes - 492 (source: NCBI BLink).  protein_id AT1G19920.1p  transcript_id AT1G19920.1  protein_id AT1G19920.1p  transcript_id AT1G19920.1  
At1g19930	chr1:006917020	0.0	W/6917020-6917545,6917630-6918138	AT1G19930.1 CDS  gene_syn F6F9.32, F6F9_32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G60570.1); Has 810 Blast hits to 788 proteins in 71 species: Archae - 2; Bacteria - 26; Metazoa - 190; Fungi - 0; Plants - 574; Viruses - 6; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G19930.1p  transcript_id AT1G19930.1  protein_id AT1G19930.1p  transcript_id AT1G19930.1  
At1g19940	chr1:006918323	0.0	C/6918323-6918652,6918742-6918908,6918989-6919127,6919214-6919648,6919721-6920004,6920076-6920268	AT1G19940.1 CDS  gene_syn Arabidopsis thaliana Glycosyl Hydrolase 9B5, AtGH9B5, F6F9.1, F6F9_1  gene AtGH9B5  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana Glycosyl Hydrolase 9B5 (AtGH9B5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G75680.1); Has 1148 Blast hits to 1144 proteins in 192 species: Archae - 0; Bacteria - 355; Metazoa - 133; Fungi - 14; Plants - 617; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G19940.1p  transcript_id AT1G19940.1  protein_id AT1G19940.1p  transcript_id AT1G19940.1  
At1g19950	chr1:006925043	0.0	W/6925043-6925074,6925165-6925263,6925361-6925417,6925507-6925570,6925676-6925882,6926039-6926527	AT1G19950.1 CDS  gene_syn HVA22-LIKE PROTEIN H (ATHVA22H), HVA22H, T20H2.26, T20H2_26  gene HVA22H  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H))  note HVA22-LIKE PROTEIN H (ATHVA22H) (HVA22H); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1 and HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: abscisic acid-responsive HVA22 family protein (TAIR:AT5G42560.1); Has 9477 Blast hits to 7351 proteins in 617 species: Archae - 22; Bacteria - 1240; Metazoa - 3851; Fungi - 1319; Plants - 1340; Viruses - 296; Other Eukaryotes - 1409 (source: NCBI BLink).  protein_id AT1G19950.1p  transcript_id AT1G19950.1  protein_id AT1G19950.1p  transcript_id AT1G19950.1  
At1g19960	chr1:006928083	0.0	W/6928083-6928277	AT1G19960.1 CDS  gene_syn T20H2.25, T20H2_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transmembrane receptor (TAIR:AT2G32140.1); Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 25; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G19960.1p  transcript_id AT1G19960.1  protein_id AT1G19960.1p  transcript_id AT1G19960.1  
At1g19968	chr1:006930261	0.0	W/6930261-6930985	AT1G19968.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G19968.1  
At1g19970	chr1:006931194	0.0	C/6931194-6931242,6931341-6931465,6931545-6931625,6931719-6931859,6932069-6932268,6932375-6932597	AT1G19970.1 CDS  gene_syn T20H2.24, T20H2_24  go_component integral to membrane|GO:0016021||IEA  go_process protein retention in ER lumen|GO:0006621||IEA  go_function ER retention sequence binding|GO:0046923||IEA  go_component integral to membrane|GO:0016021||ISS  go_process protein transport|GO:0015031||ISS  go_function receptor activity|GO:0004872||ISS  product ER lumen protein retaining receptor family protein  note ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G75760.1); Has 628 Blast hits to 627 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 114; Plants - 121; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G19970.1p  transcript_id AT1G19970.1  protein_id AT1G19970.1p  transcript_id AT1G19970.1  
At1g19980	chr1:006933162	0.0	W/6933162-6933365,6933489-6933600,6933696-6933760,6933853-6934371,6934515-6934643	AT1G19980.1 CDS  gene_syn T20H2.28, T20H2_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cytomatrix protein-related  note cytomatrix protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G77580.2); Has 7059 Blast hits to 5171 proteins in 438 species: Archae - 61; Bacteria - 623; Metazoa - 3252; Fungi - 506; Plants - 140; Viruses - 27; Other Eukaryotes - 2450 (source: NCBI BLink).  protein_id AT1G19980.1p  transcript_id AT1G19980.1  protein_id AT1G19980.1p  transcript_id AT1G19980.1  
At1g19990	chr1:006935327	0.0	W/6935327-6935611,6935718-6935813,6935904-6935974,6936362-6936665	AT1G19990.1 CDS  gene_syn T20H2.23, T20H2_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 10416 Blast hits to 6328 proteins in 368 species: Archae - 4; Bacteria - 381; Metazoa - 4559; Fungi - 839; Plants - 384; Viruses - 34; Other Eukaryotes - 4215 (source: NCBI BLink).  protein_id AT1G19990.1p  transcript_id AT1G19990.1  protein_id AT1G19990.1p  transcript_id AT1G19990.1  
At1g20000	chr1:006936898	0.0	C/6936898-6937420,6937575-6937666	AT1G20000.1 CDS  gene_syn T20H2.22, T20H2_22, TAF11b, TBP-ASSOCIATED FACTOR 11b  gene TAF11b  function Encodes TAF11b, a putative TBP-associated factor (TBP: TATA binding protein).  go_component nucleus|GO:0005634||IEA  go_process transcription initiation from RNA polymerase II promoter|GO:0006367||IEA  go_function DNA binding|GO:0003677||IEA  go_function RNA polymerase II transcription factor activity|GO:0003702||IEA  go_process transcription|GO:0006350||ISS  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF11b (TBP-ASSOCIATED FACTOR 11b); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor  note TBP-ASSOCIATED FACTOR 11b (TAF11b); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: nucleus; EXPRESSED IN: inflorescence, root, leaf; CONTAINS InterPro DOMAIN/s: TAFII28-like protein (InterPro:IPR006809), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TAF11 (TBP-ASSOCIATED FACTOR 11); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor (TAIR:AT4G20280.1); Has 271 Blast hits to 271 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 46; Plants - 22; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G20000.1p  transcript_id AT1G20000.1  protein_id AT1G20000.1p  transcript_id AT1G20000.1  
At1g20010	chr1:006938033	0.0	C/6938033-6938715,6938795-6939064,6940085-6940481	AT1G20010.1 CDS  gene_syn T20H2.21, T20H2_21, TUB5  gene TUB5  function beta tubulin  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component tubulin complex|GO:0045298|1498609|ISS  go_process microtubule-based process|GO:0007017|1498609|ISS  go_function structural constituent of cytoskeleton|GO:0005200|1498609|ISS  product TUB5; structural constituent of cytoskeleton  note TUB5; FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process; LOCATED IN: tubulin complex, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase (InterPro:IPR003008), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: TUB1; GTP binding / GTPase/ structural molecule (TAIR:AT1G75780.1); Has 17208 Blast hits to 17152 proteins in 3651 species: Archae - 34; Bacteria - 35; Metazoa - 3622; Fungi - 9655; Plants - 1012; Viruses - 0; Other Eukaryotes - 2850 (source: NCBI BLink).  protein_id AT1G20010.1p  transcript_id AT1G20010.1  protein_id AT1G20010.1p  transcript_id AT1G20010.1  
At1g20015	chr1:006941285	0.0	W/6941285-6941373	AT1G20015.1 snoRNA  gene_syn 51902.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G20015.1  
At1g20020	chr1:006942851	0.0	W/6942851-6942955,6943228-6943483,6943582-6943658,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.2 CDS  gene_syn ATLFNR2, FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR2, LEAF FNR 2, T20H2.20, T20H2_20  gene FNR2  function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid membrane|GO:0009535||IDA  go_component chloroplast stroma|GO:0009570||IDA  go_process oxidation reduction|GO:0055114||IDA  go_function NADPH dehydrogenase activity|GO:0003959||IDA  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding  note LEAF FNR 2 (ATLFNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis/ oxidoreductase/ poly(U) binding (TAIR:AT5G66190.1); Has 4539 Blast hits to 4539 proteins in 1033 species: Archae - 6; Bacteria - 2052; Metazoa - 670; Fungi - 492; Plants - 440; Viruses - 0; Other Eukaryotes - 879 (source: NCBI BLink).  protein_id AT1G20020.2p  transcript_id AT1G20020.2  protein_id AT1G20020.2p  transcript_id AT1G20020.2  
At1g20020	chr1:006942851	0.0	W/6942851-6942955,6943228-6943483,6943582-6943715,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.1 CDS  gene_syn ATLFNR2, FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR2, LEAF FNR 2, T20H2.20, T20H2_20  gene FNR2  function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid membrane|GO:0009535||IDA  go_component chloroplast stroma|GO:0009570||IDA  go_process oxidation reduction|GO:0055114||IDA  go_function NADPH dehydrogenase activity|GO:0003959||IDA  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding  note FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2 (FNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis/ oxidoreductase/ poly(U) binding (TAIR:AT5G66190.1); Has 4694 Blast hits to 4694 proteins in 1063 species: Archae - 8; Bacteria - 2171; Metazoa - 676; Fungi - 511; Plants - 442; Viruses - 0; Other Eukaryotes - 886 (source: NCBI BLink).  protein_id AT1G20020.1p  transcript_id AT1G20020.1  protein_id AT1G20020.1p  transcript_id AT1G20020.1  
At1g20020	chr1:006942851	0.0	W/6942851-6942955,6943228-6943486,6943585-6943715,6943791-6943869,6943955-6944046,6944164-6944241,6944319-6944381,6944479-6944713,6944801-6944868	AT1G20020.3 CDS  gene_syn ATLFNR2, FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2, FERREDOXIN:NADP(H) OXIDOREDUCTASE, FNR2, LEAF FNR 2, T20H2.20, T20H2_20  gene FNR2  function Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast thylakoid membrane|GO:0009535||IDA  go_component chloroplast stroma|GO:0009570||IDA  go_process oxidation reduction|GO:0055114||IDA  go_function NADPH dehydrogenase activity|GO:0003959||IDA  go_function poly(U) binding|GO:0008266|17511964|IDA  go_function oxidoreductase activity|GO:0016491||ISS  product FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2); NADPH dehydrogenase/ oxidoreductase/ poly(U) binding  note LEAF FNR 2 (ATLFNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1); NADPH dehydrogenase/ electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis/ oxidoreductase/ poly(U) binding (TAIR:AT5G66190.1); Has 4696 Blast hits to 4696 proteins in 1063 species: Archae - 8; Bacteria - 2171; Metazoa - 676; Fungi - 511; Plants - 442; Viruses - 0; Other Eukaryotes - 888 (source: NCBI BLink).  protein_id AT1G20020.3p  transcript_id AT1G20020.3  protein_id AT1G20020.3p  transcript_id AT1G20020.3  
At1g20030	chr1:006945725	0.0	W/6945725-6945770,6945845-6946547,6946816-6947017	AT1G20030.2 CDS  gene_syn T20H2.19, T20H2_19  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT1G75800.1); Has 1058 Blast hits to 1048 proteins in 144 species: Archae - 0; Bacteria - 24; Metazoa - 48; Fungi - 45; Plants - 930; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G20030.2p  transcript_id AT1G20030.2  protein_id AT1G20030.2p  transcript_id AT1G20030.2  
At1g20030	chr1:006945850	0.0	W/6945850-6946547,6946816-6947017	AT1G20030.1 CDS  gene_syn T20H2.19, T20H2_19  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process response to other organism|GO:0051707||ISS  go_function molecular_function|GO:0003674||ND  product pathogenesis-related thaumatin family protein  note pathogenesis-related thaumatin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: pathogenesis-related thaumatin family protein (TAIR:AT1G75800.1); Has 1057 Blast hits to 1048 proteins in 144 species: Archae - 0; Bacteria - 24; Metazoa - 48; Fungi - 45; Plants - 929; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G20030.1p  transcript_id AT1G20030.1  protein_id AT1G20030.1p  transcript_id AT1G20030.1  
At1g20040	chr1:006948860	0.0	C/6948860-6948943	AT1G20040.1 tRNA  gene_syn 51902.TRNA-LEU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Leu (anticodon: CAA)  transcript_id AT1G20040.1  
At1g20050	chr1:006949160	0.0	W/6949160-6949301,6949440-6949580,6949667-6949775,6949856-6950135	AT1G20050.1 CDS  gene_syn HYD1, HYDRA1  gene HYD1  function C-8 sterol isomerase  go_component plasma membrane|GO:0005886|17317660|IDA  go_process sterol biosynthetic process|GO:0016126|12100483|TAS  go_function C-8 sterol isomerase activity|GO:0000247|9862498|IMP  product HYD1 (HYDRA1); C-8 sterol isomerase  note HYDRA1 (HYD1); FUNCTIONS IN: C-8 sterol isomerase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Emopamil-binding (InterPro:IPR007905); Has 258 Blast hits to 258 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 107; Plants - 27; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G20050.1p  transcript_id AT1G20050.1  protein_id AT1G20050.1p  transcript_id AT1G20050.1  
At1g20060	chr1:006950723	0.0	C/6950723-6950818,6950917-6950998,6951086-6951213,6951334-6951424,6951550-6951680,6951778-6951864,6951955-6952014,6952132-6952224,6952309-6952398,6952479-6952571,6952656-6952745,6952827-6953012,6953146-6953300,6953470-6953515,6953632-6953734,6953818-6953900,6953998-6954048,6954157-6954321,6954675-6954810,6955008-6955102,6955205-6955331,6955479-6955678,6955769-6956293	AT1G20060.1 CDS  gene_syn T20H2.17, T20H2_17  go_component microtubule associated complex|GO:0005875||IEA  go_component chloroplast|GO:0009507||IEA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product ATP binding / microtubule motor  note ATP binding / microtubule motor; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: microtubule associated complex, chloroplast; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin-related protein (MKRP2) (TAIR:AT4G39050.1); Has 7948 Blast hits to 7493 proteins in 293 species: Archae - 4; Bacteria - 155; Metazoa - 4017; Fungi - 990; Plants - 805; Viruses - 2; Other Eukaryotes - 1975 (source: NCBI BLink).  protein_id AT1G20060.1p  transcript_id AT1G20060.1  protein_id AT1G20060.1p  transcript_id AT1G20060.1  
At1g20065	chr1:006956521	0.0	W/6956521-6958075	AT1G20065.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G20070  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G20065.1  
At1g20065	chr1:006956973	0.0	W/6956973-6957348	AT1G20065.2 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G20070  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G20065.2  
At1g20070	chr1:006958244	0.0	C/6958244-6958825	AT1G20070.1 CDS  gene_syn T20H2.15, T20H2_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20070.1p  transcript_id AT1G20070.1  protein_id AT1G20070.1p  transcript_id AT1G20070.1  
At1g20080	chr1:006962236	0.0	W/6962236-6962346,6962533-6962631,6962717-6962767,6962869-6962992,6963086-6963204,6963278-6963379,6963460-6963534,6963639-6963715,6963802-6964048,6964127-6964477,6964562-6964687,6964781-6964912	AT1G20080.1 CDS  gene_syn ATSYTB, NTMC2T1.2, NTMC2TYPE1.2, SYTB, T20H2.13, T20H2_13  gene SYTB  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SYTB  note SYTB; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: SYTA (SYNAPTOTAGMIN A) (TAIR:AT2G20990.1); Has 5745 Blast hits to 4253 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 4108; Fungi - 601; Plants - 651; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).  protein_id AT1G20080.1p  transcript_id AT1G20080.1  protein_id AT1G20080.1p  transcript_id AT1G20080.1  
At1g20090	chr1:006967223	0.0	W/6967223-6967318,6967617-6967704,6967790-6967899,6967981-6968044,6968193-6968257,6968340-6968405,6968505-6968603	AT1G20090.1 CDS  gene_syn ARAC4, ATRAC4, ATROP2, GTP-BINDING PROTEIN ARAC4, RHO-RELATED PROTEIN FROM PLANTS 2, ROP2, T20H2.12, T20H2_12  gene ROP2  function Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment. Inhibit light-induced stomatal opening.  go_component nucleus|GO:0005634|15469496|IDA  go_component nucleolus|GO:0005730|15469496|IDA  go_component cytoplasm|GO:0005737|15469496|IDA  go_component plasma membrane|GO:0005886|18178769|IDA  go_process microtubule cytoskeleton organization|GO:0000226|15766531|IMP  go_process cell morphogenesis|GO:0000902|15766531|IGI  go_process response to light stimulus|GO:0009416|18178769|IDA  go_process pollen tube growth|GO:0009860|12456757|IMP  go_process regulation of stomatal movement|GO:0010119|18178769|IMP  go_function GTP binding|GO:0005525|9349271|ISS  go_function GTP binding|GO:0005525||ISS  product ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2); GTP binding  note RHO-RELATED PROTEIN FROM PLANTS 2 (ROP2); FUNCTIONS IN: GTP binding; INVOLVED IN: cell morphogenesis, response to light stimulus, pollen tube growth, regulation of stomatal movement, microtubule cytoskeleton organization; LOCATED IN: nucleolus, plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Ras small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase (TAIR:AT1G75840.1); Has 19864 Blast hits to 19840 proteins in 570 species: Archae - 9; Bacteria - 52; Metazoa - 10854; Fungi - 2716; Plants - 1721; Viruses - 19; Other Eukaryotes - 4493 (source: NCBI BLink).  protein_id AT1G20090.1p  transcript_id AT1G20090.1  protein_id AT1G20090.1p  transcript_id AT1G20090.1  
At1g20100	chr1:006969314	0.0	C/6969314-6969819,6969909-6970179,6970619-6970699	AT1G20100.1 CDS  gene_syn T20H2.11, T20H2_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 414 Blast hits to 390 proteins in 79 species: Archae - 0; Bacteria - 9; Metazoa - 214; Fungi - 37; Plants - 53; Viruses - 1; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT1G20100.1p  transcript_id AT1G20100.1  protein_id AT1G20100.1p  transcript_id AT1G20100.1  
At1g20100	chr1:006969409	0.0	C/6969409-6969507,6969620-6969819,6969909-6970179,6970619-6970699	AT1G20100.2 CDS  gene_syn T20H2.11, T20H2_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75860.1); Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 14; Fungi - 0; Plants - 32; Viruses - 1; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G20100.2p  transcript_id AT1G20100.2  protein_id AT1G20100.2p  transcript_id AT1G20100.2  
At1g20110	chr1:006971554	0.0	W/6971554-6972558,6972631-6972717,6972810-6972941,6973043-6973174,6973329-6973394,6973480-6973590,6973736-6973828,6973938-6973971,6974062-6974129,6974501-6974578	AT1G20110.1 CDS  gene_syn T20H2.10, T20H2_10  go_process signal transduction|GO:0007165|15358268|ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product zinc finger (FYVE type) family protein  note zinc finger (FYVE type) family protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1); Has 25361 Blast hits to 16508 proteins in 676 species: Archae - 11; Bacteria - 1450; Metazoa - 10130; Fungi - 5149; Plants - 3412; Viruses - 575; Other Eukaryotes - 4634 (source: NCBI BLink).  protein_id AT1G20110.1p  transcript_id AT1G20110.1  protein_id AT1G20110.1p  transcript_id AT1G20110.1  
At1g20120	chr1:006975504	0.0	W/6975504-6975891,6976030-6976160,6976263-6976496,6976582-6976837,6976924-6977123	AT1G20120.1 CDS  gene_syn T20H2.29, T20H2_29  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product family II extracellular lipase, putative  note family II extracellular lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: hydrolase, acting on ester bonds / lipase (TAIR:AT1G20132.1); Has 2156 Blast hits to 2064 proteins in 232 species: Archae - 6; Bacteria - 355; Metazoa - 19; Fungi - 55; Plants - 1595; Viruses - 3; Other Eukaryotes - 123 (source: NCBI BLink).  protein_id AT1G20120.1p  transcript_id AT1G20120.1  protein_id AT1G20120.1p  transcript_id AT1G20120.1  
At1g20130	chr1:006977939	0.0	W/6977939-6978704,6978870-6979000,6979090-6979353,6979472-6979718,6979807-6980003	AT1G20130.1 CDS  gene_syn T20H2.9, T20H2_9  go_process lipid metabolic process|GO:0006629||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function lipase activity|GO:0016298||ISS  product hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall  note hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall; FUNCTIONS IN: structural constituent of cell wall, lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; CONTAINS InterPro DOMAIN/s: Pistil-specific extensin-like protein (InterPro:IPR003882), Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: hydrolase, acting on ester bonds / lipase (TAIR:AT1G20132.1); Has 281578 Blast hits to 80004 proteins in 2359 species: Archae - 1215; Bacteria - 68733; Metazoa - 101691; Fungi - 27522; Plants - 27422; Viruses - 8283; Other Eukaryotes - 46712 (source: NCBI BLink).  protein_id AT1G20130.1p  transcript_id AT1G20130.1  protein_id AT1G20130.1p  transcript_id AT1G20130.1  
At1g20132	chr1:006981358	0.0	W/6981358-6981694,6981876-6982006,6982081-6982314,6982958-6983213,6983302-6983495	AT1G20132.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product hydrolase, acting on ester bonds / lipase  note hydrolase, acting on ester bonds / lipase; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall (TAIR:AT1G20130.1); Has 1972 Blast hits to 1941 proteins in 215 species: Archae - 0; Bacteria - 336; Metazoa - 1; Fungi - 16; Plants - 1595; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G20132.1p  transcript_id AT1G20132.1  protein_id AT1G20132.1p  transcript_id AT1G20132.1  
At1g20135	chr1:006984124	0.0	W/6984124-6984364,6984497-6984627,6984716-6984952,6985034-6985283,6985371-6985498	AT1G20135.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  product hydrolase, acting on ester bonds / lipase  note hydrolase, acting on ester bonds / lipase; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT5G63170.1); Has 1564 Blast hits to 1551 proteins in 75 species: Archae - 0; Bacteria - 61; Metazoa - 1; Fungi - 6; Plants - 1494; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G20135.1p  transcript_id AT1G20135.1  protein_id AT1G20135.1p  transcript_id AT1G20135.1  
At1g20140	chr1:006986430	0.0	W/6986430-6986747,6986906-6987079	AT1G20140.1 CDS  gene_syn ARABIDOPSIS SKP1-LIKE 4, ASK4, T20H2.8, T20H2_8  gene ASK4  go_function protein binding|GO:0005515||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component SCF ubiquitin ligase complex|GO:0019005|12970487|ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|12970487|TAS  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  product ASK4 (ARABIDOPSIS SKP1-LIKE 4); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS SKP1-LIKE 4 (ASK4); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm; EXPRESSED IN: inflorescence meristem, male gametophyte, valve, septum, seed; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: ASK3 (ARABIDOPSIS SKP1-LIKE 3); protein binding / ubiquitin-protein ligase (TAIR:AT2G25700.1); Has 1096 Blast hits to 1094 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 499; Fungi - 112; Plants - 354; Viruses - 11; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G20140.1p  transcript_id AT1G20140.1  protein_id AT1G20140.1p  transcript_id AT1G20140.1  
At1g20150	chr1:006987332	0.0	C/6987332-6987927,6988007-6988217,6988304-6988418,6988530-6988772,6988851-6988951,6989021-6989534,6989617-6989734,6989831-6990096,6990183-6990361	AT1G20150.1 CDS  gene_syn T20H2.7, T20H2_7  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, root, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: ATSBT5.2; identical protein binding / serine-type endopeptidase (TAIR:AT1G20160.1); Has 3312 Blast hits to 3103 proteins in 608 species: Archae - 102; Bacteria - 1740; Metazoa - 90; Fungi - 189; Plants - 889; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).  protein_id AT1G20150.1p  transcript_id AT1G20150.1  protein_id AT1G20150.1p  transcript_id AT1G20150.1  
At1g20160	chr1:006990852	0.0	C/6990852-6991426,6991507-6991717,6991791-6991905,6991987-6992229,6992338-6992438,6992516-6993029,6993113-6993224,6993329-6993582,6993670-6993737	AT1G20160.2 CDS  gene_syn ATSBT5.2, T20H2.6, T20H2_6  gene ATSBT5.2  go_component apoplast|GO:0048046|18538804|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  product ATSBT5.2; identical protein binding / serine-type endopeptidase  note ATSBT5.2; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT1G20150.1); Has 5181 Blast hits to 4418 proteins in 775 species: Archae - 163; Bacteria - 2861; Metazoa - 164; Fungi - 474; Plants - 898; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink).  protein_id AT1G20160.2p  transcript_id AT1G20160.2  protein_id AT1G20160.2p  transcript_id AT1G20160.2  
At1g20160	chr1:006990852	0.0	C/6990852-6991426,6991507-6991717,6991791-6991905,6991987-6992229,6992338-6992438,6992516-6993029,6993113-6993224,6993329-6993582,6993670-6993854	AT1G20160.1 CDS  gene_syn ATSBT5.2, T20H2.6, T20H2_6  gene ATSBT5.2  go_component apoplast|GO:0048046|18538804|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_component apoplast|GO:0048046||IDA  go_process proteolysis|GO:0006508||ISS  product ATSBT5.2; identical protein binding / serine-type endopeptidase  note ATSBT5.2; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT1G20150.1); Has 5222 Blast hits to 4440 proteins in 781 species: Archae - 163; Bacteria - 2880; Metazoa - 167; Fungi - 492; Plants - 899; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink).  protein_id AT1G20160.1p  transcript_id AT1G20160.1  protein_id AT1G20160.1p  transcript_id AT1G20160.1  
At1g20170	chr1:006995282	0.0	C/6995282-6995353	AT1G20170.1 tRNA  gene_syn 51902.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: TTC)  transcript_id AT1G20170.1  
At1g20180	chr1:006996354	0.0	W/6996354-6996411,6996665-6997265,6997359-6997779	AT1G20180.2 CDS  gene_syn T20H2.5, T20H2_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49070.1); Has 71 Blast hits to 71 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20180.2p  transcript_id AT1G20180.2  protein_id AT1G20180.2p  transcript_id AT1G20180.2  
At1g20180	chr1:006996354	0.0	W/6996354-6996411,6996665-6997779	AT1G20180.1 CDS  gene_syn T20H2.5, T20H2_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49070.1); Has 104 Blast hits to 104 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20180.1p  transcript_id AT1G20180.1  protein_id AT1G20180.1p  transcript_id AT1G20180.1  
At1g20190	chr1:006998762	0.0	C/6998762-6999068,6999175-6999496,6999581-6999710	AT1G20190.1 CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN 11, ATEXP11, ATEXPA11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, T20H2.4, T20H2_4  gene ATEXPA11  function member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)  go_component cell wall|GO:0005618|15593128|IDA  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  product ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)  note ARABIDOPSIS THALIANA EXPANSIN 11 (ATEXPA11); INVOLVED IN: plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) (TAIR:AT1G69530.4); Has 1456 Blast hits to 1454 proteins in 132 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 48; Plants - 1370; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G20190.1p  transcript_id AT1G20190.1  protein_id AT1G20190.1p  transcript_id AT1G20190.1  
At1g20200	chr1:007001409	0.0	C/7001409-7001921,7002272-7002511,7002879-7002989,7003078-7003132,7003234-7003370,7003460-7003600,7003792-7003982,7004076-7004154	AT1G20200.1 CDS  gene_syn EMB2719, EMBRYO DEFECTIVE 2719, HAP15, HAPLESS 15, T20H2.3, T20H2_3  gene EMB2719  go_component plasma membrane|GO:0005886|17317660|IDA  go_function enzyme regulator activity|GO:0030234||IEA  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product EMB2719 (EMBRYO DEFECTIVE 2719); enzyme regulator  note EMBRYO DEFECTIVE 2719 (EMB2719); FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143), 26S proteasome regulatory subunit, C-terminal (InterPro:IPR013586); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit S3, putative (RPN3) (TAIR:AT1G75990.1); Has 549 Blast hits to 549 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 253; Fungi - 109; Plants - 101; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G20200.1p  transcript_id AT1G20200.1  protein_id AT1G20200.1p  transcript_id AT1G20200.1  
At1g20210	chr1:007004514	0.0	W/7004514-7004585	AT1G20210.1 tRNA  gene_syn 51902.TRNA-ASP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asp (anticodon: GTC)  transcript_id AT1G20210.1  
At1g20220	chr1:007005090	0.0	C/7005090-7005181,7005262-7005495,7005615-7005671,7005779-7005835,7005953-7006027,7006115-7006179,7006305-7006379,7006510-7006598,7006685-7006765,7007163-7007285	AT1G20220.1 CDS  gene_syn T20H2.2, T20H2_2  go_function nucleic acid binding|GO:0003676||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT1G76010.1); Has 42345 Blast hits to 16680 proteins in 1015 species: Archae - 19; Bacteria - 12355; Metazoa - 15425; Fungi - 3233; Plants - 4676; Viruses - 581; Other Eukaryotes - 6056 (source: NCBI BLink).  protein_id AT1G20220.1p  transcript_id AT1G20220.1  protein_id AT1G20220.1p  transcript_id AT1G20220.1  
At1g20225	chr1:007007966	0.0	C/7007966-7008148,7008413-7008574,7008722-7008824,7009065-7009318	AT1G20225.1 CDS  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76020.1); Has 156 Blast hits to 152 proteins in 51 species: Archae - 0; Bacteria - 81; Metazoa - 14; Fungi - 6; Plants - 28; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G20225.1p  transcript_id AT1G20225.1  protein_id AT1G20225.1p  transcript_id AT1G20225.1  
At1g20230	chr1:007009570	0.0	W/7009570-7011852	AT1G20230.1 CDS  gene_syn T20H2.1, T20H2_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G23330.1); Has 15470 Blast hits to 5271 proteins in 170 species: Archae - 0; Bacteria - 2; Metazoa - 110; Fungi - 76; Plants - 14880; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT1G20230.1p  transcript_id AT1G20230.1  protein_id AT1G20230.1p  transcript_id AT1G20230.1  
At1g20240	chr1:007012113	0.0	C/7012113-7013094,7014498-7015216	AT1G20240.1 CDS  gene_syn F14O10.14, F14O10_14  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1); Has 59 Blast hits to 30 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20240.1p  transcript_id AT1G20240.1  protein_id AT1G20240.1p  transcript_id AT1G20240.1  
At1g20250	chr1:007016516	0.0	W/7016516-7016588	AT1G20250.1 tRNA  gene_syn 61418.TRNA-LYS-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Lys (anticodon: CTT)  transcript_id AT1G20250.1  
At1g20260	chr1:007016971	0.0	W/7016971-7017022,7017436-7017491,7017596-7017694,7017821-7017880,7018032-7018143,7018230-7018441,7018717-7018845,7018963-7019100,7019188-7019338,7019429-7019511,7019640-7019687,7019777-7019830,7019922-7020005,7020105-7020290	AT1G20260.1 CDS  gene_syn F14O10.13, F14O10_13, VHA-B3  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process ATP synthesis coupled proton transport|GO:0015986||IEA  go_process proton transport|GO:0015992||IEA  go_process ATP metabolic process|GO:0046034||IEA  go_function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances|GO:0016820||IEA  go_function hydrogen ion transporting ATP synthase activity, rotational mechanism|GO:0046933||IEA  go_function proton-transporting ATPase activity, rotational mechanism|GO:0046961||IEA  product hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism  note hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: cotyledon, male gametophyte, guard cell, cultured cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit (TAIR:AT1G76030.1); Has 27320 Blast hits to 26657 proteins in 6970 species: Archae - 676; Bacteria - 12331; Metazoa - 1302; Fungi - 527; Plants - 6592; Viruses - 0; Other Eukaryotes - 5892 (source: NCBI BLink).  protein_id AT1G20260.1p  transcript_id AT1G20260.1  protein_id AT1G20260.1p  transcript_id AT1G20260.1  
At1g20270	chr1:007021383	0.0	C/7021383-7021456,7021558-7021745,7021832-7021961,7022116-7022213,7022327-7022424,7022562-7022646,7022733-7022923	AT1G20270.1 CDS  gene_syn F14O10.12, F14O10_12  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_process peptidyl-proline hydroxylation to 4-hydroxy-L-proline|GO:0018401||ISS  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT5G66060.1); Has 1891 Blast hits to 1879 proteins in 224 species: Archae - 0; Bacteria - 202; Metazoa - 941; Fungi - 57; Plants - 221; Viruses - 14; Other Eukaryotes - 456 (source: NCBI BLink).  protein_id AT1G20270.1p  transcript_id AT1G20270.1  protein_id AT1G20270.1p  transcript_id AT1G20270.1  
At1g20280	chr1:007023829	0.0	W/7023829-7023916,7024085-7024212	AT1G20280.1 CDS  gene_syn F14O10.15, F14O10_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product homeobox-leucine zipper protein-related  note homeobox-leucine zipper protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein-related (TAIR:AT1G61200.1); Has 13 Blast hits to 13 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20280.1p  transcript_id AT1G20280.1  protein_id AT1G20280.1p  transcript_id AT1G20280.1  
At1g20290	chr1:007025548	0.0	C/7025548-7026091,7026413-7026725,7028359-7028569,7029618-7029698	AT1G20290.1 CDS  gene_syn F14O10.11, F14O10_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20240.1); Has 49 Blast hits to 47 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20290.1p  transcript_id AT1G20290.1  protein_id AT1G20290.1p  transcript_id AT1G20290.1  
At1g20300	chr1:007029701	0.0	W/7029701-7031314	AT1G20300.1 CDS  gene_syn F14O10.10, F14O10_10  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G77360.1); Has 19529 Blast hits to 6019 proteins in 192 species: Archae - 5; Bacteria - 22; Metazoa - 563; Fungi - 464; Plants - 17637; Viruses - 0; Other Eukaryotes - 838 (source: NCBI BLink).  protein_id AT1G20300.1p  transcript_id AT1G20300.1  protein_id AT1G20300.1p  transcript_id AT1G20300.1  
At1g20310	chr1:007032308	0.0	W/7032308-7033030	AT1G20310.1 CDS  gene_syn F14O10.9, F14O10_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76070.1); Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20310.1p  transcript_id AT1G20310.1  protein_id AT1G20310.1p  transcript_id AT1G20310.1  
At1g20320	chr1:007033846	0.0	C/7033846-7034874	AT1G20320.1 CDS  gene_syn F14O10.8, F14O10_8  go_component nucleus|GO:0005634||IEA  go_function phosphoprotein phosphatase activity|GO:0004721||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT5G54210.1); Has 951 Blast hits to 949 proteins in 157 species: Archae - 0; Bacteria - 2; Metazoa - 250; Fungi - 185; Plants - 131; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink).  protein_id AT1G20320.1p  transcript_id AT1G20320.1  protein_id AT1G20320.1p  transcript_id AT1G20320.1  
At1g20330	chr1:007038968	0.0	C/7038968-7040053	AT1G20330.1 CDS  gene_syn COTYLEDON VASCULAR PATTERN 1, CVP1, F14O10.7, F14O10_7, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2  gene SMT2  function Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression.  go_component endoplasmic reticulum|GO:0005783|12215504|TAS  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process pattern specification process|GO:0007389|10559439|IMP  go_process multidimensional cell growth|GO:0009825|11029701|IMP  go_process xylem and phloem pattern formation|GO:0010051|12215504|IMP  go_process sterol biosynthetic process|GO:0016126|12215504|TAS  go_process sterol biosynthetic process|GO:0016126|9208946|IDA  go_process DNA endoreduplication|GO:0042023|15737981|IMP  go_function S-adenosylmethionine-dependent methyltransferase activity|GO:0008757|9208946|IDA  product SMT2 (STEROL METHYLTRANSFERASE 2); S-adenosylmethionine-dependent methyltransferase  note STEROL METHYLTRANSFERASE 2 (SMT2); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity; INVOLVED IN: xylem and phloem pattern formation, multidimensional cell growth, DNA endoreduplication, sterol biosynthetic process, pattern specification process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: SMT3 (STEROL METHYLTRANSFERASE 3); S-adenosylmethionine-dependent methyltransferase/ sterol 24-C-methyltransferase (TAIR:AT1G76090.1); Has 8186 Blast hits to 8183 proteins in 1283 species: Archae - 253; Bacteria - 4919; Metazoa - 150; Fungi - 299; Plants - 308; Viruses - 0; Other Eukaryotes - 2257 (source: NCBI BLink).  protein_id AT1G20330.1p  transcript_id AT1G20330.1  protein_id AT1G20330.1p  transcript_id AT1G20330.1  
At1g20340	chr1:007042770	0.0	C/7042770-7043273	AT1G20340.1 CDS  gene_syn DRT112, F14O10.6, F14O10_6, PETE2, PLASTOCYANIN 2  gene DRT112  function recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543|11826309|IDA  go_process response to UV|GO:0009411|8479917|IGI  go_process response to chemical stimulus|GO:0042221|8479917|IGI  go_process response to copper ion|GO:0046688|19084994|IEP  go_process copper ion homeostasis|GO:0055070|19084994|IMP  product DRT112; copper ion binding / electron carrier  note DRT112; FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to UV, copper ion homeostasis, response to chemical stimulus, response to copper ion; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: PETE1 (PLASTOCYANIN 1); copper ion binding / electron carrier (TAIR:AT1G76100.1); Has 1035 Blast hits to 1031 proteins in 168 species: Archae - 66; Bacteria - 284; Metazoa - 0; Fungi - 2; Plants - 169; Viruses - 4; Other Eukaryotes - 510 (source: NCBI BLink).  protein_id AT1G20340.1p  transcript_id AT1G20340.1  protein_id AT1G20340.1p  transcript_id AT1G20340.1  
At1g20350	chr1:007043737	0.0	W/7043737-7044393	AT1G20350.1 CDS  gene_syn ATTIM17-1, F14O10.5, F14O10_5  gene ATTIM17-1  function mitochondrial inner membrane translocase  go_process protein transport|GO:0015031||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|12692332|TAS  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744||ISS  go_process protein transport|GO:0015031||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product ATTIM17-1; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter  note ATTIM17-1; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial import inner membrane translocase, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: ATTIM17-2; P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter (TAIR:AT2G37410.2); Has 576 Blast hits to 573 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 290; Fungi - 137; Plants - 97; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G20350.1p  transcript_id AT1G20350.1  protein_id AT1G20350.1p  transcript_id AT1G20350.1  
At1g20360	chr1:007046767	0.0	C/7046767-7047675	AT1G20360.1 CDS  gene_syn F14O10.4, F14O10_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box protein-related  note F-box protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1); Has 66 Blast hits to 64 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20360.1p  transcript_id AT1G20360.1  protein_id AT1G20360.1p  transcript_id AT1G20360.1  
At1g20370	chr1:007051846	0.0	C/7051846-7052269,7052363-7053588	AT1G20370.1 CDS  gene_syn F14O10.3, F14O10_3  go_process pseudouridine synthesis|GO:0001522||IEA  go_process tRNA processing|GO:0008033||IEA  go_component cellular_component|GO:0005575||ND  go_function pseudouridine synthase activity|GO:0009982|18599582|TAS  go_function pseudouridine synthase activity|GO:0009982||ISS  product tRNA pseudouridine synthase family protein  note tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: tRNA pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 2413 Blast hits to 2196 proteins in 790 species: Archae - 88; Bacteria - 1223; Metazoa - 281; Fungi - 214; Plants - 87; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink).  protein_id AT1G20370.1p  transcript_id AT1G20370.1  protein_id AT1G20370.1p  transcript_id AT1G20370.1  
At1g20375	chr1:007058194	0.0	W/7058194-7058310	AT1G20375.1 miRNA  gene_syn MICRORNA394A, MIR394A  gene MIR394A  function Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340.  product MIR394A (MICRORNA394A); miRNA  transcript_id AT1G20375.1  
At1g20380	chr1:007061665	0.0	W/7061665-7061774,7062144-7062363,7062436-7062636,7062717-7062787,7062900-7063062,7063195-7063788,7063878-7064258,7064341-7064480,7064561-7064696,7064783-7064896,7064982-7065047	AT1G20380.1 CDS  gene_syn F14O10.2, F14O10_2  go_process proteolysis|GO:0006508||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  product prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative  note prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase active site region (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: serine-type endopeptidase/ serine-type peptidase (TAIR:AT1G76140.1); Has 6109 Blast hits to 6064 proteins in 786 species: Archae - 52; Bacteria - 2216; Metazoa - 260; Fungi - 29; Plants - 107; Viruses - 0; Other Eukaryotes - 3445 (source: NCBI BLink).  protein_id AT1G20380.1p  transcript_id AT1G20380.1  protein_id AT1G20380.1p  transcript_id AT1G20380.1  
At1g20390	chr1:007065494	0.0	W/7065494-7071561	AT1G20390.1 mRNA_TE_gene  pseudo  gene_syn F5M15.26, F5M15_26  note Transposable element gene, gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g20400	chr1:007072192	0.0	C/7072192-7072983,7073064-7073120,7073198-7073655,7073724-7073873,7073955-7074886,7075072-7075181,7075395-7075628,7075737-7075838	AT1G20400.1 CDS  gene_syn F5M15.25, F5M15_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1204 (InterPro:IPR009596); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT2G15420.1); Has 2135 Blast hits to 1782 proteins in 238 species: Archae - 14; Bacteria - 125; Metazoa - 886; Fungi - 161; Plants - 173; Viruses - 73; Other Eukaryotes - 703 (source: NCBI BLink).  protein_id AT1G20400.1p  transcript_id AT1G20400.1  protein_id AT1G20400.1p  transcript_id AT1G20400.1  
At1g20405	chr1:007077174	0.0	W/7077174-7077257,7077345-7077590	AT1G20405.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20680.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20405.1p  transcript_id AT1G20405.1  protein_id AT1G20405.1p  transcript_id AT1G20405.1  
At1g20410	chr1:007079049	0.0	C/7079049-7079124,7079225-7079280,7079354-7079414,7079508-7079581,7079702-7079782,7079893-7079967,7080055-7080174,7080252-7080332,7080420-7080488,7080653-7080724,7080852-7080898,7081407-7081518,7081690-7081798,7081892-7082226,7082358-7082504	AT1G20410.1 CDS  gene_syn F5M15.23, F5M15_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 431 Blast hits to 403 proteins in 151 species: Archae - 110; Bacteria - 0; Metazoa - 110; Fungi - 3; Plants - 20; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G20410.1p  transcript_id AT1G20410.1  protein_id AT1G20410.1p  transcript_id AT1G20410.1  
At1g20420	chr1:007082668	0.0	W/7082668-7082739	AT1G20420.1 tRNA  gene_syn 60115.TRNA-PRO-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G20420.1  
At1g20430	chr1:007083471	0.0	C/7083471-7083821	AT1G20430.1 CDS  gene_syn F5M15.30, F5M15_30  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20430.1p  transcript_id AT1G20430.1  protein_id AT1G20430.1p  transcript_id AT1G20430.1  
At1g20440	chr1:007084722	0.0	C/7084722-7085180,7085326-7085664	AT1G20440.1 CDS  gene_syn COLD-REGULATED 47, COR47, F5M15.22, F5M15_22, RD17  gene COR47  function Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.  go_component cellular_component|GO:0005575||ND  go_process response to stress|GO:0006950||ISS  go_process response to osmotic stress|GO:0006970|11779861|IGI  go_process response to cold|GO:0009409|16258011|IEP  go_process response to cold|GO:0009409|9668134|IEP  go_process response to water deprivation|GO:0009414|11779861|IMP  go_process response to water|GO:0009415||ISS  go_process cold acclimation|GO:0009631|15356392|IGI  go_process cold acclimation|GO:0009631|1731964|ISS  go_process response to abscisic acid stimulus|GO:0009737|10205894|IMP  go_process heat acclimation|GO:0010286|16807682|IEP  go_function molecular_function|GO:0003674||ND  product COR47 (COLD-REGULATED 47)  note COLD-REGULATED 47 (COR47); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding (TAIR:AT1G20450.2); Has 13535 Blast hits to 7773 proteins in 545 species: Archae - 38; Bacteria - 647; Metazoa - 5186; Fungi - 914; Plants - 1990; Viruses - 119; Other Eukaryotes - 4641 (source: NCBI BLink).  protein_id AT1G20440.1p  transcript_id AT1G20440.1  protein_id AT1G20440.1p  transcript_id AT1G20440.1  
At1g20450	chr1:007088235	0.0	C/7088235-7088674,7088768-7089107	AT1G20450.2 CDS  gene_syn EARLY RESPONSIVE TO DEHYDRATION 10, ER10, ERD10, F5M15.21, F5M15_21, LOW TEMPERATURE INDUCED 29, LOW TEMPERATURE INDUCED 45, LTI29, LTI45  gene ERD10  function Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.  go_component nucleus|GO:0005634|16487487|ISS  go_component cytoplasm|GO:0005737|15356392|IDA  go_component actin cytoskeleton|GO:0015629|17010111|IDA  go_component membrane|GO:0016020|15356392|IDA  go_process response to stress|GO:0006950||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|16574749|IEP  go_process response to cold|GO:0009409|7579189|IEP  go_process response to water deprivation|GO:0009414|8069491|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to water|GO:0009415||ISS  go_process cold acclimation|GO:0009631|15356392|IGI  go_process response to abscisic acid stimulus|GO:0009737|11292073|IEP  go_function actin binding|GO:0003779|17010111|IDA  product ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding  note EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); FUNCTIONS IN: actin binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, membrane, actin cytoskeleton, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: COR47 (COLD-REGULATED 47) (TAIR:AT1G20440.1); Has 6438 Blast hits to 3727 proteins in 364 species: Archae - 10; Bacteria - 259; Metazoa - 1947; Fungi - 271; Plants - 1531; Viruses - 34; Other Eukaryotes - 2386 (source: NCBI BLink).  protein_id AT1G20450.2p  transcript_id AT1G20450.2  protein_id AT1G20450.2p  transcript_id AT1G20450.2  
At1g20450	chr1:007088235	0.0	C/7088235-7088687,7088778-7089107	AT1G20450.1 CDS  gene_syn EARLY RESPONSIVE TO DEHYDRATION 10, ER10, ERD10, F5M15.21, F5M15_21, LOW TEMPERATURE INDUCED 29, LOW TEMPERATURE INDUCED 45, LTI29, LTI45  gene ERD10  function Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.  go_component nucleus|GO:0005634|16487487|ISS  go_component cytoplasm|GO:0005737|15356392|IDA  go_component actin cytoskeleton|GO:0015629|17010111|IDA  go_component membrane|GO:0016020|15356392|IDA  go_process response to stress|GO:0006950||ISS  go_process response to cold|GO:0009409|14535880|IEP  go_process response to cold|GO:0009409|16574749|IEP  go_process response to cold|GO:0009409|7579189|IEP  go_process response to water deprivation|GO:0009414|8069491|IEP  go_process response to water deprivation|GO:0009414|8075396|IEP  go_process response to water|GO:0009415||ISS  go_process cold acclimation|GO:0009631|15356392|IGI  go_process response to abscisic acid stimulus|GO:0009737|11292073|IEP  go_function actin binding|GO:0003779|17010111|IDA  product ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding  note EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); FUNCTIONS IN: actin binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, membrane, actin cytoskeleton, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: COR47 (COLD-REGULATED 47) (TAIR:AT1G20440.1); Has 7819 Blast hits to 4536 proteins in 382 species: Archae - 14; Bacteria - 254; Metazoa - 2624; Fungi - 356; Plants - 1582; Viruses - 67; Other Eukaryotes - 2922 (source: NCBI BLink).  protein_id AT1G20450.1p  transcript_id AT1G20450.1  protein_id AT1G20450.1p  transcript_id AT1G20450.1  
At1g20460	chr1:007091505	0.0	W/7091505-7091617,7092786-7092993	AT1G20460.1 CDS  gene_syn F5M15.20, F5M15_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20460.1p  transcript_id AT1G20460.1  protein_id AT1G20460.1p  transcript_id AT1G20460.1  
At1g20470	chr1:007094325	0.0	W/7094325-7094765	AT1G20470.1 CDS  gene_syn F5M15.19, F5M15_19  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT1G76190.1); Has 665 Blast hits to 653 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 664; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G20470.1p  transcript_id AT1G20470.1  protein_id AT1G20470.1p  transcript_id AT1G20470.1  
At1g20480	chr1:007094978	0.0	C/7094978-7095091,7095187-7095289,7095396-7095463,7095567-7095712,7095807-7097073	AT1G20480.1 CDS  gene_syn F5M15.29, F5M15_29  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_process phenylpropanoid metabolic process|GO:0009698||ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein  note 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase (TAIR:AT1G20510.1); Has 54393 Blast hits to 50143 proteins in 2280 species: Archae - 577; Bacteria - 29642; Metazoa - 3035; Fungi - 3052; Plants - 1324; Viruses - 1; Other Eukaryotes - 16762 (source: NCBI BLink).  protein_id AT1G20480.1p  transcript_id AT1G20480.1  protein_id AT1G20480.1p  transcript_id AT1G20480.1  
At1g20490	chr1:007097958	0.0	C/7097958-7098073,7098445-7099672	AT1G20490.1 CDS  gene_syn F5M15.28, F5M15_28  go_process metabolic process|GO:0008152||IEA  go_process phenylpropanoid metabolic process|GO:0009698||ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product AMP-dependent synthetase and ligase family protein  note AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate-CoA ligase (TAIR:AT1G20500.1); Has 41960 Blast hits to 39417 proteins in 2168 species: Archae - 541; Bacteria - 24826; Metazoa - 2594; Fungi - 2433; Plants - 1217; Viruses - 1; Other Eukaryotes - 10348 (source: NCBI BLink).  protein_id AT1G20490.1p  transcript_id AT1G20490.1  protein_id AT1G20490.1p  transcript_id AT1G20490.1  
At1g20500	chr1:007100502	0.0	C/7100502-7100615,7100733-7100835,7100951-7101018,7101103-7101248,7101626-7102847	AT1G20500.1 CDS  gene_syn F5M15.18, F5M15_18  go_process metabolic process|GO:0008152||IEA  go_process phenylpropanoid metabolic process|GO:0009698||ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product 4-coumarate-CoA ligase  note 4-coumarate-CoA ligase; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (TAIR:AT5G38120.1); Has 36389 Blast hits to 34545 proteins in 2106 species: Archae - 511; Bacteria - 22064; Metazoa - 2186; Fungi - 1964; Plants - 1068; Viruses - 1; Other Eukaryotes - 8595 (source: NCBI BLink).  protein_id AT1G20500.1p  transcript_id AT1G20500.1  protein_id AT1G20500.1p  transcript_id AT1G20500.1  
At1g20510	chr1:007103645	0.0	C/7103645-7103867,7103943-7104010,7104419-7104564,7104653-7105856	AT1G20510.1 CDS  gene_syn F5M15.17, F5M15_17, OPC-8:0 COA LIGASE1, OPCL1  gene OPCL1  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|16963437|IDA  go_process response to wounding|GO:0009611|17675405|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|16963437|IMP  go_process phenylpropanoid metabolic process|GO:0009698||ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase  note OPC-8:0 COA LIGASE1 (OPCL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate-CoA ligase (TAIR:AT1G20500.1); Has 55786 Blast hits to 51629 proteins in 2281 species: Archae - 597; Bacteria - 29739; Metazoa - 3091; Fungi - 3124; Plants - 1312; Viruses - 1; Other Eukaryotes - 17922 (source: NCBI BLink).  protein_id AT1G20510.1p  transcript_id AT1G20510.1  protein_id AT1G20510.1p  transcript_id AT1G20510.1  
At1g20510	chr1:007103939	0.0	C/7103939-7104010,7104419-7104564,7104653-7105856	AT1G20510.2 CDS  gene_syn F5M15.17, F5M15_17, OPC-8:0 COA LIGASE1, OPCL1  gene OPCL1  go_component peroxisome|GO:0005777|17951448|IDA  go_component peroxisome|GO:0005777|16963437|IDA  go_process response to wounding|GO:0009611|17675405|IEP  go_process jasmonic acid biosynthetic process|GO:0009695|16963437|IMP  go_process phenylpropanoid metabolic process|GO:0009698||ISS  go_function 4-coumarate-CoA ligase activity|GO:0016207||ISS  product OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase  note OPC-8:0 COA LIGASE1 (OPCL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate-CoA ligase (TAIR:AT1G20500.1); Has 53671 Blast hits to 49558 proteins in 2248 species: Archae - 587; Bacteria - 29184; Metazoa - 3033; Fungi - 3078; Plants - 1277; Viruses - 1; Other Eukaryotes - 16511 (source: NCBI BLink).  protein_id AT1G20510.2p  transcript_id AT1G20510.2  protein_id AT1G20510.2p  transcript_id AT1G20510.2  
At1g20515	chr1:007106165	0.0	W/7106165-7107977	AT1G20515.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G20520  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G20515.1  
At1g20520	chr1:007106922	0.0	C/7106922-7107617	AT1G20520.1 CDS  gene_syn F5M15.16, F5M15_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76210.1); Has 215 Blast hits to 211 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20520.1p  transcript_id AT1G20520.1  protein_id AT1G20520.1p  transcript_id AT1G20520.1  
At1g20530	chr1:007108370	0.0	C/7108370-7109009,7109088-7109311,7109397-7110377	AT1G20530.1 CDS  gene_syn F5M15.15, F5M15_15  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17110.1); Has 3064 Blast hits to 2309 proteins in 222 species: Archae - 37; Bacteria - 142; Metazoa - 1080; Fungi - 132; Plants - 334; Viruses - 0; Other Eukaryotes - 1339 (source: NCBI BLink).  protein_id AT1G20530.1p  transcript_id AT1G20530.1  protein_id AT1G20530.1p  transcript_id AT1G20530.1  
At1g20540	chr1:007112652	0.0	W/7112652-7112696,7112772-7112855,7112955-7113087,7113195-7113306,7113439-7113538,7113645-7113772,7113952-7114021,7114225-7114313,7114416-7114461,7114672-7114745,7114835-7114908,7114990-7115048,7115150-7115191	AT1G20540.1 CDS  gene_syn F5M15.14, F5M15_14  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G76260.1); Has 6759 Blast hits to 5575 proteins in 300 species: Archae - 0; Bacteria - 624; Metazoa - 3227; Fungi - 1427; Plants - 781; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).  protein_id AT1G20540.1p  transcript_id AT1G20540.1  protein_id AT1G20540.1p  transcript_id AT1G20540.1  
At1g20550	chr1:007115485	0.0	C/7115485-7115908,7116009-7116340,7116414-7116516,7116631-7116698,7116817-7117000,7117084-7117172,7117266-7117342,7117461-7117551,7117638-7117700,7117787-7117936	AT1G20550.1 CDS  gene_syn F5M15.13  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76270.1); Has 458 Blast hits to 423 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 458; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20550.1p  transcript_id AT1G20550.1  protein_id AT1G20550.1p  transcript_id AT1G20550.1  
At1g20560	chr1:007119927	0.0	C/7119927-7121363	AT1G20560.2 CDS  gene_syn AAE1, ACYL ACTIVATING ENZYME 1, F5M15.12, F5M15_12  gene AAE1  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function AMP binding|GO:0016208||ISS  product AAE1 (ACYL ACTIVATING ENZYME 1); AMP binding  note ACYL ACTIVATING ENZYME 1 (AAE1); FUNCTIONS IN: AMP binding; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G17650.1); Has 47809 Blast hits to 44625 proteins in 2200 species: Archae - 540; Bacteria - 27059; Metazoa - 2707; Fungi - 2173; Plants - 1217; Viruses - 1; Other Eukaryotes - 14112 (source: NCBI BLink).  protein_id AT1G20560.2p  transcript_id AT1G20560.2  protein_id AT1G20560.2p  transcript_id AT1G20560.2  
At1g20560	chr1:007119927	0.0	C/7119927-7121393,7121527-7121730	AT1G20560.1 CDS  gene_syn AAE1, ACYL ACTIVATING ENZYME 1, F5M15.12, F5M15_12  gene AAE1  go_process metabolic process|GO:0008152||IEA  go_function AMP binding|GO:0016208||ISS  product AAE1 (ACYL ACTIVATING ENZYME 1); AMP binding  note ACYL ACTIVATING ENZYME 1 (AAE1); FUNCTIONS IN: AMP binding; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G17650.1); Has 51225 Blast hits to 47390 proteins in 2212 species: Archae - 568; Bacteria - 27901; Metazoa - 2931; Fungi - 2228; Plants - 1263; Viruses - 1; Other Eukaryotes - 16333 (source: NCBI BLink).  protein_id AT1G20560.1p  transcript_id AT1G20560.1  protein_id AT1G20560.1p  transcript_id AT1G20560.1  
At1g20570	chr1:007122018	0.0	C/7122018-7122140,7122219-7122392,7122474-7122605,7122736-7122834,7123005-7123055,7123154-7123210,7123312-7123506,7123674-7123768,7123845-7123944,7124029-7124181,7124283-7125266,7125433-7125543,7125626-7125797,7125896-7125983,7126085-7126349,7126428-7126559	AT1G20570.1 CDS  gene_syn F5M15.11  go_component spindle pole|GO:0000922||IEA  go_component microtubule organizing center|GO:0005815||IEA  go_process microtubule cytoskeleton organization|GO:0000226||IEA  go_function tubulin binding|GO:0015631||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product tubulin family protein  note tubulin family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: emb1427 (embryo defective 1427); tubulin binding (TAIR:AT1G80260.1); Has 759 Blast hits to 684 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 498; Fungi - 112; Plants - 84; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G20570.1p  transcript_id AT1G20570.1  protein_id AT1G20570.1p  transcript_id AT1G20570.1  
At1g20575	chr1:007126987	0.0	C/7126987-7127091,7127189-7127303,7127391-7127555,7127646-7127671,7127748-7127824,7127906-7127939,7128034-7128133,7128559-7128677	AT1G20575.1 CDS  go_component endoplasmic reticulum|GO:0005783||ISS  go_process protein amino acid glycosylation|GO:0006486||ISS  go_function dolichyl-phosphate beta-D-mannosyltransferase activity|GO:0004582||ISS  go_function elongation factor-2 kinase activity|GO:0004686||ISS  product dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative  note dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative; FUNCTIONS IN: elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 2 protein (TAIR:AT2G39630.1); Has 14265 Blast hits to 14249 proteins in 1426 species: Archae - 553; Bacteria - 8256; Metazoa - 255; Fungi - 173; Plants - 49; Viruses - 21; Other Eukaryotes - 4958 (source: NCBI BLink).  protein_id AT1G20575.1p  transcript_id AT1G20575.1  protein_id AT1G20575.1p  transcript_id AT1G20575.1  
At1g20580	chr1:007128979	0.0	W/7128979-7129137,7129779-7129831,7129925-7129991,7130088-7130141,7130309-7130371	AT1G20580.1 CDS  gene_syn F5M15.9, F5M15_9  go_component nucleolus|GO:0005730|15496452|IDA  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: SmD3 (snRNP core protein SmD3) (TAIR:AT1G76300.1); Has 893 Blast hits to 893 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 391; Fungi - 219; Plants - 128; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G20580.1p  transcript_id AT1G20580.1  protein_id AT1G20580.1p  transcript_id AT1G20580.1  
At1g20590	chr1:007131166	0.0	C/7131166-7131322,7131416-7131594,7131693-7131791,7131878-7132037,7132179-7132183	AT1G20590.1 CDS  gene_syn F5M15.8, F5M15_8  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product cyclin, putative  note cyclin, putative; FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator (TAIR:AT1G20610.1); Has 2619 Blast hits to 2616 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 1427; Fungi - 321; Plants - 539; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).  protein_id AT1G20590.1p  transcript_id AT1G20590.1  protein_id AT1G20590.1p  transcript_id AT1G20590.1  
At1g20600	chr1:007133111	0.0	W/7133111-7133752,7134166-7134237	AT1G20600.1 CDS  gene_syn F5M15.7, F5M15_7  go_component membrane|GO:0016020|17432890|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  product DNA-binding protein-related  note DNA-binding protein-related; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT4G03170.1); Has 48 Blast hits to 48 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G20600.1p  transcript_id AT1G20600.1  protein_id AT1G20600.1p  transcript_id AT1G20600.1  
At1g20610	chr1:007135073	0.0	C/7135073-7135205,7135289-7135467,7135566-7135664,7135751-7135972,7136063-7136152,7136264-7136398,7136481-7136627,7136710-7136758,7136843-7136890,7136993-7137125,7137219-7137273	AT1G20610.1 CDS  gene_syn CYCB2;3, Cyclin B2;3, F5M15.6  gene CYCB2;3  go_component nucleus|GO:0005634||IEA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase regulator activity|GO:0016538||ISS  product CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator  note Cyclin B2;3 (CYCB2;3); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCB2;4 (CYCLIN B2;4); cyclin-dependent protein kinase regulator (TAIR:AT1G76310.1); Has 3436 Blast hits to 3428 proteins in 298 species: Archae - 0; Bacteria - 4; Metazoa - 1781; Fungi - 373; Plants - 749; Viruses - 30; Other Eukaryotes - 499 (source: NCBI BLink).  protein_id AT1G20610.1p  transcript_id AT1G20610.1  protein_id AT1G20610.1p  transcript_id AT1G20610.1  
At1g20620	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146134-7146193	AT1G20620.1 CDS  gene_syn CAT3, CATALASE 3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2  gene CAT3  function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|8819328|TAS  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process response to cold|GO:0009409|18230142|IEP  go_process response to light stimulus|GO:0009416|18230142|IEP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS  go_function catalase activity|GO:0004096|8819328|ISS  go_function catalase activity|GO:0004096||ISS  product CAT3 (CATALASE 3); catalase  note CATALASE 3 (CAT3); FUNCTIONS IN: catalase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 11 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: CAT2 (CATALASE 2); catalase (TAIR:AT4G35090.1); Has 3566 Blast hits to 3556 proteins in 1073 species: Archae - 17; Bacteria - 2349; Metazoa - 389; Fungi - 355; Plants - 348; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G20620.1p  transcript_id AT1G20620.1  protein_id AT1G20620.1p  transcript_id AT1G20620.1  
At1g20620	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146155-7146193	AT1G20620.5 CDS  gene_syn CAT3, CATALASE 3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2  gene CAT3  function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|8819328|TAS  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process response to cold|GO:0009409|18230142|IEP  go_process response to light stimulus|GO:0009416|18230142|IEP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS  go_function catalase activity|GO:0004096|8819328|ISS  go_function catalase activity|GO:0004096||ISS  product CAT3 (CATALASE 3); catalase  note CATALASE 3 (CAT3); FUNCTIONS IN: catalase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: CAT2 (CATALASE 2); catalase (TAIR:AT4G35090.1); Has 3565 Blast hits to 3555 proteins in 1073 species: Archae - 17; Bacteria - 2349; Metazoa - 389; Fungi - 355; Plants - 347; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G20620.5p  transcript_id AT1G20620.5  protein_id AT1G20620.5p  transcript_id AT1G20620.5  
At1g20620	chr1:007143142	0.0	W/7143142-7143156,7144207-7144303,7144459-7144736,7144829-7145605,7145691-7145807	AT1G20620.2 CDS  gene_syn CAT3, CATALASE 3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2  gene CAT3  function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|8819328|TAS  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process response to cold|GO:0009409|18230142|IEP  go_process response to light stimulus|GO:0009416|18230142|IEP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS  go_function catalase activity|GO:0004096|8819328|ISS  go_function catalase activity|GO:0004096||ISS  product CAT3 (CATALASE 3); catalase  note CATALASE 3 (CAT3); FUNCTIONS IN: catalase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614); BEST Arabidopsis thaliana protein match is: CAT2 (CATALASE 2); catalase (TAIR:AT4G35090.2); Has 3560 Blast hits to 3550 proteins in 1072 species: Archae - 17; Bacteria - 2349; Metazoa - 389; Fungi - 355; Plants - 342; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G20620.2p  transcript_id AT1G20620.2  protein_id AT1G20620.2p  transcript_id AT1G20620.2  
At1g20620	chr1:007144692	0.0	W/7144692-7144736,7144829-7145605,7145691-7145780,7145880-7146041,7146134-7146193	AT1G20620.4 CDS  gene_syn CAT3, CATALASE 3, F5M15.5, F5M15_5, SEN2, SENESCENCE 2  gene CAT3  function Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.  go_component cell wall|GO:0005618|16287169|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|8819328|TAS  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process response to cold|GO:0009409|18230142|IEP  go_process response to light stimulus|GO:0009416|18230142|IEP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process hydrogen peroxide catabolic process|GO:0042744|8819328|TAS  go_function catalase activity|GO:0004096|8819328|ISS  go_function catalase activity|GO:0004096||ISS  product CAT3 (CATALASE 3); catalase  note CATALASE 3 (CAT3); FUNCTIONS IN: catalase activity; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: CAT1 (CATALASE 1); catalase (TAIR:AT1G20630.1); Has 3489 Blast hits to 3483 proteins in 1063 species: Archae - 17; Bacteria - 2293; Metazoa - 380; Fungi - 354; Plants - 344; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G20620.4p  transcript_id AT1G20620.4  protein_id AT1G20620.4p  transcript_id AT1G20620.4  
At1g20630	chr1:007146812	0.0	W/7146812-7146826,7147413-7147509,7147783-7148060,7148239-7149015,7149106-7149195,7149286-7149353,7149456-7149609	AT1G20630.1 CDS  gene_syn CAT1, CATALASE 1, F5M15.31, F5M15_31  gene CAT1  function Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2.  go_component cell wall|GO:0005618|16287169|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component mitochondrion|GO:0005739|14671022|IDA  go_component peroxisome|GO:0005777|12943550|TAS  go_process cellular response to nitrogen starvation|GO:0006995|15032878|IEP  go_process response to light stimulus|GO:0009416|15608336|IEP  go_process response to light stimulus|GO:0009416|9214587|IEP  go_process response to abscisic acid stimulus|GO:0009737|18248592|IEP  go_process cellular response to sulfate starvation|GO:0009970|15032878|IEP  go_process cellular response to phosphate starvation|GO:0016036|15032878|IEP  go_process response to hydrogen peroxide|GO:0042542|18248592|IEP  go_function catalase activity|GO:0004096|9214587|ISS  go_function catalase activity|GO:0004096||ISS  product CAT1 (CATALASE 1); catalase  note CATALASE 1 (CAT1); FUNCTIONS IN: catalase activity; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, cytosolic ribosome, cell wall, peroxisome, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: CAT2 (CATALASE 2); catalase (TAIR:AT4G35090.1); Has 3550 Blast hits to 3540 proteins in 1069 species: Archae - 17; Bacteria - 2337; Metazoa - 389; Fungi - 355; Plants - 348; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G20630.1p  transcript_id AT1G20630.1  protein_id AT1G20630.1p  transcript_id AT1G20630.1  
At1g20640	chr1:007155201	0.0	W/7155201-7155980,7156062-7156109,7156184-7157096,7157193-7157986	AT1G20640.1 CDS  gene_syn F5M15.4  go_process nodulation|GO:0009877||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: nodulation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G76350.1); Has 329 Blast hits to 276 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G20640.1p  transcript_id AT1G20640.1  protein_id AT1G20640.1p  transcript_id AT1G20640.1  
At1g20640	chr1:007155201	0.0	W/7155201-7155980,7156062-7156109,7156184-7157096,7157193-7157986	AT1G20640.2 CDS  gene_syn F5M15.4  go_process nodulation|GO:0009877||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product RWP-RK domain-containing protein  note RWP-RK domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: nodulation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: RWP-RK domain-containing protein (TAIR:AT1G76350.1); Has 329 Blast hits to 276 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G20640.2p  transcript_id AT1G20640.2  protein_id AT1G20640.2p  transcript_id AT1G20640.2  
At1g20650	chr1:007158422	0.0	C/7158422-7158682,7158765-7159156,7159257-7159446,7159540-7159694,7159785-7159832,7159923-7160022	AT1G20650.1 CDS  gene_syn F5M15.3  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  product ATP binding / protein kinase/ protein serine/threonine kinase  note ATP binding / protein kinase/ protein serine/threonine kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G76370.1); Has 83142 Blast hits to 82041 proteins in 2963 species: Archae - 50; Bacteria - 7598; Metazoa - 36682; Fungi - 6438; Plants - 18478; Viruses - 356; Other Eukaryotes - 13540 (source: NCBI BLink).  protein_id AT1G20650.1p  transcript_id AT1G20650.1  protein_id AT1G20650.1p  transcript_id AT1G20650.1  
At1g20657	chr1:007161890	0.0	C/7161890-7163076	AT1G20657.1 pseudogenic_transcript  pseudo  function Pseudogene of AT3G61340; F-box family protein  
At1g20670	chr1:007164537	0.0	C/7164537-7165217,7165292-7165440,7165530-7165878,7165963-7166031,7166425-7166523,7166604-7166649,7166751-7166829,7166956-7166992,7167484-7167933	AT1G20670.1 CDS  gene_syn F2D10.15, F2D10_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function DNA binding|GO:0003677||ISS  product DNA-binding bromodomain-containing protein  note DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G76380.2); Has 9864 Blast hits to 6994 proteins in 241 species: Archae - 0; Bacteria - 93; Metazoa - 3979; Fungi - 1018; Plants - 350; Viruses - 7; Other Eukaryotes - 4417 (source: NCBI BLink).  protein_id AT1G20670.1p  transcript_id AT1G20670.1  protein_id AT1G20670.1p  transcript_id AT1G20670.1  
At1g20680	chr1:007168311	0.0	W/7168311-7168357,7169576-7169762,7169846-7170070,7170209-7170367,7170450-7170583,7172041-7172121,7172547-7172592,7173009-7173134,7173224-7173340	AT1G20680.1 CDS  gene_syn F2D10.17, F2D10_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20740.1); Has 68 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 11; Metazoa - 2; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G20680.1p  transcript_id AT1G20680.1  protein_id AT1G20680.1p  transcript_id AT1G20680.1  
At1g20690	chr1:007175086	0.0	W/7175086-7175808	AT1G20690.1 CDS  gene_syn F2D10.18, F2D10_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20940.1); Has 30 Blast hits to 28 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20690.1p  transcript_id AT1G20690.1  protein_id AT1G20690.1p  transcript_id AT1G20690.1  
At1g20693	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178470-7178487	AT1G20693.1 CDS  gene_syn HIGH MOBILITY GROUP B 2, HIGH MOBILITY GROUP BETA 1, HMG BETA 1, HMGB2, NFD02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2  gene HMGB2  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 2 (HMGB2); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 5911 Blast hits to 5186 proteins in 605 species: Archae - 2; Bacteria - 3; Metazoa - 4590; Fungi - 369; Plants - 388; Viruses - 9; Other Eukaryotes - 550 (source: NCBI BLink).  protein_id AT1G20693.1p  transcript_id AT1G20693.1  protein_id AT1G20693.1p  transcript_id AT1G20693.1  
At1g20693	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178473-7178487	AT1G20693.3 CDS  gene_syn HIGH MOBILITY GROUP B 2, HIGH MOBILITY GROUP BETA 1, HMG BETA 1, HMGB2, NFD02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2  gene HMGB2  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 2 (HMGB2); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 5805 Blast hits to 5093 proteins in 603 species: Archae - 0; Bacteria - 3; Metazoa - 4560; Fungi - 355; Plants - 366; Viruses - 7; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT1G20693.3p  transcript_id AT1G20693.3  protein_id AT1G20693.3p  transcript_id AT1G20693.3  
At1g20693	chr1:007177282	0.0	W/7177282-7177322,7177418-7177522,7177798-7177855,7177960-7178004,7178120-7178200,7178290-7178376,7178476-7178487	AT1G20693.2 CDS  gene_syn HIGH MOBILITY GROUP B 2, HIGH MOBILITY GROUP BETA 1, HMG BETA 1, HMGB2, NFD02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2  gene HMGB2  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 2 (HMGB2); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20696.3); Has 5714 Blast hits to 5014 proteins in 603 species: Archae - 0; Bacteria - 3; Metazoa - 4523; Fungi - 341; Plants - 357; Viruses - 7; Other Eukaryotes - 483 (source: NCBI BLink).  protein_id AT1G20693.2p  transcript_id AT1G20693.2  protein_id AT1G20693.2p  transcript_id AT1G20693.2  
At1g20696	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180754,7180983-7181069,7181157-7181174	AT1G20696.1 CDS  gene_syn HIGH MOBILITY GROUP B 3, HMGB3, NFD03, NFD3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR  gene HMGB3  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 3 (HMGB3); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20693.3); Has 4841 Blast hits to 4168 proteins in 434 species: Archae - 0; Bacteria - 0; Metazoa - 3716; Fungi - 308; Plants - 361; Viruses - 4; Other Eukaryotes - 452 (source: NCBI BLink).  protein_id AT1G20696.1p  transcript_id AT1G20696.1  protein_id AT1G20696.1p  transcript_id AT1G20696.1  
At1g20696	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180754,7180983-7181073,7181160-7181170	AT1G20696.3 CDS  gene_syn HIGH MOBILITY GROUP B 3, HMGB3, NFD03, NFD3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR  gene HMGB3  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 3 (HMGB3); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20693.3); Has 4640 Blast hits to 3977 proteins in 429 species: Archae - 0; Bacteria - 0; Metazoa - 3618; Fungi - 279; Plants - 344; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink).  protein_id AT1G20696.3p  transcript_id AT1G20696.3  protein_id AT1G20696.3p  transcript_id AT1G20696.3  
At1g20696	chr1:007179825	0.0	W/7179825-7179865,7179999-7180094,7180368-7180425,7180537-7180581,7180674-7180760,7180990-7181069,7181157-7181193	AT1G20696.2 CDS  gene_syn HIGH MOBILITY GROUP B 3, HMGB3, NFD03, NFD3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR  gene HMGB3  function Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.  go_component chromatin|GO:0000785|12653554|TAS  go_process chromatin assembly or disassembly|GO:0006333|12653554|TAS  go_function DNA binding|GO:0003677|9461286|IDA  go_function DNA binding|GO:0003677|9461286|ISS  go_function chromatin binding|GO:0003682|12653554|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function structural constituent of chromatin|GO:0030527|12653554|TAS  product HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor  note HIGH MOBILITY GROUP B 3 (HMGB3); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMGB2 (HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor (TAIR:AT1G20693.3); Has 4188 Blast hits to 3563 proteins in 392 species: Archae - 0; Bacteria - 0; Metazoa - 3265; Fungi - 252; Plants - 323; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).  protein_id AT1G20696.2p  transcript_id AT1G20696.2  protein_id AT1G20696.2p  transcript_id AT1G20696.2  
At1g20700	chr1:007182558	0.0	W/7182558-7182762,7183349-7183735,7183823-7183866	AT1G20700.1 CDS  gene_syn ATWOX14, F2D10.19, F2D10_19, WOX14, WUSCHEL RELATED HOMEOBOX 14  gene WOX14  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. Functions in the shoot meristem organizing center to maintain the stem cells in an undifferentiated state.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process primary shoot apical meristem specification|GO:0010072|18653559|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX14 (WUSCHEL RELATED HOMEOBOX 14); DNA binding / transcription factor  note WUSCHEL RELATED HOMEOBOX 14 (WOX14); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: primary shoot apical meristem specification, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: WOX10 (WUSCHEL related homeobox 10); DNA binding / transcription factor (TAIR:AT1G20710.1); Has 382 Blast hits to 382 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 4; Plants - 290; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G20700.1p  transcript_id AT1G20700.1  protein_id AT1G20700.1p  transcript_id AT1G20700.1  
At1g20710	chr1:007184485	0.0	W/7184485-7184641,7184733-7185128,7185227-7185267	AT1G20710.1 CDS  gene_syn F2D10.20, F2D10_20, WOX10, WUSCHEL related homeobox 10  gene WOX10  function Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product WOX10 (WUSCHEL related homeobox 10); DNA binding / transcription factor  note WUSCHEL related homeobox 10 (WOX10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: WOX14 (WUSCHEL RELATED HOMEOBOX 14); DNA binding / transcription factor (TAIR:AT1G20700.1); Has 398 Blast hits to 398 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 4; Plants - 308; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G20710.1p  transcript_id AT1G20710.1  protein_id AT1G20710.1p  transcript_id AT1G20710.1  
At1g20720	chr1:007185658	0.0	C/7185658-7185702,7185782-7185904,7186069-7186140,7186248-7186432,7186715-7187121,7187302-7187507,7187594-7187728,7187802-7187926,7188018-7188065,7188159-7188280,7188366-7188394,7188499-7188543,7188720-7188901,7188986-7189142,7189260-7189343,7189418-7189511,7189855-7189963,7190063-7190152,7190241-7190319,7190403-7190490,7190880-7190950,7191031-7191104,7191191-7191252,7191380-7191521,7191600-7191700,7191792-7191839,7191924-7191988,7192088-7192163,7192256-7192337,7192413-7192794	AT1G20720.1 CDS  gene_syn F2D10.21, F2D10_21  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding  note ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1 and 2, ATP-binding, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: helicase-related (TAIR:AT1G20750.1); Has 1851 Blast hits to 1472 proteins in 375 species: Archae - 118; Bacteria - 290; Metazoa - 614; Fungi - 296; Plants - 93; Viruses - 3; Other Eukaryotes - 437 (source: NCBI BLink).  protein_id AT1G20720.1p  transcript_id AT1G20720.1  protein_id AT1G20720.1p  transcript_id AT1G20720.1  
At1g20730	chr1:007194276	0.0	W/7194276-7194364,7194425-7194608,7194684-7194905,7195009-7195155,7195263-7195387,7196612-7196649,7197783-7198681	AT1G20730.1 CDS  gene_syn F2D10.22, F2D10_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20740.1); Has 303 Blast hits to 300 proteins in 118 species: Archae - 0; Bacteria - 180; Metazoa - 8; Fungi - 0; Plants - 63; Viruses - 2; Other Eukaryotes - 50 (source: NCBI BLink).  protein_id AT1G20730.1p  transcript_id AT1G20730.1  protein_id AT1G20730.1p  transcript_id AT1G20730.1  
At1g20740	chr1:007200394	0.0	W/7200394-7200457,7200502-7200728,7200807-7201031,7201146-7201289,7201398-7201538	AT1G20740.1 CDS  gene_syn F2D10.23, F2D10_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20730.1); Has 224 Blast hits to 224 proteins in 100 species: Archae - 0; Bacteria - 149; Metazoa - 11; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G20740.1p  transcript_id AT1G20740.1  protein_id AT1G20740.1p  transcript_id AT1G20740.1  
At1g20750	chr1:007203302	0.0	C/7203302-7203454,7203562-7203633,7203714-7204530,7204628-7204848,7204927-7205060,7205112-7205281,7205357-7205385,7205497-7205541,7205655-7205836,7205919-7206075,7206177-7206260,7206333-7206426,7206513-7206615,7206690-7206779,7206871-7206949,7207033-7207120,7207208-7207278,7207366-7207439,7207511-7207572,7207653-7207788,7207857-7207957,7208049-7208096,7208185-7208249,7208349-7208424,7208516-7208579,7208674-7208998	AT1G20750.1 CDS  gene_syn F2D10.24, F2D10_24  go_component chloroplast|GO:0009507|15028209|IDA  go_process nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|GO:0006139||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA binding|GO:0003677||IEA  go_function ATP-dependent DNA helicase activity|GO:0004003||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|GO:0016818||IEA  product helicase-related  note helicase-related; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1 and 2, ATP-binding, DinG/Rad3-type (InterPro:IPR014013), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding (TAIR:AT1G20720.1); Has 1796 Blast hits to 1318 proteins in 305 species: Archae - 89; Bacteria - 170; Metazoa - 677; Fungi - 309; Plants - 92; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).  protein_id AT1G20750.1p  transcript_id AT1G20750.1  protein_id AT1G20750.1p  transcript_id AT1G20750.1  
At1g20760	chr1:007209515	0.0	W/7209515-7209655,7210007-7211048,7211328-7211546,7211632-7211849,7211938-7212012,7212494-7212565,7212644-7212742,7213030-7213101,7213192-7213306,7213419-7213487,7213586-7213944,7214195-7214773	AT1G20760.1 CDS  gene_syn F2D10.25, F2D10_25  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G21630.1); Has 10692 Blast hits to 4147 proteins in 323 species: Archae - 12; Bacteria - 3271; Metazoa - 3323; Fungi - 1334; Plants - 262; Viruses - 16; Other Eukaryotes - 2474 (source: NCBI BLink).  protein_id AT1G20760.1p  transcript_id AT1G20760.1  protein_id AT1G20760.1p  transcript_id AT1G20760.1  
At1g20770	chr1:007215345	0.0	C/7215345-7215421,7215505-7215592,7215683-7215732,7215816-7215962,7216085-7216202,7216481-7216648	AT1G20770.1 CDS  gene_syn F2D10.26, F2D10_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 37 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 2; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20770.1p  transcript_id AT1G20770.1  protein_id AT1G20770.1p  transcript_id AT1G20770.1  
At1g20780	chr1:007217812	0.0	W/7217812-7218348,7218445-7218754,7219051-7220609	AT1G20780.1 CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 44, ATPUB44, F2D10.27, F2D10_27, PLANT U-BOX 44, PUB44, SAUL1, SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1  gene SAUL1  function Encodes a protein containing a U-box and an ARM domain.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process regulation of abscisic acid biosynthetic process|GO:0010115|19309463|IMP  go_process senescence|GO:0010149|19309463|IMP  go_process regulation of chlorophyll catabolic process|GO:0010271|19309463|IMP  go_process regulation of chlorophyll biosynthetic process|GO:0010380|19309463|IMP  go_function ubiquitin-protein ligase activity|GO:0004842|19309463|IDA  product SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1); ubiquitin-protein ligase  note SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1 (SAUL1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: regulation of chlorophyll biosynthetic process, regulation of chlorophyll catabolic process, regulation of abscisic acid biosynthetic process, senescence; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), U box (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT1G76390.2); Has 1641 Blast hits to 1583 proteins in 139 species: Archae - 0; Bacteria - 18; Metazoa - 357; Fungi - 111; Plants - 1004; Viruses - 3; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G20780.1p  transcript_id AT1G20780.1  protein_id AT1G20780.1p  transcript_id AT1G20780.1  
At1g20790	chr1:007220961	0.0	C/7220961-7222268	AT1G20790.1 CDS  gene_syn F2D10.28, F2D10_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20795.1); Has 1721 Blast hits to 619 proteins in 150 species: Archae - 2; Bacteria - 422; Metazoa - 391; Fungi - 63; Plants - 324; Viruses - 75; Other Eukaryotes - 444 (source: NCBI BLink).  protein_id AT1G20790.1p  transcript_id AT1G20790.1  protein_id AT1G20790.1p  transcript_id AT1G20790.1  
At1g20795	chr1:007226310	0.0	C/7226310-7227566	AT1G20795.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20790.1); Has 65 Blast hits to 62 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20795.1p  transcript_id AT1G20795.1  protein_id AT1G20795.1p  transcript_id AT1G20795.1  
At1g20800	chr1:007228718	0.0	C/7228718-7229648,7231053-7231600	AT1G20800.1 CDS  gene_syn F2D10.30, F2D10_30  function F-box family protein  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G20795.1).  protein_id AT1G20800.1p  transcript_id AT1G20800.1  protein_id AT1G20800.1p  transcript_id AT1G20800.1  
At1g20810	chr1:007232025	0.0	W/7232025-7232289,7232551-7232621,7232717-7232803,7232883-7233032,7233119-7233178,7233302-7233367	AT1G20810.1 CDS  gene_syn F2D10.32, F2D10_32  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid lumen|GO:0031977|11719511|IDA  go_process protein folding|GO:0006457||IEA  go_component chloroplast thylakoid lumen|GO:0009543|11719511|IDA  go_component chloroplast thylakoid lumen|GO:0009543||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  go_function FK506 binding|GO:0005528||ISS  product immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein  note immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative (TAIR:AT3G10060.1); Has 1226 Blast hits to 1216 proteins in 397 species: Archae - 0; Bacteria - 652; Metazoa - 72; Fungi - 47; Plants - 158; Viruses - 0; Other Eukaryotes - 297 (source: NCBI BLink).  protein_id AT1G20810.1p  transcript_id AT1G20810.1  protein_id AT1G20810.1p  transcript_id AT1G20810.1  
At1g20816	chr1:007233814	0.0	W/7233814-7233906,7234275-7234349,7234430-7234582,7234671-7234769,7234858-7234941	AT1G20816.1 CDS  gene_syn F2D10.33, F2D10_33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76405.2); Has 28 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G20816.1p  transcript_id AT1G20816.1  protein_id AT1G20816.1p  transcript_id AT1G20816.1  
At1g20823	chr1:007238880	0.0	W/7238880-7239473	AT1G20823.1 CDS  gene_syn F2D10.34, F2D10_34  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process response to chitin|GO:0010200|17722694|IEP  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: ATL8; protein binding / zinc ion binding (TAIR:AT1G76410.1); Has 6059 Blast hits to 6039 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 2063; Fungi - 426; Plants - 2686; Viruses - 21; Other Eukaryotes - 863 (source: NCBI BLink).  protein_id AT1G20823.1p  transcript_id AT1G20823.1  protein_id AT1G20823.1p  transcript_id AT1G20823.1  
At1g20820	chr1:007242761	0.0	C/7242761-7242832	AT1G20820.1 tRNA  gene_syn 61258.TRNA-TRP-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Trp (anticodon: CCA)  transcript_id AT1G20820.1  
At1g20830	chr1:007242933	0.0	W/7242933-7242980,7243103-7243384,7243754-7243926,7244095-7244482,7244578-7244736	AT1G20830.1 CDS  gene_syn F2D10.35, F2D10_35  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20830.1p  transcript_id AT1G20830.1  protein_id AT1G20830.1p  transcript_id AT1G20830.1  
At1g20840	chr1:007245107	0.0	C/7245107-7245557,7245641-7245828,7245923-7246848,7246927-7247487,7247596-7247674	AT1G20840.1 CDS  gene_syn F9H16.18, F9H16_18, TMT1, TONOPLAST MONOSACCHARIDE TRANSPORTER1  gene TMT1  function The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type vacuole membrane|GO:0009705|17158605|IDA  go_component membrane|GO:0016020||ISS  go_process response to cold|GO:0009409|17158605|IEP  go_process response to water deprivation|GO:0009414|17158605|IEP  go_process response to nematode|GO:0009624|16478044|IEP  go_process response to salt stress|GO:0009651|17158605|IEP  go_process response to sucrose stimulus|GO:0009744|17158605|IEP  go_process response to glucose stimulus|GO:0009749|17158605|IEP  go_process response to fructose stimulus|GO:0009750|17158605|IEP  go_function nucleoside transmembrane transporter activity|GO:0005337||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter  note TONOPLAST MONOSACCHARIDE TRANSPORTER1 (TMT1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: in 7 processes; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2); carbohydrate transmembrane transporter/ nucleoside transmembrane transporter/ sugar:hydrogen symporter (TAIR:AT4G35300.1); Has 30001 Blast hits to 21732 proteins in 1381 species: Archae - 428; Bacteria - 11632; Metazoa - 6371; Fungi - 7846; Plants - 2133; Viruses - 0; Other Eukaryotes - 1591 (source: NCBI BLink).  protein_id AT1G20840.1p  transcript_id AT1G20840.1  protein_id AT1G20840.1p  transcript_id AT1G20840.1  
At1g20850	chr1:007252208	0.0	W/7252208-7252685,7252772-7253007,7253090-7253230,7253322-7253537	AT1G20850.1 CDS  gene_syn F9H16.17, F9H16_17, PAPAIN-TYPE CYSTEINE ENDOPEPTIDASE XCP2, XCP2, xylem cysteine peptidase 2  gene XCP2  go_component cell wall|GO:0005618|15593128|IDA  go_process proteolysis|GO:0006508||ISS  go_process developmental programmed cell death|GO:0010623|18573193|IMP  go_function peptidase activity|GO:0008233|10889267|ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product XCP2 (xylem cysteine peptidase 2); cysteine-type peptidase/ peptidase  note xylem cysteine peptidase 2 (XCP2); FUNCTIONS IN: peptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, developmental programmed cell death; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: XCP1 (XYLEM CYSTEINE PEPTIDASE 1); cysteine-type endopeptidase/ cysteine-type peptidase (TAIR:AT4G35350.1); Has 6049 Blast hits to 6003 proteins in 574 species: Archae - 29; Bacteria - 92; Metazoa - 2825; Fungi - 4; Plants - 1220; Viruses - 118; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT1G20850.1p  transcript_id AT1G20850.1  protein_id AT1G20850.1p  transcript_id AT1G20850.1  
At1g20860	chr1:007254007	0.0	C/7254007-7254925,7257992-7258677	AT1G20860.1 CDS  gene_syn F9H16.16, F9H16_16  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function phosphate transmembrane transporter activity|GO:0015114||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product phosphate transporter family protein  note phosphate transporter family protein; FUNCTIONS IN: phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter family protein (TAIR:AT1G76430.1); Has 17862 Blast hits to 17806 proteins in 1235 species: Archae - 328; Bacteria - 11987; Metazoa - 1474; Fungi - 2489; Plants - 835; Viruses - 0; Other Eukaryotes - 749 (source: NCBI BLink).  protein_id AT1G20860.1p  transcript_id AT1G20860.1  protein_id AT1G20860.1p  transcript_id AT1G20860.1  
At1g20870	chr1:007259287	0.0	C/7259287-7259531,7259629-7260775	AT1G20870.1 CDS  gene_syn F9H16.15, F9H16_15  go_component cellular_component|GO:0005575||ND  product unknown protein  note LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54850.1); Has 48 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G20870.1p  transcript_id AT1G20870.1  protein_id AT1G20870.1p  transcript_id AT1G20870.1  
At1g20875	chr1:007261481	0.0	W/7261481-7261681	AT1G20875.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G20875.1p  transcript_id AT1G20875.1  protein_id AT1G20875.1p  transcript_id AT1G20875.1  
At1g20880	chr1:007262879	0.0	C/7262879-7263181,7263285-7263327,7263871-7263997,7264140-7264284,7264628-7264834	AT1G20880.1 CDS  gene_syn F9H16.14, F9H16_14  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G76460.1); Has 11636 Blast hits to 9514 proteins in 483 species: Archae - 0; Bacteria - 541; Metazoa - 6778; Fungi - 1119; Plants - 2221; Viruses - 0; Other Eukaryotes - 977 (source: NCBI BLink).  protein_id AT1G20880.1p  transcript_id AT1G20880.1  protein_id AT1G20880.1p  transcript_id AT1G20880.1  
At1g20890	chr1:007266088	0.0	C/7266088-7266230,7266342-7266432,7266513-7266644,7266737-7266875,7266972-7267060	AT1G20890.1 CDS  gene_syn F9H16.13, F9H16_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76480.1); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G20890.1p  transcript_id AT1G20890.1  protein_id AT1G20890.1p  transcript_id AT1G20890.1  
At1g20900	chr1:007273024	0.0	W/7273024-7273959	AT1G20900.1 CDS  gene_syn AHL27, ESC, ESCAROLA, F9H16.12, F9H16_12, ORE7, ORESARA 7  gene ESC  function Encodes an AT hook domain containing protein that acts redundantly with SOB3 to modulate hypocotyl growth inhibition in response to light.  go_component nucleus|GO:0005634|17971039|IDA  go_process establishment or maintenance of chromatin architecture|GO:0006325|17971039|IMP  go_process photomorphogenesis|GO:0009640|18088311|IMP  go_process leaf senescence|GO:0010150|17971039|IMP  go_function double-stranded DNA binding|GO:0003690|17971039|IDA  product ESC (ESCAROLA); double-stranded DNA binding  note ESCAROLA (ESC); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: leaf senescence, establishment or maintenance of chromatin architecture, photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: SOB3 (SUPPRESSOR OF PHYB-4 3); DNA binding (TAIR:AT1G76500.1); Has 1873 Blast hits to 1666 proteins in 180 species: Archae - 0; Bacteria - 506; Metazoa - 530; Fungi - 103; Plants - 491; Viruses - 15; Other Eukaryotes - 228 (source: NCBI BLink).  protein_id AT1G20900.1p  transcript_id AT1G20900.1  protein_id AT1G20900.1p  transcript_id AT1G20900.1  
At1g20910	chr1:007277209	0.0	C/7277209-7277304,7277397-7277489,7277732-7277782,7277894-7277960,7278131-7278194,7278272-7278320,7278476-7278598,7279041-7279133,7279392-7279437,7279534-7279586,7279956-7279995,7280081-7280214,7280348-7280635	AT1G20910.1 CDS  gene_syn F9H16.11, F9H16_11  go_component intracellular|GO:0005622||IEA  go_component intracellular|GO:0005622||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARID/BRIGHT DNA-binding domain-containing protein  note ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2); Has 550 Blast hits to 550 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 388; Fungi - 53; Plants - 79; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G20910.1p  transcript_id AT1G20910.1  protein_id AT1G20910.1p  transcript_id AT1G20910.1  
At1g20920	chr1:007285342	0.0	W/7285342-7288842	AT1G20920.1 CDS  gene_syn F9H16.10, F9H16_10  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G09620.1); Has 311341 Blast hits to 125887 proteins in 2991 species: Archae - 1477; Bacteria - 39060; Metazoa - 141008; Fungi - 36045; Plants - 14531; Viruses - 1599; Other Eukaryotes - 77621 (source: NCBI BLink).  protein_id AT1G20920.1p  transcript_id AT1G20920.1  protein_id AT1G20920.1p  transcript_id AT1G20920.1  
At1g20920	chr1:007286356	0.0	W/7286356-7288842	AT1G20920.2 CDS  gene_syn F9H16.10, F9H16_10  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product DEAD box RNA helicase, putative  note DEAD box RNA helicase, putative; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G09620.1); Has 29791 Blast hits to 29110 proteins in 1752 species: Archae - 496; Bacteria - 11912; Metazoa - 5594; Fungi - 3574; Plants - 1454; Viruses - 10; Other Eukaryotes - 6751 (source: NCBI BLink).  protein_id AT1G20920.2p  transcript_id AT1G20920.2  protein_id AT1G20920.2p  transcript_id AT1G20920.2  
At1g20925	chr1:007290612	0.0	W/7290612-7290752,7290831-7290910,7290983-7291107,7291182-7291303,7291399-7291533,7291610-7291702,7291793-7291893,7291973-7292025,7292114-7292299,7292383-7292507	AT1G20925.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process auxin polar transport|GO:0009926||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  product auxin efflux carrier family protein  note auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: auxin efflux carrier family protein (TAIR:AT1G76520.2); Has 376 Blast hits to 360 proteins in 73 species: Archae - 2; Bacteria - 22; Metazoa - 0; Fungi - 124; Plants - 181; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G20925.1p  transcript_id AT1G20925.1  protein_id AT1G20925.1p  transcript_id AT1G20925.1  
At1g20930	chr1:007292752	0.0	C/7292752-7292847,7292942-7293080,7293172-7293241,7293329-7293422,7293555-7293666,7293759-7293820,7293909-7294050,7294432-7294664	AT1G20930.1 CDS  gene_syn CDKB2;2, CYCLIN-DEPENDENT KINASE B2;2, F9H16.8, F9H16_8  gene CDKB2;2  function Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle.  go_process M phase of mitotic cell cycle|GO:0000087|12000456|IEP  go_process regulation of mitotic cell cycle|GO:0007346|11432958|TAS  go_process hormone-mediated signaling|GO:0009755|18223038|IEP  go_process hormone-mediated signaling|GO:0009755|18223038|IMP  go_process regulation of meristem organization|GO:0009934|18223038|IMP  go_process regulation of G2/M transition of mitotic cell cycle|GO:0010389|18223038|IMP  go_function cyclin-dependent protein kinase activity|GO:0004693|11432958|TAS  go_function kinase activity|GO:0016301||ISS  product CDKB2;2 (CYCLIN-DEPENDENT KINASE B2;2); cyclin-dependent protein kinase/ kinase  note CYCLIN-DEPENDENT KINASE B2;2 (CDKB2;2); FUNCTIONS IN: kinase activity, cyclin-dependent protein kinase activity; INVOLVED IN: regulation of meristem organization, regulation of mitotic cell cycle, hormone-mediated signaling, regulation of G2/M transition of mitotic cell cycle, M phase of mitotic cell cycle; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CDKB2;1 (cyclin-dependent kinase B2;1); cyclin-dependent protein kinase/ kinase/ protein binding (TAIR:AT1G76540.1); Has 80335 Blast hits to 79201 proteins in 1949 species: Archae - 42; Bacteria - 6262; Metazoa - 35505; Fungi - 8000; Plants - 14015; Viruses - 403; Other Eukaryotes - 16108 (source: NCBI BLink).  protein_id AT1G20930.1p  transcript_id AT1G20930.1  protein_id AT1G20930.1p  transcript_id AT1G20930.1  
At1g20940	chr1:007295274	0.0	C/7295274-7296518	AT1G20940.1 CDS  gene_syn F9H16.7, F9H16_7  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20240.1); Has 42 Blast hits to 40 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G20940.1p  transcript_id AT1G20940.1  protein_id AT1G20940.1p  transcript_id AT1G20940.1  
At1g20950	chr1:007297467	0.0	C/7297467-7297580,7297685-7297850,7297936-7298045,7298144-7298260,7298349-7298453,7298575-7298631,7298724-7298768,7298860-7298970,7299059-7299132,7299226-7299319,7299415-7299495,7299684-7299737,7299880-7299963,7300045-7300112,7300199-7300312,7300407-7300481,7300575-7300687,7300788-7300960,7301247-7301336	AT1G20950.1 CDS  gene_syn F9H16.6, F9H16_6  go_component pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex|GO:0010317||ISS  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function diphosphate-fructose-6-phosphate 1-phosphotransferase activity|GO:0047334||ISS  product pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related  note pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative (TAIR:AT1G76550.1); Has 2379 Blast hits to 2314 proteins in 706 species: Archae - 15; Bacteria - 1516; Metazoa - 2; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink).  protein_id AT1G20950.1p  transcript_id AT1G20950.1  protein_id AT1G20950.1p  transcript_id AT1G20950.1  
At1g20960	chr1:007302591	0.0	C/7302591-7305776,7305879-7306268,7306975-7309914	AT1G20960.1 CDS  gene_syn F9H16.5, F9H16_5, emb1507, embryo defective 1507  gene emb1507  go_component nucleolus|GO:0005730|15496452|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product emb1507 (embryo defective 1507); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding  note embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT2G42270.1); Has 13822 Blast hits to 8453 proteins in 1026 species: Archae - 1055; Bacteria - 3787; Metazoa - 2595; Fungi - 1690; Plants - 529; Viruses - 118; Other Eukaryotes - 4048 (source: NCBI BLink).  protein_id AT1G20960.1p  transcript_id AT1G20960.1  protein_id AT1G20960.1p  transcript_id AT1G20960.1  
At1g20967	chr1:007313081	0.0	W/7313081-7313227	AT1G20967.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G20967.1p  transcript_id AT1G20967.1  protein_id AT1G20967.1p  transcript_id AT1G20967.1  
At1g20970	chr1:007314338	0.0	W/7314338-7316579,7316676-7316914,7317001-7317159,7317262-7317441,7317660-7317854,7317952-7318050,7318129-7318749,7318887-7319246	AT1G20970.1 CDS  gene_syn F9H16.4, F9H16_4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: PPI1 (PROTON PUMP INTERACTOR 1); protein binding (TAIR:AT4G27500.1); Has 53409 Blast hits to 33585 proteins in 1572 species: Archae - 464; Bacteria - 7066; Metazoa - 25076; Fungi - 5173; Plants - 1740; Viruses - 257; Other Eukaryotes - 13633 (source: NCBI BLink).  protein_id AT1G20970.1p  transcript_id AT1G20970.1  protein_id AT1G20970.1p  transcript_id AT1G20970.1  
At1g20980	chr1:007325042	0.0	W/7325042-7325538,7325626-7325831,7325929-7326731,7326823-7326897,7326989-7327096,7327180-7327297,7327391-7327526,7327609-7327753,7327832-7328431,7328514-7328933	AT1G20980.1 CDS  gene_syn ATSPL14, F9H16.3, F9H16_3, FBR6, SPL14, SPL1R2, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14, squamosa promoter binding protein-like 14  gene SPL14  function Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component nucleus|GO:0005634|15703061|IDA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|15703061|IDA  go_function DNA binding|GO:0003677|15703061|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|15703061|IDA  product SPL14 (squamosa promoter binding protein-like 14); DNA binding / transcription activator/ transcription factor  note squamosa promoter binding protein-like 14 (SPL14); FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: defense response to bacterium, regulation of transcription; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333), Ankyrin (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: transcription factor (TAIR:AT1G76580.1); Has 1555 Blast hits to 820 proteins in 90 species: Archae - 0; Bacteria - 33; Metazoa - 293; Fungi - 89; Plants - 601; Viruses - 0; Other Eukaryotes - 539 (source: NCBI BLink).  protein_id AT1G20980.1p  transcript_id AT1G20980.1  protein_id AT1G20980.1p  transcript_id AT1G20980.1  
At1g20990	chr1:007330524	0.0	C/7330524-7331068,7331532-7331946	AT1G20990.1 CDS  gene_syn F9H16.2, F9H16_2  go_component chloroplast|GO:0009507||IEA  product DC1 domain-containing protein  note DC1 domain-containing protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16050.1); Has 1278 Blast hits to 551 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 0; Plants - 1255; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G20990.1p  transcript_id AT1G20990.1  protein_id AT1G20990.1p  transcript_id AT1G20990.1  
At1g21000	chr1:007337919	0.0	W/7337919-7337921,7338007-7338210,7338298-7338513,7338771-7339088	AT1G21000.1 CDS  gene_syn F9H16.1, F9H16_1  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT1G76590.1); Has 193 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21000.1p  transcript_id AT1G21000.1  protein_id AT1G21000.1p  transcript_id AT1G21000.1  
At1g21000	chr1:007338013	0.0	W/7338013-7338210,7338298-7338513,7338771-7339088	AT1G21000.2 CDS  gene_syn F9H16.1, F9H16_1  go_process biological_process|GO:0008150||ND  go_function binding|GO:0005488||ISS  product zinc-binding family protein  note zinc-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: zinc-binding family protein (TAIR:AT1G76590.1); Has 193 Blast hits to 193 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21000.2p  transcript_id AT1G21000.2  protein_id AT1G21000.2p  transcript_id AT1G21000.2  
At1g21010	chr1:007346239	0.0	W/7346239-7346871	AT1G21010.1 CDS  gene_syn F9H16.19, F9H16_19  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76600.1); Has 113 Blast hits to 113 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21010.1p  transcript_id AT1G21010.1  protein_id AT1G21010.1p  transcript_id AT1G21010.1  
At1g21020	chr1:007353540	0.0	W/7353540-7357981	AT1G21020.1 mRNA_TE_gene  pseudo  gene_syn T22I11.15, T22I11_15  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G08740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G26530.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G44890.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1)  
At1g21040	chr1:007359983	0.0	C/7359983-7363334	AT1G21040.1 mRNA_TE_gene  pseudo  gene_syn T22I11.14  note Transposable element gene, Mutator-like transposase family, has a 3.3e-87 P-value blast match to Q9SLM0 /314-478 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g21050	chr1:007366859	0.0	W/7366859-7367596	AT1G21050.1 CDS  gene_syn T22I11.13, T22I11_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76610.1); Has 134 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21050.1p  transcript_id AT1G21050.1  protein_id AT1G21050.1p  transcript_id AT1G21050.1  
At1g21060	chr1:007371799	0.0	W/7371799-7371857,7371947-7372013,7372098-7372160,7372248-7372532,7372610-7372959,7373055-7373154,7373238-7373291,7373371-7373457,7373543-7373671,7373762-7374085	AT1G21060.1 CDS  gene_syn T22I11.12, T22I11_12  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76620.1); Has 316 Blast hits to 310 proteins in 52 species: Archae - 0; Bacteria - 26; Metazoa - 29; Fungi - 3; Plants - 240; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G21060.1p  transcript_id AT1G21060.1  protein_id AT1G21060.1p  transcript_id AT1G21060.1  
At1g21065	chr1:007374210	0.0	W/7374210-7374503,7374623-7374683,7374794-7374888,7374968-7375001,7375166-7375220,7375320-7375362,7375573-7375644	AT1G21065.1 CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 2768 Blast hits to 2763 proteins in 706 species: Archae - 132; Bacteria - 1316; Metazoa - 36; Fungi - 64; Plants - 43; Viruses - 0; Other Eukaryotes - 1177 (source: NCBI BLink).  protein_id AT1G21065.1p  transcript_id AT1G21065.1  protein_id AT1G21065.1p  transcript_id AT1G21065.1  
At1g21070	chr1:007376148	0.0	C/7376148-7376507,7376589-7376750,7377085-7377285,7377381-7377565,7377672-7377810	AT1G21070.1 CDS  gene_syn T22I11.10, T22I11_10  go_component membrane|GO:0016020||ISS  product transporter-related  note transporter-related; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G76670.1); Has 1300 Blast hits to 1295 proteins in 167 species: Archae - 0; Bacteria - 18; Metazoa - 331; Fungi - 208; Plants - 587; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT1G21070.1p  transcript_id AT1G21070.1  protein_id AT1G21070.1p  transcript_id AT1G21070.1  
At1g21080	chr1:007378822	0.0	C/7378822-7378926,7379332-7379469,7379582-7379662,7379753-7379931,7380133-7380291,7380410-7380536,7380802-7380927	AT1G21080.2 CDS  gene_syn T22I11.9, T22I11_9  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1).  protein_id AT1G21080.2p  transcript_id AT1G21080.2  protein_id AT1G21080.2p  transcript_id AT1G21080.2  
At1g21080	chr1:007378822	0.0	C/7378822-7378926,7379332-7379469,7379582-7379662,7379753-7379931,7380133-7380291,7380410-7380536,7380802-7380958,7381099-7381181,7381805-7381864,7382189-7382275	AT1G21080.1 CDS  gene_syn T22I11.9, T22I11_9  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product DNAJ heat shock N-terminal domain-containing protein  note DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1); Has 15885 Blast hits to 15795 proteins in 1909 species: Archae - 104; Bacteria - 5202; Metazoa - 3341; Fungi - 1479; Plants - 1172; Viruses - 17; Other Eukaryotes - 4570 (source: NCBI BLink).  protein_id AT1G21080.1p  transcript_id AT1G21080.1  protein_id AT1G21080.1p  transcript_id AT1G21080.1  
At1g21090	chr1:007384854	0.0	W/7384854-7385007,7385099-7385214,7385638-7386024,7386128-7386199	AT1G21090.1 CDS  gene_syn T22I11.8, T22I11_8  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; LOCATED IN: anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972); Has 179 Blast hits to 175 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 19; Fungi - 8; Plants - 142; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G21090.1p  transcript_id AT1G21090.1  protein_id AT1G21090.1p  transcript_id AT1G21090.1  
At1g21100	chr1:007386991	0.0	C/7386991-7387290,7387407-7387779,7387870-7388318	AT1G21100.1 CDS  gene_syn T22I11.7, T22I11_7  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: stem, cotyledon, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21130.1); Has 2126 Blast hits to 2123 proteins in 426 species: Archae - 0; Bacteria - 600; Metazoa - 84; Fungi - 432; Plants - 916; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).  protein_id AT1G21100.1p  transcript_id AT1G21100.1  protein_id AT1G21100.1p  transcript_id AT1G21100.1  
At1g21110	chr1:007390110	0.0	C/7390110-7390409,7390503-7390875,7390971-7391419	AT1G21110.1 CDS  gene_syn T22I11.6, T22I11_6  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21120.1); Has 2067 Blast hits to 2064 proteins in 410 species: Archae - 0; Bacteria - 560; Metazoa - 81; Fungi - 421; Plants - 923; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT1G21110.1p  transcript_id AT1G21110.1  protein_id AT1G21110.1p  transcript_id AT1G21110.1  
At1g21120	chr1:007395331	0.0	C/7395331-7395630,7395724-7396096,7396192-7396640	AT1G21120.1 CDS  gene_syn T22I11.5, T22I11_5  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21110.1); Has 2072 Blast hits to 2069 proteins in 418 species: Archae - 0; Bacteria - 580; Metazoa - 81; Fungi - 418; Plants - 916; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G21120.1p  transcript_id AT1G21120.1  protein_id AT1G21120.1p  transcript_id AT1G21120.1  
At1g21130	chr1:007399170	0.0	C/7399170-7399469,7399558-7399930,7400022-7400470	AT1G21130.1 CDS  gene_syn T22I11.4, T22I11_4  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21100.1); Has 2127 Blast hits to 2124 proteins in 428 species: Archae - 0; Bacteria - 609; Metazoa - 82; Fungi - 434; Plants - 916; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).  protein_id AT1G21130.1p  transcript_id AT1G21130.1  protein_id AT1G21130.1p  transcript_id AT1G21130.1  
At1g21130	chr1:007399489	0.0	C/7399489-7399930,7400022-7400470	AT1G21130.2 CDS  gene_syn T22I11.4, T22I11_4  go_function methyltransferase activity|GO:0008168||IEA  go_function O-methyltransferase activity|GO:0008171||IEA  go_function protein dimerization activity|GO:0046983||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase, putative  note O-methyltransferase, putative; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase, putative (TAIR:AT1G21120.1); Has 1099 Blast hits to 1098 proteins in 213 species: Archae - 0; Bacteria - 180; Metazoa - 8; Fungi - 18; Plants - 877; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G21130.2p  transcript_id AT1G21130.2  protein_id AT1G21130.2p  transcript_id AT1G21130.2  
At1g21140	chr1:007404464	0.0	W/7404464-7405066	AT1G21140.1 CDS  gene_syn T22I11.3, T22I11_3  go_process biological_process|GO:0008150||ND  product nodulin, putative  note nodulin, putative; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: nodulin, putative (TAIR:AT3G43630.1); Has 1036 Blast hits to 1028 proteins in 341 species: Archae - 39; Bacteria - 627; Metazoa - 0; Fungi - 71; Plants - 99; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G21140.1p  transcript_id AT1G21140.1  protein_id AT1G21140.1p  transcript_id AT1G21140.1  
At1g21150	chr1:007406406	0.0	C/7406406-7407578	AT1G21150.1 CDS  gene_syn T22I11.17, T22I11_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product mitochondrial transcription termination factor family protein / mTERF family protein  note mitochondrial transcription termination factor family protein / mTERF family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor family protein / mTERF family protein (TAIR:AT5G07900.1); Has 452 Blast hits to 369 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 439; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G21150.1p  transcript_id AT1G21150.1  protein_id AT1G21150.1p  transcript_id AT1G21150.1  
At1g21160	chr1:007408121	0.0	C/7408121-7408186,7408292-7408408,7408489-7408626,7408711-7409268,7409380-7409439,7409564-7409629,7409738-7409848,7409929-7410019,7410116-7410216,7410311-7410418,7410501-7411048,7411141-7412455	AT1G21160.1 CDS  gene_syn T22I11.2, T22I11_2  go_function GTPase activity|GO:0003924||IEA  go_function GTP binding|GO:0005525||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function translation initiation factor activity|GO:0003743||ISS  product GTP binding / GTPase/ translation initiation factor  note GTP binding / GTPase/ translation initiation factor; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (TAIR:AT1G76810.1); Has 71507 Blast hits to 54819 proteins in 2426 species: Archae - 693; Bacteria - 21506; Metazoa - 19210; Fungi - 4963; Plants - 1848; Viruses - 213; Other Eukaryotes - 23074 (source: NCBI BLink).  protein_id AT1G21160.1p  transcript_id AT1G21160.1  protein_id AT1G21160.1p  transcript_id AT1G21160.1  
At1g21170	chr1:007413050	0.0	W/7413050-7413469,7413798-7413955,7414070-7414155,7414271-7414465,7414549-7414676,7414762-7414920,7415054-7415158,7415419-7415493,7415735-7415872,7415969-7416154,7416243-7416371,7416507-7416633,7416714-7416924,7417310-7417425,7417543-7417771,7418030-7418123,7418266-7418343,7418456-7418512,7418624-7418773,7418870-7419085,7419196-7419411	AT1G21170.1 CDS  gene_syn SEC5B  gene SEC5B  go_component cytosol|GO:0005829|18433157|IDA  go_process pollen germination|GO:0009846|18492870|IGI  go_process pollen tube growth|GO:0009860|18492870|IGI  go_function molecular_function|GO:0003674||ND  product SEC5B  note SEC5B; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: cytosol; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (TAIR:AT1G76850.1); Has 651 Blast hits to 643 proteins in 149 species: Archae - 0; Bacteria - 21; Metazoa - 353; Fungi - 111; Plants - 82; Viruses - 8; Other Eukaryotes - 76 (source: NCBI BLink).  protein_id AT1G21170.1p  transcript_id AT1G21170.1  protein_id AT1G21170.1p  transcript_id AT1G21170.1  
At1g21190	chr1:007419989	0.0	C/7419989-7420069,7420392-7420487,7420740-7420856	AT1G21190.1 CDS  gene_syn F16F4.12, F16F4_12  go_component nucleus|GO:0005634||ISS  go_component small nucleolar ribonucleoprotein complex|GO:0005732||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative  note small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (TAIR:AT1G76860.1); Has 924 Blast hits to 924 proteins in 209 species: Archae - 244; Bacteria - 0; Metazoa - 275; Fungi - 141; Plants - 102; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT1G21190.1p  transcript_id AT1G21190.1  protein_id AT1G21190.1p  transcript_id AT1G21190.1  
At1g21200	chr1:007421483	0.0	W/7421483-7422814	AT1G21200.1 CDS  gene_syn F16F4.11, F16F4_11  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1); Has 251 Blast hits to 233 proteins in 48 species: Archae - 2; Bacteria - 24; Metazoa - 66; Fungi - 2; Plants - 75; Viruses - 9; Other Eukaryotes - 73 (source: NCBI BLink).  protein_id AT1G21200.1p  transcript_id AT1G21200.1  protein_id AT1G21200.1p  transcript_id AT1G21200.1  
At1g21202	chr1:007423518	0.0	W/7423518-7423611	AT1G21202.1 miRNA  gene_syn MICRORNA781A, MIR781A  gene MIR781A  function Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UUAGAGUUUUCUGGAUACUUA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR781A (MICRORNA781A); miRNA  transcript_id AT1G21202.1  
At1g21210	chr1:007424653	0.0	W/7424653-7425487,7425585-7425770,7425846-7427041	AT1G21210.1 CDS  gene_syn F16F4.10, F16F4_10, WAK4, wall associated kinase 4  gene WAK4  function cell wall-associated ser/thr kinase involved in cell elongation and lateral root development  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|10380805|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process unidimensional cell growth|GO:0009826|11402163|IMP  go_process lateral root development|GO:0048527|11402163|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  product WAK4 (wall associated kinase 4); ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase  note wall associated kinase 4 (WAK4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation, unidimensional cell growth, lateral root development; LOCATED IN: plasma membrane; EXPRESSED IN: root, trichome; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: WAK2; ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G21270.1); Has 95547 Blast hits to 88449 proteins in 3309 species: Archae - 60; Bacteria - 7790; Metazoa - 47405; Fungi - 6411; Plants - 18825; Viruses - 397; Other Eukaryotes - 14659 (source: NCBI BLink).  protein_id AT1G21210.1p  transcript_id AT1G21210.1  protein_id AT1G21210.1p  transcript_id AT1G21210.1  
At1g21220	chr1:007428112	0.0	C/7428112-7428930	AT1G21220.1 mRNA_TE_gene  pseudo  gene_syn F16F4.18, F16F4_18  note Transposable element gene, copia-like retrotransposon family, has a 3.9e-26 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g21230	chr1:007429980	0.0	W/7429980-7430814,7430895-7431074,7431160-7432346	AT1G21230.1 CDS  gene_syn F16F4.9, F16F4_9, WAK5, WALL ASSOCIATED KINASE 5  gene WAK5  function encodes a wall-associated kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|10380805|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function kinase activity|GO:0016301||ISS  product WAK5 (WALL ASSOCIATED KINASE 5); kinase/ protein serine/threonine kinase  note WALL ASSOCIATED KINASE 5 (WAK5); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: WAK1 (CELL WALL-ASSOCIATED KINASE); kinase (TAIR:AT1G21250.1); Has 102231 Blast hits to 89629 proteins in 3285 species: Archae - 60; Bacteria - 7789; Metazoa - 53821; Fungi - 6393; Plants - 18893; Viruses - 398; Other Eukaryotes - 14877 (source: NCBI BLink).  protein_id AT1G21230.1p  transcript_id AT1G21230.1  protein_id AT1G21230.1p  transcript_id AT1G21230.1  
At1g21240	chr1:007434303	0.0	W/7434303-7435179,7435281-7435439,7435513-7436702	AT1G21240.1 CDS  gene_syn F16F4.8, F16F4_8, WAK3, wall associated kinase 3  gene WAK3  function encodes a wall-associated kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component plasma membrane|GO:0005886|10380805|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function kinase activity|GO:0016301||ISS  product WAK3 (wall associated kinase 3); kinase/ protein serine/threonine kinase  note wall associated kinase 3 (WAK3); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: WAK1 (CELL WALL-ASSOCIATED KINASE); kinase (TAIR:AT1G21250.1); Has 102592 Blast hits to 89688 proteins in 3362 species: Archae - 64; Bacteria - 7769; Metazoa - 54419; Fungi - 6353; Plants - 18768; Viruses - 408; Other Eukaryotes - 14811 (source: NCBI BLink).  protein_id AT1G21240.1p  transcript_id AT1G21240.1  protein_id AT1G21240.1p  transcript_id AT1G21240.1  
At1g21245	chr1:007436842	0.0	W/7436842-7437342	AT1G21245.1 CDS  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  product wall-associated kinase-related  note wall-associated kinase-related; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: WAK3 (wall associated kinase 3); kinase/ protein serine/threonine kinase (TAIR:AT1G21240.1); Has 10503 Blast hits to 10363 proteins in 297 species: Archae - 0; Bacteria - 191; Metazoa - 223; Fungi - 0; Plants - 10024; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G21245.1p  transcript_id AT1G21245.1  protein_id AT1G21245.1p  transcript_id AT1G21245.1  
At1g21250	chr1:007439512	0.0	W/7439512-7440355,7440441-7440614,7440703-7441892	AT1G21250.1 CDS  gene_syn CELL WALL-ASSOCIATED KINASE, F16F4.6, F16F4_6, PRO25, SERINE THREONINE KINASE, WAK1  gene WAK1  function cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component.  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|10380805|IDA  go_component plasma membrane|GO:0005886|11554472|ISS  go_component plant-type cell wall|GO:0009505|8702686|IDA  go_process cell surface receptor linked signal transduction|GO:0007166|11335717|IPI  go_process response to salicylic acid stimulus|GO:0009751|16307367|IEP  go_function kinase activity|GO:0016301|8702686|ISS  go_function kinase activity|GO:0016301||ISS  product WAK1 (CELL WALL-ASSOCIATED KINASE); kinase  note CELL WALL-ASSOCIATED KINASE (WAK1); FUNCTIONS IN: kinase activity; INVOLVED IN: cell surface receptor linked signal transduction, response to salicylic acid stimulus; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: WAK3 (wall associated kinase 3); kinase/ protein serine/threonine kinase (TAIR:AT1G21240.1); Has 97003 Blast hits to 87938 proteins in 3273 species: Archae - 58; Bacteria - 7636; Metazoa - 49432; Fungi - 6249; Plants - 18663; Viruses - 405; Other Eukaryotes - 14560 (source: NCBI BLink).  protein_id AT1G21250.1p  transcript_id AT1G21250.1  protein_id AT1G21250.1p  transcript_id AT1G21250.1  
At1g21260	chr1:007442218	0.0	C/7442218-7442979	AT1G21260.1 mRNA_TE_gene  pseudo  gene_syn F16F4.17  note Transposable element gene, copia-like retrotransposon family, has a 2.4e-23 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g21270	chr1:007444997	0.0	W/7444997-7445828,7445903-7446073,7446150-7447345	AT1G21270.1 CDS  gene_syn F16F4.5, F16F4_5, WAK2  gene WAK2  function cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component plasma membrane|GO:0005886|10380805|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process oligosaccharide metabolic process|GO:0009311|16623892|IMP  go_process response to salicylic acid stimulus|GO:0009751|10380805|IDA  go_process unidimensional cell growth|GO:0009826|16623892|IMP  go_process cellular water homeostasis|GO:0009992|16623892|IDA  go_process cellular water homeostasis|GO:0009992|16623892|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  product WAK2; ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase  note WAK2; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: cellular water homeostasis, protein amino acid phosphorylation, oligosaccharide metabolic process, unidimensional cell growth, response to salicylic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), EGF-like region, conserved site (InterPro:IPR013032), Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation conserved site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: WAK5 (WALL ASSOCIATED KINASE 5); kinase/ protein serine/threonine kinase (TAIR:AT1G21230.1); Has 105918 Blast hits to 90525 proteins in 3329 species: Archae - 64; Bacteria - 7752; Metazoa - 57550; Fungi - 6394; Plants - 18825; Viruses - 406; Other Eukaryotes - 14927 (source: NCBI BLink).  protein_id AT1G21270.1p  transcript_id AT1G21270.1  protein_id AT1G21270.1p  transcript_id AT1G21270.1  
At1g21280	chr1:007447690	0.0	C/7447690-7448403	AT1G21280.1 CDS  gene_syn F16F4.14, F16F4_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 594 Blast hits to 592 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 590; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21280.1p  transcript_id AT1G21280.1  protein_id AT1G21280.1p  transcript_id AT1G21280.1  
At1g21281	chr1:007448552	0.0	W/7448552-7448683	AT1G21281.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G21281.1p  transcript_id AT1G21281.1  protein_id AT1G21281.1p  transcript_id AT1G21281.1  
At1g21286	chr1:007449472	0.0	W/7449472-7449664	AT1G21286.1 pseudogenic_transcript  pseudo  function Pseudogene of AT1G21245; wall-associated kinase-related protein  
At1g21290	chr1:007449964	0.0	C/7449964-7450695	AT1G21290.1 mRNA_TE_gene  pseudo  gene_syn F16F4.15, F16F4_15  note Transposable element gene, copia-like retrotransposon family, has a 3.7e-25 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g21300	chr1:007451150	0.0	C/7451150-7451707	AT1G21300.1 mRNA_TE_gene  pseudo  gene_syn F16F4.16, F16F4_16  note Transposable element gene, copia-like retrotransposon family, has a 3.9e-15 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g21310	chr1:007453693	0.0	C/7453693-7454988	AT1G21310.1 CDS  gene_syn ATEXT3, EXTENSIN 3, F16F4.4, F16F4_4, ROOT-SHOOT-HYPOCOTYL DEFECTIVE, RSH  gene ATEXT3  function Encodes extensin 3.  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199|12034904|IDA  product ATEXT3 (EXTENSIN 3); structural constituent of cell wall  note EXTENSIN 3 (ATEXT3); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 130013 Blast hits to 22783 proteins in 972 species: Archae - 256; Bacteria - 14806; Metazoa - 53857; Fungi - 20293; Plants - 20206; Viruses - 4126; Other Eukaryotes - 16469 (source: NCBI BLink).  protein_id AT1G21310.1p  transcript_id AT1G21310.1  protein_id AT1G21310.1p  transcript_id AT1G21310.1  
At1g21320	chr1:007462834	0.0	C/7462834-7462934,7463141-7463222,7463320-7463381,7463467-7463752,7463837-7463970,7464600-7465200	AT1G21320.1 CDS  gene_syn F16F4.3, F16F4_3  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1); Has 556 Blast hits to 556 proteins in 110 species: Archae - 0; Bacteria - 10; Metazoa - 279; Fungi - 97; Plants - 122; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G21320.1p  transcript_id AT1G21320.1  protein_id AT1G21320.1p  transcript_id AT1G21320.1  
At1g21320	chr1:007462834	0.0	C/7462834-7462934,7463141-7463222,7463320-7463381,7463467-7463752,7463837-7463970,7466068-7466164	AT1G21320.2 CDS  gene_syn F16F4.3, F16F4_3  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding / nucleotide binding  note nucleic acid binding / nucleotide binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G76940.1).  protein_id AT1G21320.2p  transcript_id AT1G21320.2  protein_id AT1G21320.2p  transcript_id AT1G21320.2  
At1g21323	chr1:007466694	0.0	W/7466694-7466834,7466918-7467053,7467250-7467359	AT1G21323.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21323.1p  transcript_id AT1G21323.1  protein_id AT1G21323.1p  transcript_id AT1G21323.1  
At1g21326	chr1:007469002	0.0	C/7469002-7469721	AT1G21326.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT1G21320.1); Has 213 Blast hits to 213 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 20; Plants - 66; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G21326.1p  transcript_id AT1G21326.1  protein_id AT1G21326.1p  transcript_id AT1G21326.1  
At1g21327	chr1:007471947	0.0	C/7471947-7472210	AT1G21327.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G21327.1p  transcript_id AT1G21327.1  protein_id AT1G21327.1p  transcript_id AT1G21327.1  
At1g21330	chr1:007474703	0.0	W/7474703-7475683	AT1G21330.1 mRNA_TE_gene  pseudo  gene_syn F24J8.25, F24J8_25  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40680.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g21340	chr1:007476087	0.0	W/7476087-7476869	AT1G21340.1 CDS  gene_syn F24J8.23, F24J8_23  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT3G52440.1); Has 618 Blast hits to 614 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G21340.1p  transcript_id AT1G21340.1  protein_id AT1G21340.1p  transcript_id AT1G21340.1  
At1g21350	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478442-7478519	AT1G21350.1 CDS  gene_syn F24J8.1, F24J8_1  go_component chloroplast|GO:0009507|18431481|IDA  go_function antioxidant activity|GO:0016209||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product antioxidant/ oxidoreductase  note antioxidant/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); Has 2328 Blast hits to 2328 proteins in 231 species: Archae - 18; Bacteria - 470; Metazoa - 4; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1810 (source: NCBI BLink).  protein_id AT1G21350.1p  transcript_id AT1G21350.1  protein_id AT1G21350.1p  transcript_id AT1G21350.1  
At1g21350	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478442-7478522,7478617-7478682,7478779-7479012	AT1G21350.3 CDS  gene_syn F24J8.1, F24J8_1  go_component chloroplast|GO:0009507|18431481|IDA  go_process cell redox homeostasis|GO:0045454||IEA  go_function antioxidant activity|GO:0016209||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product antioxidant/ oxidoreductase  note antioxidant/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); Has 2431 Blast hits to 2431 proteins in 245 species: Archae - 18; Bacteria - 506; Metazoa - 4; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1877 (source: NCBI BLink).  protein_id AT1G21350.3p  transcript_id AT1G21350.3  protein_id AT1G21350.3p  transcript_id AT1G21350.3  
At1g21350	chr1:007477376	0.0	C/7477376-7477418,7477498-7477563,7477638-7477720,7478008-7478070,7478164-7478232,7478315-7478368,7478617-7478682,7478779-7479012	AT1G21350.2 CDS  gene_syn F24J8.1, F24J8_1  go_component chloroplast|GO:0009507|18431481|IDA  go_function antioxidant activity|GO:0016209||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product antioxidant/ oxidoreductase  note antioxidant/ oxidoreductase; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like fold (InterPro:IPR012336); Has 2185 Blast hits to 2185 proteins in 230 species: Archae - 18; Bacteria - 464; Metazoa - 4; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 1673 (source: NCBI BLink).  protein_id AT1G21350.2p  transcript_id AT1G21350.2  protein_id AT1G21350.2p  transcript_id AT1G21350.2  
At1g21360	chr1:007481365	0.0	W/7481365-7481533,7481680-7481735,7482135-7482265,7482599-7482734,7482912-7483055,7483202-7483237	AT1G21360.1 CDS  gene_syn F24J8.2, F24J8_2, GLTP2, glycolipid transfer protein 2  gene GLTP2  go_component cytoplasm|GO:0005737||IEA  go_process glycolipid transport|GO:0046836||IEA  go_function glycolipid transporter activity|GO:0017089||IEA  go_function glycolipid binding|GO:0051861||IEA  product GLTP2 (glycolipid transfer protein 2); glycolipid binding / glycolipid transporter  note glycolipid transfer protein 2 (GLTP2); FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: glycolipid transfer protein-related (TAIR:AT3G21260.3); Has 32 Blast hits to 26 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21360.1p  transcript_id AT1G21360.1  protein_id AT1G21360.1p  transcript_id AT1G21360.1  
At1g21370	chr1:007484250	0.0	W/7484250-7484838,7484920-7485041,7485134-7485451	AT1G21370.1 CDS  gene_syn F24J8.26, F24J8_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 97 Blast hits to 97 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 67; Plants - 22; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G21370.1p  transcript_id AT1G21370.1  protein_id AT1G21370.1p  transcript_id AT1G21370.1  
At1g21370	chr1:007484250	0.0	W/7484250-7484838,7484920-7485041,7485134-7485451	AT1G21370.2 CDS  gene_syn F24J8.26, F24J8_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 97 Blast hits to 97 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 67; Plants - 22; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G21370.2p  transcript_id AT1G21370.2  protein_id AT1G21370.2p  transcript_id AT1G21370.2  
At1g21380	chr1:007485806	0.0	C/7485806-7486415,7486496-7486684,7486781-7486866,7486949-7487030,7487126-7487277,7487360-7487473,7487563-7487661,7487744-7487822,7487923-7488032	AT1G21380.1 CDS  gene_syn F24J8.3, F24J8_3  go_component intracellular|GO:0005622||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_component Golgi stack|GO:0005795||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_process intra-Golgi vesicle-mediated transport|GO:0006891||ISS  go_function protein transporter activity|GO:0008565||ISS  product VHS domain-containing protein / GAT domain-containing protein  note VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: VHS domain-containing protein / GAT domain-containing protein (TAIR:AT1G76970.1); Has 1297 Blast hits to 1295 proteins in 140 species: Archae - 0; Bacteria - 6; Metazoa - 767; Fungi - 311; Plants - 152; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G21380.1p  transcript_id AT1G21380.1  protein_id AT1G21380.1p  transcript_id AT1G21380.1  
At1g21390	chr1:007489385	0.0	C/7489385-7489481,7489905-7490554	AT1G21390.1 CDS  gene_syn F24J8.30, F24J8_30, emb2170, embryo defective 2170  gene emb2170  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb2170 (embryo defective 2170)  note embryo defective 2170 (emb2170); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76980.2); Has 24 Blast hits to 24 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G21390.1p  transcript_id AT1G21390.1  protein_id AT1G21390.1p  transcript_id AT1G21390.1  
At1g21395	chr1:007492011	0.0	W/7492011-7492232	AT1G21395.1 CDS  go_component membrane|GO:0016020|11152613|ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26865.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21395.1p  transcript_id AT1G21395.1  protein_id AT1G21395.1p  transcript_id AT1G21395.1  
At1g21400	chr1:007493492	0.0	W/7493492-7493725,7494444-7494581,7494663-7494845,7494923-7495080,7495167-7495266,7495366-7495477,7495572-7495711,7495801-7495986,7496073-7496240	AT1G21400.1 CDS  gene_syn F24J8.4, F24J8_4  go_process metabolic process|GO:0008152||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||IEA  go_process metabolic process|GO:0008152||ISS  go_function 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|GO:0003863||ISS  product 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative  note 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative (TAIR:AT5G09300.1); Has 6104 Blast hits to 6100 proteins in 1082 species: Archae - 46; Bacteria - 3071; Metazoa - 464; Fungi - 157; Plants - 112; Viruses - 0; Other Eukaryotes - 2254 (source: NCBI BLink).  protein_id AT1G21400.1p  transcript_id AT1G21400.1  protein_id AT1G21400.1p  transcript_id AT1G21400.1  
At1g21410	chr1:007497479	0.0	W/7497479-7497696,7498245-7498593,7498698-7498839,7499013-7499386	AT1G21410.1 CDS  gene_syn F24J8.5, F24J8_5, SKP2A  gene SKP2A  function AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes.  go_component SCF ubiquitin ligase complex|GO:0019005|12468727|IPI  go_process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|GO:0031146|12468727|IPI  product SKP2A  note SKP2A; INVOLVED IN: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: SKP2B; ubiquitin-protein ligase (TAIR:AT1G77000.1); Has 6378 Blast hits to 2794 proteins in 176 species: Archae - 0; Bacteria - 326; Metazoa - 3115; Fungi - 704; Plants - 1573; Viruses - 9; Other Eukaryotes - 651 (source: NCBI BLink).  protein_id AT1G21410.1p  transcript_id AT1G21410.1  protein_id AT1G21410.1p  transcript_id AT1G21410.1  
At1g21420	chr1:007499733	0.0	C/7499733-7499804	AT1G21420.1 tRNA  gene_syn 52094.TRNA-GLN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: TTG)  transcript_id AT1G21420.1  
At1g21430	chr1:007500845	0.0	W/7500845-7501462,7501549-7501905,7501986-7502186	AT1G21430.1 CDS  gene_syn F24J8.6, F24J8_6, YUC11  gene YUC11  go_component membrane|GO:0016020|17432890|IDA  go_function monooxygenase activity|GO:0004497||IEA  go_function flavin-containing monooxygenase activity|GO:0004499||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_process anatomical structure morphogenesis|GO:0009653|17704214|IGI  go_function monooxygenase activity|GO:0004497||ISS  product YUC11; FAD binding / NADP or NADPH binding / flavin-containing monooxygenase/ monooxygenase/ oxidoreductase  note YUC11; FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, monooxygenase activity, flavin-containing monooxygenase activity; INVOLVED IN: anatomical structure morphogenesis; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: YUC10; FAD binding / monooxygenase/ oxidoreductase (TAIR:AT1G48910.1); Has 6214 Blast hits to 6207 proteins in 756 species: Archae - 13; Bacteria - 2911; Metazoa - 658; Fungi - 793; Plants - 327; Viruses - 0; Other Eukaryotes - 1512 (source: NCBI BLink).  protein_id AT1G21430.1p  transcript_id AT1G21430.1  protein_id AT1G21430.1p  transcript_id AT1G21430.1  
At1g21440	chr1:007502325	0.0	C/7502325-7502690,7502781-7502936,7503045-7503064,7503174-7503198,7503385-7503467,7503663-7503736,7503817-7504103	AT1G21440.1 CDS  gene_syn F24J8.7, F24J8_7  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function isocitrate lyase activity|GO:0004451||ISS  product mutase family protein  note mutase family protein; FUNCTIONS IN: isocitrate lyase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase and phosphorylmutase, conserved site (InterPro:IPR018523), Isocitrate lyase and phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: mutase family protein (TAIR:AT1G77060.1); Has 6447 Blast hits to 6447 proteins in 860 species: Archae - 75; Bacteria - 2907; Metazoa - 29; Fungi - 322; Plants - 109; Viruses - 0; Other Eukaryotes - 3005 (source: NCBI BLink).  protein_id AT1G21440.1p  transcript_id AT1G21440.1  protein_id AT1G21440.1p  transcript_id AT1G21440.1  
At1g21450	chr1:007509721	0.0	W/7509721-7511502	AT1G21450.1 CDS  gene_syn F24J8.8, F24J8_8, SCARECROW-LIKE 1, SCL1  gene SCL1  function Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family.  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product SCL1 (SCARECROW-LIKE 1); transcription factor  note SCARECROW-LIKE 1 (SCL1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GRAS transcription factor (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: PAT1 (phytochrome a signal transduction 1); signal transducer/ transcription factor (TAIR:AT5G48150.2); Has 1379 Blast hits to 1357 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1374; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G21450.1p  transcript_id AT1G21450.1  protein_id AT1G21450.1p  transcript_id AT1G21450.1  
At1g21460	chr1:007512030	0.0	C/7512030-7512206,7512294-7512413,7512507-7512786,7512883-7512978,7513094-7513130,7513248-7513281	AT1G21460.1 CDS  gene_syn F24J8.9, F24J8_9  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  product nodulin MtN3 family protein  note nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MtN3 and saliva related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), MtN3 and saliva related transmembrane protein (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: nodulin MtN3 family protein (TAIR:AT4G10850.1); Has 572 Blast hits to 531 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).  protein_id AT1G21460.1p  transcript_id AT1G21460.1  protein_id AT1G21460.1p  transcript_id AT1G21460.1  
At1g21470	chr1:007516709	0.0	C/7516709-7516855,7516970-7517179	AT1G21470.1 CDS  gene_syn F24J8.28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: CLPC1; ATP binding / ATP-dependent peptidase/ ATPase (TAIR:AT5G50920.1).  protein_id AT1G21470.1p  transcript_id AT1G21470.1  protein_id AT1G21470.1p  transcript_id AT1G21470.1  
At1g21480	chr1:007519116	0.0	C/7519116-7519345,7519446-7519581,7519676-7519819,7519955-7520173,7520431-7520500,7520600-7520664,7520772-7520918,7521049-7521426	AT1G21480.1 CDS  gene_syn F24J8.10, F24J8_10  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: F8H (FRA8 HOMOLOG); catalytic (TAIR:AT5G22940.1); Has 756 Blast hits to 751 proteins in 84 species: Archae - 0; Bacteria - 6; Metazoa - 221; Fungi - 4; Plants - 446; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G21480.1p  transcript_id AT1G21480.1  protein_id AT1G21480.1p  transcript_id AT1G21480.1  
At1g21480	chr1:007519372	0.0	C/7519372-7519581,7519676-7519819,7519955-7520173,7520431-7520500,7520600-7520664,7520772-7520918,7521049-7521426	AT1G21480.2 CDS  gene_syn F24J8.10, F24J8_10  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product exostosin family protein  note exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: F8H (FRA8 HOMOLOG); catalytic (TAIR:AT5G22940.1); Has 666 Blast hits to 663 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 162; Fungi - 4; Plants - 431; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G21480.2p  transcript_id AT1G21480.2  protein_id AT1G21480.2p  transcript_id AT1G21480.2  
At1g21475	chr1:007524086	0.0	C/7524086-7524631	AT1G21475.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07350.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21475.1p  transcript_id AT1G21475.1  protein_id AT1G21475.1p  transcript_id AT1G21475.1  
At1g21490	chr1:007527079	0.0	C/7527079-7528202	AT1G21490.1 pseudogenic_transcript  pseudo  gene_syn F24J8.27  note pseudogene, hypothetical protein  
At1g21500	chr1:007530047	0.0	C/7530047-7530302,7530830-7530954	AT1G21500.1 CDS  gene_syn F24J8.11, F24J8_11  go_component 1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex|GO:0005943|11719511|ISS  product unknown protein  note unknown protein; LOCATED IN: 1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21500.1p  transcript_id AT1G21500.1  protein_id AT1G21500.1p  transcript_id AT1G21500.1  
At1g21510	chr1:007531534	0.0	C/7531534-7532505	AT1G21510.1 CDS  gene_syn F24J8.12, F24J8_12  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; Has 409 Blast hits to 274 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 304; Fungi - 35; Plants - 4; Viruses - 5; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G21510.1p  transcript_id AT1G21510.1  protein_id AT1G21510.1p  transcript_id AT1G21510.1  
At1g21520	chr1:007534533	0.0	C/7534533-7534733	AT1G21520.1 CDS  gene_syn F24J8.16, F24J8_16  go_component endoplasmic reticulum|GO:0005783|18614705|IMP  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_process response to salt stress|GO:0009651|11351099|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: endoplasmic reticulum; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21520.1p  transcript_id AT1G21520.1  protein_id AT1G21520.1p  transcript_id AT1G21520.1  
At1g21525	chr1:007537087	0.0	C/7537087-7537649	AT1G21525.1 pseudogenic_transcript  pseudo  function pseudogene of unknown protein  note expressed protein  
At1g21528	chr1:007542830	0.0	C/7542830-7543039	AT1G21528.1 CDS  product unknown protein  note unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21528.1p  transcript_id AT1G21528.1  protein_id AT1G21528.1p  transcript_id AT1G21528.1  
At1g21530	chr1:007545151	0.0	C/7545151-7545900,7546037-7546936	AT1G21530.2 CDS  gene_syn F24J8.13, F24J8_13  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-binding protein, putative  note AMP-binding protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-binding protein, putative (TAIR:AT1G21540.1); Has 50537 Blast hits to 46860 proteins in 2232 species: Archae - 556; Bacteria - 27515; Metazoa - 2901; Fungi - 2357; Plants - 1239; Viruses - 1; Other Eukaryotes - 15968 (source: NCBI BLink).  protein_id AT1G21530.2p  transcript_id AT1G21530.2  protein_id AT1G21530.2p  transcript_id AT1G21530.2  
At1g21530	chr1:007545151	0.0	C/7545151-7545900,7546043-7546936	AT1G21530.1 CDS  gene_syn F24J8.13, F24J8_13  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-binding protein, putative  note AMP-binding protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-binding protein, putative (TAIR:AT1G21540.1); Has 50597 Blast hits to 46775 proteins in 2232 species: Archae - 558; Bacteria - 27529; Metazoa - 2934; Fungi - 2384; Plants - 1276; Viruses - 1; Other Eukaryotes - 15915 (source: NCBI BLink).  protein_id AT1G21530.1p  transcript_id AT1G21530.1  protein_id AT1G21530.1p  transcript_id AT1G21530.1  
At1g21540	chr1:007548758	0.0	C/7548758-7549501,7549613-7550521	AT1G21540.1 CDS  gene_syn F24J8.14, F24J8_14  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  product AMP-binding protein, putative  note AMP-binding protein, putative; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-binding protein, putative (TAIR:AT1G21530.2); Has 50553 Blast hits to 47005 proteins in 2235 species: Archae - 550; Bacteria - 27715; Metazoa - 2872; Fungi - 2366; Plants - 1252; Viruses - 1; Other Eukaryotes - 15797 (source: NCBI BLink).  protein_id AT1G21540.1p  transcript_id AT1G21540.1  protein_id AT1G21540.1p  transcript_id AT1G21540.1  
At1g21550	chr1:007553317	0.0	C/7553317-7553784	AT1G21550.1 CDS  gene_syn F24J8.15, F24J8_15  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding protein, putative  note calcium-binding protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT4G20780.1); Has 6890 Blast hits to 6643 proteins in 978 species: Archae - 0; Bacteria - 10; Metazoa - 2533; Fungi - 1210; Plants - 1972; Viruses - 0; Other Eukaryotes - 1165 (source: NCBI BLink).  protein_id AT1G21550.1p  transcript_id AT1G21550.1  protein_id AT1G21550.1p  transcript_id AT1G21550.1  
At1g21560	chr1:007555430	0.0	W/7555430-7556032,7556132-7556348,7556540-7556628,7556721-7556789	AT1G21560.1 CDS  gene_syn F24J8.19, F24J8_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1); Has 40 Blast hits to 40 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21560.1p  transcript_id AT1G21560.1  protein_id AT1G21560.1p  transcript_id AT1G21560.1  
At1g21570	chr1:007557822	0.0	C/7557822-7558211,7558475-7558578,7558644-7558686,7558761-7559031,7559115-7559205,7559439-7559513,7559649-7559745,7559850-7560000,7560093-7560283	AT1G21570.1 CDS  gene_syn F24J8.21, F24J8_21  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (TAIR:AT1G30460.2); Has 862 Blast hits to 698 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 435; Fungi - 213; Plants - 136; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G21570.1p  transcript_id AT1G21570.1  protein_id AT1G21570.1p  transcript_id AT1G21570.1  
At1g21580	chr1:007560565	0.0	C/7560565-7565655	AT1G21580.1 CDS  gene_syn F24J8.17, F24J8_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 5883 Blast hits to 3865 proteins in 351 species: Archae - 2; Bacteria - 340; Metazoa - 2117; Fungi - 809; Plants - 1304; Viruses - 149; Other Eukaryotes - 1162 (source: NCBI BLink).  protein_id AT1G21580.1p  transcript_id AT1G21580.1  protein_id AT1G21580.1p  transcript_id AT1G21580.1  
At1g21590	chr1:007566613	0.0	C/7566613-7566858,7566963-7567112,7567203-7567350,7567441-7567520,7567601-7567764,7567844-7568092,7568197-7568931,7569032-7569281,7569360-7569457,7569544-7569694	AT1G21590.1 CDS  gene_syn F24J8.18, F24J8_18  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process response to stress|GO:0006950||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G77280.1); Has 84729 Blast hits to 83750 proteins in 2437 species: Archae - 54; Bacteria - 7550; Metazoa - 36860; Fungi - 6770; Plants - 18542; Viruses - 399; Other Eukaryotes - 14554 (source: NCBI BLink).  protein_id AT1G21590.1p  transcript_id AT1G21590.1  protein_id AT1G21590.1p  transcript_id AT1G21590.1  
At1g21600	chr1:007571514	0.0	C/7571514-7571630,7571742-7571831,7572122-7572241,7572476-7572580,7573128-7573196,7573297-7573782	AT1G21600.1 CDS  gene_syn F24J8.20, PLASTID TRANSCRIPTIONALLY ACTIVE6, PTAC6  gene PTAC6  function Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.  go_component nucleoid|GO:0009295|16326926|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process transcription from plastid promoter|GO:0042793|16326926|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|16326926|IMP  go_function molecular_function|GO:0003674||ND  product PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)  note PLASTID TRANSCRIPTIONALLY ACTIVE6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21600.1p  transcript_id AT1G21600.1  protein_id AT1G21600.1p  transcript_id AT1G21600.1  
At1g21600	chr1:007571514	0.0	C/7571514-7571630,7571742-7571831,7572122-7572241,7572476-7572580,7573128-7573196,7573297-7573782	AT1G21600.2 CDS  gene_syn F24J8.20, PLASTID TRANSCRIPTIONALLY ACTIVE6, PTAC6  gene PTAC6  function Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.  go_component nucleoid|GO:0009295|16326926|IDA  go_component plastid chromosome|GO:0009508|16326926|IDA  go_process transcription from plastid promoter|GO:0042793|16326926|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|16326926|IMP  go_function molecular_function|GO:0003674||ND  product PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6)  note PLASTID TRANSCRIPTIONALLY ACTIVE6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21600.2p  transcript_id AT1G21600.2  protein_id AT1G21600.2p  transcript_id AT1G21600.2  
At1g21610	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576949-7577035,7577221-7577346,7577628-7577756,7577849-7577896,7578052-7578162,7578251-7578643	AT1G21610.1 CDS  gene_syn F24J8.24  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611||ISS  go_function molecular_function|GO:0003674||ND  product wound-responsive family protein  note wound-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 468 Blast hits to 442 proteins in 110 species: Archae - 0; Bacteria - 20; Metazoa - 233; Fungi - 51; Plants - 45; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G21610.1p  transcript_id AT1G21610.1  protein_id AT1G21610.1p  transcript_id AT1G21610.1  
At1g21610	chr1:007574104	0.0	W/7574104-7574343,7574956-7575042,7575193-7575285,7575359-7575435,7575831-7575957,7576039-7576380,7576585-7576666,7576752-7576864,7576952-7577035,7577221-7577346,7577628-7577756,7577849-7577896,7578052-7578162,7578251-7578643	AT1G21610.2 CDS  gene_syn F24J8.24  go_component cellular_component|GO:0005575||ND  go_process response to wounding|GO:0009611||ISS  go_function molecular_function|GO:0003674||ND  product wound-responsive family protein  note wound-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1); Has 497 Blast hits to 466 proteins in 109 species: Archae - 0; Bacteria - 16; Metazoa - 258; Fungi - 58; Plants - 45; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G21610.2p  transcript_id AT1G21610.2  protein_id AT1G21610.2p  transcript_id AT1G21610.2  
At1g21620	chr1:007579129	0.0	W/7579129-7579336,7579380-7579691,7579765-7580171	AT1G21620.1 CDS  gene_syn APUM20, Arabidopsis Pumilio 20, F24J8.22  gene APUM20  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM20 (Arabidopsis Pumilio 20); RNA binding / binding  note Arabidopsis Pumilio 20 (APUM20); FUNCTIONS IN: RNA binding, binding; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM19 (Arabidopsis Pumilio 19); RNA binding / binding (TAIR:AT5G60180.1); Has 1461 Blast hits to 822 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 673; Fungi - 265; Plants - 308; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).  protein_id AT1G21620.1p  transcript_id AT1G21620.1  protein_id AT1G21620.1p  transcript_id AT1G21620.1  
At1g21630	chr1:007581457	0.0	W/7581457-7581603,7582231-7583461,7583756-7583974,7584053-7584276,7584695-7584769,7585019-7585090,7585176-7585274,7585378-7585449,7585521-7585635,7585908-7585976,7586163-7586463,7586629-7586740,7586876-7587796	AT1G21630.1 CDS  gene_syn F8K7.4, F8K7_4  go_component plasma membrane|GO:0005886|17317660|IDA  go_function calcium ion binding|GO:0005509||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G20760.1); Has 19247 Blast hits to 8018 proteins in 567 species: Archae - 61; Bacteria - 5974; Metazoa - 5911; Fungi - 2202; Plants - 397; Viruses - 84; Other Eukaryotes - 4618 (source: NCBI BLink).  protein_id AT1G21630.1p  transcript_id AT1G21630.1  protein_id AT1G21630.1p  transcript_id AT1G21630.1  
At1g21640	chr1:007588726	0.0	W/7588726-7588956,7589170-7591026,7591142-7591263,7591353-7591494,7591594-7591818,7591967-7592041,7592187-7592288,7592466-7592669	AT1G21640.1 CDS  gene_syn ATNADK2, F8K7.5, F8K7_5, NAD kinase 2, NADK2  gene NADK2  function Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_process pyridine nucleotide biosynthetic process|GO:0019363||ISS  go_function NAD+ kinase activity|GO:0003951|15247403|IDA  go_function NAD+ kinase activity|GO:0003951||ISS  go_function calmodulin binding|GO:0005516|15247403|IDA  product NADK2; NAD+ kinase/ calmodulin binding  note NADK2; FUNCTIONS IN: NAD+ kinase activity, calmodulin binding; INVOLVED IN: pyridine nucleotide biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-NAD kinase, PpnK-type, alpha/beta (InterPro:IPR017438), ATP-NAD kinase, PpnK-type (InterPro:IPR016064), ATP-NAD/AcoX kinase (InterPro:IPR002504), ATP-NAD kinase, PpnK-type, all-beta (InterPro:IPR017437); BEST Arabidopsis thaliana protein match is: NADK1 (NAD KINASE 1); NAD+ kinase/ NADH kinase/ calmodulin binding (TAIR:AT3G21070.2); Has 5795 Blast hits to 5703 proteins in 1524 species: Archae - 176; Bacteria - 2944; Metazoa - 255; Fungi - 281; Plants - 71; Viruses - 0; Other Eukaryotes - 2068 (source: NCBI BLink).  protein_id AT1G21640.1p  transcript_id AT1G21640.1  protein_id AT1G21640.1p  transcript_id AT1G21640.1  
At1g21650	chr1:007592891	0.0	C/7592891-7593055,7593139-7593213,7593294-7593417,7593517-7593685,7593811-7593880,7593988-7594042,7594149-7594228,7594566-7594646,7594757-7594874,7595055-7595110,7595438-7595727,7595838-7595901,7596034-7596129,7596312-7596425,7596515-7596593,7596887-7596972,7597076-7597171,7597283-7597375,7597460-7597543,7597701-7597791,7598248-7598363,7598467-7598532,7598705-7598792,7598856-7598920,7599008-7599073,7599165-7599256,7599433-7599553,7599665-7599729,7599872-7599941,7600030-7600164,7600405-7600590	AT1G21650.1 CDS  gene_syn F8K7.7, F8K7_7  go_component chloroplast|GO:0009507||IEA  go_component membrane|GO:0016020||IEA  go_process protein targeting|GO:0006605||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process protein import|GO:0017038||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process intracellular protein transport|GO:0006886||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / protein binding  note ATP binding / protein binding; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: intracellular protein transport, protein targeting, protein import; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA Wing and Scaffold (InterPro:IPR011116), SecA preprotein cross-linking region (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), SecA motor DEAD (InterPro:IPR014018), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: preprotein translocase secA subunit, putative (TAIR:AT4G01800.1); Has 15546 Blast hits to 9998 proteins in 1582 species: Archae - 0; Bacteria - 7300; Metazoa - 44; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 8147 (source: NCBI BLink).  protein_id AT1G21650.1p  transcript_id AT1G21650.1  protein_id AT1G21650.1p  transcript_id AT1G21650.1  
At1g21651	chr1:007601061	0.0	C/7601061-7601081,7601186-7601314,7601450-7601569,7601665-7601901,7601983-7602255,7602386-7602441,7602553-7604152	AT1G21651.1 CDS  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G24530.1); Has 24082 Blast hits to 13732 proteins in 513 species: Archae - 28; Bacteria - 3626; Metazoa - 10644; Fungi - 4830; Plants - 1984; Viruses - 3; Other Eukaryotes - 2967 (source: NCBI BLink).  protein_id AT1G21651.1p  transcript_id AT1G21651.1  protein_id AT1G21651.1p  transcript_id AT1G21651.1  
At1g21660	chr1:007605924	0.0	W/7605924-7606504,7606707-7606903,7606998-7607206,7607307-7607421,7607502-7607599,7607921-7607986,7608195-7608284,7608386-7608562,7608797-7608835	AT1G21660.1 CDS  gene_syn F8K7.8, F8K7_8  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: heat shock protein binding (TAIR:AT4G12770.1); Has 3095 Blast hits to 1073 proteins in 205 species: Archae - 0; Bacteria - 412; Metazoa - 629; Fungi - 312; Plants - 132; Viruses - 8; Other Eukaryotes - 1602 (source: NCBI BLink).  protein_id AT1G21660.1p  transcript_id AT1G21660.1  protein_id AT1G21660.1p  transcript_id AT1G21660.1  
At1g21670	chr1:007610409	0.0	W/7610409-7612520	AT1G21670.1 CDS  gene_syn F8K7.9, F8K7_9  go_component cell wall|GO:0005618|15593128|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  product unknown protein  note INVOLVED IN: proteolysis; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Peptidase S9B, dipeptidylpeptidase IV N-terminal (InterPro:IPR002469), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21680.1); Has 6126 Blast hits to 3685 proteins in 788 species: Archae - 47; Bacteria - 3362; Metazoa - 27; Fungi - 47; Plants - 58; Viruses - 0; Other Eukaryotes - 2585 (source: NCBI BLink).  protein_id AT1G21670.1p  transcript_id AT1G21670.1  protein_id AT1G21670.1p  transcript_id AT1G21670.1  
At1g21680	chr1:007613028	0.0	W/7613028-7615148	AT1G21680.1 CDS  gene_syn F8K7.10, F8K7_10  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21670.1); Has 6869 Blast hits to 3873 proteins in 790 species: Archae - 41; Bacteria - 3697; Metazoa - 41; Fungi - 39; Plants - 64; Viruses - 0; Other Eukaryotes - 2987 (source: NCBI BLink).  protein_id AT1G21680.1p  transcript_id AT1G21680.1  protein_id AT1G21680.1p  transcript_id AT1G21680.1  
At1g21690	chr1:007615675	0.0	W/7615675-7615718,7615805-7615847,7616028-7616107,7616604-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618270-7618362	AT1G21690.2 CDS  gene_syn F8K7.11, F8K7_11, emb1968, embryo defective 1968  gene emb1968  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA clamp loader activity|GO:0003689||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component DNA replication factor C complex|GO:0005663||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATPase activity|GO:0016887||ISS  product emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding  note embryo defective 1968 (emb1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: DNA replication factor C complex, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: replication factor C 40 kDa, putative (TAIR:AT1G63160.1); Has 10614 Blast hits to 10587 proteins in 1559 species: Archae - 417; Bacteria - 4328; Metazoa - 613; Fungi - 579; Plants - 189; Viruses - 64; Other Eukaryotes - 4424 (source: NCBI BLink).  protein_id AT1G21690.2p  transcript_id AT1G21690.2  protein_id AT1G21690.2p  transcript_id AT1G21690.2  
At1g21690	chr1:007615675	0.0	W/7615675-7615718,7615805-7615883,7616028-7616107,7616604-7616726,7616816-7616885,7616967-7617040,7617242-7617362,7617441-7617503,7617589-7617648,7617748-7617873,7617957-7618043,7618270-7618362	AT1G21690.1 CDS  gene_syn F8K7.11, F8K7_11, emb1968, embryo defective 1968  gene emb1968  go_component nucleolus|GO:0005730|15496452|IDA  go_function nucleotide binding|GO:0000166||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA clamp loader activity|GO:0003689||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component DNA replication factor C complex|GO:0005663||ISS  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function ATPase activity|GO:0016887||ISS  product emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding  note embryo defective 1968 (emb1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: DNA replication factor C complex, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III clamp loader subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: replication factor C 40 kDa, putative (TAIR:AT1G63160.1); Has 12080 Blast hits to 12043 proteins in 1582 species: Archae - 427; Bacteria - 5194; Metazoa - 735; Fungi - 600; Plants - 188; Viruses - 64; Other Eukaryotes - 4872 (source: NCBI BLink).  protein_id AT1G21690.1p  transcript_id AT1G21690.1  protein_id AT1G21690.1p  transcript_id AT1G21690.1  
At1g21695	chr1:007619132	0.0	W/7619132-7619785	AT1G21695.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77400.1); Has 5836 Blast hits to 1030 proteins in 175 species: Archae - 0; Bacteria - 79; Metazoa - 635; Fungi - 270; Plants - 320; Viruses - 57; Other Eukaryotes - 4475 (source: NCBI BLink).  protein_id AT1G21695.1p  transcript_id AT1G21695.1  protein_id AT1G21695.1p  transcript_id AT1G21695.1  
At1g21700	chr1:007620156	0.0	C/7620156-7620731,7620828-7621003,7621105-7621172,7621268-7621353,7621549-7621622,7621715-7622072,7622229-7622767,7623294-7623824,7623963-7623978	AT1G21700.1 CDS  gene_syn ATSWI3C, CHB4, CHROMATIN REMODELING COMPLEX SUBUNIT B, F8K7.13, F8K7_13, SWITCH/SUCROSE NONFERMENTING 3C  gene ATSWI3C  function a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).  go_function DNA binding|GO:0003677||IEA  go_component SWI/SNF complex|GO:0016514|12140326|ISS  go_component chromatin remodeling complex|GO:0016585||ISS  go_process chromatin remodeling|GO:0006338|12140326|ISS  go_function DNA binding|GO:0003677||ISS  product ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding  note SWITCH/SUCROSE NONFERMENTING 3C (ATSWI3C); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex, chromatin remodeling complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: CHB3; DNA binding / transcription factor/ zinc ion binding (TAIR:AT4G34430.4); Has 4336 Blast hits to 3327 proteins in 215 species: Archae - 0; Bacteria - 34; Metazoa - 1816; Fungi - 645; Plants - 247; Viruses - 2; Other Eukaryotes - 1592 (source: NCBI BLink).  protein_id AT1G21700.1p  transcript_id AT1G21700.1  protein_id AT1G21700.1p  transcript_id AT1G21700.1  
At1g21710	chr1:007624439	0.0	W/7624439-7625082,7625300-7625510,7625627-7625869	AT1G21710.1 CDS  gene_syn 8-OXOGUANINE-DNA GLYCOSYLASE 1, F8K7.14, F8K7_14, OGG1  gene OGG1  function Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme.  go_component intracellular|GO:0005622||IEA  go_component chloroplast|GO:0009507||IEA  go_process DNA repair|GO:0006281|12627976|IDA  go_process base-excision repair|GO:0006284||ISS  go_function oxidized purine base lesion DNA N-glycosylase activity|GO:0008534|12627976|IDA  product OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1); oxidized purine base lesion DNA N-glycosylase  note 8-OXOGUANINE-DNA GLYCOSYLASE 1 (OGG1); FUNCTIONS IN: oxidized purine base lesion DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294), 8-oxoguanine DNA glycosylase, N-terminal (InterPro:IPR012904), HhH-GPD domain (InterPro:IPR003265); Has 626 Blast hits to 612 proteins in 245 species: Archae - 68; Bacteria - 157; Metazoa - 157; Fungi - 103; Plants - 23; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT1G21710.1p  transcript_id AT1G21710.1  protein_id AT1G21710.1p  transcript_id AT1G21710.1  
At1g21720	chr1:007626394	0.0	W/7626394-7626399,7626519-7626700,7626810-7626917,7627079-7627168,7627427-7627511,7627838-7627932,7628022-7628070	AT1G21720.1 CDS  gene_syn 20S PROTEASOME BETA SUBUNIT PBC1, F8K7.15, F8K7_15, PBC1, PROTEASOME BETA SUBUNIT C1  gene PBC1  function 20S proteasome beta subunit PBC1 truncated protein (PBC1)  go_component plasma membrane|GO:0005886|17151019|IDA  go_function threonine-type endopeptidase activity|GO:0004298||IEA  go_component proteasome core complex|GO:0005839|9373170|TAS  go_component proteasome core complex|GO:0005839|9611183|TAS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_function peptidase activity|GO:0008233||ISS  product PBC1 (PROTEASOME BETA SUBUNIT C1); peptidase/ threonine-type endopeptidase  note PROTEASOME BETA SUBUNIT C1 (PBC1); FUNCTIONS IN: peptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), 20S proteasome, A and B subunits (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: PBC2; peptidase/ threonine-type endopeptidase (TAIR:AT1G77440.2); Has 2248 Blast hits to 2248 proteins in 294 species: Archae - 251; Bacteria - 15; Metazoa - 946; Fungi - 550; Plants - 164; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G21720.1p  transcript_id AT1G21720.1  protein_id AT1G21720.1p  transcript_id AT1G21720.1  
At1g21722	chr1:007628456	0.0	W/7628456-7628553,7628649-7629252	AT1G21722.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78922.1).  protein_id AT1G21722.1p  transcript_id AT1G21722.1  protein_id AT1G21722.1p  transcript_id AT1G21722.1  
At1g21730	chr1:007630365	0.0	W/7630365-7630621,7630718-7630815,7630905-7630994,7631144-7631196,7631345-7631410,7631494-7631547,7631902-7631961,7632090-7632168,7632461-7632528,7632656-7632718,7632839-7632943,7633021-7633125,7633328-7633435,7633516-7633632,7633879-7634043,7634174-7634344,7634501-7634698,7634910-7635050,7635140-7635265,7635393-7635443,7635556-7635603,7635702-7635953,7636050-7636247	AT1G21730.1 CDS  gene_syn F8K7.17, F8K7_17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process microtubule-based movement|GO:0007018||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_function ATP binding|GO:0005524||IEA  go_function microtubule motor activity|GO:0003777||ISS  product kinesin-related protein (MKRP1)  note kinesin-related protein (MKRP1); FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor region (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding / microtubule motor (TAIR:AT5G06670.1); Has 12653 Blast hits to 10834 proteins in 399 species: Archae - 30; Bacteria - 261; Metazoa - 6347; Fungi - 1203; Plants - 992; Viruses - 18; Other Eukaryotes - 3802 (source: NCBI BLink).  protein_id AT1G21730.1p  transcript_id AT1G21730.1  protein_id AT1G21730.1p  transcript_id AT1G21730.1  
At1g21738	chr1:007641002	0.0	C/7641002-7641094	AT1G21738.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G21738.1p  transcript_id AT1G21738.1  protein_id AT1G21738.1p  transcript_id AT1G21738.1  
At1g21740	chr1:007641580	0.0	W/7641580-7643197,7643669-7643877,7643964-7644187,7644268-7645078	AT1G21740.1 CDS  gene_syn F8K7.18, F8K7_18  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77500.1); Has 1095 Blast hits to 940 proteins in 150 species: Archae - 5; Bacteria - 44; Metazoa - 449; Fungi - 64; Plants - 357; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).  protein_id AT1G21740.1p  transcript_id AT1G21740.1  protein_id AT1G21740.1p  transcript_id AT1G21740.1  
At1g21750	chr1:007645767	0.0	W/7645767-7645939,7646330-7646360,7646471-7646758,7646851-7647039,7647116-7647241,7647553-7647690,7647787-7648024,7648116-7648228,7648305-7648411,7648635-7648695	AT1G21750.2 CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDI5, ATPDIL1-1, F8K7.19, F8K7_19, PDI-LIKE 1-1, PDI5, PROTEIN DISULFIDE ISOMERASE 5  gene ATPDIL1-1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component protein storage vacuole|GO:0000326|18676877|IDA  go_component lytic vacuole within protein storage vacuole|GO:0000327|18676877|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process embryonic development|GO:0009790|18676877|IMP  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_process regulation of programmed cell death|GO:0043067|18676877|IMP  go_process seed development|GO:0048316|18676877|IMP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  go_function protein disulfide isomerase activity|GO:0003756||ISS  product ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase  note PDI-LIKE 1-1 (ATPDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: embryonic development, response to salt stress, regulation of programmed cell death, response to endoplasmic reticulum stress, seed development; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase (TAIR:AT1G77510.1); Has 21485 Blast hits to 11997 proteins in 1693 species: Archae - 187; Bacteria - 8292; Metazoa - 4811; Fungi - 1110; Plants - 1485; Viruses - 23; Other Eukaryotes - 5577 (source: NCBI BLink).  protein_id AT1G21750.2p  transcript_id AT1G21750.2  protein_id AT1G21750.2p  transcript_id AT1G21750.2  
At1g21750	chr1:007645767	0.0	W/7645767-7645939,7646330-7646360,7646471-7646758,7646851-7647039,7647116-7647241,7647553-7647690,7647787-7648024,7648116-7648228,7648305-7648514	AT1G21750.1 CDS  gene_syn ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDI5, ATPDIL1-1, F8K7.19, F8K7_19, PDI-LIKE 1-1, PDI5, PROTEIN DISULFIDE ISOMERASE 5  gene ATPDIL1-1  function Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.  go_component vacuole|GO:0005773|15539469|IDA  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component thylakoid|GO:0009579|11826309|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component protein storage vacuole|GO:0000326|18676877|IDA  go_component lytic vacuole within protein storage vacuole|GO:0000327|18676877|IDA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process embryonic development|GO:0009790|18676877|IMP  go_process response to endoplasmic reticulum stress|GO:0034976|18574595|IEP  go_process regulation of programmed cell death|GO:0043067|18676877|IMP  go_process seed development|GO:0048316|18676877|IMP  go_function protein disulfide isomerase activity|GO:0003756|18574595|ISS  go_function protein disulfide isomerase activity|GO:0003756||ISS  product ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase  note PDI-LIKE 1-1 (ATPDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: embryonic development, response to salt stress, regulation of programmed cell death, response to endoplasmic reticulum stress, seed development; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase (TAIR:AT1G77510.1); Has 21968 Blast hits to 12211 proteins in 1700 species: Archae - 187; Bacteria - 8681; Metazoa - 4758; Fungi - 1116; Plants - 1465; Viruses - 23; Other Eukaryotes - 5738 (source: NCBI BLink).  protein_id AT1G21750.1p  transcript_id AT1G21750.1  protein_id AT1G21750.1p  transcript_id AT1G21750.1  
At1g21760	chr1:007649324	0.0	W/7649324-7649333,7649720-7649803,7649896-7650008,7650103-7650316,7650451-7650524,7650619-7650672,7650768-7650875,7650964-7651022,7651254-7651464,7651554-7651613	AT1G21760.1 CDS  gene_syn ATFBP7, F-BOX PROTEIN 7, F8K7.20, F8K7_20, FBP7  gene FBP7  function This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.  go_component nucleus|GO:0005634|17240087|IDA  go_component mitochondrion|GO:0005739|17240087|IDA  go_process regulation of translation|GO:0006417|17240087|IMP  go_process response to heat|GO:0009408|17240087|IMP  go_process response to cold|GO:0009409|17240087|IMP  go_function molecular_function|GO:0003674||ND  product FBP7 (F-BOX PROTEIN 7)  note F-BOX PROTEIN 7 (FBP7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold, response to heat, regulation of translation; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); Has 356 Blast hits to 356 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 85; Plants - 36; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G21760.1p  transcript_id AT1G21760.1  protein_id AT1G21760.1p  transcript_id AT1G21760.1  
At1g21770	chr1:007651843	0.0	C/7651843-7651926,7651998-7652249	AT1G21770.1 CDS  gene_syn F8K7.21, F8K7_21  go_component peroxisome|GO:0005777|17951448|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: H3/H4 histone acetyltransferase (TAIR:AT1G77540.1); Has 221 Blast hits to 221 proteins in 107 species: Archae - 4; Bacteria - 182; Metazoa - 4; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G21770.1p  transcript_id AT1G21770.1  protein_id AT1G21770.1p  transcript_id AT1G21770.1  
At1g21780	chr1:007652476	0.0	W/7652476-7652588,7652668-7652813,7653054-7653169,7653261-7653866	AT1G21780.1 CDS  gene_syn F8K7.22, F8K7_22  function BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.  go_component Cul3-RING ubiquitin ligase complex|GO:0031463|15659098|IPI  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Cul3-RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 4564 Blast hits to 4525 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 3738; Fungi - 18; Plants - 593; Viruses - 60; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G21780.1p  transcript_id AT1G21780.1  protein_id AT1G21780.1p  transcript_id AT1G21780.1  
At1g21780	chr1:007652476	0.0	W/7652476-7652588,7652668-7652813,7653054-7653169,7653261-7653866	AT1G21780.2 CDS  gene_syn F8K7.22, F8K7_22  function BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B.  go_component Cul3-RING ubiquitin ligase complex|GO:0031463|15659098|IPI  go_process biological_process|GO:0008150||ND  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515||ISS  product BTB/POZ domain-containing protein  note BTB/POZ domain-containing protein; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Cul3-RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G55760.1); Has 4564 Blast hits to 4525 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 3738; Fungi - 18; Plants - 593; Viruses - 60; Other Eukaryotes - 155 (source: NCBI BLink).  protein_id AT1G21780.2p  transcript_id AT1G21780.2  protein_id AT1G21780.2p  transcript_id AT1G21780.2  
At1g21790	chr1:007654357	0.0	W/7654357-7654615,7654893-7655170,7655362-7655691	AT1G21790.1 CDS  gene_syn F8K7.23, F8K7_23  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); Has 127 Blast hits to 127 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G21790.1p  transcript_id AT1G21790.1  protein_id AT1G21790.1p  transcript_id AT1G21790.1  
At1g21800	chr1:007656120	0.0	C/7656120-7656191	AT1G21800.1 tRNA  gene_syn 51452.TRNA-GLN-1, 52107.TRNA-GLN-1, AT1G21805  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Gln (anticodon: TTG)  transcript_id AT1G21800.1  
At1g21810	chr1:007656578	0.0	C/7656578-7656964,7657051-7658456,7658541-7658634	AT1G21810.1 CDS  gene_syn T26F17.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G77580.2); Has 62951 Blast hits to 33517 proteins in 1593 species: Archae - 800; Bacteria - 6354; Metazoa - 33836; Fungi - 4765; Plants - 2651; Viruses - 311; Other Eukaryotes - 14234 (source: NCBI BLink).  protein_id AT1G21810.1p  transcript_id AT1G21810.1  protein_id AT1G21810.1p  transcript_id AT1G21810.1  
At1g21830	chr1:007661429	0.0	C/7661429-7661784,7662257-7662521	AT1G21830.1 CDS  gene_syn AT1G21820, T26F17.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 31 Blast hits to 31 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21830.1p  transcript_id AT1G21830.1  protein_id AT1G21830.1p  transcript_id AT1G21830.1  
At1g21835	chr1:007665664	0.0	W/7665664-7665936	AT1G21835.1 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34792.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21835.1p  transcript_id AT1G21835.1  protein_id AT1G21835.1p  transcript_id AT1G21835.1  
At1g21840	chr1:007666859	0.0	W/7666859-7667581	AT1G21840.1 CDS  gene_syn T26F17.5, UREF, urease accessory protein F  gene UREF  function Encodes a urease accessory protein which is essential for the activation of plant urease.  go_function nickel ion binding|GO:0016151||IEA  go_component cellular_component|GO:0005575||ND  go_process nitrogen compound metabolic process|GO:0006807|16244137|IMP  go_process positive regulation of metalloenzyme activity|GO:0048554|16244137|IMP  product UREF (urease accessory protein F); nickel ion binding  note urease accessory protein F (UREF); FUNCTIONS IN: nickel ion binding; INVOLVED IN: nitrogen compound metabolic process, positive regulation of metalloenzyme activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Urease accessory protein UreF (InterPro:IPR002639); Has 475 Blast hits to 475 proteins in 217 species: Archae - 10; Bacteria - 365; Metazoa - 8; Fungi - 46; Plants - 18; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G21840.1p  transcript_id AT1G21840.1  protein_id AT1G21840.1p  transcript_id AT1G21840.1  
At1g21850	chr1:007667803	0.0	C/7667803-7668045,7668147-7668225,7668363-7668728,7668859-7669201,7669289-7669388,7669605-7669875,7670192-7670301,7670387-7670530	AT1G21850.1 CDS  gene_syn SKU5 Similar 8, T26F17.6, T26F17_6, sks8  gene sks8  go_component endomembrane system|GO:0012505||IEA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks8 (SKU5 Similar 8); copper ion binding / oxidoreductase  note SKU5 Similar 8 (sks8); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks7 (SKU5 Similar 7); copper ion binding / oxidoreductase (TAIR:AT1G21860.1); Has 3640 Blast hits to 3603 proteins in 656 species: Archae - 10; Bacteria - 1030; Metazoa - 250; Fungi - 1434; Plants - 779; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).  protein_id AT1G21850.1p  transcript_id AT1G21850.1  protein_id AT1G21850.1p  transcript_id AT1G21850.1  
At1g21860	chr1:007671028	0.0	C/7671028-7671231,7671329-7671407,7671624-7671989,7672253-7672595,7672680-7672779,7672954-7673224,7673863-7673972,7674072-7674215	AT1G21860.1 CDS  gene_syn SKU5 Similar 7, T26F17.7, T26F17_7, sks7  gene sks7  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_function copper ion binding|GO:0005507||IEA  go_function oxidoreductase activity|GO:0016491||IEA  product sks7 (SKU5 Similar 7); copper ion binding / oxidoreductase  note SKU5 Similar 7 (sks7); FUNCTIONS IN: oxidoreductase activity, copper ion binding; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: sks8 (SKU5 Similar 8); copper ion binding / oxidoreductase (TAIR:AT1G21850.1); Has 3552 Blast hits to 3503 proteins in 630 species: Archae - 8; Bacteria - 947; Metazoa - 243; Fungi - 1443; Plants - 794; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G21860.1p  transcript_id AT1G21860.1  protein_id AT1G21860.1p  transcript_id AT1G21860.1  
At1g21864	chr1:007675565	0.0	W/7675565-7675846	AT1G21864.1 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21866.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21864.1p  transcript_id AT1G21864.1  protein_id AT1G21864.1p  transcript_id AT1G21864.1  
At1g21866	chr1:007677499	0.0	W/7677499-7677780	AT1G21866.1 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21864.1); Has 42 Blast hits to 42 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21866.1p  transcript_id AT1G21866.1  protein_id AT1G21866.1p  transcript_id AT1G21866.1  
At1g21870	chr1:007678208	0.0	W/7678208-7678321,7678418-7678667,7678763-7678970,7679153-7679384,7679476-7679697	AT1G21870.1 CDS  gene_syn T26F17.9, T26F17_9  go_component membrane|GO:0016020||IEA  go_function organic anion transmembrane transporter activity|GO:0008514||ISS  product glucose-6-phosphate/phosphate translocator-related  note glucose-6-phosphate/phosphate translocator-related; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate/phosphate translocator-related (TAIR:AT1G77610.1); Has 2236 Blast hits to 2233 proteins in 236 species: Archae - 0; Bacteria - 50; Metazoa - 608; Fungi - 359; Plants - 914; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).  protein_id AT1G21870.1p  transcript_id AT1G21870.1  protein_id AT1G21870.1p  transcript_id AT1G21870.1  
At1g21880	chr1:007680689	0.0	W/7680689-7681355,7681667-7681784,7681883-7682044,7682136-7682167,7682255-7682526	AT1G21880.2 CDS  gene_syn LYM1, LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR, T26F17.10, T26F17_10  gene LYM1  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)  note LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 356 Blast hits to 346 proteins in 78 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 1; Plants - 210; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G21880.2p  transcript_id AT1G21880.2  protein_id AT1G21880.2p  transcript_id AT1G21880.2  
At1g21880	chr1:007680689	0.0	W/7680689-7681355,7681667-7681784,7681883-7682048	AT1G21880.1 CDS  gene_syn LYM1, LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR, T26F17.10, T26F17_10  gene LYM1  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_process cell wall macromolecule catabolic process|GO:0016998||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process cell wall macromolecule catabolic process|GO:0016998||ISS  go_function molecular_function|GO:0003674||ND  product LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)  note LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 355 Blast hits to 345 proteins in 78 species: Archae - 0; Bacteria - 128; Metazoa - 0; Fungi - 1; Plants - 209; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G21880.1p  transcript_id AT1G21880.1  protein_id AT1G21880.1p  transcript_id AT1G21880.1  
At1g21890	chr1:007682808	0.0	C/7682808-7683030,7683564-7683715,7683807-7683965,7684061-7684328,7684803-7684919,7685069-7685131,7685394-7685581	AT1G21890.1 CDS  gene_syn T26F17.11, T26F17_11  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product nodulin MtN21 family protein  note nodulin MtN21 family protein; LOCATED IN: membrane; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT4G08300.1); Has 1856 Blast hits to 1841 proteins in 322 species: Archae - 16; Bacteria - 796; Metazoa - 4; Fungi - 0; Plants - 633; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).  protein_id AT1G21890.1p  transcript_id AT1G21890.1  protein_id AT1G21890.1p  transcript_id AT1G21890.1  
At1g21900	chr1:007691165	0.0	C/7691165-7691309,7691401-7691477,7691559-7691771,7692112-7692327	AT1G21900.1 CDS  gene_syn T26F17.12, T26F17_12  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G09580.1); Has 1198 Blast hits to 1196 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 609; Fungi - 316; Plants - 130; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G21900.1p  transcript_id AT1G21900.1  protein_id AT1G21900.1p  transcript_id AT1G21900.1  
At1g21910	chr1:007696655	0.0	W/7696655-7697347	AT1G21910.1 CDS  gene_syn T26F17.14, T26F17_14  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_component chloroplast|GO:0009507||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor family protein  note AP2 domain-containing transcription factor family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G77640.1); Has 4650 Blast hits to 3730 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 8; Plants - 3702; Viruses - 2; Other Eukaryotes - 709 (source: NCBI BLink).  protein_id AT1G21910.1p  transcript_id AT1G21910.1  protein_id AT1G21910.1p  transcript_id AT1G21910.1  
At1g21920	chr1:007704454	0.0	C/7704454-7704612,7704690-7704918,7705001-7705866	AT1G21920.1 CDS  gene_syn T26F17.15, T26F17_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related  note MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MORN motif (InterPro:IPR003409); BEST Arabidopsis thaliana protein match is: MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related (TAIR:AT1G77660.1); Has 19724 Blast hits to 5101 proteins in 338 species: Archae - 0; Bacteria - 1960; Metazoa - 3157; Fungi - 112; Plants - 710; Viruses - 0; Other Eukaryotes - 13785 (source: NCBI BLink).  protein_id AT1G21920.1p  transcript_id AT1G21920.1  protein_id AT1G21920.1p  transcript_id AT1G21920.1  
At1g21925	chr1:007710423	0.0	C/7710423-7710725	AT1G21925.1 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21928.1); Has 45 Blast hits to 45 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21925.1p  transcript_id AT1G21925.1  protein_id AT1G21925.1p  transcript_id AT1G21925.1  
At1g21928	chr1:007712211	0.0	C/7712211-7712513	AT1G21928.1 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21925.1); Has 45 Blast hits to 45 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21928.1p  transcript_id AT1G21928.1  protein_id AT1G21928.1p  transcript_id AT1G21928.1  
At1g21930	chr1:007713466	0.0	W/7713466-7713515,7714052-7714298	AT1G21930.1 CDS  gene_syn T26F17.22, T26F17_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21930.1p  transcript_id AT1G21930.1  protein_id AT1G21930.1p  transcript_id AT1G21930.1  
At1g21940	chr1:007715170	0.0	C/7715170-7715561,7716816-7716975	AT1G21940.1 CDS  gene_syn T26F17.16, T26F17_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21950.1); Has 11 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21940.1p  transcript_id AT1G21940.1  protein_id AT1G21940.1p  transcript_id AT1G21940.1  
At1g21945	chr1:007717826	0.0	W/7717826-7722120	AT1G21945.1 mRNA_TE_gene  pseudo  gene_syn T26F17.17, T26F17_17  note Transposable element gene, copia-like retrotransposon family, has a 1.7e-243 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g21950	chr1:007723439	0.0	C/7723439-7723570,7723624-7723863	AT1G21950.1 CDS  gene_syn T26F17.18, T26F17_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21950.1p  transcript_id AT1G21950.1  protein_id AT1G21950.1p  transcript_id AT1G21950.1  
At1g21960	chr1:007725972	0.0	W/7725972-7726586	AT1G21960.1 CDS  gene_syn T26F17.19, T26F17_19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G18760.1); Has 5524 Blast hits to 5512 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 2108; Fungi - 346; Plants - 2225; Viruses - 7; Other Eukaryotes - 838 (source: NCBI BLink).  protein_id AT1G21960.1p  transcript_id AT1G21960.1  protein_id AT1G21960.1p  transcript_id AT1G21960.1  
At1g21970	chr1:007727750	0.0	C/7727750-7728414,7729520-7729571	AT1G21970.1 CDS  gene_syn EMB 212, EMB212, EMBRYO DEFECTIVE 212, LEAFY COTYLEDON 1, LEC1, NF-YB9, NUCLEAR FACTOR Y, SUBUNIT B9, T26F17.20, T26F17_20  gene LEC1  function Transcriptional activator of genes required for both embryo maturation and cellular differentiation. Sequence is similar to HAP3 subunit of the CCAAT-box binding factor. HAP3 subunit is divided into three domains: an amino-terminal A domain, a central B domain, and a carboxyl-terminal C domain. LEC1 shared high similarity with other HAP3 homologs only in central, B domain. LEC1 is required for the specification of cotyledon identity and the completion of embryo maturation. It was sufficient to induce embryogenic programs in vegetative cells, suggesting that LEC1 is a major embryonic regulator that mediates the switch between embryo and vegetative development. Mutants are desiccation intolerant, have trichomes on cotyledons and exhibit precocious meristem activation. Levels of the ABI3 and FUS3 transcripts were significantly reduced in developing siliques of the lec1-1 mutants, indicating that LEC1 down-regulates FUS3 and ABI3.When LEC1 is overexpressed from an inducible promoter, the expression of numerous genes involved in fatty acid biosynthesis is increased suggesting a role in positive regulation of FA biosynthesis.  go_component intracellular|GO:0005622||IEA  go_component nucleus|GO:0005634||IEA  go_process response to heat|GO:0009408|10759505|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|9657152|IMP  go_process somatic embryogenesis|GO:0010262|16034595|IMP  go_process positive regulation of gene-specific transcription|GO:0043193|19207209|IDA  go_process positive regulation of fatty acid biosynthetic process|GO:0045723|18689444|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|18689444|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9657152|ISS  go_function transcription activator activity|GO:0016563|19207209|IDA  product LEC1 (LEAFY COTYLEDON 1); transcription activator/ transcription factor  note LEAFY COTYLEDON 1 (LEC1); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, intracellular; EXPRESSED IN: stem, cultured somatic embryo, leaf, endosperm, seed; EXPRESSED DURING: seed maturation stage, C globular stage, E expanded cotyledon stage, D bilateral stage, B proembryo stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6); transcription activator/ transcription activator binding / transcription factor (TAIR:AT5G47670.2); Has 972 Blast hits to 972 proteins in 178 species: Archae - 2; Bacteria - 0; Metazoa - 387; Fungi - 221; Plants - 292; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G21970.1p  transcript_id AT1G21970.1  protein_id AT1G21970.1p  transcript_id AT1G21970.1  
At1g21973	chr1:007730911	0.0	C/7730911-7731144	AT1G21973.1 pseudogenic_transcript  pseudo  function Encodes a Plant thionin family protein [pseudogene]  
At1g21975	chr1:007732280	0.0	W/7732280-7732468	AT1G21975.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G21975.1p  transcript_id AT1G21975.1  protein_id AT1G21975.1p  transcript_id AT1G21975.1  
At1g21980	chr1:007735053	0.0	W/7735053-7736149,7736244-7736408,7736577-7736742,7736957-7737067,7737148-7737341,7737431-7737561,7737647-7737740,7738009-7738309	AT1G21980.1 CDS  gene_syn ATPIP5K1, ATPIPK1, PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE, PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1  gene ATPIP5K1  function Type I phosphatidylinositol-4-phosphate 5-kinase. Preferentially phosphorylates PtdIns4P. Induced by water stress and abscisic acid in Arabidopsis thaliana. Expressed in procambial cells of leaves, flowers and roots. A N-terminal Membrane Occupation and Recognition Nexus (MORN)affects enzyme activity and distribution.  go_component cellular_component|GO:0005575||ND  go_process hyperosmotic response|GO:0006972|17197438|IDA  go_function actin monomer binding|GO:0003785|17379598|IDA  go_function phosphatidylinositol phosphate kinase activity|GO:0016307|11672432|IDA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308|15949803|IDA  go_function 1-phosphatidylinositol-4-phosphate 5-kinase activity|GO:0016308||ISS  go_function actin filament binding|GO:0051015|17379598|IDA  product ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1); 1-phosphatidylinositol-4-phosphate 5-kinase/ actin filament binding / actin monomer binding / phosphatidylinositol phosphate kinase  note PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1 (ATPIP5K1); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, actin filament binding, phosphatidylinositol phosphate kinase activity, actin monomer binding; INVOLVED IN: hyperosmotic response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative (TAIR:AT1G77740.1); Has 23163 Blast hits to 6365 proteins in 385 species: Archae - 0; Bacteria - 2308; Metazoa - 3798; Fungi - 291; Plants - 663; Viruses - 0; Other Eukaryotes - 16103 (source: NCBI BLink).  protein_id AT1G21980.1p  transcript_id AT1G21980.1  protein_id AT1G21980.1p  transcript_id AT1G21980.1  
At1g21990	chr1:007740530	0.0	C/7740530-7740841,7740933-7741073,7741162-7742106	AT1G21990.1 CDS  gene_syn F2E2.2, F2E2_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G29930.3); Has 1024 Blast hits to 994 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1024; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G21990.1p  transcript_id AT1G21990.1  protein_id AT1G21990.1p  transcript_id AT1G21990.1  
At1g22000	chr1:007744189	0.0	W/7744189-7745145,7745232-7745369,7745442-7745710,7746043-7746070,7746170-7746334,7746372-7746557,7746683-7747123	AT1G22000.1 CDS  gene_syn F2E2.4, F2E2_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22060.1); Has 11324 Blast hits to 8219 proteins in 529 species: Archae - 104; Bacteria - 638; Metazoa - 5767; Fungi - 684; Plants - 1525; Viruses - 37; Other Eukaryotes - 2569 (source: NCBI BLink).  protein_id AT1G22000.1p  transcript_id AT1G22000.1  protein_id AT1G22000.1p  transcript_id AT1G22000.1  
At1g22010	chr1:007749571	0.0	W/7749571-7750062	AT1G22010.1 CDS  gene_syn F2E2.5, F2E2_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22010.1p  transcript_id AT1G22010.1  protein_id AT1G22010.1p  transcript_id AT1G22010.1  
At1g22015	chr1:007751225	0.0	C/7751225-7751382,7751495-7751604,7751711-7751836,7751932-7752019,7752115-7752235,7752310-7752382,7752459-7752522,7752615-7752814,7752910-7752968,7753085-7753184,7753328-7753425	AT1G22015.1 CDS  gene_syn DD46  gene DD46  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function galactosyltransferase activity|GO:0008378||IEA  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product DD46; galactosyltransferase/ transferase, transferring hexosyl groups  note DD46; FUNCTIONS IN: transferase activity, transferring hexosyl groups, galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: leaf whorl, embryo, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT1G77810.2); Has 1233 Blast hits to 1228 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 922; Fungi - 6; Plants - 283; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G22015.1p  transcript_id AT1G22015.1  protein_id AT1G22015.1p  transcript_id AT1G22015.1  
At1g22020	chr1:007754599	0.0	W/7754599-7755666,7755820-7756225,7756646-7756747,7756864-7757087	AT1G22020.1 CDS  gene_syn F2E2.7, F2E2_7, SHM6, serine hydroxymethyltransferase 6  gene SHM6  function Encodes a putative serine hydroxymethyltransferase.  go_process glycine metabolic process|GO:0006544||IEA  go_process L-serine metabolic process|GO:0006563||IEA  go_function catalytic activity|GO:0003824||IEA  go_function glycine hydroxymethyltransferase activity|GO:0004372||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component cellular_component|GO:0005575||ND  go_process glycine metabolic process|GO:0006544||ISS  go_process L-serine metabolic process|GO:0006563||ISS  go_function glycine hydroxymethyltransferase activity|GO:0004372||ISS  product SHM6 (serine hydroxymethyltransferase 6); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding  note serine hydroxymethyltransferase 6 (SHM6); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: SHM7 (serine hydroxymethyltransferase 7); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding (TAIR:AT1G36370.1); Has 8165 Blast hits to 8146 proteins in 1617 species: Archae - 141; Bacteria - 3453; Metazoa - 297; Fungi - 186; Plants - 213; Viruses - 6; Other Eukaryotes - 3869 (source: NCBI BLink).  protein_id AT1G22020.1p  transcript_id AT1G22020.1  protein_id AT1G22020.1p  transcript_id AT1G22020.1  
At1g22030	chr1:007759337	0.0	C/7759337-7759987,7760065-7760415	AT1G22030.1 CDS  gene_syn F2E2.8, F2E2_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 60 Blast hits to 60 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22030.1p  transcript_id AT1G22030.1  protein_id AT1G22030.1p  transcript_id AT1G22030.1  
At1g22040	chr1:007768370	0.0	W/7768370-7769797	AT1G22040.1 CDS  gene_syn F2E2.11, F2E2_11  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G55270.1); Has 8530 Blast hits to 4244 proteins in 221 species: Archae - 18; Bacteria - 386; Metazoa - 6931; Fungi - 33; Plants - 777; Viruses - 68; Other Eukaryotes - 317 (source: NCBI BLink).  protein_id AT1G22040.1p  transcript_id AT1G22040.1  protein_id AT1G22040.1p  transcript_id AT1G22040.1  
At1g22050	chr1:007771897	0.0	W/7771897-7772029,7772485-7772655,7772788-7772843	AT1G22050.1 CDS  gene_syn F2E2.12, F2E2_12, MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR, MUB6  gene MUB6  go_process protein modification process|GO:0006464||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)  note MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR (MUB6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR) (TAIR:AT1G77870.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22050.1p  transcript_id AT1G22050.1  protein_id AT1G22050.1p  transcript_id AT1G22050.1  
At1g22060	chr1:007773373	0.0	C/7773373-7773649,7773743-7773885,7773967-7774068,7774241-7774396,7774704-7779458,7779672-7779836,7779947-7780069,7780155-7780355,7780509-7780586	AT1G22060.1 CDS  gene_syn F2E2.13, F2E2_13  go_component vacuole|GO:0005773|15539469|IDA  product unknown protein  note LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22000.1); Has 67094 Blast hits to 30189 proteins in 1408 species: Archae - 880; Bacteria - 6261; Metazoa - 35085; Fungi - 5326; Plants - 2622; Viruses - 293; Other Eukaryotes - 16627 (source: NCBI BLink).  protein_id AT1G22060.1p  transcript_id AT1G22060.1  protein_id AT1G22060.1p  transcript_id AT1G22060.1  
At1g22065	chr1:007785889	0.0	W/7785889-7786107	AT1G22065.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22065.1p  transcript_id AT1G22065.1  protein_id AT1G22065.1p  transcript_id AT1G22065.1  
At1g22067	chr1:007787391	0.0	W/7787391-7787525	AT1G22067.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G22067.1p  transcript_id AT1G22067.1  protein_id AT1G22067.1p  transcript_id AT1G22067.1  
At1g22070	chr1:007789651	0.0	W/7789651-7789656,7789989-7790189,7790276-7790362,7790498-7790557,7790633-7790710,7790797-7790860,7790961-7791232,7791309-7791542,7791669-7791821	AT1G22070.1 CDS  gene_syn F2E2.14, F2E2_14, TGA3, TRANSCRIPTION FACTOR TGA3  gene TGA3  function Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.  go_component nucleus|GO:0005634||IEA  go_process systemic acquired resistance, salicylic acid mediated signaling pathway|GO:0009862|10659709|IPI  go_process defense response to bacterium|GO:0042742|17369431|IMP  go_function DNA binding|GO:0003677|8003690|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  go_function transcription factor activity|GO:0003700|8003690|IDA  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|10659709|IPI  go_function protein binding|GO:0005515|8672891|IDA  go_function calmodulin binding|GO:0005516|11782485|TAS  product TGA3; DNA binding / calmodulin binding / protein binding / transcription factor  note TGA3; FUNCTIONS IN: protein binding, transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP family transcription factor (TAIR:AT1G77920.1); Has 648 Blast hits to 647 proteins in 80 species: Archae - 0; Bacteria - 38; Metazoa - 5; Fungi - 21; Plants - 492; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).  protein_id AT1G22070.1p  transcript_id AT1G22070.1  protein_id AT1G22070.1p  transcript_id AT1G22070.1  
At1g22080	chr1:007792404	0.0	C/7792404-7792412,7792628-7792715,7792790-7792977,7793225-7793312,7793389-7793735,7793811-7794089	AT1G22080.1 CDS  gene_syn F2E2.15, F2E2_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 46 Blast hits to 46 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22080.1p  transcript_id AT1G22080.1  protein_id AT1G22080.1p  transcript_id AT1G22080.1  
At1g22080	chr1:007792404	0.0	C/7792404-7792412,7792628-7792715,7792790-7792977,7793225-7793312,7793389-7793735,7793811-7794089	AT1G22080.2 CDS  gene_syn F2E2.15, F2E2_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 46 Blast hits to 46 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22080.2p  transcript_id AT1G22080.2  protein_id AT1G22080.2p  transcript_id AT1G22080.2  
At1g22090	chr1:007795721	0.0	W/7795721-7795774,7795883-7796032,7796133-7796319,7796406-7796527,7796677-7796763,7796863-7797252	AT1G22090.1 CDS  gene_syn F2E2.16, F2E2_16, emb2204, embryo defective 2204  gene emb2204  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function molecular_function|GO:0003674||ND  product emb2204 (embryo defective 2204)  note embryo defective 2204 (emb2204); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02770.1); Has 74 Blast hits to 73 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22090.1p  transcript_id AT1G22090.1  protein_id AT1G22090.1p  transcript_id AT1G22090.1  
At1g22100	chr1:007798023	0.0	C/7798023-7798151,7798221-7798805,7798886-7798996,7799085-7799125,7799315-7799462,7799594-7799800,7799926-7800030	AT1G22100.1 CDS  gene_syn F2E2.17, F2E2_17  go_function ATP binding|GO:0005524||IEA  go_function inositol pentakisphosphate 2-kinase activity|GO:0035299||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding / inositol pentakisphosphate 2-kinase  note ATP binding / inositol pentakisphosphate 2-kinase; FUNCTIONS IN: inositol pentakisphosphate 2-kinase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Inositol-pentakisphosphate 2-kinase, metazoa (InterPro:IPR018009), Inositol-pentakisphosphate 2-kinase (InterPro:IPR009286); BEST Arabidopsis thaliana protein match is: ATP binding / inositol pentakisphosphate 2-kinase (TAIR:AT1G59312.1); Has 169 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 14; Plants - 53; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G22100.1p  transcript_id AT1G22100.1  protein_id AT1G22100.1p  transcript_id AT1G22100.1  
At1g22110	chr1:007801625	0.0	C/7801625-7802473	AT1G22110.1 CDS  gene_syn F2E2.18, F2E2_18  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30e (InterPro:IPR000231); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77932.1); Has 4599 Blast hits to 1714 proteins in 218 species: Archae - 10; Bacteria - 592; Metazoa - 1350; Fungi - 397; Plants - 177; Viruses - 111; Other Eukaryotes - 1962 (source: NCBI BLink).  protein_id AT1G22110.1p  transcript_id AT1G22110.1  protein_id AT1G22110.1p  transcript_id AT1G22110.1  
At1g22120	chr1:007806655	0.0	C/7806655-7806730,7806838-7806944,7807033-7807101,7807313-7807427,7807606-7807707,7807799-7807906,7808021-7808089,7808178-7808300,7808391-7808488,7808579-7808776,7808875-7809132,7809567-7809632	AT1G22120.1 CDS  gene_syn F2E2.19, F2E2_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 32 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 2; Plants - 8; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G22120.1p  transcript_id AT1G22120.1  protein_id AT1G22120.1p  transcript_id AT1G22120.1  
At1g22130	chr1:007812387	0.0	C/7812387-7812524,7812598-7812763,7812883-7813143,7813231-7813292,7813372-7813399,7813535-7813596,7813680-7813698,7813797-7813829,7813922-7813975,7814075-7814259	AT1G22130.1 CDS  gene_syn AGAMOUS-LIKE 104, AGL104, F2E2.20, F2E2_20  gene AGL104  function Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL104 is expressed in pollen.It forms heterodimers with other MICK family members (AGL65 and AGL30). Involved in late stages of pollen development and pollen tube growth.  go_component nucleus|GO:0005634||IEA  go_process pollen development|GO:0009555|19211705|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL104 (AGAMOUS-LIKE 104); DNA binding / transcription factor  note AGAMOUS-LIKE 104 (AGL104); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL66 (AGAMOUS-LIKE 66); transcription factor (TAIR:AT1G77980.1); Has 4354 Blast hits to 4353 proteins in 567 species: Archae - 0; Bacteria - 0; Metazoa - 545; Fungi - 205; Plants - 3548; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G22130.1p  transcript_id AT1G22130.1  protein_id AT1G22130.1p  transcript_id AT1G22130.1  
At1g22140	chr1:007815083	0.0	C/7815083-7815129,7815229-7815292,7815494-7815577	AT1G22140.2 CDS  gene_syn F2E2.21, F2E2_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22140.2p  transcript_id AT1G22140.2  protein_id AT1G22140.2p  transcript_id AT1G22140.2  
At1g22140	chr1:007815158	0.0	C/7815158-7815292,7815494-7815577	AT1G22140.1 CDS  gene_syn F2E2.21, F2E2_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 27 Blast hits to 27 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22140.1p  transcript_id AT1G22140.1  protein_id AT1G22140.1p  transcript_id AT1G22140.1  
At1g22150	chr1:007818361	0.0	W/7818361-7818690,7818773-7818821,7818941-7819148,7819244-7819418,7819500-7819565,7819645-7819758,7819855-7819971,7820065-7820478,7820566-7820756,7820858-7820943,7821035-7821111,7821201-7821344	AT1G22150.1 CDS  gene_syn F2E2.22, F2E2_22, SULFATE TANSPORTER SULTR1;3, SULTR1;3  gene SULTR1;3  function sulfate transporter Sultr1;3  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product SULTR1;3; sulfate transmembrane transporter  note SULTR1;3; FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: sperm cell, leaf whorl, petal, flower, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR1;2 (SULFATE TRANSPORTER 1;2); sulfate transmembrane transporter (TAIR:AT1G78000.2); Has 6736 Blast hits to 6685 proteins in 1103 species: Archae - 34; Bacteria - 3451; Metazoa - 979; Fungi - 295; Plants - 325; Viruses - 0; Other Eukaryotes - 1652 (source: NCBI BLink).  protein_id AT1G22150.1p  transcript_id AT1G22150.1  protein_id AT1G22150.1p  transcript_id AT1G22150.1  
At1g22160	chr1:007823238	0.0	W/7823238-7823533,7823627-7823774	AT1G22160.1 CDS  gene_syn F2E2.23, F2E2_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product senescence-associated protein-related  note senescence-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: senescence-associated protein-related (TAIR:AT1G78020.1); Has 281 Blast hits to 281 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22160.1p  transcript_id AT1G22160.1  protein_id AT1G22160.1p  transcript_id AT1G22160.1  
At1g22170	chr1:007826603	0.0	W/7826603-7826828,7826923-7827265,7827358-7827514,7827593-7827694,7827793-7827912,7827999-7828055	AT1G22170.1 CDS  gene_syn F16L1.10, F16L1_10  go_component chloroplast|GO:0009507||IEA  go_process glycolysis|GO:0006096||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product phosphoglycerate/bisphosphoglycerate mutase family protein  note phosphoglycerate/bisphosphoglycerate mutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, catalytic activity; INVOLVED IN: glycolysis, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate mutase (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase (InterPro:IPR001345), Phosphoglycerate mutase 1 (InterPro:IPR005952); BEST Arabidopsis thaliana protein match is: PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE); catalytic/ intramolecular transferase, phosphotransferases (TAIR:AT1G78050.1); Has 7389 Blast hits to 7278 proteins in 1221 species: Archae - 36; Bacteria - 4021; Metazoa - 513; Fungi - 222; Plants - 92; Viruses - 0; Other Eukaryotes - 2505 (source: NCBI BLink).  protein_id AT1G22170.1p  transcript_id AT1G22170.1  protein_id AT1G22170.1p  transcript_id AT1G22170.1  
At1g22180	chr1:007828434	0.0	C/7828434-7828784,7828867-7829109,7829191-7829289,7829380-7829436	AT1G22180.1 CDS  gene_syn F16L1.9, F16L1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G08690.2); Has 1547 Blast hits to 1547 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 710; Fungi - 355; Plants - 294; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G22180.1p  transcript_id AT1G22180.1  protein_id AT1G22180.1p  transcript_id AT1G22180.1  
At1g22180	chr1:007828434	0.0	C/7828434-7828784,7828867-7829109,7829191-7829289,7829380-7829436	AT1G22180.3 CDS  gene_syn F16L1.9, F16L1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G08690.2); Has 1547 Blast hits to 1547 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 710; Fungi - 355; Plants - 294; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G22180.3p  transcript_id AT1G22180.3  protein_id AT1G22180.3p  transcript_id AT1G22180.3  
At1g22180	chr1:007828434	0.0	C/7828434-7828784,7828867-7829109,7829191-7829289,7829380-7829556,7829671-7829745	AT1G22180.2 CDS  gene_syn F16L1.9, F16L1_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G08690.2); Has 1880 Blast hits to 1880 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 814; Fungi - 399; Plants - 444; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).  protein_id AT1G22180.2p  transcript_id AT1G22180.2  protein_id AT1G22180.2p  transcript_id AT1G22180.2  
At1g22190	chr1:007836245	0.0	W/7836245-7837030	AT1G22190.1 CDS  gene_syn F16L1.8, F16L1_8  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634|9192694|IC  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677|9192694|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9192694|ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAP2.4 (related to AP2 4); DNA binding / transcription factor (TAIR:AT1G78080.1); Has 3906 Blast hits to 3758 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 3863; Viruses - 7; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G22190.1p  transcript_id AT1G22190.1  protein_id AT1G22190.1p  transcript_id AT1G22190.1  
At1g22200	chr1:007837857	0.0	C/7837857-7837948,7838048-7838114,7838212-7838304,7838393-7838446,7838692-7838743,7838833-7838900,7838986-7839165,7839351-7839443,7839633-7839713,7839863-7839943,7840058-7840141,7840218-7840291,7840461-7840602	AT1G22200.1 CDS  gene_syn F16L1.7, F16L1_7  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36050.2); Has 903 Blast hits to 793 proteins in 144 species: Archae - 0; Bacteria - 0; Metazoa - 386; Fungi - 184; Plants - 142; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT1G22200.1p  transcript_id AT1G22200.1  protein_id AT1G22200.1p  transcript_id AT1G22200.1  
At1g22200	chr1:007838104	0.0	C/7838104-7838114,7838208-7838304,7838393-7838446,7838692-7838743,7838833-7838900,7838986-7839165,7839351-7839443,7839633-7839713,7839863-7839943,7840058-7840141,7840218-7840291,7840461-7840602	AT1G22200.2 CDS  gene_syn F16L1.7, F16L1_7  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36050.2); Has 847 Blast hits to 769 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 181; Plants - 112; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).  protein_id AT1G22200.2p  transcript_id AT1G22200.2  protein_id AT1G22200.2p  transcript_id AT1G22200.2  
At1g22210	chr1:007841518	0.0	W/7841518-7841652,7841919-7842059,7842198-7842269,7842373-7842456,7842538-7842597,7842703-7842804,7842972-7843049,7843209-7843278,7843387-7843457,7843558-7843650,7843756-7843812	AT1G22210.1 CDS  gene_syn F16L1.6, F16L1_6  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  product trehalose-6-phosphate phosphatase, putative  note trehalose-6-phosphate phosphatase, putative; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE); trehalose-phosphatase (TAIR:AT1G78090.1); Has 1455 Blast hits to 1451 proteins in 515 species: Archae - 29; Bacteria - 748; Metazoa - 195; Fungi - 101; Plants - 268; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT1G22210.1p  transcript_id AT1G22210.1  protein_id AT1G22210.1p  transcript_id AT1G22210.1  
At1g22220	chr1:007846694	0.0	W/7846694-7847638	AT1G22220.1 CDS  gene_syn F16L1.5, F16L1_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G78100.1); Has 82 Blast hits to 81 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22220.1p  transcript_id AT1G22220.1  protein_id AT1G22220.1p  transcript_id AT1G22220.1  
At1g22230	chr1:007850093	0.0	W/7850093-7851037	AT1G22230.1 CDS  gene_syn F16L1.4, F16L1_4  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78110.1); Has 2751 Blast hits to 1875 proteins in 141 species: Archae - 2; Bacteria - 36; Metazoa - 1492; Fungi - 192; Plants - 112; Viruses - 74; Other Eukaryotes - 843 (source: NCBI BLink).  protein_id AT1G22230.1p  transcript_id AT1G22230.1  protein_id AT1G22230.1p  transcript_id AT1G22230.1  
At1g22240	chr1:007853084	0.0	W/7853084-7853943,7854027-7854189,7854270-7854433,7854513-7854768,7854859-7854963	AT1G22240.1 CDS  gene_syn APUM8, Arabidopsis Pumilio 8, F16L1.3, F16L1_3  gene APUM8  go_function RNA binding|GO:0003723||IEA  go_function binding|GO:0005488||IEA  go_function RNA binding|GO:0003723||ISS  product APUM8 (Arabidopsis Pumilio 8); RNA binding / binding  note Arabidopsis Pumilio 8 (APUM8); FUNCTIONS IN: RNA binding, binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding region (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: APUM7 (Arabidopsis Pumilio 7); RNA binding / binding (TAIR:AT1G78160.1); Has 2039 Blast hits to 1212 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 579; Fungi - 545; Plants - 407; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).  protein_id AT1G22240.1p  transcript_id AT1G22240.1  protein_id AT1G22240.1p  transcript_id AT1G22240.1  
At1g22250	chr1:007858961	0.0	W/7858961-7859176,7859262-7859648	AT1G22250.1 CDS  gene_syn F16L1.2, F16L1_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78170.1); Has 33 Blast hits to 33 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22250.1p  transcript_id AT1G22250.1  protein_id AT1G22250.1p  transcript_id AT1G22250.1  
At1g22260	chr1:007860160	0.0	C/7860160-7860261,7860659-7860718,7860792-7860875,7860957-7861070,7861161-7861247,7861402-7861488,7861558-7861668,7861753-7861860,7862274-7862384,7862457-7862525,7862649-7862777,7862862-7863110,7863190-7863866,7864051-7864149,7864231-7864356,7864449-7864656,7864867-7864916,7864998-7865142	AT1G22260.1 CDS  gene_syn T16E15.12, T16E15_12, ZYP1, ZYP1a  gene ZYP1a  function One of two nearly identical proteins (ZYP1b) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.  go_component synaptonemal complex|GO:0000795|16230536|IDA  go_process synapsis|GO:0007129|16230536|IMP  go_process reciprocal meiotic recombination|GO:0007131|16230536|IMP  product ZYP1a  note ZYP1a; INVOLVED IN: synapsis, reciprocal meiotic recombination; LOCATED IN: synaptonemal complex; BEST Arabidopsis thaliana protein match is: ZYP1b (TAIR:AT1G22275.1); Has 136206 Blast hits to 67304 proteins in 2172 species: Archae - 1406; Bacteria - 18852; Metazoa - 63521; Fungi - 9227; Plants - 4225; Viruses - 762; Other Eukaryotes - 38213 (source: NCBI BLink).  protein_id AT1G22260.1p  transcript_id AT1G22260.1  protein_id AT1G22260.1p  transcript_id AT1G22260.1  
At1g22270	chr1:007865548	0.0	W/7865548-7865922	AT1G22270.1 CDS  gene_syn T16E15.11, T16E15_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78190.1); Has 289 Blast hits to 289 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 81; Plants - 34; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G22270.1p  transcript_id AT1G22270.1  protein_id AT1G22270.1p  transcript_id AT1G22270.1  
At1g22275	chr1:007867245	0.0	W/7867245-7867389,7867471-7867520,7867767-7867974,7868067-7868192,7868275-7868373,7868578-7869254,7869334-7869582,7869654-7869782,7869906-7869974,7870048-7870158,7870459-7870566,7870651-7870761,7870830-7870916,7871062-7871133,7871250-7871330,7871403-7871486,7871553-7871615,7871965-7872066	AT1G22275.1 CDS  gene_syn ZYP1, ZYP1b  gene ZYP1b  function One of two nearly identical proteins (ZYP1a) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.  go_component synaptonemal complex|GO:0000795|16230536|IDA  go_process synapsis|GO:0007129|16230536|IMP  go_process reciprocal meiotic recombination|GO:0007131|16230536|IMP  product ZYP1b  note ZYP1b; INVOLVED IN: synapsis, reciprocal meiotic recombination; LOCATED IN: synaptonemal complex; EXPRESSED IN: shoot apex, embryo, pedicel, flower, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: ZYP1a (TAIR:AT1G22260.1); Has 113921 Blast hits to 57904 proteins in 1981 species: Archae - 1278; Bacteria - 14266; Metazoa - 53350; Fungi - 7742; Plants - 3686; Viruses - 612; Other Eukaryotes - 32987 (source: NCBI BLink).  protein_id AT1G22275.1p  transcript_id AT1G22275.1  protein_id AT1G22275.1p  transcript_id AT1G22275.1  
At1g22280	chr1:007874236	0.0	W/7874236-7874271,7874403-7874642,7874731-7875007,7875101-7875255,7875359-7875496	AT1G22280.1 CDS  gene_syn T16E15.10, T16E15_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G34750.1); Has 5050 Blast hits to 5040 proteins in 602 species: Archae - 7; Bacteria - 922; Metazoa - 1271; Fungi - 506; Plants - 1288; Viruses - 11; Other Eukaryotes - 1045 (source: NCBI BLink).  protein_id AT1G22280.1p  transcript_id AT1G22280.1  protein_id AT1G22280.1p  transcript_id AT1G22280.1  
At1g22280	chr1:007874236	0.0	W/7874236-7874271,7874403-7874642,7874731-7875054	AT1G22280.2 CDS  gene_syn T16E15.10, T16E15_10  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function catalytic activity|GO:0003824||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product protein phosphatase 2C, putative / PP2C, putative  note protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: protein phosphatase 2C, putative / PP2C, putative (TAIR:AT1G34750.1); Has 2894 Blast hits to 2887 proteins in 260 species: Archae - 0; Bacteria - 115; Metazoa - 1037; Fungi - 221; Plants - 930; Viruses - 4; Other Eukaryotes - 587 (source: NCBI BLink).  protein_id AT1G22280.2p  transcript_id AT1G22280.2  protein_id AT1G22280.2p  transcript_id AT1G22280.2  
At1g22290	chr1:007876966	0.0	C/7876966-7877026,7877123-7877199,7877307-7877373,7877453-7877771,7877849-7877915	AT1G22290.1 CDS  gene_syn T16E15.9, T16E15_9  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product 14-3-3 protein GF14, putative (GRF10)  note 14-3-3 protein GF14, putative (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding; EXPRESSED IN: pedicel, flower, root, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G22300.3); Has 1941 Blast hits to 1939 proteins in 282 species: Archae - 0; Bacteria - 0; Metazoa - 959; Fungi - 202; Plants - 521; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink).  protein_id AT1G22290.1p  transcript_id AT1G22290.1  protein_id AT1G22290.1p  transcript_id AT1G22290.1  
At1g22300	chr1:007879146	0.0	C/7879146-7879151,7879250-7879287,7879636-7879784,7879866-7879975,7880083-7880170,7880378-7880684,7881037-7881103	AT1G22300.1 CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, 14-3-3EPSILON, GENERAL REGULATORY FACTOR 10, GF14 EPSILON, GRF10  gene GRF10  function Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component cytoplasm|GO:0005737||IDA  go_component plasma membrane|GO:0005886||IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF11 (GENERAL REGULATORY FACTOR 11); ATPase binding / amino acid binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G34760.2); Has 2101 Blast hits to 2093 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1027; Fungi - 226; Plants - 540; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).  protein_id AT1G22300.1p  transcript_id AT1G22300.1  protein_id AT1G22300.1p  transcript_id AT1G22300.1  
At1g22300	chr1:007879244	0.0	C/7879244-7879287,7879636-7879784,7879866-7879975,7880083-7880170,7880378-7880684,7881037-7881103	AT1G22300.2 CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, 14-3-3EPSILON, GENERAL REGULATORY FACTOR 10, GF14 EPSILON, GRF10  gene GRF10  function Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component cytoplasm|GO:0005737||IDA  go_component plasma membrane|GO:0005886||IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF11 (GENERAL REGULATORY FACTOR 11); ATPase binding / amino acid binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G34760.1); Has 2099 Blast hits to 2091 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1027; Fungi - 226; Plants - 540; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT1G22300.2p  transcript_id AT1G22300.2  protein_id AT1G22300.2p  transcript_id AT1G22300.2  
At1g22300	chr1:007879601	0.0	C/7879601-7879784,7879866-7879975,7880083-7880170,7880378-7880684,7881037-7881103	AT1G22300.3 CDS  gene_syn 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, 14-3-3EPSILON, GENERAL REGULATORY FACTOR 10, GF14 EPSILON, GRF10  gene GRF10  function Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1  go_component mitochondrion|GO:0005739|17137349|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function ATP binding|GO:0005524|17137349|IDA  go_component cytoplasm|GO:0005737||IDA  go_component plasma membrane|GO:0005886||IDA  go_component chloroplast stroma|GO:0009570|9276953|IDA  go_process brassinosteroid mediated signaling|GO:0009742|17681130|IPI  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF10 (GENERAL REGULATORY FACTOR 10); ATP binding / protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF11 (GENERAL REGULATORY FACTOR 11); ATPase binding / amino acid binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT1G34760.2); Has 2098 Blast hits to 2090 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 1027; Fungi - 226; Plants - 539; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT1G22300.3p  transcript_id AT1G22300.3  protein_id AT1G22300.3p  transcript_id AT1G22300.3  
At1g22310	chr1:007881714	0.0	C/7881714-7882179,7882536-7883125,7883197-7883418	AT1G22310.1 CDS  gene_syn MBD8, T16E15.7, T16E15_7  gene MBD8  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD8; methyl-CpG binding  note MBD8; FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956), DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G22310.1p  transcript_id AT1G22310.1  protein_id AT1G22310.1p  transcript_id AT1G22310.1  
At1g22310	chr1:007881714	0.0	C/7881714-7882179,7882536-7883644	AT1G22310.2 CDS  gene_syn MBD8, T16E15.7, T16E15_7  gene MBD8  function Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.  go_component nucleus|GO:0005634||IEA  go_process biological_process|GO:0008150||ND  go_function methyl-CpG binding|GO:0008327|12787239|ISS  product MBD8; methyl-CpG binding  note MBD8; FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding, conserved site (InterPro:IPR017956), DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 111 Blast hits to 94 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G22310.2p  transcript_id AT1G22310.2  protein_id AT1G22310.2p  transcript_id AT1G22310.2  
At1g22320	chr1:007884417	0.0	C/7884417-7884454	AT1G22320.1 tRNA  gene_syn 61385.TRNA-MET-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Met (anticodon: CAT)  transcript_id AT1G22320.1  
At1g22330	chr1:007886693	0.0	W/7886693-7886878,7886951-7887074,7887452-7887569,7887991-7888024,7888317-7888623,7889135-7889241	AT1G22330.1 CDS  gene_syn T16E15.6, T16E15_6  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA binding / nucleic acid binding / nucleotide binding  note RNA binding / nucleic acid binding / nucleotide binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G78260.1); Has 15716 Blast hits to 12796 proteins in 588 species: Archae - 4; Bacteria - 780; Metazoa - 9187; Fungi - 1619; Plants - 2589; Viruses - 0; Other Eukaryotes - 1537 (source: NCBI BLink).  protein_id AT1G22330.1p  transcript_id AT1G22330.1  protein_id AT1G22330.1p  transcript_id AT1G22330.1  
At1g22340	chr1:007890464	0.0	C/7890464-7891410,7891574-7892090	AT1G22340.1 CDS  gene_syn AtUGT85A7, T16E15.5, T16E15_5, UDP-glucosyl transferase 85A7  gene AtUGT85A7  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A7 (UDP-glucosyl transferase 85A7); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A7 (AtUGT85A7); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G22360.1); Has 4778 Blast hits to 4734 proteins in 303 species: Archae - 0; Bacteria - 103; Metazoa - 1814; Fungi - 14; Plants - 2761; Viruses - 56; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G22340.1p  transcript_id AT1G22340.1  protein_id AT1G22340.1p  transcript_id AT1G22340.1  
At1g22350	chr1:007892878	0.0	C/7892878-7894498	AT1G22350.1 pseudogenic_transcript  pseudo  gene_syn T16E15.4  note pseudogene, putative UDP-glucose glucosyltransferase, similar to UDP-glucose glucosyltransferase GI:3928543 from (Arabidopsis thaliana); blastp match of 56% identity and 2.1e-151 P-value to GP|19911203|dbj|BAB86928.1||AB070753 glucosyltransferase-10 {Vigna angularis}  
At1g22360	chr1:007895068	0.0	C/7895068-7895211,7895248-7896005,7897020-7897527	AT1G22360.2 CDS  gene_syn AtUGT85A2, UDP-glucosyl transferase 85A2  gene AtUGT85A2  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A2 (AtUGT85A2); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase/ transcription factor/ transferase, transferring glycosyl groups (TAIR:AT1G22380.1); Has 4749 Blast hits to 4697 proteins in 271 species: Archae - 0; Bacteria - 21; Metazoa - 1847; Fungi - 10; Plants - 2772; Viruses - 69; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G22360.2p  transcript_id AT1G22360.2  protein_id AT1G22360.2p  transcript_id AT1G22360.2  
At1g22360	chr1:007895068	0.0	C/7895068-7896005,7897020-7897527	AT1G22360.1 CDS  gene_syn AtUGT85A2, UDP-glucosyl transferase 85A2  gene AtUGT85A2  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A2 (AtUGT85A2); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase/ transcription factor/ transferase, transferring glycosyl groups (TAIR:AT1G22380.1); Has 4893 Blast hits to 4835 proteins in 290 species: Archae - 0; Bacteria - 46; Metazoa - 1935; Fungi - 10; Plants - 2777; Viruses - 95; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G22360.1p  transcript_id AT1G22360.1  protein_id AT1G22360.1p  transcript_id AT1G22360.1  
At1g22370	chr1:007898116	0.0	C/7898116-7899038,7899363-7899879	AT1G22370.2 CDS  gene_syn AtUGT85A5, T16E15.2, T16E15_2, UDP-glucosyl transferase 85A5  gene AtUGT85A5  go_process metabolic process|GO:0008152||IEA  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A5 (UDP-glucosyl transferase 85A5); glucuronosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A5 (AtUGT85A5); FUNCTIONS IN: transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G22360.1); Has 4997 Blast hits to 4937 proteins in 324 species: Archae - 0; Bacteria - 90; Metazoa - 1957; Fungi - 23; Plants - 2787; Viruses - 109; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G22370.2p  transcript_id AT1G22370.2  protein_id AT1G22370.2p  transcript_id AT1G22370.2  
At1g22370	chr1:007898116	0.0	C/7898116-7899045	AT1G22370.1 CDS  gene_syn AtUGT85A5, T16E15.2, T16E15_2, UDP-glucosyl transferase 85A5  gene AtUGT85A5  go_process metabolic process|GO:0008152||IEA  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A5 (UDP-glucosyl transferase 85A5); glucuronosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A5 (AtUGT85A5); FUNCTIONS IN: transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A2 (UDP-glucosyl transferase 85A2); UDP-glycosyltransferase/ glucuronosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT1G22360.1); Has 4818 Blast hits to 4797 proteins in 308 species: Archae - 0; Bacteria - 63; Metazoa - 1955; Fungi - 16; Plants - 2645; Viruses - 109; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G22370.1p  transcript_id AT1G22370.1  protein_id AT1G22370.1p  transcript_id AT1G22370.1  
At1g22380	chr1:007900522	0.0	C/7900522-7901471,7901816-7902332	AT1G22380.1 CDS  gene_syn AtUGT85A3, UDP-glucosyl transferase 85A3  gene AtUGT85A3  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase/ transcription factor/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 85A3 (AtUGT85A3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, transcription factor activity, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT85A1; UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucuronosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G22400.1); Has 4834 Blast hits to 4785 proteins in 286 species: Archae - 0; Bacteria - 31; Metazoa - 1905; Fungi - 10; Plants - 2764; Viruses - 95; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G22380.1p  transcript_id AT1G22380.1  protein_id AT1G22380.1p  transcript_id AT1G22380.1  
At1g22400	chr1:007903851	0.0	C/7903851-7904803,7906091-7906607	AT1G22400.1 CDS  gene_syn ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, ATUGT85A1, F12K8.26, F12K8_26, UGT85A1  gene UGT85A1  go_process metabolic process|GO:0008152||IEA  go_component cellular_component|GO:0005575||ND  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function glucuronosyltransferase activity|GO:0015020|17498920|ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function trans-zeatin O-beta-D-glucosyltransferase activity|GO:0050403|15342621|IDA  go_function cis-zeatin O-beta-D-glucosyltransferase activity|GO:0050502|15342621|IDA  product UGT85A1; UDP-glycosyltransferase/ cis-zeatin O-beta-D-glucosyltransferase/ glucuronosyltransferase/ trans-zeatin O-beta-D-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note UGT85A1; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: AtUGT85A3 (UDP-glucosyl transferase 85A3); glucuronosyltransferase/ transcription factor/ transferase, transferring glycosyl groups (TAIR:AT1G22380.1); Has 5011 Blast hits to 4962 proteins in 308 species: Archae - 0; Bacteria - 100; Metazoa - 2040; Fungi - 16; Plants - 2764; Viruses - 58; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G22400.1p  transcript_id AT1G22400.1  protein_id AT1G22400.1p  transcript_id AT1G22400.1  
At1g22403	chr1:007908569	0.0	C/7908569-7909509	AT1G22403.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G22403.1  
At1g22410	chr1:007912120	0.0	W/7912120-7912644,7912723-7913000,7913480-7913756,7913838-7914083,7914485-7914742	AT1G22410.1 CDS  gene_syn F12K8.24, F12K8_24  go_component membrane|GO:0016020|17432890|IDA  go_function 3-deoxy-7-phosphoheptulonate synthase activity|GO:0003849||IEA  go_process aromatic amino acid family biosynthetic process|GO:0009073|1967256|TAS  product 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative  note 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative; FUNCTIONS IN: 3-deoxy-7-phosphoheptulonate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1); 3-deoxy-7-phosphoheptulonate synthase (TAIR:AT4G39980.1); Has 3140 Blast hits to 3125 proteins in 395 species: Archae - 0; Bacteria - 662; Metazoa - 0; Fungi - 68; Plants - 129; Viruses - 0; Other Eukaryotes - 2281 (source: NCBI BLink).  protein_id AT1G22410.1p  transcript_id AT1G22410.1  protein_id AT1G22410.1p  transcript_id AT1G22410.1  
At1g22420	chr1:007916076	0.0	C/7916076-7917518	AT1G22420.1 CDS  gene_syn F12K8.23, F12K8_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5216 Blast hits to 3542 proteins in 362 species: Archae - 14; Bacteria - 378; Metazoa - 2513; Fungi - 666; Plants - 731; Viruses - 191; Other Eukaryotes - 723 (source: NCBI BLink).  protein_id AT1G22420.1p  transcript_id AT1G22420.1  protein_id AT1G22420.1p  transcript_id AT1G22420.1  
At1g22430	chr1:007919235	0.0	W/7919235-7919426,7919509-7919555,7919706-7920034,7920184-7920266,7920423-7920498,7920828-7920892,7921033-7921128,7921225-7921386,7921478-7921594	AT1G22430.1 CDS  gene_syn F12K8.22, F12K8_22  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT4G22110.2); Has 21551 Blast hits to 21541 proteins in 1947 species: Archae - 376; Bacteria - 11625; Metazoa - 1154; Fungi - 1680; Plants - 3074; Viruses - 3; Other Eukaryotes - 3639 (source: NCBI BLink).  protein_id AT1G22430.1p  transcript_id AT1G22430.1  protein_id AT1G22430.1p  transcript_id AT1G22430.1  
At1g22430	chr1:007919235	0.0	W/7919235-7919426,7919509-7919555,7919706-7920034,7920184-7920266,7920423-7920503,7920833-7920892,7921033-7921128,7921225-7921386,7921478-7921594	AT1G22430.2 CDS  gene_syn F12K8.22, F12K8_22  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT4G22110.2); Has 21551 Blast hits to 21541 proteins in 1947 species: Archae - 376; Bacteria - 11625; Metazoa - 1154; Fungi - 1680; Plants - 3074; Viruses - 3; Other Eukaryotes - 3639 (source: NCBI BLink).  protein_id AT1G22430.2p  transcript_id AT1G22430.2  protein_id AT1G22430.2p  transcript_id AT1G22430.2  
At1g22440	chr1:007922560	0.0	W/7922560-7922745,7922831-7922877,7922973-7923301,7923449-7923531,7923650-7923725,7924020-7924084,7924188-7924283,7924367-7924528,7924643-7924759	AT1G22440.1 CDS  gene_syn F12K8.21, F12K8_21  go_process metabolic process|GO:0008152||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  product alcohol dehydrogenase, putative  note alcohol dehydrogenase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase, putative (TAIR:AT1G22430.2); Has 20692 Blast hits to 20680 proteins in 1943 species: Archae - 364; Bacteria - 11280; Metazoa - 1113; Fungi - 1582; Plants - 3028; Viruses - 3; Other Eukaryotes - 3322 (source: NCBI BLink).  protein_id AT1G22440.1p  transcript_id AT1G22440.1  protein_id AT1G22440.1p  transcript_id AT1G22440.1  
At1g22450	chr1:007925447	0.0	W/7925447-7925488,7925951-7926262,7926405-7926487,7926575-7926656,7926862-7926918	AT1G22450.1 CDS  gene_syn ATCOX6B2, COX6B, CYTOCHROME C OXIDASE 6B, CYTOCHROME C OXIDASE 6B2, F12K8.20, F12K8_20, SUBUNIT 6B OF CYTOCHROME C OXIDASE  gene COX6B  function subunit 6b of cytochrome c oxidase  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component thylakoid|GO:0009579|14729914|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function cytochrome-c oxidase activity|GO:0004129||IEA  go_component mitochondrion|GO:0005739|11250078|ISS  go_component mitochondrion|GO:0005739||ISS  go_process oxidation reduction|GO:0055114|11250078|ISS  go_function cytochrome-c oxidase activity|GO:0004129||ISS  product COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase  note CYTOCHROME C OXIDASE 6B (COX6B); FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: oxidation reduction, response to salt stress; LOCATED IN: thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit 6b, putative (TAIR:AT5G57815.1); Has 8399 Blast hits to 3768 proteins in 415 species: Archae - 32; Bacteria - 792; Metazoa - 2407; Fungi - 665; Plants - 240; Viruses - 125; Other Eukaryotes - 4138 (source: NCBI BLink).  protein_id AT1G22450.1p  transcript_id AT1G22450.1  protein_id AT1G22450.1p  transcript_id AT1G22450.1  
At1g22460	chr1:007927530	0.0	C/7927530-7927665,7927745-7927840,7927926-7928110,7928183-7928396,7928475-7928608,7928688-7928997,7929102-7929190,7929287-7929354,7929436-7929535,7929773-7929871,7929985-7930089,7930190-7930351	AT1G22460.1 CDS  gene_syn F12K8.19, F12K8_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64600.1); Has 432 Blast hits to 424 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 432; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22460.1p  transcript_id AT1G22460.1  protein_id AT1G22460.1p  transcript_id AT1G22460.1  
At1g22470	chr1:007932908	0.0	C/7932908-7933348	AT1G22470.1 CDS  gene_syn F12K8.18, F12K8_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72240.1); Has 2310 Blast hits to 192 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 969; Fungi - 80; Plants - 43; Viruses - 2; Other Eukaryotes - 1208 (source: NCBI BLink).  protein_id AT1G22470.1p  transcript_id AT1G22470.1  protein_id AT1G22470.1p  transcript_id AT1G22470.1  
At1g22480	chr1:007934232	0.0	C/7934232-7934611,7934910-7935054	AT1G22480.1 CDS  gene_syn F12K8.17, F12K8_17  go_function copper ion binding|GO:0005507||IEA  go_function electron carrier activity|GO:0009055||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function copper ion binding|GO:0005507||ISS  product plastocyanin-like domain-containing protein  note plastocyanin-like domain-containing protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: shoot apex, embryo, inflorescence meristem, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin-like domain-containing protein (TAIR:AT1G72230.1); Has 781 Blast hits to 777 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 770; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G22480.1p  transcript_id AT1G22480.1  protein_id AT1G22480.1p  transcript_id AT1G22480.1  
At1g22490	chr1:007938448	0.0	C/7938448-7938534,7939196-7939585,7940052-7940489	AT1G22490.1 CDS  gene_syn F12K8.16, F12K8_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (bHLH096) (TAIR:AT1G72210.1); Has 860 Blast hits to 857 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 23; Plants - 794; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G22490.1p  transcript_id AT1G22490.1  protein_id AT1G22490.1p  transcript_id AT1G22490.1  
At1g22500	chr1:007949581	0.0	W/7949581-7950726	AT1G22500.1 CDS  gene_syn F12K8.15, F12K8_15  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: stem, cotyledon, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G72200.1); Has 6507 Blast hits to 6490 proteins in 222 species: Archae - 0; Bacteria - 2; Metazoa - 2224; Fungi - 542; Plants - 2639; Viruses - 59; Other Eukaryotes - 1041 (source: NCBI BLink).  protein_id AT1G22500.1p  transcript_id AT1G22500.1  protein_id AT1G22500.1p  transcript_id AT1G22500.1  
At1g22510	chr1:007951003	0.0	C/7951003-7951115,7951217-7951268,7951413-7951514,7951965-7952164,7952507-7952597	AT1G22510.1 CDS  gene_syn F12K8.14, F12K8_14  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G72175.1); Has 530 Blast hits to 530 proteins in 91 species: Archae - 0; Bacteria - 15; Metazoa - 391; Fungi - 31; Plants - 40; Viruses - 2; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G22510.1p  transcript_id AT1G22510.1  protein_id AT1G22510.1p  transcript_id AT1G22510.1  
At1g22520	chr1:007952996	0.0	C/7952996-7953170,7953278-7953313,7953693-7953721,7953794-7953963,7954175-7954304	AT1G22520.2 CDS  gene_syn F12K8.27, F12K8_27  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF543 (InterPro:IPR007512); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72170.1).  protein_id AT1G22520.2p  transcript_id AT1G22520.2  protein_id AT1G22520.2p  transcript_id AT1G22520.2  
At1g22520	chr1:007953299	0.0	C/7953299-7953313,7953809-7953963,7954175-7954304	AT1G22520.1 CDS  gene_syn F12K8.27, F12K8_27  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF543 (InterPro:IPR007512); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72170.1); Has 71 Blast hits to 71 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G22520.1p  transcript_id AT1G22520.1  protein_id AT1G22520.1p  transcript_id AT1G22520.1  
At1g22530	chr1:007955773	0.0	C/7955773-7956018,7956351-7956486,7956581-7956708,7956785-7958326	AT1G22530.1 CDS  gene_syn F12K8.13, F12K8_13, PATELLIN 2, PATL2  gene PATL2  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product PATL2 (PATELLIN 2); transporter  note PATELLIN 2 (PATL2); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: PATL1 (PATELLIN 1); transporter (TAIR:AT1G72150.1); Has 52283 Blast hits to 28572 proteins in 1631 species: Archae - 214; Bacteria - 8910; Metazoa - 20172; Fungi - 6486; Plants - 2360; Viruses - 305; Other Eukaryotes - 13836 (source: NCBI BLink).  protein_id AT1G22530.1p  transcript_id AT1G22530.1  protein_id AT1G22530.1p  transcript_id AT1G22530.1  
At1g22540	chr1:007964202	0.0	W/7964202-7964325,7964442-7964659,7964805-7965337,7965424-7966222	AT1G22540.1 CDS  gene_syn F12K8.12, F12K8_12  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G72140.1); Has 4482 Blast hits to 4367 proteins in 786 species: Archae - 0; Bacteria - 2034; Metazoa - 529; Fungi - 315; Plants - 1121; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink).  protein_id AT1G22540.1p  transcript_id AT1G22540.1  protein_id AT1G22540.1p  transcript_id AT1G22540.1  
At1g22550	chr1:007966608	0.0	C/7966608-7967415,7967494-7968038,7968122-7968339,7968429-7968552	AT1G22550.1 CDS  gene_syn F12K8.11, F12K8_11  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G22570.1); Has 4470 Blast hits to 4427 proteins in 803 species: Archae - 0; Bacteria - 2095; Metazoa - 435; Fungi - 295; Plants - 1111; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink).  protein_id AT1G22550.1p  transcript_id AT1G22550.1  protein_id AT1G22550.1p  transcript_id AT1G22550.1  
At1g22560	chr1:007970248	0.0	W/7970248-7974396	AT1G22560.1 mRNA_TE_gene  pseudo  gene_syn F12K8.9  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 9.4e-20 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)  
At1g22570	chr1:007976620	0.0	C/7976620-7977415,7977495-7978054,7978151-7978368,7978450-7978573	AT1G22570.1 CDS  gene_syn F12K8.8, F12K8_8  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_function transporter activity|GO:0005215||ISS  product proton-dependent oligopeptide transport (POT) family protein  note proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G22550.1); Has 4548 Blast hits to 4472 proteins in 799 species: Archae - 0; Bacteria - 2123; Metazoa - 432; Fungi - 311; Plants - 1125; Viruses - 0; Other Eukaryotes - 557 (source: NCBI BLink).  protein_id AT1G22570.1p  transcript_id AT1G22570.1  protein_id AT1G22570.1p  transcript_id AT1G22570.1  
At1g22580	chr1:007980709	0.0	W/7980709-7981263	AT1G22580.1 mRNA_TE_gene  pseudo  gene_syn F12K8.30  note Transposable element gene, pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 32% identity and 1.1e-13 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}  
At1g22590	chr1:007981849	0.0	W/7981849-7981874,7982045-7982113,7983720-7984002	AT1G22590.1 CDS  gene_syn AGAMOUS-LIKE 87, AGL87, F12K8.7, F12K8_7  gene AGL87  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product MADS-box family protein  note AGAMOUS-LIKE 87 (AGL87); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G22590.1p  transcript_id AT1G22590.1  protein_id AT1G22590.1p  transcript_id AT1G22590.1  
At1g22590	chr1:007983511	0.0	W/7983511-7984002	AT1G22590.2 CDS  gene_syn AGAMOUS-LIKE 87, AGL87, F12K8.7, F12K8_7  gene AGL87  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product MADS-box family protein  note AGAMOUS-LIKE 87 (AGL87); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL80 (AGAMOUS-LIKE 80); DNA binding / transcription factor (TAIR:AT5G48670.1); Has 3342 Blast hits to 3341 proteins in 419 species: Archae - 0; Bacteria - 0; Metazoa - 418; Fungi - 178; Plants - 2704; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G22590.2p  transcript_id AT1G22590.2  protein_id AT1G22590.2p  transcript_id AT1G22590.2  
At1g22600	chr1:007987308	0.0	C/7987308-7987580,7988303-7989187	AT1G22600.1 CDS  gene_syn F12K8.5, F12K8_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell, embryo, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT1G72100.1); Has 126 Blast hits to 123 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 8; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22600.1p  transcript_id AT1G22600.1  protein_id AT1G22600.1p  transcript_id AT1G22600.1  
At1g22610	chr1:007994478	0.0	W/7994478-7997567	AT1G22610.1 CDS  gene_syn F12K8.4, F12K8_4  go_component chloroplast|GO:0009507|15028209|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal, plant (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT3G57880.1); Has 7123 Blast hits to 3983 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 5329; Fungi - 252; Plants - 1142; Viruses - 0; Other Eukaryotes - 400 (source: NCBI BLink).  protein_id AT1G22610.1p  transcript_id AT1G22610.1  protein_id AT1G22610.1p  transcript_id AT1G22610.1  
At1g22620	chr1:007997889	0.0	C/7997889-7998140,7998234-7998345,7998533-7998718,7998907-7999119,7999309-7999419,7999713-7999834,7999923-8000307,8000444-8000578,8000651-8000784,8000874-8000971,8001096-8001283,8001507-8001583,8001661-8001883,8002010-8002175,8002265-8002469,8002656-8002787	AT1G22620.1 CDS  gene_syn ATSAC1, F12K8.3, suppressor of actin 1  gene ATSAC1  function SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization.  go_component Golgi apparatus|GO:0005794|15805481|IDA  go_process cytoskeleton organization|GO:0007010|15805481|IMP  go_process unidimensional cell growth|GO:0009826|15805481|IMP  go_process plant-type cell wall biogenesis|GO:0009832|15805481|IMP  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439|15805481|IDA  go_function phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|GO:0004439||ISS  product ATSAC1 (suppressor of actin 1); phosphatidylinositol-4,5-bisphosphate 5-phosphatase  note suppressor of actin 1 (ATSAC1); FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; INVOLVED IN: plant-type cell wall biogenesis, cytoskeleton organization, unidimensional cell growth; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: phosphoinositide phosphatase family protein (TAIR:AT3G14205.1); Has 1734 Blast hits to 1173 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 764; Fungi - 509; Plants - 169; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).  protein_id AT1G22620.1p  transcript_id AT1G22620.1  protein_id AT1G22620.1p  transcript_id AT1G22620.1  
At1g22630	chr1:008003487	0.0	W/8003487-8003624,8003717-8003776,8003927-8003973,8004080-8004167	AT1G22630.1 CDS  gene_syn F12K8.2  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 63 proteins in 26 species: Archae - 0; Bacteria - 11; Metazoa - 26; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G22630.1p  transcript_id AT1G22630.1  protein_id AT1G22630.1p  transcript_id AT1G22630.1  
At1g22640	chr1:008006289	0.0	W/8006289-8006421,8006499-8006628,8006709-8007219	AT1G22640.1 CDS  gene_syn ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, ATMYB3, MYB DOMAIN PROTEIN 3, MYB3, T22J18.19, T22J18_19, TRANSCRIPTION FACTOR MYB3  gene MYB3  function MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression  go_process regulation of transcription, DNA-dependent|GO:0006355|9839469|ISS  go_process response to wounding|GO:0009611|12068110|IEP  go_process response to salt stress|GO:0009651|16463103|IEP  go_process response to ethylene stimulus|GO:0009723|16463103|IEP  go_process response to auxin stimulus|GO:0009733|16463103|IEP  go_process response to abscisic acid stimulus|GO:0009737|16463103|IEP  go_process response to gibberellin stimulus|GO:0009739|16463103|IEP  go_process response to salicylic acid stimulus|GO:0009751|16463103|IEP  go_process response to jasmonic acid stimulus|GO:0009753|16463103|IEP  go_process cinnamic acid biosynthetic process|GO:0009800|12068110|TAS  go_process negative regulation of metabolic process|GO:0009892|12068110|TAS  go_process response to cadmium ion|GO:0046686|16463103|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product MYB3 (MYB DOMAIN PROTEIN 3); DNA binding / transcription factor  note MYB DOMAIN PROTEIN 3 (MYB3); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 12 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: ATMYB6; DNA binding / transcription factor (TAIR:AT4G09460.1); Has 6455 Blast hits to 5987 proteins in 356 species: Archae - 0; Bacteria - 0; Metazoa - 602; Fungi - 316; Plants - 3895; Viruses - 3; Other Eukaryotes - 1639 (source: NCBI BLink).  protein_id AT1G22640.1p  transcript_id AT1G22640.1  protein_id AT1G22640.1p  transcript_id AT1G22640.1  
At1g22650	chr1:008013529	0.0	C/8013529-8013821,8014120-8014678,8014799-8015230,8015327-8015647	AT1G22650.1 CDS  gene_syn T22J18.18, T22J18_18  go_process sucrose catabolic process, using beta-fructofuranosidase|GO:0019575||IEA  go_function catalytic activity|GO:0003824||IEA  go_component cellular_component|GO:0005575||ND  go_function beta-fructofuranosidase activity|GO:0004564||ISS  product beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative  note beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative; FUNCTIONS IN: catalytic activity, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using beta-fructofuranosidase; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative (TAIR:AT4G09510.1); Has 529 Blast hits to 528 proteins in 80 species: Archae - 0; Bacteria - 109; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G22650.1p  transcript_id AT1G22650.1  protein_id AT1G22650.1p  transcript_id AT1G22650.1  
At1g22651	chr1:008016126	0.0	W/8016126-8016287	AT1G22651.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G22651.1p  transcript_id AT1G22651.1  protein_id AT1G22651.1p  transcript_id AT1G22651.1  
At1g22660	chr1:008017410	0.0	W/8017410-8017769,8017869-8017999,8018085-8018202,8018358-8018410,8018517-8018566,8018648-8018746,8018873-8018982,8019073-8019200,8019306-8019372,8019484-8019567,8019662-8019724,8019983-8020160,8020367-8020540,8020884-8020981,8021434-8021538	AT1G22660.1 CDS  gene_syn T22J18.17, T22J18_17  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process tRNA processing|GO:0008033||ISS  go_function tRNA adenylyltransferase activity|GO:0004810||ISS  product tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative  note tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 5671 Blast hits to 5668 proteins in 1396 species: Archae - 2; Bacteria - 3283; Metazoa - 115; Fungi - 175; Plants - 54; Viruses - 8; Other Eukaryotes - 2034 (source: NCBI BLink).  protein_id AT1G22660.1p  transcript_id AT1G22660.1  protein_id AT1G22660.1p  transcript_id AT1G22660.1  
At1g22660	chr1:008017410	0.0	W/8017410-8017769,8017869-8017999,8018085-8018202,8018358-8018410,8018517-8018566,8018648-8018746,8018873-8018982,8019073-8019200,8019306-8019372,8019484-8019567,8019662-8019724,8019983-8020160,8020367-8020540,8020884-8020981,8021440-8021538	AT1G22660.2 CDS  gene_syn T22J18.17, T22J18_17  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process tRNA processing|GO:0008033||ISS  go_function tRNA adenylyltransferase activity|GO:0004810||ISS  product tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative  note tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 5671 Blast hits to 5668 proteins in 1396 species: Archae - 2; Bacteria - 3283; Metazoa - 115; Fungi - 175; Plants - 54; Viruses - 8; Other Eukaryotes - 2034 (source: NCBI BLink).  protein_id AT1G22660.2p  transcript_id AT1G22660.2  protein_id AT1G22660.2p  transcript_id AT1G22660.2  
At1g22670	chr1:008021854	0.0	C/8021854-8022365,8022447-8022845,8022936-8023163,8023387-8023516	AT1G22670.1 CDS  gene_syn T22J18.16, T22J18_16  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function peptidase activity|GO:0008233||ISS  go_function zinc ion binding|GO:0008270||ISS  product protease-associated zinc finger (C3HC4-type RING finger) family protein  note protease-associated zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: peptidase activity, protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protease-associated zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G71980.1); Has 5768 Blast hits to 5735 proteins in 231 species: Archae - 0; Bacteria - 85; Metazoa - 1969; Fungi - 415; Plants - 2559; Viruses - 4; Other Eukaryotes - 736 (source: NCBI BLink).  protein_id AT1G22670.1p  transcript_id AT1G22670.1  protein_id AT1G22670.1p  transcript_id AT1G22670.1  
At1g22680	chr1:008025503	0.0	C/8025503-8026060	AT1G22680.1 CDS  gene_syn T22J18.15, T22J18_15  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71970.1); Has 25 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22680.1p  transcript_id AT1G22680.1  protein_id AT1G22680.1p  transcript_id AT1G22680.1  
At1g22690	chr1:008027328	0.0	W/8027328-8027390,8027482-8027535,8027624-8027684,8027780-8027961	AT1G22690.1 CDS  gene_syn T22J18.14, T22J18_14  go_component endomembrane system|GO:0012505||IEA  go_process response to gibberellin stimulus|GO:0009739||ISS  go_function molecular_function|GO:0003674||ND  product gibberellin-responsive protein, putative  note gibberellin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GASA2 (GAST1 PROTEIN HOMOLOG 2) (TAIR:AT4G09610.1); Has 246 Blast hits to 246 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22690.1p  transcript_id AT1G22690.1  protein_id AT1G22690.1p  transcript_id AT1G22690.1  
At1g22700	chr1:008028323	0.0	C/8028323-8028607,8028687-8028833,8029086-8029289	AT1G22700.3 CDS  gene_syn T22J18.13, T22J18_13  function Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_process photosystem I assembly|GO:0048564|16679416|IMP  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (TAIR:AT3G11540.1); Has 4116 Blast hits to 2816 proteins in 403 species: Archae - 63; Bacteria - 1221; Metazoa - 347; Fungi - 98; Plants - 140; Viruses - 0; Other Eukaryotes - 2247 (source: NCBI BLink).  protein_id AT1G22700.3p  transcript_id AT1G22700.3  protein_id AT1G22700.3p  transcript_id AT1G22700.3  
At1g22700	chr1:008028323	0.0	C/8028323-8028607,8028687-8028833,8029086-8029384,8029488-8029524,8029756-8029878	AT1G22700.2 CDS  gene_syn T22J18.13, T22J18_13  function Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function binding|GO:0005488||IEA  go_process photosystem I assembly|GO:0048564|16679416|IMP  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (TAIR:AT3G11540.1); Has 4131 Blast hits to 2824 proteins in 406 species: Archae - 65; Bacteria - 1230; Metazoa - 347; Fungi - 98; Plants - 140; Viruses - 0; Other Eukaryotes - 2251 (source: NCBI BLink).  protein_id AT1G22700.2p  transcript_id AT1G22700.2  protein_id AT1G22700.2p  transcript_id AT1G22700.2  
At1g22700	chr1:008028323	0.0	C/8028323-8028607,8028687-8028833,8029086-8029399,8029488-8029524,8029756-8029878	AT1G22700.1 CDS  gene_syn T22J18.13, T22J18_13  function Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_function binding|GO:0005488||IEA  go_process photosystem I assembly|GO:0048564|16679416|IMP  product tetratricopeptide repeat (TPR)-containing protein  note tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups (TAIR:AT3G11540.1); Has 4129 Blast hits to 2824 proteins in 406 species: Archae - 65; Bacteria - 1230; Metazoa - 347; Fungi - 98; Plants - 140; Viruses - 0; Other Eukaryotes - 2249 (source: NCBI BLink).  protein_id AT1G22700.1p  transcript_id AT1G22700.1  protein_id AT1G22700.1p  transcript_id AT1G22700.1  
At1g22710	chr1:008030911	0.0	C/8030911-8031084,8031174-8031217,8031505-8031568,8031714-8032970	AT1G22710.1 CDS  gene_syn ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, ATSUC2, SUC2, SUCROSE TRANSPORTER 1, SUCROSE-H+ SYMPORTER, SUCROSE-PROTON SYMPORTER 2, SUT1, T22J18.12, T22J18_12  gene SUC2  function Encodes for a high-affinity transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transport a wide range of physiological and synthetic glucose conjugates with both & 945;- or & 946;-linkage.  go_component plasma membrane|GO:0005886|11087840|TAS  go_component plasma membrane|GO:0005886|12954621|IDA  go_component membrane|GO:0016020||ISS  go_process phloem loading|GO:0009915||NAS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function sucrose:hydrogen symporter activity|GO:0008506|16091371|TAS  go_function sucrose:hydrogen symporter activity|GO:0008506||ISS  go_function sucrose transmembrane transporter activity|GO:0008515|12954621|IGI  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transmembrane transporter/ sucrose transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter  note SUCROSE-PROTON SYMPORTER 2 (SUC2); FUNCTIONS IN: sucrose transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: phloem loading; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: SUC1 (Sucrose-proton symporter 1); carbohydrate transmembrane transporter/ sucrose:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT1G71880.1); Has 1581 Blast hits to 1475 proteins in 326 species: Archae - 22; Bacteria - 459; Metazoa - 390; Fungi - 133; Plants - 254; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).  protein_id AT1G22710.1p  transcript_id AT1G22710.1  protein_id AT1G22710.1p  transcript_id AT1G22710.1  
At1g22720	chr1:008044232	0.0	C/8044232-8044694,8045392-8045527,8045605-8045665	AT1G22720.1 CDS  gene_syn T22J18.11, T22J18_11  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_function kinase activity|GO:0016301||ISS  product wall-associated kinase, putative  note wall-associated kinase, putative; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: WAK2; ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G21270.1); Has 10151 Blast hits to 10021 proteins in 295 species: Archae - 0; Bacteria - 9; Metazoa - 1228; Fungi - 25; Plants - 8686; Viruses - 20; Other Eukaryotes - 183 (source: NCBI BLink).  protein_id AT1G22720.1p  transcript_id AT1G22720.1  protein_id AT1G22720.1p  transcript_id AT1G22720.1  
At1g22730	chr1:008046511	0.0	W/8046511-8046655,8046741-8046814,8046907-8048769	AT1G22730.1 CDS  gene_syn T22J18.10, T22J18_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MA3 domain-containing protein  note MA3 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT5G63190.2); Has 1475 Blast hits to 573 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 1070; Fungi - 4; Plants - 294; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G22730.1p  transcript_id AT1G22730.1  protein_id AT1G22730.1p  transcript_id AT1G22730.1  
At1g22740	chr1:008049247	0.0	W/8049247-8049299,8049393-8049419,8049540-8049639,8049738-8049884,8049981-8050061,8050145-8050290,8050437-8050494	AT1G22740.1 CDS  gene_syn ATRABG3B, RAB7, RAB75, RABG3B, T22J18.9, T22J18_9  gene RABG3B  function GTP-binding protein Rab7  go_component vacuole|GO:0005773|15539469|IDA  go_process intracellular protein transport|GO:0006886||IEA  go_process nucleocytoplasmic transport|GO:0006913||IEA  go_process signal transduction|GO:0007165||IEA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525|9369203|ISS  go_function GTP binding|GO:0005525||ISS  product RABG3B; GTP binding  note RABG3B; FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Ras small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related GTP-binding protein, putative (TAIR:AT4G09720.1); Has 20640 Blast hits to 20615 proteins in 592 species: Archae - 15; Bacteria - 91; Metazoa - 11549; Fungi - 2386; Plants - 1767; Viruses - 19; Other Eukaryotes - 4813 (source: NCBI BLink).  protein_id AT1G22740.1p  transcript_id AT1G22740.1  protein_id AT1G22740.1p  transcript_id AT1G22740.1  
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052606-8052618	AT1G22750.1 CDS  gene_syn T22J18.8, T22J18_8  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 148 Blast hits to 129 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G22750.1p  transcript_id AT1G22750.1  protein_id AT1G22750.1p  transcript_id AT1G22750.1  
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052610-8052631	AT1G22750.2 CDS  gene_syn T22J18.8, T22J18_8  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 148 Blast hits to 129 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G22750.2p  transcript_id AT1G22750.2  protein_id AT1G22750.2p  transcript_id AT1G22750.2  
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052615-8052618	AT1G22750.3 CDS  gene_syn T22J18.8, T22J18_8  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 148 Blast hits to 129 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G22750.3p  transcript_id AT1G22750.3  protein_id AT1G22750.3p  transcript_id AT1G22750.3  
At1g22750	chr1:008050911	0.0	W/8050911-8051044,8051148-8051199,8051288-8051361,8051455-8051556,8051830-8051973,8052062-8052113,8052233-8052306,8052391-8052480,8052663-8052714	AT1G22750.4 CDS  gene_syn T22J18.8, T22J18_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 148 Blast hits to 129 proteins in 10 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G22750.4p  transcript_id AT1G22750.4  protein_id AT1G22750.4p  transcript_id AT1G22750.4  
At1g22760	chr1:008055599	0.0	W/8055599-8055902,8056417-8057198,8057291-8057368,8057455-8057544,8057636-8057932,8058004-8058219,8058584-8058799	AT1G22760.1 CDS  gene_syn PAB3, POLY(A) BINDING PROTEIN 3, T22J18.7, T22J18_7  gene PAB3  function Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs.  go_process mRNA processing|GO:0006397|11516954|IGI  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding / translation initiation factor  note POLY(A) BINDING PROTEIN 3 (PAB3); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: mRNA processing; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor (TAIR:AT1G71770.1); Has 40192 Blast hits to 17957 proteins in 650 species: Archae - 22; Bacteria - 1877; Metazoa - 23025; Fungi - 4635; Plants - 5674; Viruses - 0; Other Eukaryotes - 4959 (source: NCBI BLink).  protein_id AT1G22760.1p  transcript_id AT1G22760.1  protein_id AT1G22760.1p  transcript_id AT1G22760.1  
At1g22767	chr1:008061042	0.0	C/8061042-8061176	AT1G22767.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G22767.1p  transcript_id AT1G22767.1  protein_id AT1G22767.1p  transcript_id AT1G22767.1  
At1g22770	chr1:008062398	0.0	W/8062398-8062562,8062643-8062697,8062776-8062918,8063003-8063274,8063421-8063476,8063646-8063883,8064010-8064160,8064287-8064496,8064597-8066129,8066242-8066310,8066612-8066830,8066923-8067015,8067130-8067447	AT1G22770.1 CDS  gene_syn FB, GI, GIGANTEA, T22J18.6, T22J18_6  gene GI  function Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental processes, including photoperiod-mediated flowering, phytochrome B signaling, circadian clock, carbohydrate metabolism, and cold stress response. The gene s transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Forms a complex with FKF1 on the CO promoter to regulate CO expression.  go_component nucleus|GO:0005634|16006578|IDA  go_component nucleoplasm|GO:0005654|10920210|IDA  go_process circadian rhythm|GO:0007623|17872410|IDA  go_process response to cold|GO:0009409|16231185|IMP  go_process response to blue light|GO:0009637|17872410|IDA  go_process flower development|GO:0009908|10202817|TAS  go_process response to far red light|GO:0010218|18790998|IMP  go_process temperature compensation of the circadian clock|GO:0010378|16617099|IMP  go_process response to hydrogen peroxide|GO:0042542|9681039|IMP  go_process regulation of circadian rhythm|GO:0042752|16006578|IMP  go_process regulation of transcription|GO:0045449|17872410|IDA  go_process positive regulation of long-day photoperiodism, flowering|GO:0048578|16006578|IMP  product GI (GIGANTEA)  note GIGANTEA (GI); INVOLVED IN: in 10 processes; LOCATED IN: nucleoplasm, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 189 Blast hits to 188 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22770.1p  transcript_id AT1G22770.1  protein_id AT1G22770.1p  transcript_id AT1G22770.1  
At1g22780	chr1:008067990	0.0	W/8067990-8067992,8068177-8068337,8068603-8068791,8069058-8069163	AT1G22780.1 CDS  gene_syn 40S RIBOSOMAL PROTEIN S18, PFL, PFL1, POINTED FIRST LEAVES, POINTED FIRST LEAVES 1, RPS18A, T22J18.5, T22J18_5  gene PFL  function S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840|7913892|ISS  go_component small ribosomal subunit|GO:0015935||ISS  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translational initiation|GO:0006413|7913892|TAS  go_function structural constituent of ribosome|GO:0003735||ISS  product PFL (POINTED FIRST LEAVES); RNA binding / nucleic acid binding / structural constituent of ribosome  note POINTED FIRST LEAVES (PFL); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translational initiation, translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit, ribosome, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: RPS18C (S18 RIBOSOMAL PROTEIN); RNA binding / nucleic acid binding / structural constituent of ribosome (TAIR:AT4G09800.1); Has 5326 Blast hits to 5326 proteins in 1715 species: Archae - 163; Bacteria - 2773; Metazoa - 291; Fungi - 107; Plants - 309; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).  protein_id AT1G22780.1p  transcript_id AT1G22780.1  protein_id AT1G22780.1p  transcript_id AT1G22780.1  
At1g22790	chr1:008070271	0.0	W/8070271-8070851,8071223-8071292	AT1G22790.1 CDS  gene_syn T22J18.4, T22J18_4  go_component plasma membrane|GO:0005886|14506206|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22790.1p  transcript_id AT1G22790.1  protein_id AT1G22790.1p  transcript_id AT1G22790.1  
At1g22790	chr1:008070271	0.0	W/8070271-8070851,8071223-8071292	AT1G22790.2 CDS  gene_syn T22J18.4, T22J18_4  go_component plasma membrane|GO:0005886|14506206|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22790.2p  transcript_id AT1G22790.2  protein_id AT1G22790.2p  transcript_id AT1G22790.2  
At1g22800	chr1:008072020	0.0	W/8072020-8072211,8072307-8072390,8072505-8072583,8072663-8072804,8072916-8072985,8073085-8073149,8073249-8073327,8073408-8073495,8073596-8073750,8073926-8074039	AT1G22800.1 CDS  gene_syn T22J18.3, T22J18_3  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_component cellular_component|GO:0005575||ND  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); Has 1532 Blast hits to 1532 proteins in 584 species: Archae - 2; Bacteria - 950; Metazoa - 102; Fungi - 68; Plants - 20; Viruses - 0; Other Eukaryotes - 390 (source: NCBI BLink).  protein_id AT1G22800.1p  transcript_id AT1G22800.1  protein_id AT1G22800.1p  transcript_id AT1G22800.1  
At1g22810	chr1:008074535	0.0	C/8074535-8074969	AT1G22810.1 CDS  gene_syn T22J18.2, T22J18_2  function encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G71520.1); Has 3245 Blast hits to 3241 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3241; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G22810.1p  transcript_id AT1G22810.1  protein_id AT1G22810.1p  transcript_id AT1G22810.1  
At1g22830	chr1:008076921	0.0	W/8076921-8079032	AT1G22830.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G71490.1); Has 14501 Blast hits to 4721 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 33; Plants - 14173; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G22830.1p  transcript_id AT1G22830.1  protein_id AT1G22830.1p  transcript_id AT1G22830.1  
At1g22830	chr1:008076921	0.0	W/8076921-8079032	AT1G22830.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G71490.1); Has 14501 Blast hits to 4721 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 33; Plants - 14173; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).  protein_id AT1G22830.2p  transcript_id AT1G22830.2  protein_id AT1G22830.2p  transcript_id AT1G22830.2  
At1g22840	chr1:008079384	0.0	W/8079384-8079495,8079975-8080108,8080188-8080286	AT1G22840.1 CDS  gene_syn APOCYTOCHROME C-A, ATCYTC-A, CYTC-1, CYTOCHROME C-1, CYTOCHROME C-A, F19G10.20, F19G10_20  gene CYTC-1  function Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers.  go_component plasma membrane|GO:0005886|17151019|IDA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process cell proliferation|GO:0008283|16113211|TAS  go_function electron carrier activity|GO:0009055||ISS  product CYTC-1 (CYTOCHROME C-1); electron carrier/ heme binding / iron ion binding  note CYTOCHROME C-1 (CYTC-1); FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; INVOLVED IN: cell proliferation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c, monohaem (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTC-2 (cytochrome c-2); electron carrier/ heme binding / iron ion binding (TAIR:AT4G10040.1); Has 3350 Blast hits to 3328 proteins in 553 species: Archae - 0; Bacteria - 1029; Metazoa - 541; Fungi - 195; Plants - 114; Viruses - 0; Other Eukaryotes - 1471 (source: NCBI BLink).  protein_id AT1G22840.1p  transcript_id AT1G22840.1  protein_id AT1G22840.1p  transcript_id AT1G22840.1  
At1g22840	chr1:008079384	0.0	W/8079384-8079495,8079975-8080112,8080188-8080246	AT1G22840.2 CDS  gene_syn APOCYTOCHROME C-A, ATCYTC-A, CYTC-1, CYTOCHROME C-1, CYTOCHROME C-A, F19G10.20, F19G10_20  gene CYTC-1  function Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers.  go_component plasma membrane|GO:0005886|17151019|IDA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_process cell proliferation|GO:0008283|16113211|TAS  go_function electron carrier activity|GO:0009055||ISS  product CYTC-1 (CYTOCHROME C-1); electron carrier/ heme binding / iron ion binding  note CYTOCHROME C-1 (CYTC-1); FUNCTIONS IN: electron carrier activity, iron ion binding, heme binding; INVOLVED IN: cell proliferation; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c, monohaem (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTC-2 (cytochrome c-2); electron carrier/ heme binding / iron ion binding (TAIR:AT4G10040.1); Has 3076 Blast hits to 3060 proteins in 537 species: Archae - 0; Bacteria - 964; Metazoa - 536; Fungi - 192; Plants - 110; Viruses - 0; Other Eukaryotes - 1274 (source: NCBI BLink).  protein_id AT1G22840.2p  transcript_id AT1G22840.2  protein_id AT1G22840.2p  transcript_id AT1G22840.2  
At1g22850	chr1:008080671	0.0	C/8080671-8080718,8080915-8081025,8081395-8081461,8081700-8081923,8082014-8082106,8082204-8082256,8082378-8082816	AT1G22850.1 CDS  gene_syn F19G10.23  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03260.1); Has 3098 Blast hits to 3098 proteins in 664 species: Archae - 6; Bacteria - 1614; Metazoa - 182; Fungi - 59; Plants - 145; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI BLink).  protein_id AT1G22850.1p  transcript_id AT1G22850.1  protein_id AT1G22850.1p  transcript_id AT1G22850.1  
At1g22860	chr1:008083400	0.0	W/8083400-8084461,8084562-8084837,8085034-8085230,8085345-8085486,8086015-8086290,8086394-8086466,8086913-8086961,8087108-8087396,8087584-8087639,8087939-8088050,8088129-8088257,8088475-8088645,8088775-8088867	AT1G22860.1 CDS  gene_syn F19G10.18, F19G10_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 284 Blast hits to 266 proteins in 98 species: Archae - 0; Bacteria - 2; Metazoa - 148; Fungi - 62; Plants - 34; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).  protein_id AT1G22860.1p  transcript_id AT1G22860.1  protein_id AT1G22860.1p  transcript_id AT1G22860.1  
At1g22870	chr1:008089501	0.0	W/8089501-8089992,8090062-8090166,8090246-8090353,8090460-8090642,8090767-8090893,8090994-8091055,8091152-8091238,8091349-8091435,8091741-8091854,8092288-8092416,8092611-8092673,8092780-8092941,8093039-8093157,8093270-8094173	AT1G22870.1 CDS  gene_syn F19G10.17, F19G10_17  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function binding|GO:0005488||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Armadillo-like helical (InterPro:IPR011989), Serine/threonine protein kinase (InterPro:IPR002290), Armadillo-type fold (InterPro:IPR016024), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G71410.1); Has 19974 Blast hits to 18490 proteins in 797 species: Archae - 6; Bacteria - 1664; Metazoa - 7645; Fungi - 2706; Plants - 2294; Viruses - 20; Other Eukaryotes - 5639 (source: NCBI BLink).  protein_id AT1G22870.1p  transcript_id AT1G22870.1  protein_id AT1G22870.1p  transcript_id AT1G22870.1  
At1g22880	chr1:008095770	0.0	W/8095770-8095964,8096046-8096549,8096637-8096786,8096865-8096976,8097046-8097539	AT1G22880.1 CDS  gene_syn ARABIDOPSIS THALIANA CELLULASE 5, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ATCEL5, ATGH9B4, CEL5, CELLULASE 5, F19G10.16, F19G10_16  gene CEL5  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product CEL5 (CELLULASE 5); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note CELLULASE 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G71380.1); Has 1107 Blast hits to 1103 proteins in 187 species: Archae - 0; Bacteria - 309; Metazoa - 137; Fungi - 14; Plants - 621; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G22880.1p  transcript_id AT1G22880.1  protein_id AT1G22880.1p  transcript_id AT1G22880.1  
At1g22880	chr1:008096103	0.0	W/8096103-8096549,8096637-8096786,8096865-8096976,8097046-8097539	AT1G22880.2 CDS  gene_syn ARABIDOPSIS THALIANA CELLULASE 5, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ATCEL5, ATGH9B4, CEL5, CELLULASE 5, F19G10.16, F19G10_16  gene CEL5  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product CEL5 (CELLULASE 5); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note CELLULASE 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G71380.1); Has 1020 Blast hits to 1016 proteins in 163 species: Archae - 0; Bacteria - 255; Metazoa - 117; Fungi - 14; Plants - 610; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G22880.2p  transcript_id AT1G22880.2  protein_id AT1G22880.2p  transcript_id AT1G22880.2  
At1g22882	chr1:008099150	0.0	W/8099150-8099303,8099392-8101220	AT1G22882.1 CDS  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71360.1); Has 1862 Blast hits to 1619 proteins in 245 species: Archae - 32; Bacteria - 119; Metazoa - 736; Fungi - 195; Plants - 90; Viruses - 21; Other Eukaryotes - 669 (source: NCBI BLink).  protein_id AT1G22882.1p  transcript_id AT1G22882.1  protein_id AT1G22882.1p  transcript_id AT1G22882.1  
At1g22885	chr1:008101608	0.0	W/8101608-8101713,8102030-8102133	AT1G22885.2 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22885.2p  transcript_id AT1G22885.2  protein_id AT1G22885.2p  transcript_id AT1G22885.2  
At1g22885	chr1:008101608	0.0	W/8101608-8101713,8102033-8102133	AT1G22885.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22885.1p  transcript_id AT1G22885.1  protein_id AT1G22885.1p  transcript_id AT1G22885.1  
At1g22890	chr1:008102851	0.0	W/8102851-8102956,8103113-8103228	AT1G22890.1 CDS  gene_syn F19G10.22, F19G10_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 10 Blast hits to 10 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22890.1p  transcript_id AT1G22890.1  protein_id AT1G22890.1p  transcript_id AT1G22890.1  
At1g22900	chr1:008103910	0.0	C/8103910-8104491	AT1G22900.1 CDS  gene_syn F19G10.14, F19G10_14  go_component endomembrane system|GO:0012505||IEA  go_process defense response|GO:0006952||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: disease resistance-responsive family protein (TAIR:AT5G42500.1); Has 560 Blast hits to 559 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22900.1p  transcript_id AT1G22900.1  protein_id AT1G22900.1p  transcript_id AT1G22900.1  
At1g22910	chr1:008105808	0.0	W/8105808-8105981,8106106-8106238,8106534-8106660,8107108-8107147,8107291-8107519,8107593-8107618	AT1G22910.2 CDS  gene_syn F19G10.13, F19G10_13  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G33470.1); Has 10356 Blast hits to 8427 proteins in 478 species: Archae - 2; Bacteria - 546; Metazoa - 6040; Fungi - 981; Plants - 1916; Viruses - 0; Other Eukaryotes - 871 (source: NCBI BLink).  protein_id AT1G22910.2p  transcript_id AT1G22910.2  protein_id AT1G22910.2p  transcript_id AT1G22910.2  
At1g22910	chr1:008105808	0.0	W/8105808-8105981,8106106-8106238,8106534-8106660,8107108-8107147,8107291-8107519,8107613-8107659	AT1G22910.1 CDS  gene_syn F19G10.13, F19G10_13  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G33470.2); Has 10388 Blast hits to 8455 proteins in 482 species: Archae - 2; Bacteria - 546; Metazoa - 6063; Fungi - 990; Plants - 1916; Viruses - 0; Other Eukaryotes - 871 (source: NCBI BLink).  protein_id AT1G22910.1p  transcript_id AT1G22910.1  protein_id AT1G22910.1p  transcript_id AT1G22910.1  
At1g22910	chr1:008105808	0.0	W/8105808-8105981,8106106-8106238,8106534-8106660,8107108-8107147,8107291-8107523,8107613-8107949	AT1G22910.3 CDS  gene_syn F19G10.13, F19G10_13  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA binding|GO:0003723||ISS  product RNA recognition motif (RRM)-containing protein  note RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G33470.2); Has 10384 Blast hits to 8450 proteins in 478 species: Archae - 2; Bacteria - 546; Metazoa - 6061; Fungi - 987; Plants - 1916; Viruses - 0; Other Eukaryotes - 872 (source: NCBI BLink).  protein_id AT1G22910.3p  transcript_id AT1G22910.3  protein_id AT1G22910.3p  transcript_id AT1G22910.3  
At1g22920	chr1:008109882	0.0	C/8109882-8109971,8110070-8110147,8110674-8110759,8110863-8111010,8111097-8111378,8111506-8111895	AT1G22920.1 CDS  gene_syn AJH1, ARABIDOPSIS JAB1 HOMOLOG 1, COP9 SIGNALOSOME 5A, CSN5, CSN5A, F19G10.12, F19G10_12, JAB1, PUTATIVE JUN KINASE ACTIVATOR  gene CSN5A  function AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype.  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process G2 phase of mitotic cell cycle|GO:0000085|18434413|IMP  go_process protein deneddylation|GO:0000338|12724534|TAS  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process response to auxin stimulus|GO:0009733|15923347|IGI  go_process specification of floral organ identity|GO:0010093|12724534|IMP  go_process negative regulation of photomorphogenesis|GO:0010100|15923347|IGI  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function molecular_function|GO:0003674||ND  product CSN5A (COP9 SIGNALOSOME 5A)  note COP9 SIGNALOSOME 5A (CSN5A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; LOCATED IN: signalosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: CSN5B (COP9-SIGNALOSOME 5B); protein binding (TAIR:AT1G71230.1); Has 947 Blast hits to 947 proteins in 180 species: Archae - 0; Bacteria - 2; Metazoa - 396; Fungi - 268; Plants - 151; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G22920.1p  transcript_id AT1G22920.1  protein_id AT1G22920.1p  transcript_id AT1G22920.1  
At1g22920	chr1:008109998	0.0	C/8109998-8110147,8110674-8110759,8110863-8111010,8111097-8111378,8111506-8111895	AT1G22920.2 CDS  gene_syn AJH1, ARABIDOPSIS JAB1 HOMOLOG 1, COP9 SIGNALOSOME 5A, CSN5, CSN5A, F19G10.12, F19G10_12, JAB1, PUTATIVE JUN KINASE ACTIVATOR  gene CSN5A  function AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype.  go_component signalosome|GO:0008180|11019806|TAS  go_component signalosome|GO:0008180|9707402|IPI  go_process G2 phase of mitotic cell cycle|GO:0000085|18434413|IMP  go_process protein deneddylation|GO:0000338|12724534|TAS  go_process photomorphogenesis|GO:0009640|11019806|TAS  go_process response to auxin stimulus|GO:0009733|15923347|IGI  go_process specification of floral organ identity|GO:0010093|12724534|IMP  go_process negative regulation of photomorphogenesis|GO:0010100|15923347|IGI  go_process signalosome assembly|GO:0010387|17307927|IMP  go_process cullin deneddylation|GO:0010388|17307927|IMP  go_function molecular_function|GO:0003674||ND  product CSN5A (COP9 SIGNALOSOME 5A)  note COP9 SIGNALOSOME 5A (CSN5A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 8 processes; LOCATED IN: signalosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: CSN5B (COP9-SIGNALOSOME 5B); protein binding (TAIR:AT1G71230.1); Has 947 Blast hits to 947 proteins in 180 species: Archae - 0; Bacteria - 2; Metazoa - 396; Fungi - 268; Plants - 151; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G22920.2p  transcript_id AT1G22920.2  protein_id AT1G22920.2p  transcript_id AT1G22920.2  
At1g22930	chr1:008117521	0.0	W/8117521-8117709,8117829-8117947,8118024-8118468,8118554-8118669,8118752-8119505,8119584-8120012,8120111-8120299,8120389-8120616,8120750-8121068,8121163-8121343,8121428-8121854	AT1G22930.1 CDS  gene_syn F19G10.11, F19G10_11  go_process biological_process|GO:0008150||ND  product T-complex protein 11  note T-complex protein 11; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT4G09150.1); Has 8706 Blast hits to 5954 proteins in 561 species: Archae - 13; Bacteria - 948; Metazoa - 3901; Fungi - 587; Plants - 246; Viruses - 12; Other Eukaryotes - 2999 (source: NCBI BLink).  protein_id AT1G22930.1p  transcript_id AT1G22930.1  protein_id AT1G22930.1p  transcript_id AT1G22930.1  
At1g22930	chr1:008118049	0.0	W/8118049-8118468,8118554-8118669,8118752-8119505,8119584-8120012,8120111-8120299,8120389-8120616,8120750-8121068,8121163-8121343,8121428-8121854	AT1G22930.2 CDS  gene_syn F19G10.11, F19G10_11  go_process biological_process|GO:0008150||ND  product T-complex protein 11  note T-complex protein 11; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT4G09150.1); Has 2589 Blast hits to 1871 proteins in 263 species: Archae - 5; Bacteria - 240; Metazoa - 893; Fungi - 232; Plants - 99; Viruses - 4; Other Eukaryotes - 1116 (source: NCBI BLink).  protein_id AT1G22930.2p  transcript_id AT1G22930.2  protein_id AT1G22930.2p  transcript_id AT1G22930.2  
At1g22940	chr1:008122384	0.0	W/8122384-8122689,8122766-8122841,8122924-8122999,8123091-8123225,8123445-8123509,8123617-8123744,8124035-8124288,8124380-8124908	AT1G22940.1 CDS  gene_syn F19G10.10, F19G10_10, TH-1, TH1, THIAMINE REQUIRING 1, THIAMINEE, THIE  gene TH1  function Encodes a bifunctional enzyme required for thiamine (vitamin B1) biosynthesis. TH1 can phosphorylate HMP-P to produce HMP-PP, the pyrimidine heterocyclic subunit of thiamine. TH1 also catalyzes the condensation of HMP-PP and HET to form thiamine monophosphate (TMP). TH1 also appears capable of phosphorylating HMP based on E.coli mutant complementation assays. th1 mutants are thiamine auxotrophs that die as seedlings on unsupplemented media.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast|GO:0009507|17174261|IDA  go_process thiamin biosynthetic process|GO:0009228|17174261|IMP  go_function thiamin-phosphate diphosphorylase activity|GO:0004789|16666289|IDA  go_function thiamin-phosphate diphosphorylase activity|GO:0004789|17174261|IGI  go_function hydroxymethylpyrimidine kinase activity|GO:0008902|17174261|IGI  go_function phosphomethylpyrimidine kinase activity|GO:0008972|17174261|IGI  product TH1 (THIAMINE REQUIRING 1); hydroxymethylpyrimidine kinase/ phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase  note THIAMINE REQUIRING 1 (TH1); FUNCTIONS IN: thiamin-phosphate diphosphorylase activity, phosphomethylpyrimidine kinase activity, hydroxymethylpyrimidine kinase activity; INVOLVED IN: thiamin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), Phosphomethylpyrimidine kinase type-2 (InterPro:IPR004399), Aldolase-type TIM barrel (InterPro:IPR013785), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); Has 9884 Blast hits to 9818 proteins in 1390 species: Archae - 206; Bacteria - 6393; Metazoa - 141; Fungi - 213; Plants - 58; Viruses - 0; Other Eukaryotes - 2873 (source: NCBI BLink).  protein_id AT1G22940.1p  transcript_id AT1G22940.1  protein_id AT1G22940.1p  transcript_id AT1G22940.1  
At1g22950	chr1:008125291	0.0	C/8125291-8125356,8125447-8125558,8125641-8125759,8125838-8125962,8126047-8126133,8126223-8126373,8126459-8126635,8126727-8126774,8126860-8127168	AT1G22950.1 CDS  gene_syn F19G10.24, F19G10_24  go_process protein metabolic process|GO:0019538||IEA  go_function iron ion binding|GO:0005506||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|GO:0016706||IEA  go_component cellular_component|GO:0005575||ND  product iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors  note iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT3G18210.2); Has 343 Blast hits to 342 proteins in 56 species: Archae - 0; Bacteria - 16; Metazoa - 252; Fungi - 0; Plants - 36; Viruses - 3; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G22950.1p  transcript_id AT1G22950.1  protein_id AT1G22950.1p  transcript_id AT1G22950.1  
At1g22960	chr1:008128086	0.0	C/8128086-8130242	AT1G22960.1 CDS  gene_syn F19G10.9, F19G10_9  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 24639 Blast hits to 6022 proteins in 188 species: Archae - 4; Bacteria - 28; Metazoa - 847; Fungi - 689; Plants - 21875; Viruses - 0; Other Eukaryotes - 1196 (source: NCBI BLink).  protein_id AT1G22960.1p  transcript_id AT1G22960.1  protein_id AT1G22960.1p  transcript_id AT1G22960.1  
At1g22970	chr1:008130840	0.0	C/8130840-8131534,8131654-8131863,8131946-8132039,8132125-8132199	AT1G22970.1 CDS  gene_syn F19G10.8, F19G10_8  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71150.1); Has 102 Blast hits to 102 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 9; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G22970.1p  transcript_id AT1G22970.1  protein_id AT1G22970.1p  transcript_id AT1G22970.1  
At1g22980	chr1:008132649	0.0	C/8132649-8132690,8132775-8133433,8133604-8133813,8133907-8134000,8134091-8134165	AT1G22980.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22970.1); Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22980.1p  transcript_id AT1G22980.1  protein_id AT1G22980.1p  transcript_id AT1G22980.1  
At1g22985	chr1:008135346	0.0	C/8135346-8135825	AT1G22985.1 CDS  function encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G71130.1); Has 3629 Blast hits to 3546 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3618; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G22985.1p  transcript_id AT1G22985.1  protein_id AT1G22985.1p  transcript_id AT1G22985.1  
At1g22990	chr1:008139221	0.0	W/8139221-8139307,8139396-8139471,8139750-8140045	AT1G22990.1 CDS  gene_syn F19G10.25  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related  note heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (TAIR:AT1G71050.1); Has 630 Blast hits to 584 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 9; Plants - 619; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G22990.1p  transcript_id AT1G22990.1  protein_id AT1G22990.1p  transcript_id AT1G22990.1  
At1g23000	chr1:008143614	0.0	W/8143614-8143652,8143741-8143816,8143904-8144865	AT1G23000.1 CDS  gene_syn F19G10.6, F19G10_6  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_component cellular_component|GO:0005575||ND  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT3G06130.1); Has 1790 Blast hits to 1499 proteins in 100 species: Archae - 0; Bacteria - 31; Metazoa - 175; Fungi - 36; Plants - 724; Viruses - 0; Other Eukaryotes - 824 (source: NCBI BLink).  protein_id AT1G23000.1p  transcript_id AT1G23000.1  protein_id AT1G23000.1p  transcript_id AT1G23000.1  
At1g23010	chr1:008147353	0.0	W/8147353-8147583,8147906-8149030,8149104-8149439,8149527-8149580	AT1G23010.1 CDS  gene_syn F19G10.5, F19G10_5, LPR1, Low Phosphate Root1  gene LPR1  function Encodes a protein with multicopper oxidase activity.  go_component endomembrane system|GO:0012505||IEA  go_process cellular response to phosphate starvation|GO:0016036|17496893|IMP  go_function copper ion binding|GO:0005507||ISS  go_function oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor|GO:0016682|17496893|IDA  product LPR1 (Low Phosphate Root1); copper ion binding / oxidoreductase, acting on diphenols and related substances as donors, oxygen as acceptor  note Low Phosphate Root1 (LPR1); FUNCTIONS IN: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor, copper ion binding; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: LPR2 (Low Phosphate Root2); copper ion binding / oxidoreductase (TAIR:AT1G71040.1); Has 1882 Blast hits to 1596 proteins in 474 species: Archae - 8; Bacteria - 1544; Metazoa - 13; Fungi - 55; Plants - 145; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G23010.1p  transcript_id AT1G23010.1  protein_id AT1G23010.1p  transcript_id AT1G23010.1  
At1g23020	chr1:008150187	0.0	C/8150187-8150326,8150429-8151081,8151173-8151416,8151500-8151827,8152034-8152268,8152670-8152870,8152968-8153070,8153180-8153357	AT1G23020.1 CDS  gene_syn ATFRO3, F19G10.4, F19G10_4, FERRIC REDUCTION OXIDASE 3, FRO3  gene FRO3  function Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component membrane|GO:0016020||ISS  go_function ferric-chelate reductase activity|GO:0000293|16006655|IDA  go_function ferric-chelate reductase activity|GO:0000293||ISS  product FRO3; ferric-chelate reductase  note FRO3; FUNCTIONS IN: ferric-chelate reductase activity; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: FRO1 (FERRIC REDUCTION OXIDASE 1); ferric-chelate reductase (TAIR:AT1G01590.1); Has 1691 Blast hits to 1690 proteins in 254 species: Archae - 0; Bacteria - 161; Metazoa - 468; Fungi - 710; Plants - 251; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G23020.1p  transcript_id AT1G23020.1  protein_id AT1G23020.1p  transcript_id AT1G23020.1  
At1g23030	chr1:008156745	0.0	W/8156745-8157023,8157200-8157712,8157796-8158842	AT1G23030.1 CDS  gene_syn F19G10.3, F19G10_3  go_component ubiquitin ligase complex|GO:0000151||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  go_process response to chitin|GO:0010200|17722694|IEP  product armadillo/beta-catenin repeat family protein / U-box domain-containing protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT1G71020.1); Has 4743 Blast hits to 3238 proteins in 215 species: Archae - 0; Bacteria - 20; Metazoa - 1811; Fungi - 490; Plants - 1894; Viruses - 3; Other Eukaryotes - 525 (source: NCBI BLink).  protein_id AT1G23030.1p  transcript_id AT1G23030.1  protein_id AT1G23030.1p  transcript_id AT1G23030.1  
At1g23037	chr1:008162414	0.0	W/8162414-8162526,8162774-8163149	AT1G23037.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G52320.1).  protein_id AT1G23037.1p  transcript_id AT1G23037.1  protein_id AT1G23037.1p  transcript_id AT1G23037.1  
At1g23040	chr1:008165025	0.0	W/8165025-8165459	AT1G23040.1 CDS  gene_syn F19G10.19  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G70990.1); Has 24570 Blast hits to 9974 proteins in 625 species: Archae - 38; Bacteria - 2365; Metazoa - 9097; Fungi - 1965; Plants - 6452; Viruses - 1327; Other Eukaryotes - 3326 (source: NCBI BLink).  protein_id AT1G23040.1p  transcript_id AT1G23040.1  protein_id AT1G23040.1p  transcript_id AT1G23040.1  
At1g23050	chr1:008168631	0.0	W/8168631-8169116	AT1G23050.1 CDS  gene_syn F19G10.1  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: stem, inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 4687 Blast hits to 2769 proteins in 267 species: Archae - 0; Bacteria - 258; Metazoa - 1639; Fungi - 503; Plants - 1568; Viruses - 205; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT1G23050.1p  transcript_id AT1G23050.1  protein_id AT1G23050.1p  transcript_id AT1G23050.1  
At1g23060	chr1:008170946	0.0	C/8170946-8171272,8171364-8171532,8171619-8172043	AT1G23060.2 CDS  gene_syn T26J12.16, T26J12_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70950.1); Has 291 Blast hits to 257 proteins in 80 species: Archae - 0; Bacteria - 32; Metazoa - 137; Fungi - 19; Plants - 32; Viruses - 3; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G23060.2p  transcript_id AT1G23060.2  protein_id AT1G23060.2p  transcript_id AT1G23060.2  
At1g23060	chr1:008170946	0.0	C/8170946-8171272,8171364-8171532,8171619-8172184,8172698-8172739	AT1G23060.1 CDS  gene_syn T26J12.16, T26J12_16  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70950.1); Has 368 Blast hits to 334 proteins in 83 species: Archae - 0; Bacteria - 32; Metazoa - 145; Fungi - 21; Plants - 89; Viruses - 3; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G23060.1p  transcript_id AT1G23060.1  protein_id AT1G23060.1p  transcript_id AT1G23060.1  
At1g23070	chr1:008174011	0.0	C/8174011-8174400,8174522-8174771,8174852-8174940,8175015-8175193,8175280-8175388,8175468-8175524,8175621-8175758	AT1G23070.1 CDS  gene_syn T26J12.15, T26J12_15  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38360.2); Has 592 Blast hits to 587 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 123; Plants - 128; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G23070.1p  transcript_id AT1G23070.1  protein_id AT1G23070.1p  transcript_id AT1G23070.1  
At1g23074	chr1:008177832	0.0	W/8177832-8177996	AT1G23074.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G23074.1p  transcript_id AT1G23074.1  protein_id AT1G23074.1p  transcript_id AT1G23074.1  
At1g23080	chr1:008180768	0.0	C/8180768-8180834,8180926-8181002,8181083-8181240,8181682-8181767,8181858-8182128,8182206-8183406	AT1G23080.1 CDS  gene_syn PIN-FORMED 7, PIN7, T26J12.14, T26J12_14  gene PIN7  function Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16601150|IDA  go_process pattern specification process|GO:0007389|15635403|IGI  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process auxin polar transport|GO:0009926||ISS  go_process longitudinal axis specification|GO:0009942|14614497|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process root development|GO:0048364|15635403|IGI  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  go_function auxin efflux transmembrane transporter activity|GO:0010329|16601150|IDA  product PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter  note PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, longitudinal axis specification, auxin polar transport, pattern specification process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter (TAIR:AT1G70940.1); Has 1079 Blast hits to 992 proteins in 269 species: Archae - 31; Bacteria - 500; Metazoa - 7; Fungi - 2; Plants - 251; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).  protein_id AT1G23080.1p  transcript_id AT1G23080.1  protein_id AT1G23080.1p  transcript_id AT1G23080.1  
At1g23080	chr1:008180768	0.0	C/8180768-8180834,8180926-8181002,8181083-8181240,8181682-8181767,8181858-8182128,8182218-8183406	AT1G23080.3 CDS  gene_syn PIN-FORMED 7, PIN7, T26J12.14, T26J12_14  gene PIN7  function Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16601150|IDA  go_process pattern specification process|GO:0007389|15635403|IGI  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process auxin polar transport|GO:0009926||ISS  go_process longitudinal axis specification|GO:0009942|14614497|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process root development|GO:0048364|15635403|IGI  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  go_function auxin efflux transmembrane transporter activity|GO:0010329|16601150|IDA  product PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter  note PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, longitudinal axis specification, auxin polar transport, pattern specification process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter (TAIR:AT1G70940.1); Has 1079 Blast hits to 992 proteins in 270 species: Archae - 31; Bacteria - 500; Metazoa - 5; Fungi - 2; Plants - 251; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink).  protein_id AT1G23080.3p  transcript_id AT1G23080.3  protein_id AT1G23080.3p  transcript_id AT1G23080.3  
At1g23080	chr1:008181644	0.0	C/8181644-8181767,8181858-8182128,8182218-8183406	AT1G23080.2 CDS  gene_syn PIN-FORMED 7, PIN7, T26J12.14, T26J12_14  gene PIN7  function Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16601150|IDA  go_process pattern specification process|GO:0007389|15635403|IGI  go_process auxin polar transport|GO:0009926|16601150|IMP  go_process auxin polar transport|GO:0009926||ISS  go_process longitudinal axis specification|GO:0009942|14614497|IMP  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process root development|GO:0048364|15635403|IGI  go_function transporter activity|GO:0005215||ISS  go_function auxin:hydrogen symporter activity|GO:0009672||ISS  go_function auxin efflux transmembrane transporter activity|GO:0010329|16601150|IDA  product PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin:hydrogen symporter/ transporter  note PIN-FORMED 7 (PIN7); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity, auxin efflux transmembrane transporter activity; INVOLVED IN: response to cyclopentenone, root development, longitudinal axis specification, auxin polar transport, pattern specification process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter (TAIR:AT1G70940.1); Has 401 Blast hits to 351 proteins in 78 species: Archae - 0; Bacteria - 88; Metazoa - 5; Fungi - 2; Plants - 247; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G23080.2p  transcript_id AT1G23080.2  protein_id AT1G23080.2p  transcript_id AT1G23080.2  
At1g23090	chr1:008185238	0.0	C/8185238-8185390,8185486-8185562,8185728-8185813,8186022-8186626,8186813-8186929,8187017-8187130,8187396-8187461,8187539-8187710,8188248-8188455,8188541-8188589,8188706-8188954	AT1G23090.1 CDS  gene_syn AST91, SULFATE TRANSPORTER, SULFATE TRANSPORTER 91, SULTR3;3, T26J12.13, T26J12_13  gene AST91  function Encodes AST91 mRNA for sulfate transporter.  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process sulfate transport|GO:0008272||IEA  go_function sulfate transmembrane transporter activity|GO:0015116||ISS  product AST91 (SULFATE TRANSPORTER 91); sulfate transmembrane transporter  note SULFATE TRANSPORTER 91 (AST91); FUNCTIONS IN: sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: SULTR3;4 (SULFATE TRANSPORTER 3;4); sulfate transmembrane transporter (TAIR:AT3G15990.1); Has 6935 Blast hits to 6881 proteins in 1100 species: Archae - 36; Bacteria - 3528; Metazoa - 981; Fungi - 315; Plants - 324; Viruses - 0; Other Eukaryotes - 1751 (source: NCBI BLink).  protein_id AT1G23090.1p  transcript_id AT1G23090.1  protein_id AT1G23090.1p  transcript_id AT1G23090.1  
At1g23100	chr1:008195867	0.0	W/8195867-8195971,8196057-8196196,8196288-8196336	AT1G23100.1 CDS  gene_syn T26J12.12, T26J12_12  go_process protein folding|GO:0006457||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  product 10 kDa chaperonin, putative  note 10 kDa chaperonin, putative; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin Cpn10 (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: CPN10 (CHAPERONIN 10); chaperone binding (TAIR:AT1G14980.1); Has 5807 Blast hits to 5744 proteins in 1499 species: Archae - 0; Bacteria - 3188; Metazoa - 245; Fungi - 75; Plants - 201; Viruses - 2; Other Eukaryotes - 2096 (source: NCBI BLink).  protein_id AT1G23100.1p  transcript_id AT1G23100.1  protein_id AT1G23100.1p  transcript_id AT1G23100.1  
At1g23110	chr1:008196608	0.0	C/8196608-8196913,8196993-8197131,8197199-8197277,8197364-8197419,8197499-8197665	AT1G23110.1 CDS  gene_syn T26J12.20, T26J12_20  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23110.1p  transcript_id AT1G23110.1  protein_id AT1G23110.1p  transcript_id AT1G23110.1  
At1g23110	chr1:008196608	0.0	C/8196608-8196913,8196993-8197131,8197199-8197277,8197364-8197419,8197499-8197665	AT1G23110.2 CDS  gene_syn T26J12.20, T26J12_20  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23110.2p  transcript_id AT1G23110.2  protein_id AT1G23110.2p  transcript_id AT1G23110.2  
At1g23110	chr1:008196608	0.0	C/8196608-8196913,8196993-8197131,8197199-8197277,8197364-8197419,8197499-8197665	AT1G23110.3 CDS  gene_syn T26J12.20, T26J12_20  go_component chloroplast|GO:0009507||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1); Has 29 Blast hits to 29 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23110.3p  transcript_id AT1G23110.3  protein_id AT1G23110.3p  transcript_id AT1G23110.3  
At1g23120	chr1:008198788	0.0	W/8198788-8198962,8199088-8199359	AT1G23120.1 CDS  gene_syn T26J12.11, T26J12_11  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G70870.1); Has 258 Blast hits to 238 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23120.1p  transcript_id AT1G23120.1  protein_id AT1G23120.1p  transcript_id AT1G23120.1  
At1g23130	chr1:008200434	0.0	W/8200434-8200638,8200720-8200997	AT1G23130.1 CDS  gene_syn T26J12.10, T26J12_10  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP31 (MLP-LIKE PROTEIN 31) (TAIR:AT1G70840.1); Has 227 Blast hits to 205 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23130.1p  transcript_id AT1G23130.1  protein_id AT1G23130.1p  transcript_id AT1G23130.1  
At1g23140	chr1:008202362	0.0	C/8202362-8202652,8202762-8202857,8203062-8203172	AT1G23140.1 CDS  gene_syn T26J12.9, T26J12_9  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product C2 domain-containing protein  note C2 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein (TAIR:AT1G70810.1); Has 1912 Blast hits to 1663 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 1142; Fungi - 196; Plants - 393; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).  protein_id AT1G23140.1p  transcript_id AT1G23140.1  protein_id AT1G23140.1p  transcript_id AT1G23140.1  
At1g23145	chr1:008203962	0.0	W/8203962-8204255	AT1G23145.1 CDS  gene_syn RALF-LIKE 2, RALFL2  gene RALFL2  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL2 (RALF-LIKE 2); signal transducer  note RALF-LIKE 2 (RALFL2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL3 (RALF-LIKE 3); signal transducer (TAIR:AT1G23147.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23145.1p  transcript_id AT1G23145.1  protein_id AT1G23145.1p  transcript_id AT1G23145.1  
At1g23147	chr1:008205934	0.0	W/8205934-8206206	AT1G23147.1 CDS  gene_syn RALF-LIKE 3, RALFL3  gene RALFL3  function Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL3 (RALF-LIKE 3); signal transducer  note RALF-LIKE 3 (RALFL3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL2 (RALF-LIKE 2); signal transducer (TAIR:AT1G23145.1); Has 17 Blast hits to 17 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23147.1p  transcript_id AT1G23147.1  protein_id AT1G23147.1p  transcript_id AT1G23147.1  
At1g23149	chr1:008206714	0.0	W/8206714-8206869	AT1G23149.1 CDS  gene_syn CPuORF29, Conserved peptide upstream open reading frame 29  gene CPuORF29  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF29 represents a conserved upstream opening reading frame relative to major ORF AT1G23150.1  product CPuORF29 (Conserved peptide upstream open reading frame 29)  note Conserved peptide upstream open reading frame 29 (CPuORF29); BEST Arabidopsis thaliana protein match is: CPuORF28 (Conserved peptide upstream open reading frame 28) (TAIR:AT1G70782.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23149.1p  transcript_id AT1G23149.1  protein_id AT1G23149.1p  transcript_id AT1G23149.1  
At1g23150	chr1:008206948	0.0	W/8206948-8207176,8207265-8207461	AT1G23150.1 CDS  gene_syn T26J12.8, T26J12_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70780.1); Has 61 Blast hits to 61 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23150.1p  transcript_id AT1G23150.1  protein_id AT1G23150.1p  transcript_id AT1G23150.1  
At1g23160	chr1:008209232	0.0	W/8209232-8209524,8209677-8209778,8209876-8210657,8210766-8211325	AT1G23160.1 CDS  gene_syn T26J12.7, T26J12_7  go_process response to auxin stimulus|GO:0009733||ISS  product auxin-responsive GH3 family protein  note auxin-responsive GH3 family protein; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: PBS3 (AVRPPHB SUSCEPTIBLE 3) (TAIR:AT5G13320.1); Has 673 Blast hits to 654 proteins in 104 species: Archae - 0; Bacteria - 166; Metazoa - 51; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G23160.1p  transcript_id AT1G23160.1  protein_id AT1G23160.1p  transcript_id AT1G23160.1  
At1g23170	chr1:008212724	0.0	W/8212724-8213230,8213571-8213759,8213966-8214103,8214213-8214331,8214410-8214542,8214623-8214752,8214835-8214914,8215005-8215145,8215244-8215516	AT1G23170.1 CDS  gene_syn T26J12.6, T26J12_6  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70770.1); Has 87 Blast hits to 87 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23170.1p  transcript_id AT1G23170.1  protein_id AT1G23170.1p  transcript_id AT1G23170.1  
At1g23180	chr1:008216125	0.0	W/8216125-8216379,8216524-8216883,8216974-8217189,8217408-8218066,8218148-8218244,8218347-8218400,8218481-8218521,8218619-8218809,8218884-8219515	AT1G23180.1 CDS  gene_syn T26J12.19, T26J12_19  go_component chloroplast|GO:0009507|18431481|IDA  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product armadillo/beta-catenin repeat family protein  note armadillo/beta-catenin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / F-box family protein (TAIR:AT2G44900.1); Has 1577 Blast hits to 1070 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 532; Fungi - 257; Plants - 682; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G23180.1p  transcript_id AT1G23180.1  protein_id AT1G23180.1p  transcript_id AT1G23180.1  
At1g23190	chr1:008219946	0.0	W/8219946-8220023,8220612-8220693,8220781-8220836,8221190-8221303,8221439-8221501,8221647-8221766,8221853-8221953,8222059-8222118,8222220-8222319,8222413-8222570,8222658-8222753,8222863-8222926,8223013-8223094,8223177-8223355,8223447-8223523,8223634-8223766,8223879-8223995,8224115-8224186	AT1G23190.1 CDS  gene_syn T26J12.5, T26J12_5  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function magnesium ion binding|GO:0000287||IEA  go_function intramolecular transferase activity, phosphotransferases|GO:0016868||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function phosphoglucomutase activity|GO:0004614||ISS  product phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative  note phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, N-terminal (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative (TAIR:AT1G70730.3); Has 4473 Blast hits to 4462 proteins in 1171 species: Archae - 68; Bacteria - 2876; Metazoa - 457; Fungi - 136; Plants - 117; Viruses - 0; Other Eukaryotes - 819 (source: NCBI BLink).  protein_id AT1G23190.1p  transcript_id AT1G23190.1  protein_id AT1G23190.1p  transcript_id AT1G23190.1  
At1g23200	chr1:008227236	0.0	W/8227236-8228235,8228736-8229400	AT1G23200.1 CDS  gene_syn F26F24.2  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_process cell wall modification|GO:0042545||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_component plant-type cell wall|GO:0009505||ISS  go_function pectinesterase activity|GO:0030599||ISS  product pectinesterase family protein  note pectinesterase family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectinesterase family protein (TAIR:AT2G45220.1); Has 1490 Blast hits to 1459 proteins in 273 species: Archae - 6; Bacteria - 408; Metazoa - 1; Fungi - 133; Plants - 940; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G23200.1p  transcript_id AT1G23200.1  protein_id AT1G23200.1p  transcript_id AT1G23200.1  
At1g23201	chr1:008230209	0.0	W/8230209-8230775	AT1G23201.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK (InterPro:IPR012891); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02210.1).  protein_id AT1G23201.1p  transcript_id AT1G23201.1  protein_id AT1G23201.1p  transcript_id AT1G23201.1  
At1g23205	chr1:008234234	0.0	C/8234234-8234851	AT1G23205.1 CDS  gene_syn F26F24.4, F26F24_4  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G70720.1); Has 417 Blast hits to 412 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 417; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23205.1p  transcript_id AT1G23205.1  protein_id AT1G23205.1p  transcript_id AT1G23205.1  
At1g23210	chr1:008240174	0.0	W/8240174-8240788,8241118-8241210,8241283-8241720,8241806-8242129	AT1G23210.1 CDS  gene_syn Arabidopsis thaliana glycosyl hydrolase 9B6, AtGH9B6, F26F24.6, F26F24_6  gene AtGH9B6  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds  note Arabidopsis thaliana glycosyl hydrolase 9B6 (AtGH9B6); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT1G70710.1); Has 1102 Blast hits to 1098 proteins in 187 species: Archae - 0; Bacteria - 301; Metazoa - 138; Fungi - 14; Plants - 622; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G23210.1p  transcript_id AT1G23210.1  protein_id AT1G23210.1p  transcript_id AT1G23210.1  
At1g23220	chr1:008242614	0.0	W/8242614-8242844,8243978-8244136	AT1G23220.1 CDS  gene_syn F26F24.7, F26F24_7  go_component microtubule associated complex|GO:0005875||IEA  go_process microtubule-based process|GO:0007017||IEA  go_function microtubule motor activity|GO:0003777||IEA  go_component microtubule associated complex|GO:0005875||ISS  go_process microtubule-based process|GO:0007017||ISS  go_function microtubule motor activity|GO:0003777||ISS  product dynein light chain type 1 family protein  note dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1 and 2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: dynein light chain, putative (TAIR:AT5G20110.1); Has 867 Blast hits to 867 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 472; Fungi - 71; Plants - 120; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).  protein_id AT1G23220.1p  transcript_id AT1G23220.1  protein_id AT1G23220.1p  transcript_id AT1G23220.1  
At1g23230	chr1:008244481	0.0	W/8244481-8244588,8244669-8244712,8244799-8244898,8244986-8245924,8246061-8246303,8246511-8246780,8246890-8247091,8247189-8247460,8247676-8247759,8247855-8247949,8248097-8248259,8248353-8248769,8248853-8248966,8249047-8249172,8249248-8249396,8249642-8249882,8250061-8250847,8250920-8251101,8251347-8251450,8251534-8251741	AT1G23230.1 CDS  gene_syn F26F24.8, F26F24_8  go_process response to salt stress|GO:0009651|11351099|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 128 Blast hits to 125 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G23230.1p  transcript_id AT1G23230.1  protein_id AT1G23230.1p  transcript_id AT1G23230.1  
At1g23240	chr1:008252894	0.0	C/8252894-8253062,8253198-8253323,8253454-8253548,8253818-8253903,8254051-8254129	AT1G23240.3 CDS  gene_syn F26F24.33, F26F24_33  go_component extracellular region|GO:0005576|11431566|IDA  go_function calcium ion binding|GO:0005509||ISS  go_function lipase activity|GO:0016298|11431566|ISS  product caleosin-related family protein  note caleosin-related family protein; FUNCTIONS IN: lipase activity, calcium ion binding; LOCATED IN: extracellular region; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein (TAIR:AT1G70670.1); Has 230 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 181; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G23240.3p  transcript_id AT1G23240.3  protein_id AT1G23240.3p  transcript_id AT1G23240.3  
At1g23240	chr1:008252894	0.0	C/8252894-8253062,8253198-8253323,8253454-8253548,8253818-8253903,8254051-8254152,8254440-8254494	AT1G23240.1 CDS  gene_syn F26F24.33, F26F24_33  go_component extracellular region|GO:0005576|11431566|IDA  go_function calcium ion binding|GO:0005509||ISS  go_function lipase activity|GO:0016298|11431566|ISS  product caleosin-related family protein  note caleosin-related family protein; FUNCTIONS IN: lipase activity, calcium ion binding; LOCATED IN: extracellular region; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein (TAIR:AT1G70670.1); Has 230 Blast hits to 225 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 46; Plants - 181; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G23240.1p  transcript_id AT1G23240.1  protein_id AT1G23240.1p  transcript_id AT1G23240.1  
At1g23240	chr1:008253164	0.0	C/8253164-8253323,8253454-8253548,8253818-8253903,8254051-8254234	AT1G23240.2 CDS  gene_syn F26F24.33, F26F24_33  go_component extracellular region|GO:0005576|11431566|IDA  go_function calcium ion binding|GO:0005509||ISS  go_function lipase activity|GO:0016298|11431566|ISS  product caleosin-related family protein  note caleosin-related family protein; FUNCTIONS IN: lipase activity, calcium ion binding; LOCATED IN: extracellular region; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein (TAIR:AT1G70670.1); Has 227 Blast hits to 222 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 44; Plants - 181; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G23240.2p  transcript_id AT1G23240.2  protein_id AT1G23240.2p  transcript_id AT1G23240.2  
At1g23250	chr1:008255233	0.0	C/8255233-8255398,8255518-8255643,8255744-8255832,8256014-8256100,8256210-8256311,8256524-8256560,8256760-8256770	AT1G23250.1 CDS  gene_syn F26F24.9, F26F24_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calcium ion binding  note calcium ion binding; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: caleosin-related family protein (TAIR:AT1G23240.3); Has 182 Blast hits to 181 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 44; Plants - 137; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G23250.1p  transcript_id AT1G23250.1  protein_id AT1G23250.1p  transcript_id AT1G23250.1  
At1g23260	chr1:008257209	0.0	C/8257209-8257264,8257451-8257577,8257670-8257795,8258185-8258324,8258546-8258573	AT1G23260.1 CDS  gene_syn F26F24.10, F26F24_10, MMS ZWEI HOMOLOGUE 1, MMZ1, UBIQUITIN E2 VARIANT 1A, UEV1A  gene MMZ1  function MMZ1/UEV1A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1A can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. However, a combination of MMZ1/UEV1A and UBC13A do not do a good job of rescuing an mms2 ubc13 double mutant in yeast. MMZ1/UEV1A transcripts are found at low levels in most plant organs, but cannot be detected in the pollen. Transcript levels do not appear to be stress-inducible. The uev1a-1 mutant shows normal sensitivity to MMS in germination assays suggesting that UEV1A is not required for DNA damage tolerance during this developmental stage.  go_component UBC13-MMS2 complex|GO:0031372|18178771|IPI  go_process postreplication repair|GO:0006301|18178771|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18178771|IDA  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|18178771|IPI  product MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase  note MMS ZWEI HOMOLOGUE 1 (MMZ1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: postreplication repair; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: MMZ2 (MMS ZWEI HOMOLOGE 2); protein binding / ubiquitin-protein ligase (TAIR:AT1G70660.1); Has 3313 Blast hits to 3313 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 1791; Fungi - 484; Plants - 524; Viruses - 0; Other Eukaryotes - 514 (source: NCBI BLink).  protein_id AT1G23260.1p  transcript_id AT1G23260.1  protein_id AT1G23260.1p  transcript_id AT1G23260.1  
At1g23270	chr1:008259602	0.0	C/8259602-8260144	AT1G23270.1 CDS  gene_syn F26F24.11, F26F24_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31460.1); Has 1253 Blast hits to 112 proteins in 35 species: Archae - 0; Bacteria - 36; Metazoa - 458; Fungi - 1; Plants - 16; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink).  protein_id AT1G23270.1p  transcript_id AT1G23270.1  protein_id AT1G23270.1p  transcript_id AT1G23270.1  
At1g23280	chr1:008260865	0.0	C/8260865-8260918,8261014-8261135,8261235-8261352,8261445-8261585,8261675-8261762,8261878-8261975,8262090-8262208,8262386-8262495,8262589-8262650	AT1G23280.1 CDS  gene_syn F26F24.12, F26F24_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MAK16 protein-related  note MAK16 protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mak16 protein (InterPro:IPR006958); Has 5463 Blast hits to 3446 proteins in 254 species: Archae - 5; Bacteria - 214; Metazoa - 2654; Fungi - 567; Plants - 207; Viruses - 131; Other Eukaryotes - 1685 (source: NCBI BLink).  protein_id AT1G23280.1p  transcript_id AT1G23280.1  protein_id AT1G23280.1p  transcript_id AT1G23280.1  
At1g23290	chr1:008263007	0.0	W/8263007-8263447	AT1G23290.1 CDS  gene_syn 60S RIBOSOMAL PROTEIN L27A, F26F24.13, F26F24_13, RIBOSOMAL PROTEIN L27A, RPL27A, RPL27AB  gene RPL27AB  function Encodes a ribosomal protein L27A, a constituent of the large subunit of the ribosomal complex. Regulated by TCP20.  go_component nucleolus|GO:0005730|15496452|IDA  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component large ribosomal subunit|GO:0015934||TAS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process translation|GO:0006412||TAS  go_function structural constituent of ribosome|GO:0003735||ISS  product RPL27AB; structural constituent of ribosome  note RPL27AB; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15 (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G70600.1); Has 835 Blast hits to 835 proteins in 319 species: Archae - 121; Bacteria - 15; Metazoa - 289; Fungi - 107; Plants - 96; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT1G23290.1p  transcript_id AT1G23290.1  protein_id AT1G23290.1p  transcript_id AT1G23290.1  
At1g23300	chr1:008263827	0.0	C/8263827-8263946,8264019-8264105,8264193-8264311,8264412-8264650,8264728-8264784,8264851-8264937,8265027-8265298,8265372-8265641,8265752-8266048	AT1G23300.1 CDS  gene_syn F26F24.14, F26F24_14  go_component membrane|GO:0016020||IEA  go_process multidrug transport|GO:0006855||IEA  go_function drug transporter activity|GO:0015238||IEA  go_function antiporter activity|GO:0015297||IEA  go_component membrane|GO:0016020||ISS  go_function transporter activity|GO:0005215||ISS  go_function antiporter activity|GO:0015297||ISS  product MATE efflux family protein  note MATE efflux family protein; FUNCTIONS IN: drug transporter activity, antiporter activity, transporter activity; INVOLVED IN: multidrug transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 5382 Blast hits to 5344 proteins in 1090 species: Archae - 101; Bacteria - 3515; Metazoa - 120; Fungi - 206; Plants - 703; Viruses - 0; Other Eukaryotes - 737 (source: NCBI BLink).  protein_id AT1G23300.1p  transcript_id AT1G23300.1  protein_id AT1G23300.1p  transcript_id AT1G23300.1  
At1g23310	chr1:008268720	0.0	C/8268720-8268849,8268931-8269087,8269186-8269277,8269356-8269420,8269504-8269569,8269649-8269780,8269869-8270042,8270129-8270287,8270371-8270458,8270542-8270623,8270711-8270828,8270912-8270977,8271213-8271329	AT1G23310.1 CDS  gene_syn ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, AOAT1, F26F24.16, F26F24_16, GGT1, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE  gene GGT1  function Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|12529529|IDA  go_component peroxisome|GO:0005777|12631323|IDA  go_process photorespiration|GO:0009853|12529529|TAS  go_process photorespiration|GO:0009853||IMP  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|12529529|IDA  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|17318317|IMP  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12529529|IDA  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12631323|IMP  product GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase  note GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase (TAIR:AT1G70580.4); Has 17281 Blast hits to 17276 proteins in 1660 species: Archae - 478; Bacteria - 9668; Metazoa - 529; Fungi - 464; Plants - 878; Viruses - 0; Other Eukaryotes - 5264 (source: NCBI BLink).  protein_id AT1G23310.1p  transcript_id AT1G23310.1  protein_id AT1G23310.1p  transcript_id AT1G23310.1  
At1g23310	chr1:008268808	0.0	C/8268808-8268817,8268931-8269087,8269186-8269277,8269356-8269420,8269504-8269569,8269649-8269780,8269869-8270042,8270129-8270287,8270371-8270458,8270542-8270623,8270711-8270828,8270912-8270977,8271213-8271329	AT1G23310.2 CDS  gene_syn ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, AOAT1, F26F24.16, F26F24_16, GGT1, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE  gene GGT1  function Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.  go_component vacuole|GO:0005773|15539469|IDA  go_component peroxisome|GO:0005777|12154131|IDA  go_component peroxisome|GO:0005777|17951448|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component peroxisome|GO:0005777|12529529|IDA  go_component peroxisome|GO:0005777|12631323|IDA  go_process photorespiration|GO:0009853|12529529|TAS  go_process photorespiration|GO:0009853||IMP  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|12529529|IDA  go_function L-alanine:2-oxoglutarate aminotransferase activity|GO:0004021|17318317|IMP  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12529529|IDA  go_function glycine:2-oxoglutarate aminotransferase activity|GO:0047958|12631323|IMP  product GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase  note GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I and II (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase (TAIR:AT1G70580.4); Has 17075 Blast hits to 17070 proteins in 1660 species: Archae - 469; Bacteria - 9629; Metazoa - 529; Fungi - 464; Plants - 874; Viruses - 0; Other Eukaryotes - 5110 (source: NCBI BLink).  protein_id AT1G23310.2p  transcript_id AT1G23310.2  protein_id AT1G23310.2p  transcript_id AT1G23310.2  
At1g23320	chr1:008273423	0.0	C/8273423-8273622,8273691-8273980,8274244-8274527,8274795-8275098,8275262-8275350	AT1G23320.1 CDS  gene_syn F26F24.17, F26F24_17, TAR1, TRYPTOPHAN AMINOTRANSFERASE RELATED 1  gene TAR1  function Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. This gene appears to be expressed at a very low level during seedling development. Triple mutant analyses implicate this gene in embryonic development.  go_component cellular_component|GO:0005575||ND  go_process embryonic development ending in seed dormancy|GO:0009793|18394997|IGI  go_process cotyledon vascular tissue pattern formation|GO:0010588|18394997|IGI  go_process cotyledon development|GO:0048825|18394997|IGI  go_process primary root development|GO:0080022|18394997|IGI  go_function carbon-sulfur lyase activity|GO:0016846||ISS  go_function L-tryptophan:2-oxoglutarate aminotransferase activity|GO:0050362|18394997|ISS  go_function L-tryptophan:pyruvate aminotransferase activity|GO:0080097|18394997|ISS  product TAR1 (TRYPTOPHAN AMINOTRANSFERASE RELATED 1); L-tryptophan:2-oxoglutarate aminotransferase/ L-tryptophan:pyruvate aminotransferase/ carbon-sulfur lyase  note TRYPTOPHAN AMINOTRANSFERASE RELATED 1 (TAR1); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: primary root development, cotyledon vascular tissue pattern formation, embryonic development ending in seed dormancy, cotyledon development; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Allinase, C-terminal (InterPro:IPR006948), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1); L-alanine:2-oxoglutarate aminotransferase/ L-glutamine:2-oxoglutarate aminotransferase/ L-leucine:2-oxoglutarate aminotransferase/ L-methionine:2-oxoglutarate aminotransferase/ L-phenylalanine:2-oxoglutarate aminotransferase/ L-phenylalanine:pyruvate aminotransferase/ L-tryptophan:2-oxoglutarate aminotransferase/ L-tryptophan:pyruvate aminotransferase/ L-tyrosine:2-oxoglutarate aminotransferase/ L-tyrosine:pyruvate aminotransferase/ carbon-sulfur lyase/ pyridoxal phosphate binding (TAIR:AT1G70560.1); Has 211 Blast hits to 210 proteins in 56 species: Archae - 14; Bacteria - 58; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G23320.1p  transcript_id AT1G23320.1  protein_id AT1G23320.1p  transcript_id AT1G23320.1  
At1g23330	chr1:008279874	0.0	C/8279874-8280057,8280164-8280295,8280376-8280819,8280898-8281001,8281098-8281198,8281288-8281391,8281469-8281563,8281640-8281891	AT1G23330.1 CDS  gene_syn F26F24.20, F26F24_20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10740.1); Has 364 Blast hits to 364 proteins in 87 species: Archae - 0; Bacteria - 252; Metazoa - 1; Fungi - 4; Plants - 26; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).  protein_id AT1G23330.1p  transcript_id AT1G23330.1  protein_id AT1G23330.1p  transcript_id AT1G23330.1  
At1g23340	chr1:008284158	0.0	C/8284158-8284535,8284977-8285123,8285237-8285290,8285401-8285565,8285853-8286062,8286167-8286253,8286340-8286528	AT1G23340.1 CDS  gene_syn F26F24.22, F26F24_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70550.2); Has 438 Blast hits to 405 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 424; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23340.1p  transcript_id AT1G23340.1  protein_id AT1G23340.1p  transcript_id AT1G23340.1  
At1g23340	chr1:008284158	0.0	C/8284158-8284535,8284977-8285123,8285237-8285290,8285401-8285565,8285853-8286062,8286167-8286253,8286340-8286528	AT1G23340.2 CDS  gene_syn F26F24.22, F26F24_22  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70550.2); Has 438 Blast hits to 405 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 10; Plants - 424; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23340.2p  transcript_id AT1G23340.2  protein_id AT1G23340.2p  transcript_id AT1G23340.2  
At1g23350	chr1:008293696	0.0	C/8293696-8294175	AT1G23350.1 CDS  gene_syn F26F24.23, F26F24_23  go_component endomembrane system|GO:0012505||IEA  go_function enzyme inhibitor activity|GO:0004857||IEA  go_function pectinesterase activity|GO:0030599||IEA  go_process biological_process|GO:0008150||ND  go_function pectinesterase inhibitor activity|GO:0046910||ISS  product invertase/pectin methylesterase inhibitor family protein  note invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: EDA24 (embryo sac development arrest 24); enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor (TAIR:AT1G70540.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23350.1p  transcript_id AT1G23350.1  protein_id AT1G23350.1p  transcript_id AT1G23350.1  
At1g23360	chr1:008295421	0.0	C/8295421-8295521,8295677-8295776,8295879-8295940,8296025-8296158,8296254-8296339	AT1G23360.2 CDS  gene_syn F26F24.24, F26F24_24  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT5G57300.2); Has 5180 Blast hits to 5180 proteins in 1278 species: Archae - 78; Bacteria - 2752; Metazoa - 99; Fungi - 102; Plants - 52; Viruses - 0; Other Eukaryotes - 2097 (source: NCBI BLink).  protein_id AT1G23360.2p  transcript_id AT1G23360.2  protein_id AT1G23360.2p  transcript_id AT1G23360.2  
At1g23360	chr1:008295421	0.0	C/8295421-8295521,8295677-8295776,8295879-8295940,8296025-8296158,8296254-8296339	AT1G23360.3 CDS  gene_syn F26F24.24, F26F24_24  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT5G57300.2); Has 5180 Blast hits to 5180 proteins in 1278 species: Archae - 78; Bacteria - 2752; Metazoa - 99; Fungi - 102; Plants - 52; Viruses - 0; Other Eukaryotes - 2097 (source: NCBI BLink).  protein_id AT1G23360.3p  transcript_id AT1G23360.3  protein_id AT1G23360.3p  transcript_id AT1G23360.3  
At1g23360	chr1:008295421	0.0	C/8295421-8295521,8295677-8295776,8295879-8295940,8296025-8296158,8296254-8296342,8296419-8296509,8296594-8296658,8296750-8296893	AT1G23360.1 CDS  gene_syn F26F24.24, F26F24_24  go_component chloroplast|GO:0009507||IEA  go_function methyltransferase activity|GO:0008168||IEA  go_function methyltransferase activity|GO:0008168||ISS  product UbiE/COQ5 methyltransferase family protein  note UbiE/COQ5 methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: UbiE/COQ5 methyltransferase family protein (TAIR:AT5G57300.2); Has 10223 Blast hits to 10221 proteins in 1487 species: Archae - 351; Bacteria - 5788; Metazoa - 264; Fungi - 303; Plants - 236; Viruses - 0; Other Eukaryotes - 3281 (source: NCBI BLink).  protein_id AT1G23360.1p  transcript_id AT1G23360.1  protein_id AT1G23360.1p  transcript_id AT1G23360.1  
At1g23380	chr1:008297499	0.0	C/8297499-8297657,8297747-8297988,8301665-8301803,8301905-8302027,8302172-8302492	AT1G23380.1 CDS  gene_syn F26F24.32, F26F24_32, KNAT6, KNAT6L, KNAT6S  gene KNAT6  function homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.  go_component nucleus|GO:0005634||IEA  go_process meristem maintenance|GO:0010073|16798887|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|11311158|ISS  product KNAT6; DNA binding / transcription activator/ transcription factor  note KNAT6; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: meristem maintenance; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), KNOX1 (InterPro:IPR005540), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor (TAIR:AT1G70510.1); Has 5090 Blast hits to 5090 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 1461; Fungi - 168; Plants - 3377; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G23380.1p  transcript_id AT1G23380.1  protein_id AT1G23380.1p  transcript_id AT1G23380.1  
At1g23380	chr1:008297499	0.0	C/8297499-8297657,8297747-8297988,8301665-8301803,8301905-8302033,8302172-8302492	AT1G23380.2 CDS  gene_syn F26F24.32, F26F24_32, KNAT6, KNAT6L, KNAT6S  gene KNAT6  function homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.  go_component nucleus|GO:0005634||IEA  go_process meristem maintenance|GO:0010073|16798887|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|11311158|ISS  product KNAT6; DNA binding / transcription activator/ transcription factor  note KNAT6; FUNCTIONS IN: transcription factor activity, transcription activator activity, DNA binding; INVOLVED IN: meristem maintenance; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor (TAIR:AT1G70510.1); Has 5089 Blast hits to 5089 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 1461; Fungi - 168; Plants - 3376; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G23380.2p  transcript_id AT1G23380.2  protein_id AT1G23380.2p  transcript_id AT1G23380.2  
At1g23390	chr1:008309449	0.0	C/8309449-8310633	AT1G23390.1 CDS  gene_syn F26F24.26, F26F24_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G24760.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G23390.1p  transcript_id AT1G23390.1  protein_id AT1G23390.1p  transcript_id AT1G23390.1  
At1g23400	chr1:008312199	0.0	C/8312199-8312593,8312751-8312895,8313170-8313297,8313447-8313672,8313863-8313990,8314068-8314740	AT1G23400.1 CDS  gene_syn ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, ATCAF2, CAF2, F26F24.27, F26F24_27  gene CAF2  function Promotes the splicing of chloroplast group II introns.  go_component chloroplast|GO:0009507||IEA  go_process Group II intron splicing|GO:0000373|17071648|IDA  go_function RNA splicing factor activity, transesterification mechanism|GO:0031202|17071648|IDA  product CAF2; RNA splicing factor, transesterification mechanism  note CAF2; FUNCTIONS IN: RNA splicing factor activity, transesterification mechanism; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CAF1; RNA splicing factor, transesterification mechanism (TAIR:AT2G20020.1); Has 172 Blast hits to 146 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 167; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G23400.1p  transcript_id AT1G23400.1  protein_id AT1G23400.1p  transcript_id AT1G23400.1  
At1g23410	chr1:008314940	0.0	W/8314940-8315410	AT1G23410.1 CDS  gene_syn F26F24.28, F26F24_28  go_component plasma membrane|GO:0005886|17317660|IDA  go_process translation|GO:0006412||IEA  go_process protein modification process|GO:0006464||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic small ribosomal subunit|GO:0022627|17934214|IDA  go_process protein ubiquitination during ubiquitin-dependent protein catabolic process|GO:0042787||ISS  go_function protein binding|GO:0005515||ISS  product ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)  note ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA); FUNCTIONS IN: protein binding, structural constituent of ribosome; INVOLVED IN: protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ5 (ubiquitin 5); protein binding / structural constituent of ribosome (TAIR:AT3G62250.1); Has 9337 Blast hits to 5597 proteins in 658 species: Archae - 84; Bacteria - 7; Metazoa - 4226; Fungi - 946; Plants - 1978; Viruses - 174; Other Eukaryotes - 1922 (source: NCBI BLink).  protein_id AT1G23410.1p  transcript_id AT1G23410.1  protein_id AT1G23410.1p  transcript_id AT1G23410.1  
At1g23420	chr1:008317423	0.0	W/8317423-8317524,8317622-8317759,8317861-8318011,8318105-8318153,8318273-8318348,8318485-8318583,8319024-8319104	AT1G23420.1 CDS  gene_syn F26F24.29, F26F24_29, INNER NO OUTER, INO  gene INO  function Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.  go_component nucleus|GO:0005634|12183380|IDA  go_process polarity specification of adaxial/abaxial axis|GO:0009944|12183380|IDA  go_process ovule development|GO:0048481|12183380|IMP  go_function transcription factor activity|GO:0003700|10601041|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515|15299139|IPI  product INO (INNER NO OUTER); protein binding / transcription factor  note INNER NO OUTER (INO); FUNCTIONS IN: protein binding, transcription factor activity; INVOLVED IN: ovule development, polarity specification of adaxial/abaxial axis; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: YAB2 (YABBY2); transcription factor (TAIR:AT1G08465.1); Has 344 Blast hits to 337 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 325; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G23420.1p  transcript_id AT1G23420.1  protein_id AT1G23420.1p  transcript_id AT1G23420.1  
At1g23440	chr1:008321940	0.0	W/8321940-8322200,8323451-8323555,8323659-8323706,8323780-8324019	AT1G23440.1 CDS  gene_syn F28C11.26, F28C11_26  go_process proteolysis|GO:0006508||IEA  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product pyrrolidone-carboxylate peptidase family protein  note pyrrolidone-carboxylate peptidase family protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I (InterPro:IPR000816), Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: pyrrolidone-carboxylate peptidase family protein (TAIR:AT1G56700.2); Has 814 Blast hits to 813 proteins in 329 species: Archae - 74; Bacteria - 564; Metazoa - 31; Fungi - 14; Plants - 59; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G23440.1p  transcript_id AT1G23440.1  protein_id AT1G23440.1p  transcript_id AT1G23440.1  
At1g23440	chr1:008321940	0.0	W/8321940-8322224	AT1G23440.2 CDS  gene_syn F28C11.26, F28C11_26  go_component cellular_component|GO:0005575||ND  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product pyrrolidone-carboxylate peptidase family protein  note pyrrolidone-carboxylate peptidase family protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: pyrrolidone-carboxylate peptidase family protein (TAIR:AT1G56700.2); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23440.2p  transcript_id AT1G23440.2  protein_id AT1G23440.2p  transcript_id AT1G23440.2  
At1g23450	chr1:008324698	0.0	W/8324698-8326697	AT1G23450.1 CDS  gene_syn F28C11.30, F28C11_30  function pentatricopeptide (PPR) repeat-containing protein  go_component mitochondrion|GO:0005739||IEA  product unknown protein  note LOCATED IN: mitochondrion; EXPRESSED IN: pedicel, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G74600.1).  protein_id AT1G23450.1p  transcript_id AT1G23450.1  protein_id AT1G23450.1p  transcript_id AT1G23450.1  
At1g23460	chr1:008327382	0.0	W/8327382-8327633,8327844-8327972,8328066-8328236,8328337-8328357,8328457-8328664,8328756-8328837,8328906-8329014,8329108-8329224,8329329-8329622	AT1G23460.1 CDS  gene_syn F28C11.9  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function polygalacturonase activity|GO:0004650||IEA  go_process carbohydrate metabolic process|GO:0005975||ISS  go_function polygalacturonase activity|GO:0004650||ISS  product polygalacturonase  note polygalacturonase; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: polygalacturonase, putative / pectinase, putative (TAIR:AT1G70500.1); Has 2595 Blast hits to 2585 proteins in 348 species: Archae - 2; Bacteria - 471; Metazoa - 8; Fungi - 1135; Plants - 896; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G23460.1p  transcript_id AT1G23460.1  protein_id AT1G23460.1p  transcript_id AT1G23460.1  
At1g23465	chr1:008330055	0.0	W/8330055-8330180,8330256-8330480,8330822-8330938	AT1G23465.1 CDS  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  product signal peptidase-related  note signal peptidase-related; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: peptidase/ serine-type peptidase (TAIR:AT1G29960.1); Has 2496 Blast hits to 2493 proteins in 740 species: Archae - 0; Bacteria - 1622; Metazoa - 213; Fungi - 148; Plants - 138; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT1G23465.1p  transcript_id AT1G23465.1  protein_id AT1G23465.1p  transcript_id AT1G23465.1  
At1g23470	chr1:008331297	0.0	W/8331297-8332136	AT1G23470.1 pseudogenic_transcript  pseudo  gene_syn F28C11.10  note pseudogene, polygalacturonase (pectinase), putative, similar to polygalacturonase (Cucumis sativus) GI:6624205; contains Pfam profiles PF00461: Signal peptidase I, PF00295: Polygalacturonase (pectinase); blastp match of 69% identity and 4.8e-49 P-value to GP|6624205|dbj|BAA88472.1||AB035890 polygalacturonase {Cucumis sativus}  
At1g23480	chr1:008333917	0.0	W/8333917-8333982,8334082-8334414,8334511-8334609,8334720-8334972,8335056-8335303,8335388-8335701,8335788-8335982,8336068-8336230	AT1G23480.1 CDS  gene_syn ATCSLA03, ATCSLA3, CELLULOSE SYNTHASE-LIKE A3, CSLA03, F28C11.11  gene ATCSLA03  function encodes a gene similar to cellulose synthase  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE-LIKE A3 (ATCSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA15; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G13410.1); Has 2808 Blast hits to 2804 proteins in 774 species: Archae - 104; Bacteria - 2035; Metazoa - 9; Fungi - 71; Plants - 311; Viruses - 11; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G23480.1p  transcript_id AT1G23480.1  protein_id AT1G23480.1p  transcript_id AT1G23480.1  
At1g23480	chr1:008333917	0.0	W/8333917-8333982,8334082-8334414,8334511-8334609,8334720-8334972,8335056-8335303,8335388-8335701,8335788-8335982,8336068-8336230	AT1G23480.2 CDS  gene_syn ATCSLA03, ATCSLA3, CELLULOSE SYNTHASE-LIKE A3, CSLA03, F28C11.11  gene ATCSLA03  function encodes a gene similar to cellulose synthase  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE-LIKE A3 (ATCSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA15; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G13410.1); Has 2808 Blast hits to 2804 proteins in 774 species: Archae - 104; Bacteria - 2035; Metazoa - 9; Fungi - 71; Plants - 311; Viruses - 11; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G23480.2p  transcript_id AT1G23480.2  protein_id AT1G23480.2p  transcript_id AT1G23480.2  
At1g23480	chr1:008334232	0.0	W/8334232-8334414,8334511-8334609,8334720-8334972,8335056-8335303,8335388-8335701,8335788-8335982,8336068-8336230	AT1G23480.3 CDS  gene_syn ATCSLA03, ATCSLA3, CELLULOSE SYNTHASE-LIKE A3, CSLA03, F28C11.11  gene ATCSLA03  function encodes a gene similar to cellulose synthase  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3); cellulose synthase/ transferase, transferring glycosyl groups  note CELLULOSE SYNTHASE-LIKE A3 (ATCSLA03); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA15; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G13410.1); Has 2795 Blast hits to 2791 proteins in 772 species: Archae - 102; Bacteria - 2024; Metazoa - 9; Fungi - 71; Plants - 311; Viruses - 11; Other Eukaryotes - 267 (source: NCBI BLink).  protein_id AT1G23480.3p  transcript_id AT1G23480.3  protein_id AT1G23480.3p  transcript_id AT1G23480.3  
At1g23490	chr1:008337232	0.0	W/8337232-8337379,8337509-8337579,8337733-8337852,8337940-8338058,8338192-8338273,8338368-8338373	AT1G23490.1 CDS  gene_syn ADP-RIBOSYLATION FACTOR, ADP-RIBOSYLATION FACTOR 1, ADP-RIBOSYLATION FACTOR 1A, ATARF, ATARF1, ATARFA1A, F28C11.12  gene ATARF1  function Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.  go_component intracellular|GO:0005622||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_process N-terminal protein myristoylation|GO:0006499|12912986|IDA  go_function protein binding|GO:0005515|15723828|TAS  go_function protein binding|GO:0005515|17307898|IPI  go_function GTP binding|GO:0005525|15723828|ISS  go_function GTP binding|GO:0005525|15723828|TAS  go_function phospholipase activator activity|GO:0016004|15723828|TAS  product ATARF1 (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding  note ADP-RIBOSYLATION FACTOR 1 (ATARF1); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: response to cadmium ion, N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ARFA1D; GTP binding / phospholipase activator/ protein binding (TAIR:AT1G70490.3); Has 12057 Blast hits to 12040 proteins in 421 species: Archae - 12; Bacteria - 44; Metazoa - 6621; Fungi - 1335; Plants - 1253; Viruses - 3; Other Eukaryotes - 2789 (source: NCBI BLink).  protein_id AT1G23490.1p  transcript_id AT1G23490.1  protein_id AT1G23490.1p  transcript_id AT1G23490.1  
At1g23500	chr1:008339668	0.0	W/8339668-8339926,8340038-8340168,8340253-8340480,8340571-8340826,8340909-8341072	AT1G23500.1 CDS  gene_syn F28C11.13  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function lipase activity|GO:0016298||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G73610.1); Has 1789 Blast hits to 1771 proteins in 154 species: Archae - 0; Bacteria - 218; Metazoa - 1; Fungi - 17; Plants - 1535; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G23500.1p  transcript_id AT1G23500.1  protein_id AT1G23500.1p  transcript_id AT1G23500.1  
At1g23510	chr1:008341449	0.0	C/8341449-8341694,8341840-8341986,8342077-8342223,8342348-8342422	AT1G23510.2 CDS  gene_syn F28C11.14, F28C11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23520.1); Has 84 Blast hits to 74 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23510.2p  transcript_id AT1G23510.2  protein_id AT1G23510.2p  transcript_id AT1G23510.2  
At1g23510	chr1:008341449	0.0	C/8341449-8341694,8341840-8341986,8342077-8342223,8342348-8342497,8342584-8342646	AT1G23510.1 CDS  gene_syn F28C11.14, F28C11_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23520.1); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23510.1p  transcript_id AT1G23510.1  protein_id AT1G23510.1p  transcript_id AT1G23510.1  
At1g23520	chr1:008343571	0.0	C/8343571-8343879,8343975-8344118,8344218-8344496,8344616-8344675	AT1G23520.1 CDS  gene_syn F28C11.15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 92 Blast hits to 82 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23520.1p  transcript_id AT1G23520.1  protein_id AT1G23520.1p  transcript_id AT1G23520.1  
At1g23530	chr1:008345861	0.0	W/8345861-8346430	AT1G23530.1 CDS  gene_syn F28C11.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70470.1); Has 25 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G23530.1p  transcript_id AT1G23530.1  protein_id AT1G23530.1p  transcript_id AT1G23530.1  
At1g23540	chr1:008346942	0.0	C/8346942-8347187,8347278-8347439,8347525-8347672,8347827-8347903,8347993-8348063,8348162-8348248,8348331-8348822,8348907-8349786	AT1G23540.1 CDS  gene_syn F28C11.17  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G70460.1); Has 307341 Blast hits to 169109 proteins in 4549 species: Archae - 575; Bacteria - 44733; Metazoa - 131565; Fungi - 41312; Plants - 37348; Viruses - 6478; Other Eukaryotes - 45330 (source: NCBI BLink).  protein_id AT1G23540.1p  transcript_id AT1G23540.1  protein_id AT1G23540.1p  transcript_id AT1G23540.1  
At1g23550	chr1:008350912	0.0	W/8350912-8351399,8351579-8351817,8351901-8352031,8352119-8352232	AT1G23550.1 CDS  gene_syn F28C11.18, SIMILAR TO RCD ONE 2, SRO2  gene SRO2  function Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.  go_component nucleus|GO:0005634||IEA  go_function NAD+ ADP-ribosyltransferase activity|GO:0003950||IEA  go_process biological_process|GO:0008150||ND  product SRO2 (SIMILAR TO RCD ONE 2); NAD+ ADP-ribosyltransferase  note SIMILAR TO RCD ONE 2 (SRO2); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO3 (SIMILAR TO RCD ONE 3); NAD+ ADP-ribosyltransferase (TAIR:AT1G70440.1); Has 113 Blast hits to 109 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G23550.1p  transcript_id AT1G23550.1  protein_id AT1G23550.1p  transcript_id AT1G23550.1  
At1g23560	chr1:008352802	0.0	C/8352802-8353242,8353325-8353468,8353552-8353674,8353763-8353924,8354017-8354145	AT1G23560.1 CDS  gene_syn F28C11.32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70480.2); Has 96 Blast hits to 86 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23560.1p  transcript_id AT1G23560.1  protein_id AT1G23560.1p  transcript_id AT1G23560.1  
At1g23570	chr1:008355081	0.0	C/8355081-8355491,8355589-8355732,8356053-8356232,8356308-8356364	AT1G23570.2 CDS  gene_syn F28C11.33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23580.1); Has 112 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 21; Metazoa - 2; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23570.2p  transcript_id AT1G23570.2  protein_id AT1G23570.2p  transcript_id AT1G23570.2  
At1g23570	chr1:008355081	0.0	C/8355081-8355491,8355589-8355732,8356059-8356232,8356308-8356364	AT1G23570.1 CDS  gene_syn F28C11.33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23580.1); Has 90 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23570.1p  transcript_id AT1G23570.1  protein_id AT1G23570.1p  transcript_id AT1G23570.1  
At1g23570	chr1:008355081	0.0	C/8355081-8355491,8355589-8355738	AT1G23570.3 CDS  gene_syn F28C11.33  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23580.1); Has 85 Blast hits to 75 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23570.3p  transcript_id AT1G23570.3  protein_id AT1G23570.3p  transcript_id AT1G23570.3  
At1g23580	chr1:008357491	0.0	C/8357491-8357853,8357949-8358092,8358178-8358297,8358401-8358571,8358647-8358706	AT1G23580.1 CDS  gene_syn F28C11.28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23580.1p  transcript_id AT1G23580.1  protein_id AT1G23580.1p  transcript_id AT1G23580.1  
At1g23590	chr1:008359440	0.0	C/8359440-8359646,8359740-8359883,8359984-8360118,8360221-8360322	AT1G23590.2 CDS  gene_syn F28C11.29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 86 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23590.2p  transcript_id AT1G23590.2  protein_id AT1G23590.2p  transcript_id AT1G23590.2  
At1g23590	chr1:008359440	0.0	C/8359440-8359646,8359740-8359883,8359984-8360118,8360221-8360370,8360504-8360521	AT1G23590.1 CDS  gene_syn F28C11.29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 86 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23590.1p  transcript_id AT1G23590.1  protein_id AT1G23590.1p  transcript_id AT1G23590.1  
At1g23600	chr1:008361198	0.0	C/8361198-8361515,8361608-8361751,8361832-8361969,8362072-8362224,8362299-8362358	AT1G23600.1 CDS  gene_syn F28C11.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23690.1); Has 94 Blast hits to 82 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23600.1p  transcript_id AT1G23600.1  protein_id AT1G23600.1p  transcript_id AT1G23600.1  
At1g23600	chr1:008361198	0.0	C/8361198-8361515,8361608-8361751,8362072-8362224,8362299-8362358	AT1G23600.2 CDS  gene_syn F28C11.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23690.2); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23600.2p  transcript_id AT1G23600.2  protein_id AT1G23600.2p  transcript_id AT1G23600.2  
At1g23610	chr1:008363047	0.0	C/8363047-8363235	AT1G23610.1 CDS  gene_syn F28C11.24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23640.1); Has 77 Blast hits to 67 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23610.1p  transcript_id AT1G23610.1  protein_id AT1G23610.1p  transcript_id AT1G23610.1  
At1g23620	chr1:008364662	0.0	C/8364662-8366449	AT1G23620.1 pseudogenic_transcript  pseudo  gene_syn F28C11.21  note pseudogene, hypothetical protein  
At1g23640	chr1:008367170	0.0	C/8367170-8367478,8367578-8367721,8367804-8367941,8368063-8368206,8368279-8368321,8368480-8368523,8369342-8369422,8369547-8369690,8369981-8370148,8370221-8370280	AT1G23640.1 CDS  gene_syn F28C11.27  go_component chloroplast|GO:0009507||IEA  product unknown protein  note unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23660.1).  protein_id AT1G23640.1p  transcript_id AT1G23640.1  protein_id AT1G23640.1p  transcript_id AT1G23640.1  
At1g23650	chr1:008371020	0.0	C/8371020-8371106	AT1G23650.1 CDS  gene_syn F5O8.41, F5O8_41  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23650.1p  transcript_id AT1G23650.1  protein_id AT1G23650.1p  transcript_id AT1G23650.1  
At1g23660	chr1:008371609	0.0	C/8371609-8371917,8372008-8372151,8372244-8372381,8372497-8372640,8372713-8372772	AT1G23660.1 CDS  gene_syn F28C11.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23640.1); Has 96 Blast hits to 84 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23660.1p  transcript_id AT1G23660.1  protein_id AT1G23660.1p  transcript_id AT1G23660.1  
At1g23670	chr1:008373407	0.0	C/8373407-8373721,8373834-8373980,8374068-8374202,8375530-8375676,8375757-8375807	AT1G23670.2 CDS  gene_syn F28C11.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23520.1); Has 92 Blast hits to 80 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23670.2p  transcript_id AT1G23670.2  protein_id AT1G23670.2p  transcript_id AT1G23670.2  
At1g23670	chr1:008373407	0.0	C/8373407-8373721,8373834-8373980,8375530-8375676,8375757-8375807	AT1G23670.1 CDS  gene_syn F28C11.25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.2); Has 87 Blast hits to 74 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23670.1p  transcript_id AT1G23670.1  protein_id AT1G23670.1p  transcript_id AT1G23670.1  
At1g23680	chr1:008376687	0.0	C/8376687-8376928,8376959-8377094,8377136-8377156	AT1G23680.1 CDS  gene_syn F5O8.23, F5O8_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); Has 55 Blast hits to 47 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23680.1p  transcript_id AT1G23680.1  protein_id AT1G23680.1p  transcript_id AT1G23680.1  
At1g23690	chr1:008377433	0.0	C/8377433-8377741,8377836-8377979,8378066-8378191,8378301-8378465,8378572-8378634	AT1G23690.2 CDS  gene_syn F5O8.24, F5O8_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23690.2p  transcript_id AT1G23690.2  protein_id AT1G23690.2p  transcript_id AT1G23690.2  
At1g23690	chr1:008377433	0.0	C/8377433-8377741,8377836-8377979,8378066-8378206,8378301-8378465,8378572-8378634	AT1G23690.1 CDS  gene_syn F5O8.24, F5O8_24  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23600.1); Has 88 Blast hits to 76 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23690.1p  transcript_id AT1G23690.1  protein_id AT1G23690.1p  transcript_id AT1G23690.1  
At1g23700	chr1:008379454	0.0	C/8379454-8379532,8379617-8379777,8379871-8379987,8380110-8380226,8380411-8380467,8380548-8380718,8380801-8380866,8380967-8381030,8381120-8381167,8381252-8381382,8381464-8381718,8381810-8381965	AT1G23700.1 CDS  gene_syn F5O8.25, F5O8_25  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT1G70430.1); Has 75703 Blast hits to 74945 proteins in 1795 species: Archae - 37; Bacteria - 5942; Metazoa - 33766; Fungi - 7000; Plants - 14479; Viruses - 369; Other Eukaryotes - 14110 (source: NCBI BLink).  protein_id AT1G23700.1p  transcript_id AT1G23700.1  protein_id AT1G23700.1p  transcript_id AT1G23700.1  
At1g23710	chr1:008385363	0.0	W/8385363-8386250	AT1G23710.1 CDS  gene_syn F5O8.26, F5O8_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70420.1); Has 203 Blast hits to 197 proteins in 42 species: Archae - 0; Bacteria - 4; Metazoa - 16; Fungi - 9; Plants - 112; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G23710.1p  transcript_id AT1G23710.1  protein_id AT1G23710.1p  transcript_id AT1G23710.1  
At1g23720	chr1:008388655	0.0	W/8388655-8391342	AT1G23720.1 CDS  gene_syn F5O8.27, F5O8_27  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: hypocotyl, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 465068 Blast hits to 49018 proteins in 1571 species: Archae - 1162; Bacteria - 72867; Metazoa - 181494; Fungi - 68678; Plants - 63971; Viruses - 12154; Other Eukaryotes - 64742 (source: NCBI BLink).  protein_id AT1G23720.1p  transcript_id AT1G23720.1  protein_id AT1G23720.1p  transcript_id AT1G23720.1  
At1g23724	chr1:008393187	0.0	W/8393187-8393330	AT1G23724.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G23724.1p  transcript_id AT1G23724.1  protein_id AT1G23724.1p  transcript_id AT1G23724.1  
At1g23730	chr1:008395965	0.0	W/8395965-8396017,8396266-8396406,8396679-8396727,8396965-8397081,8397197-8397250,8397466-8397554,8397642-8397747,8397847-8398014	AT1G23730.1 CDS  gene_syn ATBCA3, BCA3, BETA CARBONIC ANHYDRASE 3, BETA CARBONIC ANHYDRASE 4, F5O8.28, F5O8_28  gene BCA3  go_component plasma membrane|GO:0005886|17317660|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process carbon utilization|GO:0015976||IEA  go_function carbonate dehydratase activity|GO:0004089||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cytosol|GO:0005829|17407539|IDA  go_process carbon utilization|GO:0015976||ISS  go_function carbonate dehydratase activity|GO:0004089||ISS  go_function zinc ion binding|GO:0008270||ISS  product BCA3 (BETA CARBONIC ANHYDRASE 4); carbonate dehydratase/ zinc ion binding  note BETA CARBONIC ANHYDRASE 4 (BCA3); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: carbon utilization; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase, putative / carbonate dehydratase, putative (TAIR:AT1G70410.3); Has 3237 Blast hits to 3225 proteins in 947 species: Archae - 18; Bacteria - 2303; Metazoa - 48; Fungi - 142; Plants - 233; Viruses - 0; Other Eukaryotes - 493 (source: NCBI BLink).  protein_id AT1G23730.1p  transcript_id AT1G23730.1  protein_id AT1G23730.1p  transcript_id AT1G23730.1  
At1g23740	chr1:008398245	0.0	C/8398245-8398510,8398600-8398759,8398839-8399162,8399246-8399656	AT1G23740.1 CDS  gene_syn F5O8.29, F5O8_29  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component stromule|GO:0010319|16923014|IDA  go_process response to cold|GO:0009409|16923014|IEP  go_function zinc ion binding|GO:0008270||ISS  product oxidoreductase, zinc-binding dehydrogenase family protein  note oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G13010.1); Has 25735 Blast hits to 25635 proteins in 1642 species: Archae - 321; Bacteria - 14032; Metazoa - 1331; Fungi - 2499; Plants - 781; Viruses - 3; Other Eukaryotes - 6768 (source: NCBI BLink).  protein_id AT1G23740.1p  transcript_id AT1G23740.1  protein_id AT1G23740.1p  transcript_id AT1G23740.1  
At1g23750	chr1:008400638	0.0	W/8400638-8400863,8400984-8401171	AT1G23750.1 CDS  gene_syn F5O8.30, F5O8_30  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA-binding protein-related  note DNA-binding protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: DNA-binding protein-related (TAIR:AT1G10590.3); Has 136 Blast hits to 136 proteins in 34 species: Archae - 26; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G23750.1p  transcript_id AT1G23750.1  protein_id AT1G23750.1p  transcript_id AT1G23750.1  
At1g23760	chr1:008402142	0.0	W/8402142-8402192,8402330-8404147	AT1G23760.1 CDS  gene_syn F5O8.31, F5O8_31, JP630  gene JP630  function Encodes aromatic rich glycoprotein JP630.  go_process biological_process|GO:0008150||ND  go_function polygalacturonase activity|GO:0004650||ISS  product JP630; polygalacturonase  note JP630; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: BURP domain-containing protein / polygalacturonase, putative (TAIR:AT1G70370.1); Has 1549 Blast hits to 1137 proteins in 200 species: Archae - 0; Bacteria - 267; Metazoa - 411; Fungi - 174; Plants - 320; Viruses - 2; Other Eukaryotes - 375 (source: NCBI BLink).  protein_id AT1G23760.1p  transcript_id AT1G23760.1  protein_id AT1G23760.1p  transcript_id AT1G23760.1  
At1g23770	chr1:008405214	0.0	C/8405214-8406266	AT1G23770.1 CDS  gene_syn F5O8.32, F5O8_32  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23780.1); Has 160 Blast hits to 160 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G23770.1p  transcript_id AT1G23770.1  protein_id AT1G23770.1p  transcript_id AT1G23770.1  
At1g23780	chr1:008407053	0.0	C/8407053-8408480	AT1G23780.1 CDS  gene_syn F5O8.33, F5O8_33  product F-box family protein  note F-box family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23770.1); Has 177 Blast hits to 177 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G23780.1p  transcript_id AT1G23780.1  protein_id AT1G23780.1p  transcript_id AT1G23780.1  
At1g23790	chr1:008410099	0.0	W/8410099-8410830,8410906-8411073,8411165-8411256,8411353-8411917	AT1G23790.1 CDS  gene_syn F5O8.34, F5O8_34  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70340.1); Has 135 Blast hits to 108 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 7; Fungi - 6; Plants - 113; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G23790.1p  transcript_id AT1G23790.1  protein_id AT1G23790.1p  transcript_id AT1G23790.1  
At1g23800	chr1:008412238	0.0	C/8412238-8412511,8412598-8412659,8412734-8412871,8412964-8413101,8413175-8413348,8413440-8413529,8413608-8413837,8413933-8414086,8414171-8414313,8414387-8414512,8414729-8414804	AT1G23800.1 CDS  gene_syn ALDH2B, ALDH2B7, F5O8.35, F5O8_35  gene ALDH2B7  function Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.  go_component mitochondrion|GO:0005739||IEA  go_process metabolic process|GO:0008152||IEA  go_function 3-chloroallyl aldehyde dehydrogenase activity|GO:0004028||ISS  go_function aldehyde dehydrogenase (NAD) activity|GO:0004029|11999848|ISS  product ALDH2B7; 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)  note ALDH2B7; FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4); 3-chloroallyl aldehyde dehydrogenase/ ATP binding / aldehyde dehydrogenase (NAD) (TAIR:AT3G48000.1); Has 43385 Blast hits to 43091 proteins in 1797 species: Archae - 241; Bacteria - 19465; Metazoa - 2305; Fungi - 1320; Plants - 615; Viruses - 0; Other Eukaryotes - 19439 (source: NCBI BLink).  protein_id AT1G23800.1p  transcript_id AT1G23800.1  protein_id AT1G23800.1p  transcript_id AT1G23800.1  
At1g23810	chr1:008417495	0.0	W/8417495-8417637,8417720-8418001,8418103-8418220,8418301-8418402,8418486-8418566	AT1G23810.1 CDS  gene_syn F5O8.36, F5O8_36  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G24250.1); Has 537 Blast hits to 378 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 97; Plants - 161; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G23810.1p  transcript_id AT1G23810.1  protein_id AT1G23810.1p  transcript_id AT1G23810.1  
At1g23820	chr1:008420278	0.0	W/8420278-8420578,8420672-8420748,8420840-8420962,8421618-8421722,8421819-8421891,8421991-8422062,8422168-8422363,8422448-8422571,8422659-8422724	AT1G23820.1 CDS  gene_syn F5O8.38, F5O8_38, SPDS1, spermidine synthase 1  gene SPDS1  function Spermidine synthase.  go_component cellular_component|GO:0005575||ND  go_process spermidine biosynthetic process|GO:0008295|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|IDA  product SPDS1 (spermidine synthase 1); spermidine synthase  note spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS2 (spermidine synthase 2); spermidine synthase (TAIR:AT1G70310.1); Has 3682 Blast hits to 3680 proteins in 919 species: Archae - 109; Bacteria - 1664; Metazoa - 308; Fungi - 127; Plants - 317; Viruses - 0; Other Eukaryotes - 1157 (source: NCBI BLink).  protein_id AT1G23820.1p  transcript_id AT1G23820.1  protein_id AT1G23820.1p  transcript_id AT1G23820.1  
At1g23820	chr1:008420278	0.0	W/8420278-8420578,8420672-8420748,8420840-8420962,8421618-8421722,8421819-8421891,8421991-8422062,8422168-8422367,8422448-8422480	AT1G23820.2 CDS  gene_syn F5O8.38, F5O8_38, SPDS1, spermidine synthase 1  gene SPDS1  function Spermidine synthase.  go_component cellular_component|GO:0005575||ND  go_process spermidine biosynthetic process|GO:0008295|12220656|IDA  go_function spermidine synthase activity|GO:0004766|12220656|IDA  product SPDS1 (spermidine synthase 1); spermidine synthase  note spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: SPDS2 (spermidine synthase 2); spermidine synthase (TAIR:AT1G70310.1); Has 3662 Blast hits to 3662 proteins in 917 species: Archae - 109; Bacteria - 1655; Metazoa - 305; Fungi - 127; Plants - 315; Viruses - 0; Other Eukaryotes - 1151 (source: NCBI BLink).  protein_id AT1G23820.2p  transcript_id AT1G23820.2  protein_id AT1G23820.2p  transcript_id AT1G23820.2  
At1g23830	chr1:008423003	0.0	C/8423003-8424040	AT1G23830.1 CDS  gene_syn F5O8.39, F5O8_39  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 33 Blast hits to 30 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23830.1p  transcript_id AT1G23830.1  protein_id AT1G23830.1p  transcript_id AT1G23830.1  
At1g23840	chr1:008424321	0.0	C/8424321-8425337	AT1G23840.1 CDS  gene_syn F5O8.40, F5O8_40  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23830.1); Has 29 Blast hits to 26 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23840.1p  transcript_id AT1G23840.1  protein_id AT1G23840.1p  transcript_id AT1G23840.1  
At1g23850	chr1:008425981	0.0	C/8425981-8427045	AT1G23850.1 CDS  gene_syn T23E23.1, T23E23_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 23 Blast hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23850.1p  transcript_id AT1G23850.1  protein_id AT1G23850.1p  transcript_id AT1G23850.1  
At1g23860	chr1:008428091	0.0	C/8428091-8428097,8428235-8428330,8428605-8428818,8428915-8429003,8429076-8429164	AT1G23860.3 CDS  gene_syn RS-CONTAINING ZINC FINGER PROTEIN 21, RSZP21, SRZ-21, SRZ21, T23E23.2, T23E23_2  gene RSZP21  function Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.  go_component nucleus|GO:0005634|9761791|IPI  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS  go_function protein binding|GO:0005515|9761791|IPI  product RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21); protein binding  note SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SRZ-22; protein binding (TAIR:AT4G31580.2); Has 3322 Blast hits to 3170 proteins in 257 species: Archae - 0; Bacteria - 136; Metazoa - 1946; Fungi - 225; Plants - 699; Viruses - 6; Other Eukaryotes - 310 (source: NCBI BLink).  protein_id AT1G23860.3p  transcript_id AT1G23860.3  protein_id AT1G23860.3p  transcript_id AT1G23860.3  
At1g23860	chr1:008428091	0.0	C/8428091-8428097,8428235-8428399,8428605-8428818,8428915-8429003,8429076-8429164	AT1G23860.1 CDS  gene_syn RS-CONTAINING ZINC FINGER PROTEIN 21, RSZP21, SRZ-21, SRZ21, T23E23.2, T23E23_2  gene RSZP21  function Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.  go_component nucleus|GO:0005634|9761791|IPI  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS  go_function protein binding|GO:0005515|9761791|IPI  product RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21); protein binding  note RS-CONTAINING ZINC FINGER PROTEIN 21 (RSZP21); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SRZ-22; protein binding (TAIR:AT4G31580.2); Has 5033 Blast hits to 4348 proteins in 291 species: Archae - 0; Bacteria - 144; Metazoa - 3042; Fungi - 362; Plants - 1002; Viruses - 47; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT1G23860.1p  transcript_id AT1G23860.1  protein_id AT1G23860.1p  transcript_id AT1G23860.1  
At1g23860	chr1:008428091	0.0	C/8428091-8428097,8428235-8428399,8428605-8428818,8428915-8429003,8429076-8429164	AT1G23860.2 CDS  gene_syn RS-CONTAINING ZINC FINGER PROTEIN 21, RSZP21, SRZ-21, SRZ21, T23E23.2, T23E23_2  gene RSZP21  function Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.  go_component nucleus|GO:0005634|9761791|IPI  go_component nuclear speck|GO:0016607|15133128|IDA  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|10350090|TAS  go_process nuclear mRNA splicing, via spliceosome|GO:0000398|9761791|TAS  go_function protein binding|GO:0005515|9761791|IPI  product RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21); protein binding  note SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: SRZ-22; protein binding (TAIR:AT4G31580.2); Has 5033 Blast hits to 4348 proteins in 291 species: Archae - 0; Bacteria - 144; Metazoa - 3042; Fungi - 362; Plants - 1002; Viruses - 47; Other Eukaryotes - 436 (source: NCBI BLink).  protein_id AT1G23860.2p  transcript_id AT1G23860.2  protein_id AT1G23860.2p  transcript_id AT1G23860.2  
At1g23870	chr1:008432695	0.0	W/8432695-8434682,8434769-8435042,8435165-8435506	AT1G23870.1 CDS  gene_syn ATTPS9, T23E23.3, T23E23_3, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9  gene ATTPS9  function Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.  go_process trehalose biosynthetic process|GO:0005992||IEA  go_process metabolic process|GO:0008152||IEA  go_process trehalose biosynthetic process|GO:0005992||ISS  go_function trehalose-phosphatase activity|GO:0004805||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product ATTPS9; transferase, transferring glycosyl groups / trehalose-phosphatase  note ATTPS9; FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: ATTPS8; alpha,alpha-trehalose-phosphate synthase (UDP-forming)/ transferase, transferring glycosyl groups / trehalose-phosphatase (TAIR:AT1G70290.1); Has 3147 Blast hits to 3099 proteins in 656 species: Archae - 40; Bacteria - 1667; Metazoa - 205; Fungi - 473; Plants - 358; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).  protein_id AT1G23870.1p  transcript_id AT1G23870.1  protein_id AT1G23870.1p  transcript_id AT1G23870.1  
At1g23880	chr1:008436125	0.0	W/8436125-8436392,8436491-8436577,8436672-8436848,8437238-8437408,8437498-8437710,8437822-8437910,8438004-8438636	AT1G23880.1 CDS  gene_syn T23E23.5, T23E23_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL repeat-containing protein  note NHL repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT1G70280.2); Has 1543 Blast hits to 682 proteins in 117 species: Archae - 74; Bacteria - 770; Metazoa - 76; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 540 (source: NCBI BLink).  protein_id AT1G23880.1p  transcript_id AT1G23880.1  protein_id AT1G23880.1p  transcript_id AT1G23880.1  
At1g23890	chr1:008438900	0.0	C/8438900-8439412,8439498-8439595,8439681-8439881,8440013-8440177,8440494-8440664,8440749-8440803	AT1G23890.2 CDS  gene_syn T23E23.6, T23E23_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL repeat-containing protein  note NHL repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat, subgroup (InterPro:IPR013017), NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT3G14860.2); Has 1921 Blast hits to 831 proteins in 148 species: Archae - 109; Bacteria - 916; Metazoa - 129; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 681 (source: NCBI BLink).  protein_id AT1G23890.2p  transcript_id AT1G23890.2  protein_id AT1G23890.2p  transcript_id AT1G23890.2  
At1g23890	chr1:008439321	0.0	C/8439321-8439416,8439498-8439595,8439681-8439881,8440013-8440177,8440494-8440664,8440749-8440803	AT1G23890.1 CDS  gene_syn T23E23.6, T23E23_6  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product NHL repeat-containing protein  note NHL repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL repeat, subgroup (InterPro:IPR013017), NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL repeat-containing protein (TAIR:AT3G14860.2); Has 1922 Blast hits to 831 proteins in 148 species: Archae - 109; Bacteria - 918; Metazoa - 129; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 680 (source: NCBI BLink).  protein_id AT1G23890.1p  transcript_id AT1G23890.1  protein_id AT1G23890.1p  transcript_id AT1G23890.1  
At1g23900	chr1:008441379	0.0	W/8441379-8441410,8441768-8442070,8442246-8442387,8442486-8442659,8442924-8443103,8443628-8443782,8444017-8444107,8444211-8444374,8444508-8444562,8444715-8444837,8444923-8445018,8445145-8445272,8445519-8445623,8445724-8445986,8446147-8446389,8446479-8446654,8446776-8446880,8447057-8447152	AT1G23900.1 CDS  gene_syn GAMMA-ADAPTIN 1, Gamma-ADR, Gamma-adaptin  gene GAMMA-ADAPTIN 1  function Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component AP-1 adaptor complex|GO:0030121|10229581|ISS  go_process vesicle-mediated transport|GO:0016192|10229581|ISS  go_function clathrin binding|GO:0030276||ISS  product GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter  note GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); FUNCTIONS IN: protein transporter activity, protein binding, clathrin binding, binding; INVOLVED IN: vesicle-mediated transport; LOCATED IN: AP-1 adaptor complex; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G60070.1); Has 2636 Blast hits to 2548 proteins in 191 species: Archae - 0; Bacteria - 2; Metazoa - 1275; Fungi - 618; Plants - 194; Viruses - 0; Other Eukaryotes - 547 (source: NCBI BLink).  protein_id AT1G23900.1p  transcript_id AT1G23900.1  protein_id AT1G23900.1p  transcript_id AT1G23900.1  
At1g23900	chr1:008441379	0.0	W/8441379-8441410,8441768-8442070,8442246-8442387,8442486-8442659,8442924-8443103,8443628-8443782,8444017-8444107,8444211-8444374,8444508-8444562,8444715-8444837,8444923-8445018,8445145-8445272,8445519-8445623,8445724-8445986,8446147-8446389,8446479-8446654,8446776-8446880,8447057-8447152	AT1G23900.2 CDS  gene_syn GAMMA-ADAPTIN 1, Gamma-ADR, Gamma-adaptin  gene GAMMA-ADAPTIN 1  function Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component AP-1 adaptor complex|GO:0030121|10229581|ISS  go_process vesicle-mediated transport|GO:0016192|10229581|ISS  go_function clathrin binding|GO:0030276||ISS  product GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter  note GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); FUNCTIONS IN: protein transporter activity, protein binding, clathrin binding, binding; INVOLVED IN: vesicle-mediated transport; LOCATED IN: AP-1 adaptor complex; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G60070.1); Has 2636 Blast hits to 2548 proteins in 191 species: Archae - 0; Bacteria - 2; Metazoa - 1275; Fungi - 618; Plants - 194; Viruses - 0; Other Eukaryotes - 547 (source: NCBI BLink).  protein_id AT1G23900.2p  transcript_id AT1G23900.2  protein_id AT1G23900.2p  transcript_id AT1G23900.2  
At1g23910	chr1:008451068	0.0	C/8451068-8451289	AT1G23910.1 CDS  gene_syn T23E23.8, T23E23_8  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT1G24000.1); Has 37 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23910.1p  transcript_id AT1G23910.1  protein_id AT1G23910.1p  transcript_id AT1G23910.1  
At1g23920	chr1:008454200	0.0	W/8454200-8456566	AT1G23920.1 mRNA_TE_gene  pseudo  gene_syn T23E23.9  note Transposable element gene, Mutator-like transposase family, has a 3.6e-77 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g23930	chr1:008459082	0.0	C/8459082-8461460	AT1G23930.1 mRNA_TE_gene  pseudo  gene_syn T23E23.10, T23E23_10  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37390.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47330.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048)  
At1g23935	chr1:008461939	0.0	W/8461939-8462007,8462145-8462238,8462316-8462381,8462484-8462524,8462655-8462750,8462828-8462908,8463035-8463100,8463203-8463271,8463559-8463669,8463770-8463862,8463962-8464008,8464116-8464191,8464543-8464824,8464954-8465943	AT1G23935.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 63 Blast hits to 53 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G23935.1p  transcript_id AT1G23935.1  protein_id AT1G23935.1p  transcript_id AT1G23935.1  
At1g23940	chr1:008466094	0.0	W/8466094-8466146,8466383-8466487,8466588-8466799,8466957-8466990,8467362-8467637,8467807-8467948,8468038-8468211,8468460-8468639,8468718-8468845,8469055-8469159,8469268-8469346	AT1G23940.1 CDS  gene_syn T23E23.12, T23E23_12  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  product adaptin family protein  note adaptin family protein; FUNCTIONS IN: protein binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G23900.2); Has 1586 Blast hits to 1227 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 799; Fungi - 299; Plants - 165; Viruses - 0; Other Eukaryotes - 323 (source: NCBI BLink).  protein_id AT1G23940.1p  transcript_id AT1G23940.1  protein_id AT1G23940.1p  transcript_id AT1G23940.1  
At1g23950	chr1:008469712	0.0	C/8469712-8470044,8470135-8470221,8470352-8470512,8470684-8470897,8471003-8471158,8471273-8471353	AT1G23950.5 CDS  gene_syn T23E23.13, T23E23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.2); Has 73 Blast hits to 72 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23950.5p  transcript_id AT1G23950.5  protein_id AT1G23950.5p  transcript_id AT1G23950.5  
At1g23950	chr1:008469712	0.0	C/8469712-8470044,8470135-8470221,8470352-8470602,8470684-8470897,8471003-8471158,8471273-8471353	AT1G23950.2 CDS  gene_syn T23E23.13, T23E23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.2); Has 79 Blast hits to 75 proteins in 2 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23950.2p  transcript_id AT1G23950.2  protein_id AT1G23950.2p  transcript_id AT1G23950.2  
At1g23950	chr1:008469712	0.0	C/8469712-8470044,8470135-8470221,8470352-8470602,8470699-8470897,8471003-8471158,8471273-8471353	AT1G23950.3 CDS  gene_syn T23E23.13, T23E23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.1); Has 79 Blast hits to 75 proteins in 2 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23950.3p  transcript_id AT1G23950.3  protein_id AT1G23950.3p  transcript_id AT1G23950.3  
At1g23950	chr1:008470105	0.0	C/8470105-8470221,8470352-8470602,8470684-8470897,8471003-8471158,8471273-8471353	AT1G23950.1 CDS  gene_syn T23E23.13, T23E23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.2); Has 64 Blast hits to 63 proteins in 2 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23950.1p  transcript_id AT1G23950.1  protein_id AT1G23950.1p  transcript_id AT1G23950.1  
At1g23950	chr1:008470164	0.0	C/8470164-8470215,8470347-8470602,8470684-8470897,8471003-8471158,8471273-8471353	AT1G23950.4 CDS  gene_syn T23E23.13, T23E23_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.2); Has 51 Blast hits to 50 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23950.4p  transcript_id AT1G23950.4  protein_id AT1G23950.4p  transcript_id AT1G23950.4  
At1g23960	chr1:008478627	0.0	C/8478627-8478896,8478992-8479081,8479162-8479289,8479378-8479579,8479672-8479827,8479944-8480006	AT1G23960.1 CDS  gene_syn T23E23.14, T23E23_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.1); Has 74 Blast hits to 73 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23960.1p  transcript_id AT1G23960.1  protein_id AT1G23960.1p  transcript_id AT1G23960.1  
At1g23960	chr1:008478627	0.0	C/8478627-8478896,8478992-8479081,8479162-8479289,8479378-8479579,8479672-8479827,8479944-8480006	AT1G23960.2 CDS  gene_syn T23E23.14, T23E23_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23970.1); Has 74 Blast hits to 73 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23960.2p  transcript_id AT1G23960.2  protein_id AT1G23960.2p  transcript_id AT1G23960.2  
At1g23965	chr1:008480570	0.0	C/8480570-8480923	AT1G23965.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: ATP binding / DNA binding (TAIR:AT1G70270.1).  protein_id AT1G23965.1p  transcript_id AT1G23965.1  protein_id AT1G23965.1p  transcript_id AT1G23965.1  
At1g23970	chr1:008482145	0.0	C/8482145-8482486,8482578-8482664,8482759-8483009,8483091-8483304,8483409-8483564,8483743-8483829	AT1G23970.2 CDS  gene_syn T23E23.26, T23E23_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23950.2); Has 75 Blast hits to 73 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23970.2p  transcript_id AT1G23970.2  protein_id AT1G23970.2p  transcript_id AT1G23970.2  
At1g23970	chr1:008482145	0.0	C/8482145-8482486,8482578-8482664,8482759-8483009,8483106-8483304,8483409-8483564,8483743-8483829	AT1G23970.1 CDS  gene_syn T23E23.26, T23E23_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23950.3); Has 75 Blast hits to 73 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G23970.1p  transcript_id AT1G23970.1  protein_id AT1G23970.1p  transcript_id AT1G23970.1  
At1g23980	chr1:008484879	0.0	C/8484879-8485988	AT1G23980.1 CDS  gene_syn T23E23.15, T23E23_15  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G40250.1); Has 6153 Blast hits to 6137 proteins in 230 species: Archae - 0; Bacteria - 6; Metazoa - 1866; Fungi - 444; Plants - 2699; Viruses - 58; Other Eukaryotes - 1080 (source: NCBI BLink).  protein_id AT1G23980.1p  transcript_id AT1G23980.1  protein_id AT1G23980.1p  transcript_id AT1G23980.1  
At1g23990	chr1:008490634	0.0	W/8490634-8492730	AT1G23990.1 mRNA_TE_gene  pseudo  gene_syn T23E23.16, T23E23_16  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.0e-30 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g24000	chr1:008496057	0.0	C/8496057-8496319,8496421-8496526	AT1G24000.1 CDS  gene_syn T23E23.17, T23E23_17  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product Bet v I allergen family protein  note Bet v I allergen family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, flower, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23910.1); Has 125 Blast hits to 106 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24000.1p  transcript_id AT1G24000.1  protein_id AT1G24000.1p  transcript_id AT1G24000.1  
At1g24010	chr1:008498960	0.0	C/8498960-8499282,8499362-8499464	AT1G24010.1 CDS  gene_syn T23E23.27, T23E23_27  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, guard cell, pedicel, root, carpel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Bet v I allergen family protein (TAIR:AT1G24000.1); Has 23 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24010.1p  transcript_id AT1G24010.1  protein_id AT1G24010.1p  transcript_id AT1G24010.1  
At1g24020	chr1:008500653	0.0	C/8500653-8500933,8501272-8501458	AT1G24020.1 CDS  gene_syn MLP-LIKE PROTEIN 423, MLP423, T23E23.28, T23E23_28  gene MLP423  go_component membrane|GO:0016020|17432890|IDA  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  product MLP423 (MLP-LIKE PROTEIN 423)  note MLP-LIKE PROTEIN 423 (MLP423); INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP34 (MLP-LIKE PROTEIN 34) (TAIR:AT1G70850.3); Has 930 Blast hits to 901 proteins in 105 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 922; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G24020.1p  transcript_id AT1G24020.1  protein_id AT1G24020.1p  transcript_id AT1G24020.1  
At1g24030	chr1:008503394	0.0	W/8503394-8503460,8503602-8503789,8503908-8504106,8504175-8504338,8504428-8504532,8504731-8504853,8504956-8505195	AT1G24030.2 CDS  gene_syn T23E23.18, T23E23_18  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G20530.1); Has 86904 Blast hits to 85876 proteins in 3162 species: Archae - 55; Bacteria - 7909; Metazoa - 37845; Fungi - 6991; Plants - 19027; Viruses - 419; Other Eukaryotes - 14658 (source: NCBI BLink).  protein_id AT1G24030.2p  transcript_id AT1G24030.2  protein_id AT1G24030.2p  transcript_id AT1G24030.2  
At1g24030	chr1:008503394	0.0	W/8503394-8503502,8503602-8503789,8503908-8504106,8504175-8504338,8504428-8504532,8504731-8504853,8504956-8505195	AT1G24030.1 CDS  gene_syn T23E23.18, T23E23_18  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G20530.1); Has 86914 Blast hits to 85888 proteins in 3162 species: Archae - 55; Bacteria - 7907; Metazoa - 37860; Fungi - 6978; Plants - 19048; Viruses - 419; Other Eukaryotes - 14647 (source: NCBI BLink).  protein_id AT1G24030.1p  transcript_id AT1G24030.1  protein_id AT1G24030.1p  transcript_id AT1G24030.1  
At1g24040	chr1:008505794	0.0	C/8505794-8506753	AT1G24040.1 CDS  gene_syn T23E23.19, T23E23_19  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 68 Blast hits to 68 proteins in 27 species: Archae - 9; Bacteria - 18; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G24040.1p  transcript_id AT1G24040.1  protein_id AT1G24040.1p  transcript_id AT1G24040.1  
At1g24040	chr1:008505794	0.0	C/8505794-8506753	AT1G24040.2 CDS  gene_syn T23E23.19, T23E23_19  go_component chloroplast|GO:0009507||IEA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 68 Blast hits to 68 proteins in 27 species: Archae - 9; Bacteria - 18; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G24040.2p  transcript_id AT1G24040.2  protein_id AT1G24040.2p  transcript_id AT1G24040.2  
At1g24050	chr1:008507057	0.0	W/8507057-8507210,8507317-8507482,8507578-8507658,8508143-8508266,8508398-8508439	AT1G24050.1 CDS  gene_syn T23E23.20, T23E23_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70220.1); Has 153 Blast hits to 153 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 34; Plants - 30; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G24050.1p  transcript_id AT1G24050.1  protein_id AT1G24050.1p  transcript_id AT1G24050.1  
At1g24060	chr1:008509376	0.0	C/8509376-8509447,8509760-8510056	AT1G24060.1 CDS  gene_syn T23E23.21, T23E23_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24060.1p  transcript_id AT1G24060.1  protein_id AT1G24060.1p  transcript_id AT1G24060.1  
At1g24062	chr1:008510502	0.0	C/8510502-8510725,8510824-8510896	AT1G24062.1 CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54220.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24062.1p  transcript_id AT1G24062.1  protein_id AT1G24062.1p  transcript_id AT1G24062.1  
At1g24068	chr1:008515506	0.0	W/8515506-8515971	AT1G24068.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24068.1  
At1g24070	chr1:008516437	0.0	C/8516437-8516584,8516660-8516851,8516948-8517147,8517575-8517688,8518079-8518215,8518304-8518414,8518629-8518881,8518965-8519063,8519231-8519569,8519669-8519734	AT1G24070.1 CDS  gene_syn ATCSLA10, CELLULOSE SYNTHASE LIKE A10, CSLA10, T23E23.23, T23E23_23  gene ATCSLA10  function encodes a gene similar to cellulose synthase  go_component endomembrane system|GO:0012505||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLA10; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLA10; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: ATCSLA15; cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT4G13410.1); Has 2949 Blast hits to 2944 proteins in 807 species: Archae - 106; Bacteria - 2169; Metazoa - 30; Fungi - 65; Plants - 297; Viruses - 11; Other Eukaryotes - 271 (source: NCBI BLink).  protein_id AT1G24070.1p  transcript_id AT1G24070.1  protein_id AT1G24070.1p  transcript_id AT1G24070.1  
At1g24080	chr1:008520290	0.0	C/8520290-8520363	AT1G24080.1 tRNA  gene_syn 51237.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT1G24080.1  
At1g24090	chr1:008520834	0.0	W/8520834-8521160,8521251-8521409,8521550-8521624,8521736-8521816,8521923-8522015,8522090-8522233,8522330-8522446,8522571-8522622,8523427-8523606,8524034-8524201,8524479-8524690	AT1G24090.1 CDS  gene_syn T23E23.25  go_function nucleic acid binding|GO:0003676||IEA  go_function ribonuclease H activity|GO:0004523||IEA  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  go_function ribonuclease H activity|GO:0004523||ISS  product RNase H domain-containing protein  note RNase H domain-containing protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 N-terminal-like (InterPro:IPR009027), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156), Putative thiol-disulphide oxidoreductase DCC (InterPro:IPR007263); BEST Arabidopsis thaliana protein match is: RNase H domain-containing protein (TAIR:AT5G51080.2); Has 2445 Blast hits to 2445 proteins in 371 species: Archae - 40; Bacteria - 735; Metazoa - 6; Fungi - 0; Plants - 1153; Viruses - 0; Other Eukaryotes - 511 (source: NCBI BLink).  protein_id AT1G24090.1p  transcript_id AT1G24090.1  protein_id AT1G24090.1p  transcript_id AT1G24090.1  
At1g24100	chr1:008525547	0.0	C/8525547-8526272,8526354-8527010	AT1G24100.1 CDS  gene_syn F3I6.2, F3I6_2, UDP-glucosyl transferase 74B1, UGT74B1  gene UGT74B1  function Encodes a UDP-glucose:thiohydroximate S-glucosyltransferase, involved in glucosinolate biosynthesis  go_component cellular_component|GO:0005575||ND  go_process glucosinolate biosynthetic process|GO:0019761|15584955|IMP  go_process defense response to bacterium|GO:0042742|19095898|IMP  go_process callose deposition in cell wall during defense response|GO:0052544|19095898|IMP  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function thiohydroximate beta-D-glucosyltransferase activity|GO:0047251|15584955|IDA  product UGT74B1 (UDP-glucosyl transferase 74B1); UDP-glycosyltransferase/ thiohydroximate beta-D-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-glucosyl transferase 74B1 (UGT74B1); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, thiohydroximate beta-D-glucosyltransferase activity; INVOLVED IN: glucosinolate biosynthetic process, defense response to bacterium, callose deposition in cell wall during defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucoronosyl/UDP-glucosyl transferase family protein (TAIR:AT1G05680.1); Has 4747 Blast hits to 4710 proteins in 338 species: Archae - 0; Bacteria - 177; Metazoa - 1730; Fungi - 18; Plants - 2692; Viruses - 100; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G24100.1p  transcript_id AT1G24100.1  protein_id AT1G24100.1p  transcript_id AT1G24100.1  
At1g24110	chr1:008527838	0.0	W/8527838-8528818	AT1G24110.1 CDS  gene_syn F3I6.3, F3I6_3  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product peroxidase, putative  note peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, sepal, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT5G47000.1); Has 3151 Blast hits to 3137 proteins in 243 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 302; Plants - 2795; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G24110.1p  transcript_id AT1G24110.1  protein_id AT1G24110.1p  transcript_id AT1G24110.1  
At1g24120	chr1:008529283	0.0	C/8529283-8529579,8529735-8529937,8530058-8530166,8530260-8530349,8530471-8530521,8530606-8530710,8530809-8530920,8531011-8531093,8531381-8531504,8531810-8531946	AT1G24120.1 CDS  gene_syn ARG1-LIKE 1, ARL1, F3I6.4, F3I6_4  gene ARL1  function encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined.  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component cellular_component|GO:0005575||ND  go_process protein folding|GO:0006457||ISS  product ARL1 (ARG1-LIKE 1); heat shock protein binding / unfolded protein binding  note ARG1-LIKE 1 (ARL1); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARL2 (ARG1-LIKE 2); heat shock protein binding / unfolded protein binding (TAIR:AT1G59980.1); Has 17393 Blast hits to 17208 proteins in 1957 species: Archae - 111; Bacteria - 5447; Metazoa - 3871; Fungi - 1630; Plants - 1268; Viruses - 13; Other Eukaryotes - 5053 (source: NCBI BLink).  protein_id AT1G24120.1p  transcript_id AT1G24120.1  protein_id AT1G24120.1p  transcript_id AT1G24120.1  
At1g24130	chr1:008534183	0.0	C/8534183-8535430	AT1G24130.1 CDS  gene_syn F3I6.5, F3I6_5  go_component chloroplast|GO:0009507||IEA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G50120.1); Has 33915 Blast hits to 16327 proteins in 570 species: Archae - 40; Bacteria - 4362; Metazoa - 14549; Fungi - 6756; Plants - 3137; Viruses - 0; Other Eukaryotes - 5071 (source: NCBI BLink).  protein_id AT1G24130.1p  transcript_id AT1G24130.1  protein_id AT1G24130.1p  transcript_id AT1G24130.1  
At1g24140	chr1:008536131	0.0	C/8536131-8537285	AT1G24140.1 CDS  gene_syn F3I6.6, F3I6_6  go_process proteolysis|GO:0006508||IEA  go_process metabolic process|GO:0008152||IEA  go_function metalloendopeptidase activity|GO:0004222||IEA  go_function metallopeptidase activity|GO:0008237||IEA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process proteolysis|GO:0006508||ISS  go_function metalloendopeptidase activity|GO:0004222||ISS  product matrixin family protein  note matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10A and M12B, matrixin and adamalysin (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase, metallopeptidases (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: MMP (MATRIX METALLOPROTEINASE); metalloendopeptidase/ metallopeptidase (TAIR:AT1G70170.1); Has 2158 Blast hits to 1980 proteins in 154 species: Archae - 3; Bacteria - 54; Metazoa - 1889; Fungi - 2; Plants - 83; Viruses - 37; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G24140.1p  transcript_id AT1G24140.1  protein_id AT1G24140.1p  transcript_id AT1G24140.1  
At1g24145	chr1:008541040	0.0	W/8541040-8541148,8541339-8541616	AT1G24145.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24145.1p  transcript_id AT1G24145.1  protein_id AT1G24145.1p  transcript_id AT1G24145.1  
At1g24147	chr1:008542522	0.0	W/8542522-8542624,8543026-8543306	AT1G24147.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24147.1p  transcript_id AT1G24147.1  protein_id AT1G24147.1p  transcript_id AT1G24147.1  
At1g24148	chr1:008544420	0.0	W/8544420-8545551	AT1G24148.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24148.1  
At1g24150	chr1:008549518	0.0	W/8549518-8550536,8550639-8551116,8551230-8551910	AT1G24150.1 CDS  gene_syn ATFH4, F3I6.8, F3I6_8, FH4, FORMIN HOMOLOGUE 4  gene FH4  function Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cell-cell junction|GO:0005911|16313636|IDA  go_process actin filament polymerization|GO:0030041|16313636|IDA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  go_function protein binding|GO:0005515|16313636|IPI  product FH4 (FORMIN HOMOLOGUE 4); actin binding / protein binding  note FORMIN HOMOLOGUE 4 (FH4); FUNCTIONS IN: protein binding, actin binding; INVOLVED IN: actin filament polymerization; LOCATED IN: cell-cell junction, plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: ATFH8 (formin 8); actin binding / actin filament binding / profilin binding (TAIR:AT1G70140.1); Has 26280 Blast hits to 13658 proteins in 777 species: Archae - 44; Bacteria - 2836; Metazoa - 9808; Fungi - 2901; Plants - 6267; Viruses - 1292; Other Eukaryotes - 3132 (source: NCBI BLink).  protein_id AT1G24150.1p  transcript_id AT1G24150.1  protein_id AT1G24150.1p  transcript_id AT1G24150.1  
At1g24159	chr1:008552775	0.0	W/8552775-8552896,8553085-8553385	AT1G24159.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: lectin protein kinase, putative (TAIR:AT1G70130.1).  protein_id AT1G24159.1p  transcript_id AT1G24159.1  protein_id AT1G24159.1p  transcript_id AT1G24159.1  
At1g24160	chr1:008553669	0.0	C/8553669-8553785,8553858-8553914,8554001-8554106,8554208-8554266,8554344-8554784,8554889-8555689,8555789-8555830	AT1G24160.1 CDS  gene_syn F3I6.9, F3I6_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70100.3); Has 4520 Blast hits to 3464 proteins in 329 species: Archae - 12; Bacteria - 317; Metazoa - 1888; Fungi - 343; Plants - 154; Viruses - 31; Other Eukaryotes - 1775 (source: NCBI BLink).  protein_id AT1G24160.1p  transcript_id AT1G24160.1  protein_id AT1G24160.1p  transcript_id AT1G24160.1  
At1g24170	chr1:008557451	0.0	C/8557451-8558632	AT1G24170.1 CDS  gene_syn F3I6.10, F3I6_10, GALACTURONOSYLTRANSFERASE-LIKE 8, GATL8, LGT9  gene LGT9  function Encodes a protein with putative galacturonosyltransferase activity.  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate biosynthetic process|GO:0016051||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  go_function polygalacturonate 4-alpha-galacturonosyltransferase activity|GO:0047262|16540543|ISS  product LGT9; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note LGT9; FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: LGT8 (GLUCOSYL TRANSFERASE FAMILY 8); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (TAIR:AT1G70090.2); Has 1201 Blast hits to 1195 proteins in 229 species: Archae - 0; Bacteria - 508; Metazoa - 189; Fungi - 2; Plants - 419; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).  protein_id AT1G24170.1p  transcript_id AT1G24170.1  protein_id AT1G24170.1p  transcript_id AT1G24170.1  
At1g24180	chr1:008560777	0.0	C/8560777-8560821,8560939-8561004,8561087-8561140,8561248-8561319,8561413-8561508,8562054-8562131,8562529-8562608,8562692-8563382	AT1G24180.1 CDS  gene_syn F3I6.11, F3I6_11, IAR4  gene IAR4  function Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900  go_component mitochondrion|GO:0005739|18385124|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||IEA  go_function oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor|GO:0016624||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component mitochondrion|GO:0005739|11743115|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process metabolic process|GO:0008152||ISS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS  product IAR4; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring)  note IAR4; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: response to salt stress, metabolic process; LOCATED IN: cytosol, mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: AT-E1 ALPHA; oxidoreductase, acting on the aldehyde or oxo group of donors, disulfide as acceptor / pyruvate dehydrogenase (acetyl-transferring) (TAIR:AT1G59900.1); Has 6617 Blast hits to 6614 proteins in 1048 species: Archae - 46; Bacteria - 3131; Metazoa - 505; Fungi - 168; Plants - 119; Viruses - 0; Other Eukaryotes - 2648 (source: NCBI BLink).  protein_id AT1G24180.1p  transcript_id AT1G24180.1  protein_id AT1G24180.1p  transcript_id AT1G24180.1  
At1g24190	chr1:008563858	0.0	C/8563858-8563986,8564086-8564188,8564282-8564448,8564542-8564694,8564786-8564924,8565013-8565113,8565216-8565827,8566069-8566154,8566249-8566893,8566970-8567224,8567337-8567464,8567602-8567756,8567850-8568051,8568210-8568264,8568353-8568428,8568507-8568637,8568735-8569029,8569119-8569253,8569330-8569428,8569515-8569701,8569788-8569996	AT1G24190.1 CDS  gene_syn ARABIDOPSIS THALIANA SIN3 HOMOLOG, ATSIN3, F3I6.12, F3I6_12, SIN3, SIN3-LIKE 3, SNL3  gene SNL3  function Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19.  go_component nucleus|GO:0005634||IEA  go_component endomembrane system|GO:0012505||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to abscisic acid stimulus|GO:0009737|15994908|IMP  go_process negative regulation of transcription|GO:0016481|15994908|IEP  go_function transcription repressor activity|GO:0016564|15994908|IEP  product SNL3 (SIN3-LIKE 3); transcription repressor  note SIN3-LIKE 3 (SNL3); FUNCTIONS IN: transcription repressor activity; INVOLVED IN: negative regulation of transcription, response to abscisic acid stimulus, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL4 (SIN3-LIKE 4) (TAIR:AT1G70060.1); Has 2584 Blast hits to 1405 proteins in 254 species: Archae - 17; Bacteria - 144; Metazoa - 1173; Fungi - 550; Plants - 225; Viruses - 28; Other Eukaryotes - 447 (source: NCBI BLink).  protein_id AT1G24190.1p  transcript_id AT1G24190.1  protein_id AT1G24190.1p  transcript_id AT1G24190.1  
At1g24200	chr1:008571173	0.0	C/8571173-8571277,8571631-8571699,8571779-8571877,8571963-8572140,8572238-8572377	AT1G24200.1 CDS  gene_syn F3I6.13, F3I6_13  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SNL3 (SIN3-LIKE 3); transcription repressor (TAIR:AT1G24190.1); Has 797 Blast hits to 422 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 397; Fungi - 245; Plants - 131; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G24200.1p  transcript_id AT1G24200.1  protein_id AT1G24200.1p  transcript_id AT1G24200.1  
At1g24210	chr1:008573770	0.0	C/8573770-8573871,8573973-8574074,8574175-8574298,8574388-8574527	AT1G24210.1 CDS  gene_syn F3I6.14, F3I6_14  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G27240.1); Has 383 Blast hits to 359 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 74; Plants - 117; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G24210.1p  transcript_id AT1G24210.1  protein_id AT1G24210.1p  transcript_id AT1G24210.1  
At1g24212	chr1:008575876	0.0	C/8575876-8576245	AT1G24212.1 pseudogenic_transcript  pseudo  function pseudogene of paired amphipathic helix repeat-containing protein  
At1g24220	chr1:008578658	0.0	C/8578658-8578762,8578845-8578946,8579072-8579495,8579592-8579753,8580065-8580167,8580583-8580676,8580759-8580860,8580948-8581464,8581574-8581866,8581974-8582166,8582274-8582413	AT1G24220.1 CDS  gene_syn F3I6.15, F3I6_15  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G27240.1); Has 1140 Blast hits to 418 proteins in 120 species: Archae - 0; Bacteria - 6; Metazoa - 497; Fungi - 229; Plants - 354; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).  protein_id AT1G24220.1p  transcript_id AT1G24220.1  protein_id AT1G24220.1p  transcript_id AT1G24220.1  
At1g24230	chr1:008584039	0.0	C/8584039-8584143,8584224-8584325,8584421-8584595,8584708-8584920,8584993-8585135	AT1G24230.1 CDS  gene_syn F3I6.16, F3I6_16  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G23810.1); Has 810 Blast hits to 442 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 343; Fungi - 237; Plants - 200; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).  protein_id AT1G24230.1p  transcript_id AT1G24230.1  protein_id AT1G24230.1p  transcript_id AT1G24230.1  
At1g24240	chr1:008586431	0.0	W/8586431-8586640,8587154-8587285,8587365-8587451,8587556-8587689,8587865-8587970	AT1G24240.1 CDS  gene_syn F3I6.17, F3I6_17  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L19 family protein  note ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: ribosomal protein L19 family protein (TAIR:AT4G11630.1); Has 5360 Blast hits to 5360 proteins in 1482 species: Archae - 0; Bacteria - 2918; Metazoa - 87; Fungi - 39; Plants - 95; Viruses - 0; Other Eukaryotes - 2221 (source: NCBI BLink).  protein_id AT1G24240.1p  transcript_id AT1G24240.1  protein_id AT1G24240.1p  transcript_id AT1G24240.1  
At1g24250	chr1:008588442	0.0	C/8588442-8588522,8588606-8588707,8588788-8588905,8589007-8589321,8589404-8589546	AT1G24250.1 CDS  gene_syn F3I6.18, F3I6_18  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G23810.1); Has 634 Blast hits to 372 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 326; Fungi - 142; Plants - 151; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G24250.1p  transcript_id AT1G24250.1  protein_id AT1G24250.1p  transcript_id AT1G24250.1  
At1g24256	chr1:008592078	0.0	W/8592078-8592176,8592395-8592466,8592548-8592739,8592921-8592989	AT1G24256.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF537 (InterPro:IPR007491); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35640.1).  protein_id AT1G24256.1p  transcript_id AT1G24256.1  protein_id AT1G24256.1p  transcript_id AT1G24256.1  
At1g24260	chr1:008593790	0.0	C/8593790-8593880,8593973-8594115,8594201-8594242,8594326-8594367,8594446-8594545,8594630-8594697,8594807-8594891,8595678-8595862	AT1G24260.2 CDS  gene_syn AGAMOUS-LIKE 9, AGL9, F3I6.19, F3I6_19, SEP3, SEPALLATA3, TRANSCRIPTION FACTOR AGL9  gene SEP3  function Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.  go_component nucleus|GO:0005634|14617066|IDA  go_process cell fate specification|GO:0001708|10821278|IMP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process flower development|GO:0009908|11439126|TAS  go_process specification of floral organ identity|GO:0010093|10821278|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function DNA binding|GO:0003677|19033361|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11439126|TAS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  go_function protein binding|GO:0005515|16854969|IPI  product SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor  note SEPALLATA3 (SEP3); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: flower development, cell fate specification, specification of floral organ identity, regulation of transcription, DNA-dependent, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.1); Has 5346 Blast hits to 5344 proteins in 697 species: Archae - 0; Bacteria - 2; Metazoa - 556; Fungi - 203; Plants - 4525; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).  protein_id AT1G24260.2p  transcript_id AT1G24260.2  protein_id AT1G24260.2p  transcript_id AT1G24260.2  
At1g24260	chr1:008593790	0.0	C/8593790-8593880,8593973-8594115,8594201-8594242,8594326-8594367,8594446-8594545,8594630-8594697,8594810-8594891,8595678-8595862	AT1G24260.1 CDS  gene_syn AGAMOUS-LIKE 9, AGL9, F3I6.19, F3I6_19, SEP3, SEPALLATA3, TRANSCRIPTION FACTOR AGL9  gene SEP3  function Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.  go_component nucleus|GO:0005634|14617066|IDA  go_process cell fate specification|GO:0001708|10821278|IMP  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process flower development|GO:0009908|11439126|TAS  go_process specification of floral organ identity|GO:0010093|10821278|IMP  go_process ovule development|GO:0048481|14555696|IMP  go_function DNA binding|GO:0003677|19033361|IDA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11439126|TAS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function protein binding|GO:0005515|14555696|IPI  go_function protein binding|GO:0005515|16854969|IPI  product SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor  note SEPALLATA3 (SEP3); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: flower development, cell fate specification, specification of floral organ identity, regulation of transcription, DNA-dependent, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: SEP1 (SEPALLATA1); DNA binding / transcription factor (TAIR:AT5G15800.1); Has 5372 Blast hits to 5370 proteins in 697 species: Archae - 0; Bacteria - 2; Metazoa - 554; Fungi - 203; Plants - 4557; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).  protein_id AT1G24260.1p  transcript_id AT1G24260.1  protein_id AT1G24260.1p  transcript_id AT1G24260.1  
At1g24265	chr1:008600613	0.0	W/8600613-8600655,8601005-8601078,8601177-8601254,8601382-8601457,8601783-8601847,8602049-8602150,8602347-8602436,8602540-8602614,8602719-8602751,8602828-8602902,8602994-8603056,8603181-8603249,8603330-8603374,8603472-8603630	AT1G24265.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24267.1); Has 115 Blast hits to 113 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G24265.1p  transcript_id AT1G24265.1  protein_id AT1G24265.1p  transcript_id AT1G24265.1  
At1g24265	chr1:008600613	0.0	W/8600613-8600655,8601005-8601078,8601177-8601254,8601382-8601457,8601783-8601847,8602049-8602150,8602347-8602436,8602540-8602614,8602719-8602751,8602828-8602902,8602994-8603056,8603181-8603249,8603330-8603374,8603472-8603630	AT1G24265.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24267.1); Has 115 Blast hits to 113 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G24265.2p  transcript_id AT1G24265.2  protein_id AT1G24265.2p  transcript_id AT1G24265.2  
At1g24267	chr1:008604451	0.0	C/8604451-8604594,8604691-8604735,8604815-8604883,8604998-8605060,8605154-8605228,8605313-8605335,8605428-8605515,8605617-8605706,8605848-8605949,8606170-8606234,8606311-8606386,8606508-8606585,8606669-8606742,8607199-8607241	AT1G24267.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24265.2); Has 88 Blast hits to 86 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 85; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G24267.2p  transcript_id AT1G24267.2  protein_id AT1G24267.2p  transcript_id AT1G24267.2  
At1g24267	chr1:008604451	0.0	C/8604451-8604594,8604691-8604735,8604815-8604883,8604998-8605060,8605154-8605228,8605313-8605345,8605441-8605515,8605617-8605706,8605848-8605949,8606170-8606234,8606311-8606386,8606508-8606585,8606669-8606742,8607199-8607241	AT1G24267.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24265.2); Has 87 Blast hits to 85 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24267.1p  transcript_id AT1G24267.1  protein_id AT1G24267.1p  transcript_id AT1G24267.1  
At1g24270	chr1:008608123	0.0	C/8608123-8608743	AT1G24270.1 CDS  gene_syn F3I6.21, F3I6_21  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13090.1); Has 46 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24270.1p  transcript_id AT1G24270.1  protein_id AT1G24270.1p  transcript_id AT1G24270.1  
At1g24280	chr1:008609495	0.0	W/8609495-8609708,8609907-8610124,8610209-8610303,8610415-8610529,8610801-8611006,8611092-8611241,8611329-8611449,8611523-8611752,8611827-8612027,8612134-8612383	AT1G24280.1 CDS  gene_syn F3I6.22, F3I6_22, G6PD3, GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3  gene G6PD3  function Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.  go_component chloroplast|GO:0009507|15634201|ISS  go_process glucose metabolic process|GO:0006006|15634201|IDA  go_process glucose metabolic process|GO:0006006||ISS  go_process pentose-phosphate shunt, oxidative branch|GO:0009051|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345|15634201|IDA  go_function glucose-6-phosphate dehydrogenase activity|GO:0004345||ISS  product G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3); glucose-6-phosphate dehydrogenase  note GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3 (G6PD3); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: pentose-phosphate shunt, oxidative branch, glucose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282); BEST Arabidopsis thaliana protein match is: G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2); glucose-6-phosphate dehydrogenase (TAIR:AT5G13110.1); Has 5506 Blast hits to 5494 proteins in 1287 species: Archae - 0; Bacteria - 3296; Metazoa - 673; Fungi - 121; Plants - 280; Viruses - 2; Other Eukaryotes - 1134 (source: NCBI BLink).  protein_id AT1G24280.1p  transcript_id AT1G24280.1  protein_id AT1G24280.1p  transcript_id AT1G24280.1  
At1g24290	chr1:008612650	0.0	C/8612650-8614227	AT1G24290.1 CDS  gene_syn F3I6.23, F3I6_23  go_function nucleotide binding|GO:0000166||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_function ATP binding|GO:0005524||ISS  product AAA-type ATPase family protein  note AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), ATPase, AAA-type, core (InterPro:IPR003959), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: replication factor C 36 kDA, putative (TAIR:AT1G77470.1); Has 14020 Blast hits to 13994 proteins in 1675 species: Archae - 392; Bacteria - 8113; Metazoa - 478; Fungi - 462; Plants - 133; Viruses - 43; Other Eukaryotes - 4399 (source: NCBI BLink).  protein_id AT1G24290.1p  transcript_id AT1G24290.1  protein_id AT1G24290.1p  transcript_id AT1G24290.1  
At1g24300	chr1:008614515	0.0	C/8614515-8614771,8614860-8615005,8615116-8615161,8615284-8617452,8617617-8618327,8618465-8618563,8618662-8618752,8618879-8619709,8619865-8619935,8620354-8620420	AT1G24300.1 CDS  gene_syn F3I6.24, F3I6_24  go_component chloroplast|GO:0009507|15028209|IDA  product unknown protein  note LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G27430.1); Has 21766 Blast hits to 10819 proteins in 514 species: Archae - 0; Bacteria - 738; Metazoa - 8216; Fungi - 1952; Plants - 1070; Viruses - 89; Other Eukaryotes - 9701 (source: NCBI BLink).  protein_id AT1G24300.1p  transcript_id AT1G24300.1  protein_id AT1G24300.1p  transcript_id AT1G24300.1  
At1g24310	chr1:008624192	0.0	W/8624192-8624581,8624664-8624717,8624804-8624863,8624998-8625108,8625284-8625349,8625435-8625521,8625623-8625724,8625802-8625951,8626066-8626179	AT1G24310.1 CDS  gene_syn F3I6.25, F3I6_25  go_component nucleolus|GO:0005730|15496452|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2665 Blast hits to 2221 proteins in 198 species: Archae - 0; Bacteria - 36; Metazoa - 1026; Fungi - 539; Plants - 312; Viruses - 11; Other Eukaryotes - 741 (source: NCBI BLink).  protein_id AT1G24310.1p  transcript_id AT1G24310.1  protein_id AT1G24310.1p  transcript_id AT1G24310.1  
At1g24320	chr1:008626437	0.0	C/8626437-8626581,8626659-8626832,8626911-8627002,8627121-8627270,8627376-8627432,8627512-8627565,8627644-8627793,8627939-8628006,8628163-8628288,8628380-8628453,8628546-8628653,8628737-8628858,8628933-8629040,8629135-8629217,8629424-8629520,8629641-8629709,8629822-8629908,8629993-8630413,8630672-8630745,8630825-8630935	AT1G24320.1 CDS  gene_syn F3I6.26, F3I6_26  go_process oligosaccharide metabolic process|GO:0009311||IEA  go_function catalytic activity|GO:0003824||IEA  go_function mannosyl-oligosaccharide glucosidase activity|GO:0004573||IEA  go_component cellular_component|GO:0005575||ND  go_function alpha-glucosidase activity|GO:0004558||ISS  product alpha-glucosidase, putative  note alpha-glucosidase, putative; FUNCTIONS IN: mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity; INVOLVED IN: oligosaccharide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: GCS1 (GLUCOSIDASE 1); alpha-glucosidase (TAIR:AT1G67490.1); Has 308 Blast hits to 306 proteins in 127 species: Archae - 2; Bacteria - 40; Metazoa - 96; Fungi - 85; Plants - 23; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G24320.1p  transcript_id AT1G24320.1  protein_id AT1G24320.1p  transcript_id AT1G24320.1  
At1g24330	chr1:008631779	0.0	W/8631779-8631829,8632187-8632372,8632463-8632570,8632722-8633884,8634028-8634835	AT1G24330.1 CDS  gene_syn F3I6.27, F3I6_27  go_component chloroplast|GO:0009507|18431481|IDA  go_process protein ubiquitination|GO:0016567||IEA  go_function ubiquitin-protein ligase activity|GO:0004842||IEA  go_function binding|GO:0005488||IEA  product armadillo/beta-catenin repeat family protein / U-box domain-containing family protein  note armadillo/beta-catenin repeat family protein / U-box domain-containing family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing family protein (TAIR:AT1G67530.2); Has 1801 Blast hits to 1748 proteins in 168 species: Archae - 0; Bacteria - 38; Metazoa - 336; Fungi - 98; Plants - 1126; Viruses - 3; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G24330.1p  transcript_id AT1G24330.1  protein_id AT1G24330.1p  transcript_id AT1G24330.1  
At1g24340	chr1:008635416	0.0	W/8635416-8635620,8635735-8635817,8635906-8636041,8636154-8636647,8636757-8636804,8636949-8637123,8637476-8637588,8637675-8637771,8637856-8638075,8638308-8638866	AT1G24340.1 CDS  gene_syn F3I6.28, F3I6_28, emb2421, embryo defective 2421  gene emb2421  go_function monooxygenase activity|GO:0004497||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  go_function monooxygenase activity|GO:0004497||ISS  product emb2421 (embryo defective 2421); monooxygenase/ oxidoreductase  note embryo defective 2421 (emb2421); FUNCTIONS IN: oxidoreductase activity, monooxygenase activity; INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-ring hydroxylase-like (InterPro:IPR003042), Monooxygenase, FAD-binding (InterPro:IPR002938); Has 3629 Blast hits to 3559 proteins in 694 species: Archae - 0; Bacteria - 2263; Metazoa - 15; Fungi - 561; Plants - 20; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink).  protein_id AT1G24340.1p  transcript_id AT1G24340.1  protein_id AT1G24340.1p  transcript_id AT1G24340.1  
At1g24350	chr1:008639098	0.0	C/8639098-8639172,8639506-8639598,8639737-8639787,8639874-8640030,8640183-8640313	AT1G24350.1 CDS  gene_syn F3I6.29, F3I6_29  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 626 Blast hits to 626 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT1G24350.1p  transcript_id AT1G24350.1  protein_id AT1G24350.1p  transcript_id AT1G24350.1  
At1g24350	chr1:008639407	0.0	C/8639407-8639418,8639506-8639598,8639737-8639787,8639874-8640030,8640183-8640313	AT1G24350.2 CDS  gene_syn F3I6.29, F3I6_29  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 622 Blast hits to 622 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G24350.2p  transcript_id AT1G24350.2  protein_id AT1G24350.2p  transcript_id AT1G24350.2  
At1g24360	chr1:008640820	0.0	W/8640820-8640982,8641069-8641211,8641451-8641504,8641945-8642025,8642106-8642151,8642220-8642314,8642390-8642422,8642626-8642760,8642857-8642950,8643077-8643159,8643251-8643283	AT1G24360.1 CDS  gene_syn F21J9.2  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process fatty acid biosynthetic process|GO:0006633||IEA  go_process metabolic process|GO:0008152||IEA  go_function 3-oxoacyl-[acyl-carrier-protein] reductase activity|GO:0004316|1575676|ISS  product 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase  note 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase; FUNCTIONS IN: 3-oxoacyl-[acyl-carrier-protein] reductase activity; INVOLVED IN: metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxoacyl-(acyl-carrier-protein) reductase (InterPro:IPR011284), NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: tropinone reductase, putative / tropine dehydrogenase, putative (TAIR:AT2G29370.1); Has 91644 Blast hits to 91258 proteins in 2522 species: Archae - 487; Bacteria - 47655; Metazoa - 7037; Fungi - 4959; Plants - 1790; Viruses - 5; Other Eukaryotes - 29711 (source: NCBI BLink).  protein_id AT1G24360.1p  transcript_id AT1G24360.1  protein_id AT1G24360.1p  transcript_id AT1G24360.1  
At1g24370	chr1:008643761	0.0	C/8643761-8645626	AT1G24370.1 mRNA_TE_gene  pseudo  gene_syn F21J9.3  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1); similar to Os01g0180200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042205.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93896.1); similar to ribosomal protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD23759.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966)  
At1g24380	chr1:008646625	0.0	W/8646625-8646777,8646881-8647609	AT1G24380.1 CDS  gene_syn F21J9.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10230.1); Has 131 Blast hits to 129 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 16; Fungi - 6; Plants - 69; Viruses - 2; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G24380.1p  transcript_id AT1G24380.1  protein_id AT1G24380.1p  transcript_id AT1G24380.1  
At1g24388	chr1:008648099	0.0	C/8648099-8648311,8648402-8648530,8648623-8648694	AT1G24388.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17700.1); Has 44 Blast hits to 43 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24388.1p  transcript_id AT1G24388.1  protein_id AT1G24388.1p  transcript_id AT1G24388.1  
At1g24390	chr1:008648201	0.0	W/8648201-8648272,8648426-8648580,8648768-8648834	AT1G24390.1 CDS  gene_syn F21J9.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24390.1p  transcript_id AT1G24390.1  protein_id AT1G24390.1p  transcript_id AT1G24390.1  
At1g24400	chr1:008651563	0.0	C/8651563-8651661,8651771-8651839,8651931-8652022,8652120-8652225,8652311-8652704,8652912-8653295,8653380-8653561	AT1G24400.1 CDS  gene_syn AATL2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, F21J9.6, LHT2, LYSINE HISTIDINE TRANSPORTER 2  gene LHT2  function High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  go_function acidic amino acid transmembrane transporter activity|GO:0015172|15361141|IGI  go_function neutral amino acid transmembrane transporter activity|GO:0015175|15361141|IGI  product LHT2 (LYSINE HISTIDINE TRANSPORTER 2); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter  note LYSINE HISTIDINE TRANSPORTER 2 (LHT2); FUNCTIONS IN: neutral amino acid transmembrane transporter activity, acidic amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine and histidine specific transporter, putative (TAIR:AT1G67640.1); Has 2921 Blast hits to 2915 proteins in 235 species: Archae - 7; Bacteria - 103; Metazoa - 1067; Fungi - 483; Plants - 881; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).  protein_id AT1G24400.1p  transcript_id AT1G24400.1  protein_id AT1G24400.1p  transcript_id AT1G24400.1  
At1g24405	chr1:008655253	0.0	W/8655253-8655438	AT1G24405.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24405.1p  transcript_id AT1G24405.1  protein_id AT1G24405.1p  transcript_id AT1G24405.1  
At1g24420	chr1:008656687	0.0	W/8656687-8657997	AT1G24420.1 CDS  gene_syn F21J9.8  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT4G15390.1); Has 1270 Blast hits to 1267 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 133; Plants - 1137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24420.1p  transcript_id AT1G24420.1  protein_id AT1G24420.1p  transcript_id AT1G24420.1  
At1g24430	chr1:008658190	0.0	C/8658190-8659497	AT1G24430.1 CDS  gene_syn F21J9.9  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_function transferase activity|GO:0016740||ISS  product transferase/ transferase, transferring acyl groups other than amino-acyl groups  note transferase/ transferase, transferring acyl groups other than amino-acyl groups; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT3G26040.1); Has 920 Blast hits to 920 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 903; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24430.1p  transcript_id AT1G24430.1  protein_id AT1G24430.1p  transcript_id AT1G24430.1  
At1g24440	chr1:008662340	0.0	W/8662340-8662419,8662897-8663053,8663179-8663245,8663326-8663777	AT1G24440.1 CDS  gene_syn F21J9.10  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G13195.1); Has 586 Blast hits to 585 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 244; Fungi - 42; Plants - 157; Viruses - 27; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G24440.1p  transcript_id AT1G24440.1  protein_id AT1G24440.1p  transcript_id AT1G24440.1  
At1g24450	chr1:008664201	0.0	W/8664201-8664278,8664376-8664464,8664669-8665077	AT1G24450.1 CDS  gene_syn F21J9.11, NFD2, NUCLEAR FUSION DEFECTIVE 2  gene NFD2  go_component vacuole|GO:0005773|15539469|IDA  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease III activity|GO:0004525||IEA  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  go_function ribonuclease III activity|GO:0004525||ISS  product NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III  note NUCLEAR FUSION DEFECTIVE 2 (NFD2); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); Has 1405 Blast hits to 1405 proteins in 451 species: Archae - 3; Bacteria - 885; Metazoa - 2; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).  protein_id AT1G24450.1p  transcript_id AT1G24450.1  protein_id AT1G24450.1p  transcript_id AT1G24450.1  
At1g24460	chr1:008666072	0.0	W/8666072-8666173,8666264-8666395,8666499-8669753,8670080-8670778,8670841-8670910,8671007-8671656,8671820-8671967,8672064-8672145,8672236-8672338	AT1G24460.1 CDS  gene_syn F21J9.12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1); Has 146166 Blast hits to 64397 proteins in 2264 species: Archae - 2251; Bacteria - 28256; Metazoa - 66049; Fungi - 10658; Plants - 5728; Viruses - 891; Other Eukaryotes - 32333 (source: NCBI BLink).  protein_id AT1G24460.1p  transcript_id AT1G24460.1  protein_id AT1G24460.1p  transcript_id AT1G24460.1  
At1g24470	chr1:008674056	0.0	W/8674056-8674398,8674947-8675232,8675835-8675904,8676038-8676277	AT1G24470.1 CDS  gene_syn F21J9.13  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function oxidoreductase activity|GO:0016491||ISS  go_function ketoreductase activity|GO:0045703|11792704|IDA  product short-chain dehydrogenase/reductase (SDR) family protein  note short-chain dehydrogenase/reductase (SDR) family protein; FUNCTIONS IN: oxidoreductase activity, ketoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: YBR159; ketoreductase/ oxidoreductase (TAIR:AT1G67730.1); Has 53244 Blast hits to 53177 proteins in 1952 species: Archae - 364; Bacteria - 31727; Metazoa - 4176; Fungi - 2112; Plants - 1193; Viruses - 0; Other Eukaryotes - 13672 (source: NCBI BLink).  protein_id AT1G24470.1p  transcript_id AT1G24470.1  protein_id AT1G24470.1p  transcript_id AT1G24470.1  
At1g24480	chr1:008676440	0.0	C/8676440-8677159	AT1G24480.1 CDS  gene_syn F21J9.14  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function methyltransferase activity|GO:0008168||IEA  product methyltransferase  note methyltransferase; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT4G24805.1); Has 207 Blast hits to 207 proteins in 37 species: Archae - 2; Bacteria - 47; Metazoa - 0; Fungi - 6; Plants - 107; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).  protein_id AT1G24480.1p  transcript_id AT1G24480.1  protein_id AT1G24480.1p  transcript_id AT1G24480.1  
At1g24485	chr1:008678858	0.0	W/8678858-8678939,8679034-8679559,8679857-8680464,8681004-8681063,8681326-8681475,8681600-8681670	AT1G24485.2 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 918 Blast hits to 887 proteins in 141 species: Archae - 0; Bacteria - 157; Metazoa - 120; Fungi - 46; Plants - 448; Viruses - 15; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G24485.2p  transcript_id AT1G24485.2  protein_id AT1G24485.2p  transcript_id AT1G24485.2  
At1g24485	chr1:008678858	0.0	W/8678858-8678939,8679034-8679559,8679857-8680464,8681004-8681063,8681326-8681479,8681600-8681894	AT1G24485.3 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1).  protein_id AT1G24485.3p  transcript_id AT1G24485.3  protein_id AT1G24485.3p  transcript_id AT1G24485.3  
At1g24485	chr1:008678858	0.0	W/8678858-8678939,8679034-8679559,8679857-8680464,8681326-8681475,8681600-8681670	AT1G24485.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 842 Blast hits to 816 proteins in 138 species: Archae - 2; Bacteria - 146; Metazoa - 81; Fungi - 37; Plants - 455; Viruses - 2; Other Eukaryotes - 119 (source: NCBI BLink).  protein_id AT1G24485.1p  transcript_id AT1G24485.1  protein_id AT1G24485.1p  transcript_id AT1G24485.1  
At1g24490	chr1:008682364	0.0	W/8682364-8682690,8682773-8682883,8682966-8683040,8683284-8683344,8683430-8683503,8683593-8683697,8683887-8683994,8684170-8684273,8684353-8684583,8684663-8684966	AT1G24490.1 CDS  gene_syn ALB4, ALBINA 4, F21J9.16  gene ALB4  function Homologue of the Alb3/Oxa1/YidC family. ALB4 is almost identical to the Alb3/Oxa1/YidC domain of the previously described 110 kDa inner envelope protein ARTEMIS. However, ALB4 is expressed as a separate 55 kDa protein and is located in the thylakoid membrane of chloroplasts. Analysis of a T-DNA insertion line with a reduced level of Alb4 revealed chloroplasts with an altered ultrastructure. Mutant plastids are larger, more spherical in appearance and the grana stacks within the mutant lines are less appressed than in the wild-type chloroplasts. ALB4 is required for proper chloroplast biogenesis.  go_component chloroplast thylakoid membrane|GO:0009535|16595657|IDA  go_component membrane|GO:0016020||ISS  go_process signal transduction|GO:0007165||ISS  go_process chloroplast organization|GO:0009658|16595657|IMP  go_function molecular_function|GO:0003674||ND  product ALB4 (ALBINA 4)  note ALBINA 4 (ALB4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: signal transduction, chloroplast organization; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 60 kDa inner membrane insertion protein (InterPro:IPR001708); BEST Arabidopsis thaliana protein match is: ALB3 (ALBINO 3); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT2G28800.1); Has 5822 Blast hits to 5810 proteins in 1420 species: Archae - 0; Bacteria - 3056; Metazoa - 138; Fungi - 38; Plants - 87; Viruses - 0; Other Eukaryotes - 2503 (source: NCBI BLink).  protein_id AT1G24490.1p  transcript_id AT1G24490.1  protein_id AT1G24490.1p  transcript_id AT1G24490.1  
At1g24490	chr1:008682364	0.0	W/8682364-8682690,8682966-8683040,8683284-8683344,8683430-8683503,8683593-8683697,8683887-8683994,8684170-8684273,8684353-8684583,8684663-8684966	AT1G24490.2 CDS  gene_syn ALB4, ALBINA 4, F21J9.16  gene ALB4  function Homologue of the Alb3/Oxa1/YidC family. ALB4 is almost identical to the Alb3/Oxa1/YidC domain of the previously described 110 kDa inner envelope protein ARTEMIS. However, ALB4 is expressed as a separate 55 kDa protein and is located in the thylakoid membrane of chloroplasts. Analysis of a T-DNA insertion line with a reduced level of Alb4 revealed chloroplasts with an altered ultrastructure. Mutant plastids are larger, more spherical in appearance and the grana stacks within the mutant lines are less appressed than in the wild-type chloroplasts. ALB4 is required for proper chloroplast biogenesis.  go_component chloroplast thylakoid membrane|GO:0009535|16595657|IDA  go_component membrane|GO:0016020||ISS  go_process signal transduction|GO:0007165||ISS  go_process chloroplast organization|GO:0009658|16595657|IMP  go_function molecular_function|GO:0003674||ND  product ALB4 (ALBINA 4)  note ALBINA 4 (ALB4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: signal transduction, chloroplast organization; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 60 kDa inner membrane insertion protein (InterPro:IPR001708); BEST Arabidopsis thaliana protein match is: ALB3 (ALBINO 3); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT2G28800.1).  protein_id AT1G24490.2p  transcript_id AT1G24490.2  protein_id AT1G24490.2p  transcript_id AT1G24490.2  
At1g24510	chr1:008685504	0.0	C/8685504-8685674,8685757-8685870,8685974-8686140,8686314-8686416,8686509-8686561,8686643-8686775,8686919-8687267,8687371-8687660	AT1G24510.2 CDS  gene_syn F21J9.17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  product T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative  note T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G18190.1); Has 8554 Blast hits to 8515 proteins in 1645 species: Archae - 391; Bacteria - 3113; Metazoa - 1755; Fungi - 811; Plants - 329; Viruses - 0; Other Eukaryotes - 2155 (source: NCBI BLink).  protein_id AT1G24510.2p  transcript_id AT1G24510.2  protein_id AT1G24510.2p  transcript_id AT1G24510.2  
At1g24510	chr1:008685504	0.0	C/8685504-8685674,8685757-8685870,8685974-8686140,8686314-8686416,8686509-8686561,8686643-8686775,8686919-8687267,8687371-8687689,8687903-8688101	AT1G24510.1 CDS  gene_syn F21J9.17  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein folding|GO:0006457||IEA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function unfolded protein binding|GO:0051082||IEA  product T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative  note T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative; FUNCTIONS IN: unfolded protein binding, protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin Cpn60 (InterPro:IPR001844), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: chaperonin, putative (TAIR:AT3G18190.1); Has 13238 Blast hits to 13142 proteins in 2425 species: Archae - 394; Bacteria - 5650; Metazoa - 1832; Fungi - 993; Plants - 479; Viruses - 0; Other Eukaryotes - 3890 (source: NCBI BLink).  protein_id AT1G24510.1p  transcript_id AT1G24510.1  protein_id AT1G24510.1p  transcript_id AT1G24510.1  
At1g24520	chr1:008688699	0.0	W/8688699-8689058	AT1G24520.1 CDS  gene_syn BCP1, F21J9.18, F21J9_18  gene BCP1  function Male fertility gene acting on tapetum and microspore  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process pollen sperm cell differentiation|GO:0048235|7892232|IMP  go_function molecular_function|GO:0003674||ND  product BCP1  note BCP1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen sperm cell differentiation; LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; Has 45 Blast hits to 33 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 23; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G24520.1p  transcript_id AT1G24520.1  protein_id AT1G24520.1p  transcript_id AT1G24520.1  
At1g24530	chr1:008693287	0.0	W/8693287-8694543	AT1G24530.1 CDS  gene_syn F21J9.19  go_component plasma membrane|GO:0005886|17317660|IDA  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G24130.1); Has 34934 Blast hits to 16363 proteins in 585 species: Archae - 32; Bacteria - 4633; Metazoa - 14827; Fungi - 7171; Plants - 3064; Viruses - 0; Other Eukaryotes - 5207 (source: NCBI BLink).  protein_id AT1G24530.1p  transcript_id AT1G24530.1  protein_id AT1G24530.1p  transcript_id AT1G24530.1  
At1g24540	chr1:008699751	0.0	W/8699751-8701319	AT1G24540.1 CDS  gene_syn CYP86C1, F21J9.20  gene CYP86C1  function member of CYP86C  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP86C1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP86C1; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, petal, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP86C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT3G26125.1); Has 20814 Blast hits to 20754 proteins in 1084 species: Archae - 19; Bacteria - 1466; Metazoa - 9672; Fungi - 3993; Plants - 4880; Viruses - 3; Other Eukaryotes - 781 (source: NCBI BLink).  protein_id AT1G24540.1p  transcript_id AT1G24540.1  protein_id AT1G24540.1p  transcript_id AT1G24540.1  
At1g24560	chr1:008702644	0.0	W/8702644-8704023,8704106-8704182,8704601-8704712,8704841-8704957,8705290-8705640	AT1G24560.1 CDS  gene_syn F21J9.22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 56279 Blast hits to 28796 proteins in 1542 species: Archae - 818; Bacteria - 6598; Metazoa - 28656; Fungi - 4716; Plants - 2272; Viruses - 181; Other Eukaryotes - 13038 (source: NCBI BLink).  protein_id AT1G24560.1p  transcript_id AT1G24560.1  protein_id AT1G24560.1p  transcript_id AT1G24560.1  
At1g24570	chr1:008707197	0.0	W/8707197-8707216,8707293-8707410,8707491-8707587,8707689-8707768,8707853-8707936,8708014-8708132,8708203-8708304,8708367-8708480,8708556-8708612,8708702-8708768,8708857-8708910,8709014-8709091,8709168-8709203,8709372-8709491	AT1G24570.1 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67850.2); Has 194 Blast hits to 193 proteins in 16 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G24570.1p  transcript_id AT1G24570.1  protein_id AT1G24570.1p  transcript_id AT1G24570.1  
At1g24580	chr1:008710232	0.0	W/8710232-8710573	AT1G24580.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G67856.1); Has 3887 Blast hits to 3876 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 1193; Fungi - 276; Plants - 1834; Viruses - 15; Other Eukaryotes - 569 (source: NCBI BLink).  protein_id AT1G24580.1p  transcript_id AT1G24580.1  protein_id AT1G24580.1p  transcript_id AT1G24580.1  
At1g24575	chr1:008711211	0.0	C/8711211-8711477	AT1G24575.1 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24575.1p  transcript_id AT1G24575.1  protein_id AT1G24575.1p  transcript_id AT1G24575.1  
At1g24577	chr1:008712758	0.0	C/8712758-8712985	AT1G24577.1 CDS  product unknown protein  note unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.1); Has 60 Blast hits to 60 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24577.1p  transcript_id AT1G24577.1  protein_id AT1G24577.1p  transcript_id AT1G24577.1  
At1g24590	chr1:008714389	0.0	C/8714389-8715309	AT1G24590.1 CDS  gene_syn DORNROSCHEN-LIKE, DRN-LIKE, DRNL, ENHANCER OF SHOOT REGENERATION 2, ESR2, F21J9.25, FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, SOB2  gene DRNL  function Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. This gene functions in the regeneration of shoots in tissue culture, probably through transcriptional regulation of CUC1. May also be involved in activation of the cell cycle via CycD1;1.  go_component chloroplast|GO:0009507||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|17376809|IEP  go_process embryonic pattern specification|GO:0009880|17376809|IMP  go_process regulation of transcription|GO:0045449|17056621|IMP  go_process cotyledon development|GO:0048825|17376809|IMP  go_process regulation of cell cycle|GO:0051726|17056621|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product DRNL (DORNROSCHEN-LIKE); DNA binding / transcription factor  note DORNROSCHEN-LIKE (DRNL); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: leaf primordium, embryo, seed; EXPRESSED DURING: C globular stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ESR1 (ENHANCER OF SHOOT REGENERATION 1); DNA binding / protein binding / transcription factor (TAIR:AT1G12980.1); Has 3587 Blast hits to 3530 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3580; Viruses - 2; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G24590.1p  transcript_id AT1G24590.1  protein_id AT1G24590.1p  transcript_id AT1G24590.1  
At1g24600	chr1:008720375	0.0	W/8720375-8720593	AT1G24600.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67920.1); Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24600.1p  transcript_id AT1G24600.1  protein_id AT1G24600.1p  transcript_id AT1G24600.1  
At1g24610	chr1:008720906	0.0	C/8720906-8721280,8721373-8721636,8721719-8722188,8722390-8722711	AT1G24610.1 CDS  gene_syn F21J9.27  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SET domain-containing protein  note SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative (TAIR:AT1G14030.1); Has 709 Blast hits to 708 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 188; Plants - 185; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).  protein_id AT1G24610.1p  transcript_id AT1G24610.1  protein_id AT1G24610.1p  transcript_id AT1G24610.1  
At1g24620	chr1:008723893	0.0	C/8723893-8724453	AT1G24620.1 CDS  gene_syn F21J9.28  go_component nucleus|GO:0005634|14617066|IDA  go_function calcium ion binding|GO:0005509||IEA  go_process response to cold|GO:0009409|14617066|IEP  go_function calcium ion binding|GO:0005509||ISS  product polcalcin, putative / calcium-binding pollen allergen, putative  note polcalcin, putative / calcium-binding pollen allergen, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding protein, putative (TAIR:AT1G18210.2); Has 22102 Blast hits to 14581 proteins in 1314 species: Archae - 0; Bacteria - 148; Metazoa - 9310; Fungi - 5302; Plants - 3745; Viruses - 2; Other Eukaryotes - 3595 (source: NCBI BLink).  protein_id AT1G24620.1p  transcript_id AT1G24620.1  protein_id AT1G24620.1p  transcript_id AT1G24620.1  
At1g24625	chr1:008726009	0.0	C/8726009-8726638	AT1G24625.1 CDS  gene_syn F21J9.29, ZFP7, ZINC FINGER PROTEIN 7  gene ZFP7  function Encodes a zinc finger protein containing only a single zinc finger.  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding  note ZINC FINGER PROTEIN 7 (ZFP7); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZFP4 (ZINC FINGER PROTEIN 4); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G66140.1); Has 385 Blast hits to 383 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 382; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24625.1p  transcript_id AT1G24625.1  protein_id AT1G24625.1p  transcript_id AT1G24625.1  
At1g24640	chr1:008729280	0.0	W/8729280-8732681	AT1G24640.1 mRNA_TE_gene  pseudo  gene_syn F5A9.24  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 4.3e-37 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)  
At1g24650	chr1:008734570	0.0	W/8734570-8736742,8736828-8737315	AT1G24650.1 CDS  gene_syn F5A9.23  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  go_function protein binding|GO:0005515||ISS  product leucine-rich repeat family protein / protein kinase family protein  note leucine-rich repeat family protein / protein kinase family protein; FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein kinase, putative (TAIR:AT2G01820.1); Has 112935 Blast hits to 94481 proteins in 3424 species: Archae - 96; Bacteria - 9082; Metazoa - 41804; Fungi - 7349; Plants - 37395; Viruses - 383; Other Eukaryotes - 16826 (source: NCBI BLink).  protein_id AT1G24650.1p  transcript_id AT1G24650.1  protein_id AT1G24650.1p  transcript_id AT1G24650.1  
At1g24657	chr1:008737952	0.0	C/8737952-8738365	AT1G24657.1 pseudogenic_transcript  pseudo  function unknown pseudogene  
At1g24686	chr1:008740506	0.0	C/8740506-8740919	AT1G24686.1 pseudogenic_transcript  pseudo  function Pseudogene of AT1G09245  
At1g24706	chr1:008742210	0.0	W/8742210-8742344,8742441-8742566,8742677-8742718,8743209-8743268,8743835-8743897,8744104-8744184,8744538-8744609,8744677-8744724,8744831-8744899,8744987-8745120,8745782-8745857,8746171-8746364,8746779-8746859,8747014-8747218,8747297-8747524,8747607-8747687,8747777-8747896,8747985-8748044,8748521-8748648,8749298-8749394,8749471-8749599,8750010-8750113,8750417-8750597,8750728-8750894,8751082-8751688,8751792-8751896,8752096-8752255,8752379-8752455,8752526-8752918,8753379-8753586,8753670-8754475,8754716-8755026,8755177-8755243	AT1G24706.1 CDS  gene_syn F5A9.21, F5A9_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 25479 Blast hits to 15950 proteins in 654 species: Archae - 12; Bacteria - 897; Metazoa - 14432; Fungi - 3233; Plants - 1262; Viruses - 124; Other Eukaryotes - 5519 (source: NCBI BLink).  protein_id AT1G24706.1p  transcript_id AT1G24706.1  protein_id AT1G24706.1p  transcript_id AT1G24706.1  
At1g24733	chr1:008757069	0.0	W/8757069-8757362	AT1G24733.1 pseudogenic_transcript  pseudo  function pseudogene of CCoAMT (caffeoyl-CoA 3-O-methyltransferase)  
At1g24735	chr1:008757977	0.0	W/8757977-8758048,8758277-8758362,8758722-8758866,8758941-8759069,8759158-8759448	AT1G24735.1 CDS  gene_syn F5A9.20, F5A9_20  go_function O-methyltransferase activity|GO:0008171||IEA  go_component cytosol|GO:0005829|9484457|TAS  product O-methyltransferase  note O-methyltransferase; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: stem, leaf apex, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: CCoAMT; caffeoyl-CoA O-methyltransferase (TAIR:AT1G67980.1); Has 3167 Blast hits to 3164 proteins in 699 species: Archae - 19; Bacteria - 1309; Metazoa - 141; Fungi - 43; Plants - 443; Viruses - 0; Other Eukaryotes - 1212 (source: NCBI BLink).  protein_id AT1G24735.1p  transcript_id AT1G24735.1  protein_id AT1G24735.1p  transcript_id AT1G24735.1  
At1g24764	chr1:008760001	0.0	C/8760001-8760043,8760161-8760348,8760459-8760998,8761087-8761158,8761273-8761419,8761508-8761663,8761748-8761918,8762017-8762187,8762275-8762340,8762832-8762917,8762992-8763256	AT1G24764.1 CDS  gene_syn ATMAP70-2, F5A9.19, F5A9_19, microtubule-associated proteins 70-2  gene ATMAP70-2  function Member of the MAP70 protein family.  go_component microtubule|GO:0005874|15860013|ISS  go_process cytoskeleton organization|GO:0007010|15860013|TAS  go_function microtubule binding|GO:0008017|15860013|ISS  product ATMAP70-2 (microtubule-associated proteins 70-2); microtubule binding  note microtubule-associated proteins 70-2 (ATMAP70-2); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: ATMAP70-1 (microtubule-associated proteins 70-1); microtubule binding (TAIR:AT1G68060.1); Has 37024 Blast hits to 22019 proteins in 1366 species: Archae - 430; Bacteria - 3816; Metazoa - 20244; Fungi - 2827; Plants - 1490; Viruses - 103; Other Eukaryotes - 8114 (source: NCBI BLink).  protein_id AT1G24764.1p  transcript_id AT1G24764.1  protein_id AT1G24764.1p  transcript_id AT1G24764.1  
At1g24792	chr1:008766060	0.0	W/8766060-8767096	AT1G24792.1 pseudogenic_transcript  pseudo  function pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related  
At1g24793	chr1:008767581	0.0	W/8767581-8767682,8767784-8768092,8768280-8768486,8768576-8768677,8768772-8768832,8768903-8768922	AT1G24793.2 CDS  gene_syn F5A9.18  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25210.2).  protein_id AT1G24793.2p  transcript_id AT1G24793.2  protein_id AT1G24793.2p  transcript_id AT1G24793.2  
At1g24793	chr1:008767581	0.0	W/8767581-8767682,8767784-8768092,8768280-8768486,8768576-8768677,8768772-8768836,8768903-8769047,8769157-8769207	AT1G24793.1 CDS  gene_syn F5A9.18  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25210.1); Has 4068 Blast hits to 4068 proteins in 841 species: Archae - 0; Bacteria - 1767; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).  protein_id AT1G24793.1p  transcript_id AT1G24793.1  protein_id AT1G24793.1p  transcript_id AT1G24793.1  
At1g24800	chr1:008769741	0.0	W/8769741-8771042	AT1G24800.1 CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G24800.1p  transcript_id AT1G24800.1  protein_id AT1G24800.1p  transcript_id AT1G24800.1  
At1g24807	chr1:008771766	0.0	C/8771766-8771870,8771958-8772093,8772189-8772288,8772404-8772514,8772593-8772630,8772719-8772828,8773428-8773535	AT1G24807.1 CDS  gene_syn F5A9.17, F5A9_17  go_component chloroplast|GO:0009507|18431481|IDA  go_process glutamine metabolic process|GO:0006541||IEA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function anthranilate synthase activity|GO:0004049||IEA  product anthranilate synthase beta subunit, putative  note anthranilate synthase beta subunit, putative; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit, putative (TAIR:AT1G25155.1); Has 15273 Blast hits to 15273 proteins in 1883 species: Archae - 373; Bacteria - 7950; Metazoa - 353; Fungi - 454; Plants - 107; Viruses - 0; Other Eukaryotes - 6036 (source: NCBI BLink).  protein_id AT1G24807.1p  transcript_id AT1G24807.1  protein_id AT1G24807.1p  transcript_id AT1G24807.1  
At1g24822	chr1:008774997	0.0	C/8774997-8775080,8775130-8775293,8777039-8777371,8777813-8777882	AT1G24822.1 CDS  gene_syn F5A9.16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25097.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24822.1p  transcript_id AT1G24822.1  protein_id AT1G24822.1p  transcript_id AT1G24822.1  
At1g24825	chr1:008775901	0.0	W/8775901-8778045	AT1G24825.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G24822  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24825.1  
At1g24825	chr1:008775929	0.0	W/8775929-8777418	AT1G24825.4 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G24822  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24825.4  
At1g24825	chr1:008775936	0.0	W/8775936-8778000	AT1G24825.2 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G24822  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24825.2  
At1g24825	chr1:008775950	0.0	W/8775950-8777439	AT1G24825.3 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G24822  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G24825.3  
At1g24851	chr1:008778280	0.0	W/8778280-8779056	AT1G24851.1 CDS  gene_syn F5A9.15, F5A9_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25180.1); Has 6776 Blast hits to 1945 proteins in 246 species: Archae - 0; Bacteria - 273; Metazoa - 1475; Fungi - 655; Plants - 232; Viruses - 52; Other Eukaryotes - 4089 (source: NCBI BLink).  protein_id AT1G24851.1p  transcript_id AT1G24851.1  protein_id AT1G24851.1p  transcript_id AT1G24851.1  
At1g24879	chr1:008780844	0.0	W/8780844-8781536	AT1G24879.1 pseudogenic_transcript  pseudo  function pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related  
At1g24880	chr1:008781961	0.0	W/8781961-8782062,8782164-8782472,8782660-8782865,8782955-8783056,8783151-8783215,8783282-8783426,8783536-8783586	AT1G24880.1 CDS  gene_syn F5A9.14, F5A9_14  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25210.1); Has 3510 Blast hits to 3510 proteins in 829 species: Archae - 0; Bacteria - 1740; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 1735 (source: NCBI BLink).  protein_id AT1G24880.1p  transcript_id AT1G24880.1  protein_id AT1G24880.1p  transcript_id AT1G24880.1  
At1g24881	chr1:008784120	0.0	W/8784120-8785421	AT1G24881.1 CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G24881.1p  transcript_id AT1G24881.1  protein_id AT1G24881.1p  transcript_id AT1G24881.1  
At1g24909	chr1:008786145	0.0	C/8786145-8786249,8786337-8786472,8786568-8786667,8786783-8786893,8786972-8787009,8787098-8787168,8787807-8787914	AT1G24909.1 CDS  gene_syn F5A9.13  go_process glutamine metabolic process|GO:0006541||IEA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function anthranilate synthase activity|GO:0004049||IEA  product anthranilate synthase beta subunit, putative  note anthranilate synthase beta subunit, putative; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit, putative (TAIR:AT1G25155.1); Has 15672 Blast hits to 15672 proteins in 1899 species: Archae - 375; Bacteria - 8128; Metazoa - 354; Fungi - 458; Plants - 107; Viruses - 0; Other Eukaryotes - 6250 (source: NCBI BLink).  protein_id AT1G24909.1p  transcript_id AT1G24909.1  protein_id AT1G24909.1p  transcript_id AT1G24909.1  
At1g24938	chr1:008789376	0.0	C/8789376-8792080	AT1G24938.1 mRNA_TE_gene  pseudo  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1)  
At1g24967	chr1:008793821	0.0	C/8793821-8797942	AT1G24967.1 mRNA_TE_gene  pseudo  gene_syn F5A9.11, F5A9_11  note Transposable element gene, Mutator-like transposase family, has a 1.2e-61 P-value blast match to Q9S9L6 /322-461 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g25054	chr1:008798556	0.0	W/8798556-8798584,8798672-8798706,8798814-8798867,8804478-8804590,8804692-8805000,8805188-8805394,8805484-8805585,8805680-8805744,8805811-8805955,8806065-8806115	AT1G25054.1 CDS  gene_syn F5A9.8, F5A9_8  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  go_process lipid A biosynthetic process|GO:0009245||ISS  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25210.1); Has 4068 Blast hits to 4068 proteins in 841 species: Archae - 0; Bacteria - 1767; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).  protein_id AT1G25054.1p  transcript_id AT1G25054.1  protein_id AT1G25054.1p  transcript_id AT1G25054.1  
At1g24996	chr1:008799520	0.0	C/8799520-8799899,8800341-8800410	AT1G24996.1 CDS  gene_syn F5A9.10, F5A9_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25097.1); Has 11 Blast hits to 11 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G24996.1p  transcript_id AT1G24996.1  protein_id AT1G24996.1p  transcript_id AT1G24996.1  
At1g25025	chr1:008800808	0.0	W/8800808-8801584	AT1G25025.1 CDS  gene_syn F5A9.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25180.1); Has 8089 Blast hits to 2360 proteins in 296 species: Archae - 0; Bacteria - 402; Metazoa - 1872; Fungi - 825; Plants - 256; Viruses - 82; Other Eukaryotes - 4652 (source: NCBI BLink).  protein_id AT1G25025.1p  transcript_id AT1G25025.1  protein_id AT1G25025.1p  transcript_id AT1G25025.1  
At1g25053	chr1:008803300	0.0	W/8803300-8804091	AT1G25053.1 pseudogenic_transcript  pseudo  function pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related  
At1g25054	chr1:008804489	0.0	W/8804489-8804590,8804692-8805000,8805188-8805394,8805484-8805585,8805680-8805744,8805811-8805955,8806065-8806115	AT1G25054.2 CDS  gene_syn F5A9.8, F5A9_8  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  go_process lipid A biosynthetic process|GO:0009245||ISS  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25210.1); Has 3771 Blast hits to 3771 proteins in 830 species: Archae - 0; Bacteria - 1746; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1992 (source: NCBI BLink).  protein_id AT1G25054.2p  transcript_id AT1G25054.2  protein_id AT1G25054.2p  transcript_id AT1G25054.2  
At1g25055	chr1:008806649	0.0	W/8806649-8807950	AT1G25055.1 CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G25055.1p  transcript_id AT1G25055.1  protein_id AT1G25055.1p  transcript_id AT1G25055.1  
At1g25083	chr1:008808674	0.0	C/8808674-8808778,8808866-8809001,8809097-8809196,8809312-8809422,8809501-8809538,8809627-8809697,8810336-8810443	AT1G25083.1 CDS  gene_syn F5A9.7  go_process glutamine metabolic process|GO:0006541||IEA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function anthranilate synthase activity|GO:0004049||IEA  product anthranilate synthase beta subunit, putative  note anthranilate synthase beta subunit, putative; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit, putative (TAIR:AT1G25155.1); Has 15672 Blast hits to 15672 proteins in 1899 species: Archae - 375; Bacteria - 8128; Metazoa - 354; Fungi - 458; Plants - 107; Viruses - 0; Other Eukaryotes - 6250 (source: NCBI BLink).  protein_id AT1G25083.1p  transcript_id AT1G25083.1  protein_id AT1G25083.1p  transcript_id AT1G25083.1  
At1g25097	chr1:008811905	0.0	C/8811905-8811988,8812038-8812201,8813945-8814277,8814719-8814788	AT1G25097.1 CDS  gene_syn F5A9.6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24822.1); Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25097.1p  transcript_id AT1G25097.1  protein_id AT1G25097.1p  transcript_id AT1G25097.1  
At1g25098	chr1:008812811	0.0	W/8812811-8814450	AT1G25098.2 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G25097  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G25098.2  
At1g25098	chr1:008812822	0.0	W/8812822-8814342	AT1G25098.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G25097  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G25098.1  
At1g25112	chr1:008815186	0.0	W/8815186-8815962	AT1G25112.1 CDS  gene_syn F5A9.5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25180.1); Has 8089 Blast hits to 2360 proteins in 296 species: Archae - 0; Bacteria - 402; Metazoa - 1872; Fungi - 825; Plants - 256; Viruses - 82; Other Eukaryotes - 4652 (source: NCBI BLink).  protein_id AT1G25112.1p  transcript_id AT1G25112.1  protein_id AT1G25112.1p  transcript_id AT1G25112.1  
At1g25141	chr1:008817678	0.0	W/8817678-8818316,8818406-8818469,8818856-8818968,8819070-8819378,8819566-8819772,8819862-8819963,8820058-8820122,8820189-8820221,8821026-8821222,8821280-8822328	AT1G25141.1 CDS  gene_syn F5A9.4  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  product UDP-3-0-acyl N-acetylglucosamine deacetylase family protein / F-box protein-related  note UDP-3-0-acyl N-acetylglucosamine deacetylase family protein / F-box protein-related; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 5034 Blast hits to 4600 proteins in 857 species: Archae - 0; Bacteria - 1746; Metazoa - 0; Fungi - 0; Plants - 1275; Viruses - 0; Other Eukaryotes - 2013 (source: NCBI BLink).  protein_id AT1G25141.1p  transcript_id AT1G25141.1  protein_id AT1G25141.1p  transcript_id AT1G25141.1  
At1g25155	chr1:008823052	0.0	C/8823052-8823156,8823244-8823379,8823475-8823574,8823690-8823800,8823879-8823916,8824005-8824075,8824714-8824821	AT1G25155.1 CDS  gene_syn F5A9.3  go_process glutamine metabolic process|GO:0006541||IEA  go_process metabolic process|GO:0008152||IEA  go_process biosynthetic process|GO:0009058||IEA  go_function catalytic activity|GO:0003824||IEA  go_function anthranilate synthase activity|GO:0004049||IEA  product anthranilate synthase beta subunit, putative  note anthranilate synthase beta subunit, putative; FUNCTIONS IN: catalytic activity, anthranilate synthase activity; INVOLVED IN: glutamine metabolic process, biosynthetic process, metabolic process; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit, putative (TAIR:AT1G25083.1); Has 15672 Blast hits to 15672 proteins in 1899 species: Archae - 375; Bacteria - 8128; Metazoa - 354; Fungi - 458; Plants - 107; Viruses - 0; Other Eukaryotes - 6250 (source: NCBI BLink).  protein_id AT1G25155.1p  transcript_id AT1G25155.1  protein_id AT1G25155.1p  transcript_id AT1G25155.1  
At1g25175	chr1:008827286	0.0	W/8827286-8829320	AT1G25175.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G25175.1  
At1g25180	chr1:008829564	0.0	W/8829564-8830340	AT1G25180.1 CDS  gene_syn F5A9.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25112.1); Has 8089 Blast hits to 2360 proteins in 296 species: Archae - 0; Bacteria - 402; Metazoa - 1872; Fungi - 825; Plants - 256; Viruses - 82; Other Eukaryotes - 4652 (source: NCBI BLink).  protein_id AT1G25180.1p  transcript_id AT1G25180.1  protein_id AT1G25180.1p  transcript_id AT1G25180.1  
At1g25209	chr1:008831724	0.0	W/8831724-8832760	AT1G25209.1 pseudogenic_transcript  pseudo  function pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related  
At1g25210	chr1:008833245	0.0	W/8833245-8833346,8833448-8833756,8833944-8834150,8834240-8834341,8834436-8834496,8834567-8834586	AT1G25210.2 CDS  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  go_process lipid A biosynthetic process|GO:0009245||ISS  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G24793.2); Has 3771 Blast hits to 3771 proteins in 830 species: Archae - 0; Bacteria - 1746; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1992 (source: NCBI BLink).  protein_id AT1G25210.2p  transcript_id AT1G25210.2  protein_id AT1G25210.2p  transcript_id AT1G25210.2  
At1g25210	chr1:008833245	0.0	W/8833245-8833346,8833448-8833756,8833944-8834150,8834240-8834341,8834436-8834500,8834567-8834711,8834821-8834871	AT1G25210.1 CDS  go_process lipid A biosynthetic process|GO:0009245||IEA  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||IEA  go_process lipid A biosynthetic process|GO:0009245||ISS  go_function UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity|GO:0008759||ISS  product UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  note UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (TAIR:AT1G25054.2); Has 4068 Blast hits to 4068 proteins in 841 species: Archae - 0; Bacteria - 1767; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2268 (source: NCBI BLink).  protein_id AT1G25210.1p  transcript_id AT1G25210.1  protein_id AT1G25210.1p  transcript_id AT1G25210.1  
At1g25211	chr1:008835405	0.0	W/8835405-8836706	AT1G25211.1 CDS  product unknown protein  note CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25055.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G25211.1p  transcript_id AT1G25211.1  protein_id AT1G25211.1p  transcript_id AT1G25211.1  
At1g25220	chr1:008837430	0.0	C/8837430-8837534,8837622-8837757,8837847-8837946,8838062-8838172,8838269-8838306,8838395-8838465,8839116-8839279,8839373-8839478	AT1G25220.1 CDS  gene_syn ANTHRANILATE SYNTHASE BETA SUBUNIT, ANTHRANILATE SYNTHASE BETA SUBUNIT 1, ASB1, F4F7.39, F4F7_39, TRP4, TRYPTOPHAN BIOSYNTHESIS 4, WEAK ETHYLENE INSENSITIVE7, WEI7  gene ASB1  function Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2).  go_component chloroplast|GO:0009507||IEA  go_process response to salt stress|GO:0009651|17916636|IEP  go_process tryptophan biosynthetic process|GO:0000162|8400875|TAS  go_process response to bacterium|GO:0009617|8400875|IEP  go_process response to ethylene stimulus|GO:0009723|15980261|IGI  go_process auxin biosynthetic process|GO:0009851|15980261|IGI  go_process lateral root primordium development|GO:0010386|18435826|IMP  go_function anthranilate synthase activity|GO:0004049|8400875|IGI  product ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1); anthranilate synthase  note ANTHRANILATE SYNTHASE BETA SUBUNIT 1 (ASB1); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: pericycle, cotyledon vascular system, primary root tip, root, lateral root primordium; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase of anthranilate synthase (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase region (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit, putative (TAIR:AT5G57890.1); Has 15863 Blast hits to 15863 proteins in 1908 species: Archae - 378; Bacteria - 8202; Metazoa - 372; Fungi - 465; Plants - 108; Viruses - 0; Other Eukaryotes - 6338 (source: NCBI BLink).  protein_id AT1G25220.1p  transcript_id AT1G25220.1  protein_id AT1G25220.1p  transcript_id AT1G25220.1  
At1g25230	chr1:008840474	0.0	C/8840474-8840699,8840809-8840876,8841188-8841316,8841410-8841537,8841666-8841773,8841870-8842026,8842095-8842298	AT1G25230.1 CDS  gene_syn F4F7.38, F4F7_38  go_component endomembrane system|GO:0012505||IEA  go_function hydrolase activity|GO:0016787||IEA  go_process biological_process|GO:0008150||ND  go_function protein serine/threonine phosphatase activity|GO:0004722||ISS  product purple acid phosphatase family protein  note purple acid phosphatase family protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: PAP3 (PURPLE ACID PHOSPHATASE 3); acid phosphatase/ protein serine/threonine phosphatase (TAIR:AT1G14700.1); Has 873 Blast hits to 869 proteins in 210 species: Archae - 0; Bacteria - 175; Metazoa - 324; Fungi - 6; Plants - 91; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).  protein_id AT1G25230.1p  transcript_id AT1G25230.1  protein_id AT1G25230.1p  transcript_id AT1G25230.1  
At1g25240	chr1:008845231	0.0	W/8845231-8846361	AT1G25240.1 CDS  gene_syn F4F7.37, F4F7_37  go_component mitochondrion|GO:0005739||IEA  go_component clathrin coat|GO:0030118||IEA  go_process clathrin coat assembly|GO:0048268||IEA  go_function phospholipid binding|GO:0005543||IEA  go_function phosphatidylinositol binding|GO:0005545||IEA  go_function clathrin binding|GO:0030276||IEA  go_function binding|GO:0005488||ISS  product epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related  note epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat, mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (TAIR:AT1G68110.1); Has 280 Blast hits to 257 proteins in 39 species: Archae - 1; Bacteria - 2; Metazoa - 79; Fungi - 4; Plants - 193; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G25240.1p  transcript_id AT1G25240.1  protein_id AT1G25240.1p  transcript_id AT1G25240.1  
At1g25250	chr1:008849549	0.0	W/8849549-8849599,8849838-8850250,8850896-8851520	AT1G25250.1 CDS  gene_syn Arabidopsis thaliana Indeterminate(ID)-Domain 16, AtIDD16, F4F7.36, F4F7_36  gene AtIDD16  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16); nucleic acid binding / transcription factor/ zinc ion binding  note Arabidopsis thaliana Indeterminate(ID)-Domain 16 (AtIDD16); FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: AtIDD14 (Arabidopsis thaliana Indeterminate(ID)-Domain 14); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT1G68130.1); Has 27940 Blast hits to 13404 proteins in 248 species: Archae - 1; Bacteria - 28; Metazoa - 26584; Fungi - 117; Plants - 396; Viruses - 9; Other Eukaryotes - 805 (source: NCBI BLink).  protein_id AT1G25250.1p  transcript_id AT1G25250.1  protein_id AT1G25250.1p  transcript_id AT1G25250.1  
At1g25260	chr1:008854163	0.0	C/8854163-8854297,8854379-8854455,8854556-8854646,8854804-8854864,8855000-8855058,8855152-8855242,8855321-8855486,8855739-8855766	AT1G25260.1 CDS  gene_syn F4F7.35, F4F7_35  go_process ribosome biogenesis|GO:0042254||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic ribosome|GO:0022626|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product acidic ribosomal protein P0-related  note acidic ribosomal protein P0-related; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein P0 (RPP0C) (TAIR:AT3G11250.1); Has 809 Blast hits to 807 proteins in 249 species: Archae - 78; Bacteria - 0; Metazoa - 294; Fungi - 172; Plants - 102; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).  protein_id AT1G25260.1p  transcript_id AT1G25260.1  protein_id AT1G25260.1p  transcript_id AT1G25260.1  
At1g25270	chr1:008857726	0.0	W/8857726-8857889,8858083-8858145,8858378-8858494,8858938-8859184,8859278-8859436,8859505-8859656,8859744-8859909	AT1G25270.1 CDS  gene_syn F4F7.34, F4F7_34  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  product unknown protein  note LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 family protein (TAIR:AT1G68170.1); Has 1288 Blast hits to 1274 proteins in 251 species: Archae - 4; Bacteria - 491; Metazoa - 4; Fungi - 8; Plants - 639; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).  protein_id AT1G25270.1p  transcript_id AT1G25270.1  protein_id AT1G25270.1p  transcript_id AT1G25270.1  
At1g25275	chr1:008860719	0.0	W/8860719-8860860,8860949-8860999,8861125-8861156	AT1G25275.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25275.1p  transcript_id AT1G25275.1  protein_id AT1G25275.1p  transcript_id AT1G25275.1  
At1g25275	chr1:008860719	0.0	W/8860719-8860860,8860949-8861032,8861125-8861156	AT1G25275.3 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25275.3p  transcript_id AT1G25275.3  protein_id AT1G25275.3p  transcript_id AT1G25275.3  
At1g25275	chr1:008860719	0.0	W/8860719-8860864,8860953-8860999,8861125-8861156	AT1G25275.2 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25275.2p  transcript_id AT1G25275.2  protein_id AT1G25275.2p  transcript_id AT1G25275.2  
At1g25280	chr1:008864961	0.0	W/8864961-8865326,8865425-8865512,8865596-8865728,8865858-8866608	AT1G25280.1 CDS  gene_syn AtTLP10, F4F7.33, F4F7_33, TUBBY LIKE PROTEIN 10  gene AtTLP10  function Member of TLP family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 10 (AtTLP10); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G76900.2); Has 685 Blast hits to 671 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 2; Plants - 313; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G25280.1p  transcript_id AT1G25280.1  protein_id AT1G25280.1p  transcript_id AT1G25280.1  
At1g25280	chr1:008865676	0.0	W/8865676-8865728,8865858-8866608	AT1G25280.2 CDS  gene_syn AtTLP10, F4F7.33, F4F7_33, TUBBY LIKE PROTEIN 10  gene AtTLP10  function Member of TLP family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 10 (AtTLP10); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G76900.2); Has 670 Blast hits to 659 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 291; Fungi - 2; Plants - 302; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G25280.2p  transcript_id AT1G25280.2  protein_id AT1G25280.2p  transcript_id AT1G25280.2  
At1g25280	chr1:008865676	0.0	W/8865676-8865728,8865858-8866608	AT1G25280.3 CDS  gene_syn AtTLP10, F4F7.33, F4F7_33, TUBBY LIKE PROTEIN 10  gene AtTLP10  function Member of TLP family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function phosphoric diester hydrolase activity|GO:0008081||ISS  product AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor  note TUBBY LIKE PROTEIN 10 (AtTLP10); FUNCTIONS IN: transcription factor activity, phosphoric diester hydrolase activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (TAIR:AT1G76900.2); Has 670 Blast hits to 659 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 291; Fungi - 2; Plants - 302; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).  protein_id AT1G25280.3p  transcript_id AT1G25280.3  protein_id AT1G25280.3p  transcript_id AT1G25280.3  
At1g25290	chr1:008867157	0.0	W/8867157-8867309,8867436-8867698,8867851-8867905,8867977-8868057,8868139-8868235,8868309-8868397,8868494-8868592,8868661-8868702,8868793-8868945	AT1G25290.1 CDS  gene_syn ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10, ATRBL10, F4F7.32, F4F7_32  gene ATRBL10  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ATRBL10 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10)  note ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10 (ATRBL10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5) (TAIR:AT1G52580.1); Has 3072 Blast hits to 3072 proteins in 967 species: Archae - 65; Bacteria - 1888; Metazoa - 196; Fungi - 96; Plants - 174; Viruses - 0; Other Eukaryotes - 653 (source: NCBI BLink).  protein_id AT1G25290.1p  transcript_id AT1G25290.1  protein_id AT1G25290.1p  transcript_id AT1G25290.1  
At1g25300	chr1:008871568	0.0	W/8871568-8872386	AT1G25300.1 CDS  gene_syn F4F7.31, F4F7_31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product octicosapeptide/Phox/Bem1p (PB1) domain-containing protein  note octicosapeptide/Phox/Bem1p (PB1) domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (TAIR:AT3G18230.1); Has 175 Blast hits to 175 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25300.1p  transcript_id AT1G25300.1  protein_id AT1G25300.1p  transcript_id AT1G25300.1  
At1g25310	chr1:008874124	0.0	C/8874124-8874207,8874305-8874364,8874454-8874519,8874607-8874834	AT1G25310.1 CDS  gene_syn F4F7.30, F4F7_30, MEE8, maternal effect embryo arrest 8  gene MEE8  go_component nucleus|GO:0005634||IEA  go_process embryonic development ending in seed dormancy|GO:0009793|15634699|IMP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product MEE8 (maternal effect embryo arrest 8); DNA binding / transcription factor  note maternal effect embryo arrest 8 (MEE8); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092); Has 68 Blast hits to 68 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25310.1p  transcript_id AT1G25310.1  protein_id AT1G25310.1p  transcript_id AT1G25310.1  
At1g25320	chr1:008877988	0.0	W/8877988-8879461,8879546-8880180	AT1G25320.1 CDS  gene_syn F4F7.29, F4F7_29  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT2G01210.1); Has 95576 Blast hits to 66410 proteins in 1901 species: Archae - 63; Bacteria - 6325; Metazoa - 32525; Fungi - 3938; Plants - 41244; Viruses - 206; Other Eukaryotes - 11275 (source: NCBI BLink).  protein_id AT1G25320.1p  transcript_id AT1G25320.1  protein_id AT1G25320.1p  transcript_id AT1G25320.1  
At1g25330	chr1:008880515	0.0	C/8880515-8880610,8880697-8880777,8880885-8880953,8881423-8881488,8881575-8881744,8881829-8882018	AT1G25330.1 CDS  gene_syn F4F7.28, F4F7_28  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BEE1 (BR Enhanced Expression 1); transcription factor (TAIR:AT1G18400.1); Has 1096 Blast hits to 1096 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 28; Plants - 1031; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25330.1p  transcript_id AT1G25330.1  protein_id AT1G25330.1p  transcript_id AT1G25330.1  
At1g25340	chr1:008885210	0.0	W/8885210-8885360,8885491-8885620,8885701-8886271	AT1G25340.1 CDS  gene_syn AtMYB116, F4F7.27, F4F7_27, MYB116, myb domain protein 116  gene MYB116  function putative transcription factor (MYB116)  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB116 (myb domain protein 116); DNA binding / transcription factor  note myb domain protein 116 (MYB116); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, sepal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB62 (myb domain protein 62); DNA binding / transcription factor (TAIR:AT1G68320.1); Has 6214 Blast hits to 5713 proteins in 346 species: Archae - 0; Bacteria - 0; Metazoa - 674; Fungi - 242; Plants - 3716; Viruses - 6; Other Eukaryotes - 1576 (source: NCBI BLink).  protein_id AT1G25340.1p  transcript_id AT1G25340.1  protein_id AT1G25340.1p  transcript_id AT1G25340.1  
At1g25340	chr1:008885210	0.0	W/8885210-8885360,8885506-8885620,8885701-8886271	AT1G25340.2 CDS  gene_syn AtMYB116, F4F7.27, F4F7_27, MYB116, myb domain protein 116  gene MYB116  function putative transcription factor (MYB116)  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product MYB116 (myb domain protein 116); DNA binding / transcription factor  note myb domain protein 116 (MYB116); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, sepal; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB62 (myb domain protein 62); DNA binding / transcription factor (TAIR:AT1G68320.1); Has 6043 Blast hits to 5658 proteins in 349 species: Archae - 0; Bacteria - 0; Metazoa - 618; Fungi - 261; Plants - 3638; Viruses - 6; Other Eukaryotes - 1520 (source: NCBI BLink).  protein_id AT1G25340.2p  transcript_id AT1G25340.2  protein_id AT1G25340.2p  transcript_id AT1G25340.2  
At1g25350	chr1:008889280	0.0	C/8889280-8889374,8889466-8889598,8889684-8889773,8889850-8889955,8890047-8890147,8890223-8890418,8890510-8890646,8890741-8890872,8891052-8891150,8891240-8891437,8891589-8891675,8891761-8891851,8891967-8892022,8892124-8892276,8892534-8892626,8892709-8892816,8892906-8892967,8893108-8893203,8893375-8893474,8893581-8893652,8893743-8893793,8894074-8894205	AT1G25350.1 CDS  gene_syn F4F7.26, F4F7_26, OVA9, ovule abortion 9  gene OVA9  go_component cytosol|GO:0005829|16297076|ISS  go_process translation|GO:0006412|9746349|TAS  go_process glutamyl-tRNA aminoacylation|GO:0006424|16297076|ISS  go_process ovule development|GO:0048481|16297076|IMP  go_function glutamine-tRNA ligase activity|GO:0004819|16297076|ISS  product OVA9 (ovule abortion 9); glutamine-tRNA ligase  note ovule abortion 9 (OVA9); FUNCTIONS IN: glutamine-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, ovule development; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1 (InterPro:IPR007639), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 2 (InterPro:IPR007638), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (E and Q) family protein (TAIR:AT5G19720.1); Has 8783 Blast hits to 8778 proteins in 1656 species: Archae - 170; Bacteria - 4659; Metazoa - 349; Fungi - 257; Plants - 97; Viruses - 0; Other Eukaryotes - 3251 (source: NCBI BLink).  protein_id AT1G25350.1p  transcript_id AT1G25350.1  protein_id AT1G25350.1p  transcript_id AT1G25350.1  
At1g25360	chr1:008894428	0.0	W/8894428-8896800	AT1G25360.1 CDS  gene_syn F4F7.25, F4F7_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 17435 Blast hits to 5337 proteins in 179 species: Archae - 2; Bacteria - 0; Metazoa - 141; Fungi - 56; Plants - 16932; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).  protein_id AT1G25360.1p  transcript_id AT1G25360.1  protein_id AT1G25360.1p  transcript_id AT1G25360.1  
At1g25370	chr1:008898046	0.0	C/8898046-8898108,8898206-8898934	AT1G25370.1 CDS  gene_syn F4F7.1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68340.1); Has 144 Blast hits to 144 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25370.1p  transcript_id AT1G25370.1  protein_id AT1G25370.1p  transcript_id AT1G25370.1  
At1g25375	chr1:008900279	0.0	C/8900279-8900467,8900611-8900785,8900947-8901056,8901243-8901288,8901390-8901463,8901562-8901647,8901719-8901790,8901919-8901994,8902138-8902320,8902447-8902601,8902740-8902887,8902960-8903220	AT1G25375.1 CDS  go_function hydrolase activity|GO:0016787||IEA  go_component cellular_component|GO:0005575||ND  go_process metabolic process|GO:0008152||ISS  go_function catalytic activity|GO:0003824||ISS  product metallo-beta-lactamase family protein  note metallo-beta-lactamase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); Has 3890 Blast hits to 3889 proteins in 863 species: Archae - 83; Bacteria - 2082; Metazoa - 121; Fungi - 86; Plants - 75; Viruses - 0; Other Eukaryotes - 1443 (source: NCBI BLink).  protein_id AT1G25375.1p  transcript_id AT1G25375.1  protein_id AT1G25375.1p  transcript_id AT1G25375.1  
At1g25380	chr1:008903726	0.0	W/8903726-8903807,8903899-8903994,8904199-8904305,8904495-8904543,8904672-8904775,8904873-8904967,8905085-8905173,8905262-8905356,8905444-8905818	AT1G25380.1 CDS  gene_syn F4F7.45  go_component mitochondrial inner membrane|GO:0005743||IEA  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_function binding|GO:0005488||IEA  go_component mitochondrial inner membrane|GO:0005743||ISS  go_process transport|GO:0006810||ISS  go_process mitochondrial transport|GO:0006839||ISS  go_function binding|GO:0005488||ISS  product mitochondrial substrate carrier family protein  note mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: mitochondrial substrate carrier family protein (TAIR:AT2G47490.1); Has 21875 Blast hits to 10577 proteins in 366 species: Archae - 0; Bacteria - 0; Metazoa - 10770; Fungi - 5942; Plants - 2991; Viruses - 5; Other Eukaryotes - 2167 (source: NCBI BLink).  protein_id AT1G25380.1p  transcript_id AT1G25380.1  protein_id AT1G25380.1p  transcript_id AT1G25380.1  
At1g25390	chr1:008906640	0.0	C/8906640-8907607,8907690-8907929,8908022-8908060,8908158-8908800	AT1G25390.1 CDS  gene_syn F2J7.14, F2J7_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase family protein (TAIR:AT1G66880.1); Has 90575 Blast hits to 89358 proteins in 3412 species: Archae - 59; Bacteria - 7976; Metazoa - 39750; Fungi - 7235; Plants - 19369; Viruses - 561; Other Eukaryotes - 15625 (source: NCBI BLink).  protein_id AT1G25390.1p  transcript_id AT1G25390.1  protein_id AT1G25390.1p  transcript_id AT1G25390.1  
At1g25400	chr1:008911463	0.0	C/8911463-8912329	AT1G25400.1 CDS  gene_syn F2J7.13, F2J7_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68440.1); Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25400.1p  transcript_id AT1G25400.1  protein_id AT1G25400.1p  transcript_id AT1G25400.1  
At1g25410	chr1:008914191	0.0	C/8914191-8915219	AT1G25410.1 CDS  gene_syn ATIPT6, F2J7.12, F2J7_12  gene ATIPT6  function AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds  go_function tRNA isopentenyltransferase activity|GO:0004811||IEA  go_function ATP binding|GO:0005524||IEA  go_process cytokinin biosynthetic process|GO:0009691|17062755|IGI  go_function adenylate dimethylallyltransferase activity|GO:0009824||ISS  product ATIPT6; ATP binding / adenylate dimethylallyltransferase/ tRNA isopentenyltransferase  note ATIPT6; FUNCTIONS IN: adenylate dimethylallyltransferase activity, tRNA isopentenyltransferase activity, ATP binding; INVOLVED IN: cytokinin biosynthetic process; CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: ATIPT1 (isopentenyltransferase 1); adenylate dimethylallyltransferase (TAIR:AT1G68460.1); Has 4582 Blast hits to 4539 proteins in 1376 species: Archae - 0; Bacteria - 2490; Metazoa - 121; Fungi - 88; Plants - 186; Viruses - 0; Other Eukaryotes - 1697 (source: NCBI BLink).  protein_id AT1G25410.1p  transcript_id AT1G25410.1  protein_id AT1G25410.1p  transcript_id AT1G25410.1  
At1g25420	chr1:008916141	0.0	W/8916141-8916190,8916361-8916493,8916571-8916674,8916765-8916936,8917055-8917195,8917609-8917980	AT1G25420.1 CDS  gene_syn F2J7.16, F2J7_16  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34220.2); Has 391 Blast hits to 384 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 89; Plants - 145; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G25420.1p  transcript_id AT1G25420.1  protein_id AT1G25420.1p  transcript_id AT1G25420.1  
At1g25420	chr1:008916592	0.0	W/8916592-8916674,8916765-8916936,8917055-8917195,8917609-8917980	AT1G25420.2 CDS  gene_syn F2J7.16, F2J7_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34220.2); Has 355 Blast hits to 355 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 66; Plants - 144; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G25420.2p  transcript_id AT1G25420.2  protein_id AT1G25420.2p  transcript_id AT1G25420.2  
At1g25420	chr1:008916592	0.0	W/8916592-8916674,8916765-8916936,8917055-8917195,8917609-8917980	AT1G25420.3 CDS  gene_syn F2J7.16, F2J7_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34220.2); Has 355 Blast hits to 355 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 66; Plants - 144; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G25420.3p  transcript_id AT1G25420.3  protein_id AT1G25420.3p  transcript_id AT1G25420.3  
At1g25422	chr1:008919087	0.0	W/8919087-8919410	AT1G25422.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68500.1).  protein_id AT1G25422.1p  transcript_id AT1G25422.1  protein_id AT1G25422.1p  transcript_id AT1G25422.1  
At1g25425	chr1:008922832	0.0	W/8922832-8923122	AT1G25425.1 CDS  gene_syn CLAVATA3/ESR-RELATED 43, CLE43  gene CLE43  go_component endomembrane system|GO:0012505||IEA  product CLE43 (CLAVATA3/ESR-RELATED 43)  note CLAVATA3/ESR-RELATED 43 (CLE43); LOCATED IN: endomembrane system; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25425.1p  transcript_id AT1G25425.1  protein_id AT1G25425.1p  transcript_id AT1G25425.1  
At1g25430	chr1:008927732	0.0	C/8927732-8933058	AT1G25430.1 mRNA_TE_gene  pseudo  gene_syn F2J7.11, F2J7_11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 8.0e-45 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)  
At1g25440	chr1:008933939	0.0	C/8933939-8934193,8934286-8935284	AT1G25440.1 CDS  gene_syn F2J7.10, F2J7_10  go_component membrane|GO:0016020|17432890|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT1G68520.1); Has 2116 Blast hits to 1317 proteins in 89 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2049; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).  protein_id AT1G25440.1p  transcript_id AT1G25440.1  protein_id AT1G25440.1p  transcript_id AT1G25440.1  
At1g25450	chr1:008938679	0.0	C/8938679-8939127,8939253-8940282	AT1G25450.1 CDS  gene_syn 3-KETOACYL-COA SYNTHASE 5, CER60, ECERIFERUM 60, F2J7.9, F2J7_9, KCS5  gene KCS5  function Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).  go_component membrane|GO:0016020|17432890|IDA  go_component endoplasmic reticulum|GO:0005783|18465198|IDA  go_process very-long-chain fatty acid metabolic process|GO:0000038|10330468|IDA  go_process response to osmotic stress|GO:0006970|18465198|IEP  go_process response to cold|GO:0009409|18465198|IEP  go_process response to light stimulus|GO:0009416|18465198|IEP  go_process cuticle development|GO:0042335|10330468|IDA  go_process pollen tube development|GO:0048868|19237690|IMP  go_function fatty acid elongase activity|GO:0009922|15277688|IDA  product KCS5 (3-KETOACYL-COA SYNTHASE 5); fatty acid elongase  note 3-KETOACYL-COA SYNTHASE 5 (KCS5); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: KCS6 (3-KETOACYL-COA SYNTHASE 6); catalytic/ transferase, transferring acyl groups other than amino-acyl groups (TAIR:AT1G68530.1); Has 2767 Blast hits to 2762 proteins in 659 species: Archae - 0; Bacteria - 899; Metazoa - 0; Fungi - 22; Plants - 1717; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).  protein_id AT1G25450.1p  transcript_id AT1G25450.1  protein_id AT1G25450.1p  transcript_id AT1G25450.1  
At1g25460	chr1:008942811	0.0	W/8942811-8942916,8943019-8943191,8943287-8943475,8943571-8943733,8943832-8944021,8944103-8944244	AT1G25460.1 CDS  gene_syn F2J7.17, F2J7_17  go_process metabolic process|GO:0008152||IEA  go_process flavonoid biosynthetic process|GO:0009813||IEA  go_process cellular metabolic process|GO:0044237||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component cellular_component|GO:0005575||ND  go_function oxidoreductase activity|GO:0016491||ISS  product oxidoreductase family protein  note oxidoreductase family protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, binding, catalytic activity; INVOLVED IN: cellular metabolic process, metabolic process, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, root, leaf; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: oxidoreductase family protein (TAIR:AT1G68540.1); Has 7620 Blast hits to 7608 proteins in 1252 species: Archae - 182; Bacteria - 2634; Metazoa - 195; Fungi - 548; Plants - 1400; Viruses - 29; Other Eukaryotes - 2632 (source: NCBI BLink).  protein_id AT1G25460.1p  transcript_id AT1G25460.1  protein_id AT1G25460.1p  transcript_id AT1G25460.1  
At1g25470	chr1:008944901	0.0	C/8944901-8945764	AT1G25470.1 CDS  gene_syn F2J7.8, F2J7_8  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G68550.2); Has 1773 Blast hits to 1772 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1769; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G25470.1p  transcript_id AT1G25470.1  protein_id AT1G25470.1p  transcript_id AT1G25470.1  
At1g25470	chr1:008944901	0.0	C/8944901-8945764	AT1G25470.2 CDS  gene_syn F2J7.8, F2J7_8  function encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product AP2 domain-containing transcription factor, putative  note AP2 domain-containing transcription factor, putative; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Pathogenesis-related genes transcriptional activator PTI6 (InterPro:IPR017392), DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AP2 domain-containing transcription factor, putative (TAIR:AT1G68550.2); Has 1773 Blast hits to 1772 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1769; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G25470.2p  transcript_id AT1G25470.2  protein_id AT1G25470.2p  transcript_id AT1G25470.2  
At1g25472	chr1:008945873	0.0	C/8945873-8945945,8946044-8946243	AT1G25472.1 CDS  gene_syn CPuORF54, Conserved peptide upstream open reading frame 54  gene CPuORF54  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF54 represents a conserved upstream opening reading frame relative to major ORF AT1G25470.1  go_component endomembrane system|GO:0012505||IEA  product CPuORF54 (Conserved peptide upstream open reading frame 54)  note Conserved peptide upstream open reading frame 54 (CPuORF54); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: CPuORF53 (Conserved peptide upstream open reading frame 53) (TAIR:AT1G68552.1); Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G25472.1p  transcript_id AT1G25472.1  protein_id AT1G25472.1p  transcript_id AT1G25472.1  
At1g25480	chr1:008948467	0.0	W/8948467-8948806,8948991-8949128,8949230-8949499,8949599-8949735,8949829-8949975,8950262-8950876	AT1G25480.1 CDS  gene_syn F2J7.18, F2J7_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0005 (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68600.1); Has 518 Blast hits to 517 proteins in 161 species: Archae - 0; Bacteria - 276; Metazoa - 0; Fungi - 18; Plants - 202; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G25480.1p  transcript_id AT1G25480.1  protein_id AT1G25480.1p  transcript_id AT1G25480.1  
At1g25490	chr1:008951700	0.0	W/8951700-8952092,8952187-8952433,8952630-8952742,8952876-8952955,8953177-8953318,8953402-8953482,8953665-8953769,8953855-8954037,8954119-8954211,8954382-8954521,8954621-8954687,8954777-8954899	AT1G25490.1 CDS  gene_syn ATB BETA BETA, EER1, ENHANCED ETHYLENE RESPONSE 1, F2J7.19, F2J7_19, PHOSPHOPROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, RCN1, REGA, ROOTS CURL IN NPA, SERINE/THREONINE PROTEIN PHOSPHATASE TYPE 2A REGULATORY SUBUNIT A  gene RCN1  function One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem  go_component cell wall|GO:0005618|16287169|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component protein phosphatase type 2A complex|GO:0000159|8641277|TAS  go_process response to ethylene stimulus|GO:0009723|11161061|IMP  go_process abscisic acid mediated signaling|GO:0009738|12417706|TAS  go_process positive regulation of abscisic acid mediated signaling|GO:0009789|12417706|IMP  go_process auxin polar transport|GO:0009926|11449059|IDA  go_process regulation of stomatal movement|GO:0010119|12417706|IMP  go_function protein phosphatase type 2A regulator activity|GO:0008601|8641277|IGI  go_function protein phosphatase type 2A regulator activity|GO:0008601|8641277|ISS  product RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator  note ROOTS CURL IN NPA (RCN1); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to ethylene stimulus, positive regulation of abscisic acid mediated signaling, abscisic acid mediated signaling, regulation of stomatal movement, auxin polar transport; LOCATED IN: cell wall, plasma membrane, protein phosphatase type 2A complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2); protein phosphatase type 2A regulator (TAIR:AT3G25800.1); Has 2195 Blast hits to 1182 proteins in 185 species: Archae - 14; Bacteria - 63; Metazoa - 1206; Fungi - 259; Plants - 211; Viruses - 0; Other Eukaryotes - 442 (source: NCBI BLink).  protein_id AT1G25490.1p  transcript_id AT1G25490.1  protein_id AT1G25490.1p  transcript_id AT1G25490.1  
At1g25500	chr1:008955437	0.0	C/8955437-8955616,8955708-8955941,8956040-8956156,8956242-8956469,8956584-8956767,8956865-8957162,8957243-8957294	AT1G25500.3 CDS  gene_syn F2J7.7, F2J7_7  go_process biological_process|GO:0008150||ND  product choline transporter-related  note choline transporter-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13760.1); Has 670 Blast hits to 667 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 101; Plants - 100; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G25500.3p  transcript_id AT1G25500.3  protein_id AT1G25500.3p  transcript_id AT1G25500.3  
At1g25500	chr1:008955437	0.0	C/8955437-8955616,8955708-8955941,8956040-8956156,8956242-8956469,8956584-8956767,8956865-8957322,8957728-8957793	AT1G25500.2 CDS  gene_syn F2J7.7, F2J7_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product choline transporter-related  note choline transporter-related; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13760.1); Has 681 Blast hits to 678 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 111; Plants - 101; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).  protein_id AT1G25500.2p  transcript_id AT1G25500.2  protein_id AT1G25500.2p  transcript_id AT1G25500.2  
At1g25500	chr1:008955595	0.0	C/8955595-8955606,8955708-8955941,8956040-8956156,8956242-8956469,8956584-8956767,8956865-8957322,8957728-8957793	AT1G25500.1 CDS  gene_syn F2J7.7, F2J7_7  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product choline transporter-related  note choline transporter-related; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13760.1); Has 638 Blast hits to 635 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 335; Fungi - 111; Plants - 89; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).  protein_id AT1G25500.1p  transcript_id AT1G25500.1  protein_id AT1G25500.1p  transcript_id AT1G25500.1  
At1g25510	chr1:008959372	0.0	C/8959372-8960823	AT1G25510.1 CDS  gene_syn F2J7.6, F2J7_6  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT3G18490.1); Has 2853 Blast hits to 2835 proteins in 271 species: Archae - 0; Bacteria - 0; Metazoa - 942; Fungi - 564; Plants - 1213; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G25510.1p  transcript_id AT1G25510.1  protein_id AT1G25510.1p  transcript_id AT1G25510.1  
At1g25520	chr1:008962324	0.0	W/8962324-8962341,8962432-8962500,8962818-8962877,8962964-8963011,8963097-8963188,8963268-8963304,8963387-8963434,8963518-8963586,8963664-8963708,8963779-8963840,8963940-8964012,8964102-8964173	AT1G25520.1 CDS  gene_syn F2J7.20, F2J7_20  go_component membrane|GO:0016020||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68650.1); Has 1239 Blast hits to 1181 proteins in 440 species: Archae - 13; Bacteria - 667; Metazoa - 131; Fungi - 99; Plants - 104; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).  protein_id AT1G25520.1p  transcript_id AT1G25520.1  protein_id AT1G25520.1p  transcript_id AT1G25520.1  
At1g25530	chr1:008964827	0.0	C/8964827-8964925,8965014-8965082,8965188-8965279,8965386-8965885,8966536-8966919,8967146-8967291,8967359-8967391	AT1G25530.1 CDS  gene_syn F2J7.5, F2J7_5  go_component membrane|GO:0016020||ISS  go_process amino acid transport|GO:0006865||ISS  go_function amino acid transmembrane transporter activity|GO:0015171||ISS  product lysine and histidine specific transporter, putative  note lysine and histidine specific transporter, putative; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine and histidine specific transporter, putative (TAIR:AT1G67640.1); Has 2150 Blast hits to 2144 proteins in 183 species: Archae - 2; Bacteria - 19; Metazoa - 787; Fungi - 349; Plants - 832; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).  protein_id AT1G25530.1p  transcript_id AT1G25530.1  protein_id AT1G25530.1p  transcript_id AT1G25530.1  
At1g25540	chr1:008969392	0.0	C/8969392-8969895,8969979-8970065,8970407-8970491,8970587-8970655,8970788-8970816,8970963-8971016,8971092-8971889,8972189-8972256,8972373-8972589,8972733-8972798,8972891-8973094,8973299-8973301	AT1G25540.2 CDS  gene_syn F2J7.4, F2J7_4, PFT1, PHYTOCHROME AND FLOWERING TIME 1  gene PFT1  function Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.  go_component nucleus|GO:0005634|12815435|IDA  go_process red, far-red light phototransduction|GO:0009585|18790998|IMP  go_process response to red light|GO:0010114|12815435|IMP  go_process response to far red light|GO:0010218|12815435|IMP  go_process positive regulation of transcription|GO:0045941|12815435|IEP  go_function transcription coactivator activity|GO:0003713|12815435|NAS  product PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator  note PHYTOCHROME AND FLOWERING TIME 1 (PFT1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: positive regulation of transcription, red, far-red light phototransduction, response to red light, response to far red light; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 135317 Blast hits to 41570 proteins in 1493 species: Archae - 34; Bacteria - 10310; Metazoa - 49371; Fungi - 12702; Plants - 8529; Viruses - 890; Other Eukaryotes - 53481 (source: NCBI BLink).  protein_id AT1G25540.2p  transcript_id AT1G25540.2  protein_id AT1G25540.2p  transcript_id AT1G25540.2  
At1g25540	chr1:008969392	0.0	C/8969392-8969895,8969979-8970065,8970407-8970491,8970587-8970655,8970788-8970816,8970963-8971016,8971092-8971889,8972189-8972256,8972373-8972589,8972733-8972798,8972891-8973094,8973299-8973429,8973551-8973614,8973807-8973837,8974343-8974446	AT1G25540.1 CDS  gene_syn F2J7.4, F2J7_4, PFT1, PHYTOCHROME AND FLOWERING TIME 1  gene PFT1  function Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.  go_component nucleus|GO:0005634|12815435|IDA  go_process red, far-red light phototransduction|GO:0009585|18790998|IMP  go_process response to red light|GO:0010114|12815435|IMP  go_process response to far red light|GO:0010218|12815435|IMP  go_process positive regulation of transcription|GO:0045941|12815435|IEP  go_function transcription coactivator activity|GO:0003713|12815435|NAS  product PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator  note PHYTOCHROME AND FLOWERING TIME 1 (PFT1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: positive regulation of transcription, red, far-red light phototransduction, response to red light, response to far red light; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); Has 135865 Blast hits to 41609 proteins in 1494 species: Archae - 34; Bacteria - 10317; Metazoa - 49441; Fungi - 12720; Plants - 8624; Viruses - 890; Other Eukaryotes - 53839 (source: NCBI BLink).  protein_id AT1G25540.1p  transcript_id AT1G25540.1  protein_id AT1G25540.1p  transcript_id AT1G25540.1  
At1g25550	chr1:008976644	0.0	W/8976644-8976788,8976881-8977435,8977523-8977599,8977685-8977942	AT1G25550.1 CDS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677|11118137|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor  note myb family transcription factor; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb family transcription factor (TAIR:AT1G68670.1); Has 883 Blast hits to 881 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 869; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G25550.1p  transcript_id AT1G25550.1  protein_id AT1G25550.1p  transcript_id AT1G25550.1  
At1g25560	chr1:008981891	0.0	C/8981891-8982976	AT1G25560.1 CDS  gene_syn F2J7.3, F2J7_3, TEM1, TEMPRANILLO 1  gene TEM1  function Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT.  go_component chloroplast|GO:0009507||IEA  go_process photoperiodism, flowering|GO:0048573|18718758|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product TEM1 (TEMPRANILLO 1); transcription factor  note TEMPRANILLO 1 (TEM1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: photoperiodism, flowering; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor/ transcription repressor (TAIR:AT1G68840.1); Has 3890 Blast hits to 3756 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3867; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G25560.1p  transcript_id AT1G25560.1  protein_id AT1G25560.1p  transcript_id AT1G25560.1  
At1g25570	chr1:008992183	0.0	C/8992183-8992292,8992382-8992590,8992725-8992802,8992987-8993055,8993279-8993347,8993488-8993559,8993936-8994086,8994224-8995273,8995352-8995430	AT1G25570.1 CDS  gene_syn F2J7.2  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function protein binding|GO:0005515||IEA  product leucine-rich repeat protein-related  note leucine-rich repeat protein-related; FUNCTIONS IN: protein binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: AtRLP4 (Receptor Like Protein 4); protein binding (TAIR:AT1G28340.1); Has 22991 Blast hits to 6621 proteins in 344 species: Archae - 2; Bacteria - 311; Metazoa - 61; Fungi - 5; Plants - 21791; Viruses - 0; Other Eukaryotes - 821 (source: NCBI BLink).  protein_id AT1G25570.1p  transcript_id AT1G25570.1  protein_id AT1G25570.1p  transcript_id AT1G25570.1  
At1g25580	chr1:008997064	0.0	C/8997064-8997117,8997206-8997649,8998012-8998526,8998616-8998802,8998894-8999035,8999593-8999600	AT1G25580.1 CDS  gene_syn ANAC008, Arabidopsis NAC domain containing protein 8, F2J7.1  gene ANAC008  go_process regulation of transcription|GO:0045449||IEA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ANAC008 (Arabidopsis NAC domain containing protein 8); transcription factor  note Arabidopsis NAC domain containing protein 8 (ANAC008); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac044 (Arabidopsis NAC domain containing protein 44); transcription factor (TAIR:AT3G01600.1); Has 1166 Blast hits to 1164 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 5; Plants - 1137; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G25580.1p  transcript_id AT1G25580.1  protein_id AT1G25580.1p  transcript_id AT1G25580.1  
At1g25682	chr1:009002532	0.0	C/9002532-9002885,9002970-9003133,9003254-9003413,9003545-9003653,9003951-9004093,9004548-9004550	AT1G25682.1 CDS  gene_syn F14G11.11, F14G11_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product cell cycle control protein-related  note cell cycle control protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25988.1); Has 517 Blast hits to 517 proteins in 152 species: Archae - 0; Bacteria - 5; Metazoa - 212; Fungi - 149; Plants - 56; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).  protein_id AT1G25682.1p  transcript_id AT1G25682.1  protein_id AT1G25682.1p  transcript_id AT1G25682.1  
At1g25784	chr1:009005557	0.0	W/9005557-9010027	AT1G25784.1 mRNA_TE_gene  pseudo  gene_syn F14G11.3, F14G11_3  note Transposable element gene, Mutator-like transposase family, has a 3.7e-80 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g25886	chr1:009010258	0.0	C/9010258-9015226	AT1G25886.1 mRNA_TE_gene  pseudo  gene_syn F14G11.4, F14G11_4  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14770.2); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)  
At1g25988	chr1:009016252	0.0	C/9016252-9016372,9016455-9016563,9016672-9016797,9016918-9017023,9017370-9017450	AT1G25988.1 CDS  gene_syn F14G11.5, F14G11_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: cell cycle control protein-related (TAIR:AT1G25682.1); Has 129 Blast hits to 129 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 7; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G25988.1p  transcript_id AT1G25988.1  protein_id AT1G25988.1p  transcript_id AT1G25988.1  
At1g26090	chr1:009020509	0.0	W/9020509-9020748,9020973-9021116,9021211-9021285,9021381-9021574,9021663-9021834,9021913-9022323,9022488-9022619	AT1G26090.1 CDS  gene_syn F14G11.6  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 719 Blast hits to 710 proteins in 233 species: Archae - 67; Bacteria - 402; Metazoa - 88; Fungi - 67; Plants - 27; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G26090.1p  transcript_id AT1G26090.1  protein_id AT1G26090.1p  transcript_id AT1G26090.1  
At1g26100	chr1:009022716	0.0	C/9022716-9023054,9023486-9023682,9023814-9023865,9023959-9024081	AT1G26100.1 CDS  gene_syn F14G11.7, F14G11_7  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_component integral to membrane|GO:0016021||ISS  go_function carbon-monoxide oxygenase activity|GO:0008805||ISS  product cytochrome B561 family protein  note cytochrome B561 family protein; FUNCTIONS IN: carbon-monoxide oxygenase activity; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: ACYB-1; carbon-monoxide oxygenase (TAIR:AT5G38630.1); Has 437 Blast hits to 437 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 323; Fungi - 5; Plants - 100; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).  protein_id AT1G26100.1p  transcript_id AT1G26100.1  protein_id AT1G26100.1p  transcript_id AT1G26100.1  
At1g26110	chr1:009024616	0.0	C/9024616-9024807,9024947-9025057,9025138-9025311,9025440-9025473,9025605-9025624,9025797-9026756,9026847-9026921,9027001-9027101,9027406-9027556	AT1G26110.2 CDS  gene_syn F14G11.8, F14G11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45330.1).  protein_id AT1G26110.2p  transcript_id AT1G26110.2  protein_id AT1G26110.2p  transcript_id AT1G26110.2  
At1g26110	chr1:009024616	0.0	C/9024616-9024807,9024947-9025057,9025138-9025311,9025440-9025511,9025797-9026756,9026847-9026921,9027001-9027101,9027406-9027556	AT1G26110.1 CDS  gene_syn F14G11.8, F14G11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45330.1); Has 43564 Blast hits to 18145 proteins in 930 species: Archae - 33; Bacteria - 8614; Metazoa - 16661; Fungi - 5004; Plants - 6818; Viruses - 592; Other Eukaryotes - 5842 (source: NCBI BLink).  protein_id AT1G26110.1p  transcript_id AT1G26110.1  protein_id AT1G26110.1p  transcript_id AT1G26110.1  
At1g26120	chr1:009028656	0.0	C/9028656-9028808,9028895-9028985,9029076-9029219,9029329-9029394,9029767-9029907,9029996-9030097,9030226-9030300,9030401-9030481,9030597-9030666,9030764-9030840,9030972-9031402	AT1G26120.1 CDS  gene_syn F14G11.9, F14G11_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product esterase-related  note esterase-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Carboxylesterase, type B (InterPro:IPR002018); BEST Arabidopsis thaliana protein match is: ATPCME (PRENYLCYSTEINE METHYLESTERASE); prenylcysteine methylesterase (TAIR:AT5G15860.1); Has 6064 Blast hits to 6049 proteins in 896 species: Archae - 44; Bacteria - 2838; Metazoa - 1611; Fungi - 410; Plants - 133; Viruses - 5; Other Eukaryotes - 1023 (source: NCBI BLink).  protein_id AT1G26120.1p  transcript_id AT1G26120.1  protein_id AT1G26120.1p  transcript_id AT1G26120.1  
At1g26130	chr1:009033600	0.0	W/9033600-9034004,9034274-9035619,9035703-9035813,9035887-9036163,9036256-9036344,9036447-9036552,9036669-9036878,9036969-9037094,9037176-9037274,9037371-9037562,9037653-9038246	AT1G26130.1 CDS  gene_syn F28B23.19, F28B23_19  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process metabolic process|GO:0008152||IEA  go_process phospholipid transport|GO:0015914||IEA  go_function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|GO:0015662||ISS  product haloacid dehalogenase-like hydrolase family protein  note haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G68710.1); Has 8080 Blast hits to 7119 proteins in 907 species: Archae - 80; Bacteria - 1883; Metazoa - 2661; Fungi - 1345; Plants - 521; Viruses - 2; Other Eukaryotes - 1588 (source: NCBI BLink).  protein_id AT1G26130.1p  transcript_id AT1G26130.1  protein_id AT1G26130.1p  transcript_id AT1G26130.1  
At1g26140	chr1:009038708	0.0	C/9038708-9039083,9039428-9039540	AT1G26140.1 CDS  gene_syn F28B23.18, F28B23_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68700.1); Has 21 Blast hits to 21 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26140.1p  transcript_id AT1G26140.1  protein_id AT1G26140.1p  transcript_id AT1G26140.1  
At1g26150	chr1:009039790	0.0	C/9039790-9039984,9040057-9040218,9040296-9040443,9040539-9040615,9040705-9040775,9040898-9040984,9041060-9041470,9041736-9042873	AT1G26150.1 CDS  gene_syn ATPERK10, F28B23.17, F28B23_17, PERK10, PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10  gene PERK10  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein kinase activity|GO:0004672||ISS  product PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10); ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10 (PERK10); FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATP binding / protein kinase/ protein serine/threonine kinase (TAIR:AT1G68690.1); Has 437812 Blast hits to 190668 proteins in 4392 species: Archae - 931; Bacteria - 74625; Metazoa - 185213; Fungi - 57061; Plants - 50943; Viruses - 9960; Other Eukaryotes - 59079 (source: NCBI BLink).  protein_id AT1G26150.1p  transcript_id AT1G26150.1  protein_id AT1G26150.1p  transcript_id AT1G26150.1  
At1g26160	chr1:009044784	0.0	C/9044784-9044869,9044951-9044992,9045085-9045121,9045240-9045319,9045401-9045511,9045835-9045872,9046403-9046527,9046688-9046945	AT1G26160.1 CDS  gene_syn F28B23.16, F28B23_16  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function catalytic activity|GO:0003824||ISS  product metal-dependent phosphohydrolase HD domain-containing protein  note metal-dependent phosphohydrolase HD domain-containing protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD region, subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD region (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: metal-dependent phosphohydrolase HD domain-containing protein (TAIR:AT2G23820.2); Has 945 Blast hits to 927 proteins in 398 species: Archae - 83; Bacteria - 512; Metazoa - 101; Fungi - 100; Plants - 40; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT1G26160.1p  transcript_id AT1G26160.1  protein_id AT1G26160.1p  transcript_id AT1G26160.1  
At1g26170	chr1:009047539	0.0	C/9047539-9047589,9047671-9047751,9047847-9047900,9047979-9048104,9048197-9048262,9048457-9048534,9048624-9048736,9048848-9048962,9049096-9049285,9049621-9049730,9049811-9049906,9050005-9050067,9050174-9050251,9050410-9050522,9050618-9050675,9050762-9050885,9050962-9051023,9051102-9051166,9051253-9051322,9051406-9051465,9051642-9051772,9051903-9051978,9052290-9052358,9052450-9052497,9052649-9052791,9052878-9052941,9053043-9053159,9053252-9053338,9053464-9053579,9053704-9053875,9053958-9054050,9054155-9054216,9054321-9054438	AT1G26170.1 CDS  gene_syn F28B23.15, F28B23_15  go_component nucleus|GO:0005634||IEA  go_component nuclear pore|GO:0005643||IEA  go_component cytoplasm|GO:0005737||IEA  go_process protein import into nucleus, docking|GO:0000059||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_function binding|GO:0005488||IEA  go_function protein transporter activity|GO:0008565||IEA  go_component nucleus|GO:0005634||ISS  go_component nuclear pore|GO:0005643||ISS  go_component cytoplasm|GO:0005737||ISS  go_process protein import into nucleus, docking|GO:0000059||ISS  go_function protein transporter activity|GO:0008565||ISS  product binding / protein transporter  note binding / protein transporter; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding / protein transporter (TAIR:AT3G59020.2); Has 1115 Blast hits to 1108 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 550; Fungi - 363; Plants - 103; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G26170.1p  transcript_id AT1G26170.1  protein_id AT1G26170.1p  transcript_id AT1G26170.1  
At1g26180	chr1:009054824	0.0	W/9054824-9055171,9055393-9055473,9055578-9055637,9055720-9055763,9055918-9055960,9056053-9056124,9056217-9056318,9056407-9056526	AT1G26180.1 CDS  gene_syn F28B23.14, F28B23_14  product unknown protein  note unknown protein; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 229 Blast hits to 229 proteins in 65 species: Archae - 0; Bacteria - 106; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).  protein_id AT1G26180.1p  transcript_id AT1G26180.1  protein_id AT1G26180.1p  transcript_id AT1G26180.1  
At1g26190	chr1:009057285	0.0	C/9057285-9057539,9057623-9057895,9057990-9058104,9058188-9058315,9058394-9058516,9058670-9058864,9058998-9059171,9059293-9059406,9059497-9059692,9059874-9059988,9060097-9060433	AT1G26190.1 CDS  gene_syn F28B23.13, F28B23_13  go_process cAMP biosynthetic process|GO:0006171||IEA  go_process metabolic process|GO:0008152||IEA  go_function adenylate cyclase activity|GO:0004016||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biosynthetic process|GO:0009058||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product phosphoribulokinase/uridine kinase family protein  note phosphoribulokinase/uridine kinase family protein; FUNCTIONS IN: adenylate cyclase activity, kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: biosynthetic process, cAMP biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764), Adenylate cyclase (InterPro:IPR008172); BEST Arabidopsis thaliana protein match is: phosphoribulokinase/uridine kinase family protein (TAIR:AT1G73980.1); Has 2755 Blast hits to 2699 proteins in 936 species: Archae - 19; Bacteria - 1714; Metazoa - 373; Fungi - 94; Plants - 171; Viruses - 2; Other Eukaryotes - 382 (source: NCBI BLink).  protein_id AT1G26190.1p  transcript_id AT1G26190.1  protein_id AT1G26190.1p  transcript_id AT1G26190.1  
At1g26200	chr1:009063471	0.0	C/9063471-9063505,9063617-9063822,9063931-9064116,9064210-9064365,9064454-9064674,9064780-9064914	AT1G26200.1 CDS  gene_syn F28B23.26  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (TAIR:AT1G13580.2).  protein_id AT1G26200.1p  transcript_id AT1G26200.1  protein_id AT1G26200.1p  transcript_id AT1G26200.1  
At1g26208	chr1:009066636	0.0	C/9066636-9068432	AT1G26208.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G26210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26208.1  
At1g26210	chr1:009067524	0.0	W/9067524-9067970	AT1G26210.1 CDS  gene_syn F28B23.12, F28B23_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68870.1); Has 421 Blast hits to 382 proteins in 90 species: Archae - 0; Bacteria - 20; Metazoa - 121; Fungi - 70; Plants - 55; Viruses - 6; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G26210.1p  transcript_id AT1G26210.1  protein_id AT1G26210.1p  transcript_id AT1G26210.1  
At1g26208	chr1:009067732	0.0	C/9067732-9069238	AT1G26208.2 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G26210  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26208.2  
At1g26218	chr1:009071058	0.0	C/9071058-9072273	AT1G26218.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G26220  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26218.1  
At1g26220	chr1:009071157	0.0	W/9071157-9071750	AT1G26220.1 CDS  gene_syn F28B23.27, F28B23_27  go_component chloroplast|GO:0009507|18431481|IDA  go_process metabolic process|GO:0008152||IEA  go_function N-acetyltransferase activity|GO:0008080||IEA  go_process metabolic process|GO:0008152||ISS  go_function N-acetyltransferase activity|GO:0008080||ISS  product GCN5-related N-acetyltransferase (GNAT) family protein  note GCN5-related N-acetyltransferase (GNAT) family protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase (TAIR:AT1G32070.3); Has 851 Blast hits to 851 proteins in 219 species: Archae - 14; Bacteria - 530; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).  protein_id AT1G26220.1p  transcript_id AT1G26220.1  protein_id AT1G26220.1p  transcript_id AT1G26220.1  
At1g26230	chr1:009072388	0.0	C/9072388-9072606,9072686-9072778,9072847-9072939,9073016-9073120,9073197-9073268,9073337-9073414,9073562-9073731,9073832-9074066,9074154-9074396,9074494-9074589,9074678-9074815,9074910-9075035,9075105-9075272	AT1G26230.1 CDS  gene_syn F28B23.11, F28B23_11  go_component chloroplast|GO:0009507|18431481|IDA  go_process cellular protein metabolic process|GO:0044267||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  product chaperonin, putative  note chaperonin, putative; FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: cellular protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding (TAIR:AT1G55490.2); Has 24360 Blast hits to 24320 proteins in 5137 species: Archae - 390; Bacteria - 14007; Metazoa - 1488; Fungi - 952; Plants - 459; Viruses - 2; Other Eukaryotes - 7062 (source: NCBI BLink).  protein_id AT1G26230.1p  transcript_id AT1G26230.1  protein_id AT1G26230.1p  transcript_id AT1G26230.1  
At1g26233	chr1:009076048	0.0	C/9076048-9076182	AT1G26233.1 snoRNA  gene_syn SDMALL NUCLEOLAR RNA 95, SNOR95  gene SNOR95  function Encodes a H/ACA-box snoRNA (snoR95). Gb: AJ505672  go_component box H/ACA snoRNP complex|GO:0031429||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product SNOR95 (SDMALL NUCLEOLAR RNA 95); snoRNA  transcript_id AT1G26233.1  
At1g26235	chr1:009076447	0.0	C/9076447-9076572	AT1G26235.1 ncRNA  function Encodes a snmRNA. Gb: AJ505711  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26235.1  
At1g26240	chr1:009078140	0.0	C/9078140-9079576	AT1G26240.1 CDS  gene_syn F28B23.10, F28B23_10  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin-like family protein  note proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 321227 Blast hits to 31588 proteins in 1214 species: Archae - 1075; Bacteria - 49709; Metazoa - 123072; Fungi - 39590; Plants - 51687; Viruses - 9561; Other Eukaryotes - 46533 (source: NCBI BLink).  protein_id AT1G26240.1p  transcript_id AT1G26240.1  protein_id AT1G26240.1p  transcript_id AT1G26240.1  
At1g26250	chr1:009083903	0.0	W/9083903-9085234	AT1G26250.1 CDS  gene_syn F28B23.9, F28B23_9  go_component endomembrane system|GO:0012505||IEA  go_process plant-type cell wall organization|GO:0009664||IEA  go_function structural constituent of cell wall|GO:0005199||IEA  product proline-rich extensin, putative  note proline-rich extensin, putative; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Extensin-like region (InterPro:IPR006706); Has 254179 Blast hits to 36300 proteins in 1345 species: Archae - 786; Bacteria - 38672; Metazoa - 98390; Fungi - 32269; Plants - 40660; Viruses - 7285; Other Eukaryotes - 36117 (source: NCBI BLink).  protein_id AT1G26250.1p  transcript_id AT1G26250.1  protein_id AT1G26250.1p  transcript_id AT1G26250.1  
At1g26260	chr1:009087214	0.0	W/9087214-9087391,9087545-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.3 CDS  gene_syn CIB5, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5, F28B23.8, F28B23_8  gene CIB5  function Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of flower development|GO:0009911|18988809|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription factor  note CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5 (CIB5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.2); Has 1120 Blast hits to 1119 proteins in 79 species: Archae - 0; Bacteria - 2; Metazoa - 26; Fungi - 19; Plants - 1063; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G26260.3p  transcript_id AT1G26260.3  protein_id AT1G26260.3p  transcript_id AT1G26260.3  
At1g26260	chr1:009087214	0.0	W/9087214-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.1 CDS  gene_syn CIB5, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5, F28B23.8, F28B23_8  gene CIB5  function Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of flower development|GO:0009911|18988809|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription factor  note CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5 (CIB5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.2); Has 1129 Blast hits to 1129 proteins in 79 species: Archae - 0; Bacteria - 2; Metazoa - 27; Fungi - 19; Plants - 1073; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G26260.1p  transcript_id AT1G26260.1  protein_id AT1G26260.1p  transcript_id AT1G26260.1  
At1g26260	chr1:009087214	0.0	W/9087214-9087762,9087836-9088003,9088089-9088154,9088256-9088324,9088435-9088506,9088595-9088732,9088837-9088924,9089013-9089035	AT1G26260.2 CDS  gene_syn CIB5, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5, F28B23.8, F28B23_8  gene CIB5  function Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of flower development|GO:0009911|18988809|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5); DNA binding / transcription factor  note CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5 (CIB5); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G68920.2); Has 1129 Blast hits to 1129 proteins in 79 species: Archae - 0; Bacteria - 2; Metazoa - 27; Fungi - 19; Plants - 1073; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G26260.2p  transcript_id AT1G26260.2  protein_id AT1G26260.2p  transcript_id AT1G26260.2  
At1g26270	chr1:009089822	0.0	C/9089822-9091714	AT1G26270.1 CDS  gene_syn F28B23.7, F28B23_7  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT2G03890.1); Has 429 Blast hits to 418 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 149; Fungi - 63; Plants - 133; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).  protein_id AT1G26270.1p  transcript_id AT1G26270.1  protein_id AT1G26270.1p  transcript_id AT1G26270.1  
At1g26300	chr1:009096023	0.0	C/9096023-9096088,9096176-9096225,9096431-9096627,9098941-9099038,9099140-9099246,9099314-9099746	AT1G26300.1 CDS  gene_syn F28B23.4, F28B23_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69030.1); Has 146 Blast hits to 143 proteins in 27 species: Archae - 2; Bacteria - 4; Metazoa - 9; Fungi - 4; Plants - 98; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G26300.1p  transcript_id AT1G26300.1  protein_id AT1G26300.1p  transcript_id AT1G26300.1  
At1g26290	chr1:009098051	0.0	W/9098051-9098080,9098157-9098555	AT1G26290.1 CDS  gene_syn F28B23.5, F28B23_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 121 Blast hits to 107 proteins in 33 species: Archae - 0; Bacteria - 6; Metazoa - 15; Fungi - 3; Plants - 7; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G26290.1p  transcript_id AT1G26290.1  protein_id AT1G26290.1p  transcript_id AT1G26290.1  
At1g26300	chr1:009098937	0.0	C/9098937-9099038,9099140-9099246,9099314-9099746	AT1G26300.2 CDS  gene_syn F28B23.4, F28B23_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product BSD domain-containing protein  note BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69030.1); Has 115 Blast hits to 114 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G26300.2p  transcript_id AT1G26300.2  protein_id AT1G26300.2p  transcript_id AT1G26300.2  
At1g26310	chr1:009100330	0.0	C/9100330-9100429,9100644-9100792,9101393-9101434,9101646-9101687,9101822-9101921,9102010-9102080,9102192-9102270,9103326-9103510	AT1G26310.1 CDS  gene_syn CAL, CAL1, CAULIFLOWER, F28B23.25, F28B23_25, MADS3, agl10  gene CAL  function Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants.  go_component nucleus|GO:0005634||IEA  go_process positive regulation of flower development|GO:0009911|10648231|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  go_function transcription factor activity|GO:0003700|7824951|TAS  go_function transcription factor activity|GO:0003700||ISS  product CAL (CAULIFLOWER); DNA binding / transcription factor  note CAULIFLOWER (CAL); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AP1 (APETALA1); DNA binding / protein binding / protein heterodimerization/ transcription activator/ transcription factor (TAIR:AT1G69120.1); Has 5920 Blast hits to 5907 proteins in 735 species: Archae - 6; Bacteria - 19; Metazoa - 723; Fungi - 209; Plants - 4769; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).  protein_id AT1G26310.1p  transcript_id AT1G26310.1  protein_id AT1G26310.1p  transcript_id AT1G26310.1  
At1g26320	chr1:009105240	0.0	W/9105240-9105485,9105923-9106103,9106233-9106399,9106482-9106564,9106651-9107029	AT1G26320.1 CDS  gene_syn F28B23.3, F28B23_3  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_process response to oxidative stress|GO:0006979|7592828|IEP  product NADP-dependent oxidoreductase, putative  note NADP-dependent oxidoreductase, putative; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding (InterPro:IPR016040), Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: NADP-dependent oxidoreductase, putative (TAIR:AT3G03080.1); Has 10522 Blast hits to 10506 proteins in 1017 species: Archae - 65; Bacteria - 4623; Metazoa - 739; Fungi - 660; Plants - 316; Viruses - 0; Other Eukaryotes - 4119 (source: NCBI BLink).  protein_id AT1G26320.1p  transcript_id AT1G26320.1  protein_id AT1G26320.1p  transcript_id AT1G26320.1  
At1g26330	chr1:009107625	0.0	W/9107625-9107738,9108186-9108293,9108377-9108508,9109099-9109605,9109737-9109851,9109969-9110289,9110401-9110832,9110937-9111784,9111877-9111962,9112048-9112266,9112386-9112514,9112698-9113042,9113216-9113331,9113423-9113520	AT1G26330.1 CDS  gene_syn F28B23.2, F28B23_2  go_component nucleus|GO:0005634||IEA  go_function DNA binding|GO:0003677||IEA  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), FY-rich, C-terminal (InterPro:IPR003889), WD40/YVTN repeat-like (InterPro:IPR015943); Has 235 Blast hits to 140 proteins in 49 species: Archae - 0; Bacteria - 23; Metazoa - 65; Fungi - 14; Plants - 25; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G26330.1p  transcript_id AT1G26330.1  protein_id AT1G26330.1p  transcript_id AT1G26330.1  
At1g26340	chr1:009113992	0.0	W/9113992-9114078,9114335-9114401,9114502-9114755	AT1G26340.1 CDS  gene_syn ARABIDOPSIS CYTOCHROME B5 ISOFORM A, ATCB5-A, B5  6, CB5-A, CYTOCHROME B5 ISOFORM A, F28B23.1  gene CB5-A  function encodes a member of the cytochromes b5 family of proteins that localizes to the outer envelope of the chloroplast. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro.  go_component chloroplast outer membrane|GO:0009707|17322552|IDA  go_component stromule|GO:0010319|17322552|IDA  go_function heme binding|GO:0020037|17322552|ISS  product CB5-A (CYTOCHROME B5 ISOFORM A); heme binding  note CYTOCHROME B5 ISOFORM A (CB5-A); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast outer membrane, stromule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: CB5-E (CYTOCHROME B5 ISOFORM E); heme binding (TAIR:AT5G53560.1); Has 3088 Blast hits to 3061 proteins in 380 species: Archae - 1; Bacteria - 19; Metazoa - 911; Fungi - 1091; Plants - 550; Viruses - 3; Other Eukaryotes - 513 (source: NCBI BLink).  protein_id AT1G26340.1p  transcript_id AT1G26340.1  protein_id AT1G26340.1p  transcript_id AT1G26340.1  
At1g26350	chr1:009116010	0.0	C/9116010-9116164,9116619-9116781	AT1G26350.1 CDS  gene_syn F28B23.28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel; EXPRESSED DURING: petal differentiation and expansion stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26350.1p  transcript_id AT1G26350.1  protein_id AT1G26350.1p  transcript_id AT1G26350.1  
At1g26355	chr1:009117950	0.0	C/9117950-9118033,9118354-9118611	AT1G26355.1 CDS  gene_syn SP1L1, SPIRAL1-LIKE1  gene SP1L1  function SPIRAL1-LIKE1 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. GUS expression was detected only in pollen; however, no endogenous transcript was found.  product SP1L1 (SPIRAL1-LIKE1)  note SPIRAL1-LIKE1 (SP1L1); BEST Arabidopsis thaliana protein match is: SP1L2 (SPIRAL1-LIKE2) (TAIR:AT1G69230.2); Has 2 Blast hits to 2 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26355.1p  transcript_id AT1G26355.1  protein_id AT1G26355.1p  transcript_id AT1G26355.1  
At1g26360	chr1:009119021	0.0	C/9119021-9119308,9119390-9119521,9119938-9120081,9120179-9120418,9120673-9121203	AT1G26360.1 CDS  gene_syn ARABIDOPSIS THALIANA METHYL ESTERASE 13, ATMES13, MES13, METHYL ESTERASE 13, T1K7.26, T1K7_26  gene MES13  function Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.  go_component chloroplast|GO:0009507||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function hydrolase activity|GO:0016787||ISS  product MES13 (METHYL ESTERASE 13); hydrolase  note METHYL ESTERASE 13 (MES13); FUNCTIONS IN: hydrolase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: MES15 (METHYL ESTERASE 15); hydrolase (TAIR:AT1G69240.1); Has 1349 Blast hits to 1349 proteins in 350 species: Archae - 4; Bacteria - 735; Metazoa - 12; Fungi - 35; Plants - 344; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).  protein_id AT1G26360.1p  transcript_id AT1G26360.1  protein_id AT1G26360.1p  transcript_id AT1G26360.1  
At1g26370	chr1:009122030	0.0	C/9122030-9122213,9122323-9122457,9122544-9122743,9122834-9123065,9123239-9123424,9123544-9123704,9123808-9124011,9124128-9124545,9124649-9124865,9124964-9125044,9125131-9125180,9125283-9125368	AT1G26370.1 CDS  gene_syn T1K7.25, T1K7_25  go_component chloroplast|GO:0009507||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process biological_process|GO:0008150||ND  go_function RNA helicase activity|GO:0003724||ISS  product RNA helicase, putative  note RNA helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), Region of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 6916 Blast hits to 6404 proteins in 949 species: Archae - 2; Bacteria - 1916; Metazoa - 1973; Fungi - 797; Plants - 383; Viruses - 390; Other Eukaryotes - 1455 (source: NCBI BLink).  protein_id AT1G26370.1p  transcript_id AT1G26370.1  protein_id AT1G26370.1p  transcript_id AT1G26370.1  
At1g26380	chr1:009126901	0.0	C/9126901-9128508	AT1G26380.1 CDS  gene_syn T1K7.24, T1K7_24  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26390.1); Has 2742 Blast hits to 2652 proteins in 436 species: Archae - 26; Bacteria - 1103; Metazoa - 18; Fungi - 1094; Plants - 339; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT1G26380.1p  transcript_id AT1G26380.1  protein_id AT1G26380.1p  transcript_id AT1G26380.1  
At1g26390	chr1:009130164	0.0	C/9130164-9131756	AT1G26390.1 CDS  gene_syn T1K7.23, T1K7_23  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26420.1); Has 2605 Blast hits to 2524 proteins in 398 species: Archae - 19; Bacteria - 1005; Metazoa - 7; Fungi - 1089; Plants - 331; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).  protein_id AT1G26390.1p  transcript_id AT1G26390.1  protein_id AT1G26390.1p  transcript_id AT1G26390.1  
At1g26400	chr1:009133291	0.0	C/9133291-9134874	AT1G26400.1 CDS  gene_syn T1K7.22, T1K7_22  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26390.1); Has 2512 Blast hits to 2422 proteins in 391 species: Archae - 9; Bacteria - 990; Metazoa - 7; Fungi - 1075; Plants - 330; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G26400.1p  transcript_id AT1G26400.1  protein_id AT1G26400.1p  transcript_id AT1G26400.1  
At1g26410	chr1:009138774	0.0	C/9138774-9140432	AT1G26410.1 CDS  gene_syn T1K7.21, T1K7_21  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_component cellular_component|GO:0005575||ND  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26420.1); Has 2615 Blast hits to 2478 proteins in 397 species: Archae - 16; Bacteria - 1014; Metazoa - 4; Fungi - 1103; Plants - 356; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G26410.1p  transcript_id AT1G26410.1  protein_id AT1G26410.1p  transcript_id AT1G26410.1  
At1g26420	chr1:009141715	0.0	C/9141715-9143304	AT1G26420.1 CDS  gene_syn T1K7.20, T1K7_20  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G26390.1); Has 2477 Blast hits to 2336 proteins in 370 species: Archae - 10; Bacteria - 986; Metazoa - 0; Fungi - 1049; Plants - 330; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).  protein_id AT1G26420.1p  transcript_id AT1G26420.1  protein_id AT1G26420.1p  transcript_id AT1G26420.1  
At1g26430	chr1:009143810	0.0	W/9143810-9143883	AT1G26430.1 tRNA  gene_syn 51948.TRNA-ASN-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Asn (anticodon: GTT)  transcript_id AT1G26430.1  
At1g26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144918,9144995-9145195,9145301-9145340,9145413-9145673	AT1G26440.1 CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 5, ATUPS5, T1K7.19, T1K7_19, UPS5  gene ATUPS5  function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine  go_component endomembrane system|GO:0012505||IEA  product ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)  note UPS5; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: UPS2 (UREIDE PERMEASE 2) (TAIR:AT2G03530.2); Has 129 Blast hits to 128 proteins in 27 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G26440.1p  transcript_id AT1G26440.1  protein_id AT1G26440.1p  transcript_id AT1G26440.1  
At1g26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144921,9144995-9145114,9145301-9145340,9145413-9145673	AT1G26440.4 CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 5, ATUPS5, T1K7.19, T1K7_19, UPS5  gene ATUPS5  function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine  go_component endomembrane system|GO:0012505||IEA  product ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)  note ARABIDOPSIS THALIANA UREIDE PERMEASE 5 (ATUPS5); LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS4 (Arabidopsis thaliana ureide permease 4) (TAIR:AT2G03520.1); Has 136 Blast hits to 128 proteins in 27 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G26440.4p  transcript_id AT1G26440.4  protein_id AT1G26440.4p  transcript_id AT1G26440.4  
At1g26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144921,9144995-9145340,9145413-9145673	AT1G26440.2 CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 5, ATUPS5, T1K7.19, T1K7_19, UPS5  gene ATUPS5  function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine  go_component endomembrane system|GO:0012505||IEA  go_process allantoin transport|GO:0015720|16738859|IGI  go_process uracil transport|GO:0015857|16738859|IGI  go_process xanthine transport|GO:0042906|16738859|IGI  go_function allantoin uptake transmembrane transporter activity|GO:0005274|16738859|IDA  go_function uracil transmembrane transporter activity|GO:0015210|16738859|IDA  go_function xanthine transmembrane transporter activity|GO:0042907|16738859|IDA  product ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5); allantoin uptake transmembrane transporter/ uracil transmembrane transporter/ xanthine transmembrane transporter  note ARABIDOPSIS THALIANA UREIDE PERMEASE 5 (ATUPS5); FUNCTIONS IN: xanthine transmembrane transporter activity, uracil transmembrane transporter activity, allantoin uptake transmembrane transporter activity; INVOLVED IN: xanthine transport, uracil transport, allantoin transport; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (TAIR:AT2G03590.1); Has 138 Blast hits to 132 proteins in 27 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G26440.2p  transcript_id AT1G26440.2  protein_id AT1G26440.2p  transcript_id AT1G26440.2  
At1g26440	chr1:009144109	0.0	C/9144109-9144273,9144362-9144736,9144827-9144921,9144995-9145340,9145413-9145673	AT1G26440.3 CDS  gene_syn ARABIDOPSIS THALIANA UREIDE PERMEASE 5, ATUPS5, T1K7.19, T1K7_19, UPS5  gene ATUPS5  function uptake assays in yeast mutants indicated this splice variant is a cellular importer for allantoin, uracil and xanthine  go_component endomembrane system|GO:0012505||IEA  go_process allantoin transport|GO:0015720|16738859|IGI  go_process uracil transport|GO:0015857|16738859|IGI  go_process xanthine transport|GO:0042906|16738859|IGI  go_function allantoin uptake transmembrane transporter activity|GO:0005274|16738859|IDA  go_function uracil transmembrane transporter activity|GO:0015210|16738859|IDA  go_function xanthine transmembrane transporter activity|GO:0042907|16738859|IDA  product ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5); allantoin uptake transmembrane transporter/ uracil transmembrane transporter/ xanthine transmembrane transporter  note ARABIDOPSIS THALIANA UREIDE PERMEASE 5 (ATUPS5); FUNCTIONS IN: xanthine transmembrane transporter activity, uracil transmembrane transporter activity, allantoin uptake transmembrane transporter activity; INVOLVED IN: xanthine transport, uracil transport, allantoin transport; LOCATED IN: endomembrane system; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid elongase 3-ketoacyl-CoA synthase 1 (InterPro:IPR009834); BEST Arabidopsis thaliana protein match is: ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1); allantoin uptake transmembrane transporter (TAIR:AT2G03590.1); Has 138 Blast hits to 132 proteins in 27 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G26440.3p  transcript_id AT1G26440.3  protein_id AT1G26440.3p  transcript_id AT1G26440.3  
At1g26450	chr1:009149003	0.0	C/9149003-9149276,9149525-9149552,9149643-9149882,9150012-9150063	AT1G26450.1 CDS  gene_syn T1K7.18, T1K7_18  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product beta-1,3-glucanase-related  note beta-1,3-glucanase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4); callose binding / polysaccharide binding (TAIR:AT1G69295.1); Has 10543 Blast hits to 2817 proteins in 330 species: Archae - 10; Bacteria - 555; Metazoa - 2513; Fungi - 887; Plants - 692; Viruses - 195; Other Eukaryotes - 5691 (source: NCBI BLink).  protein_id AT1G26450.1p  transcript_id AT1G26450.1  protein_id AT1G26450.1p  transcript_id AT1G26450.1  
At1g26460	chr1:009151816	0.0	W/9151816-9152462,9152671-9152893,9152982-9153464,9153694-9153900,9153990-9154127,9154213-9154407	AT1G26460.1 CDS  gene_syn T1K7.17, T1K7_17  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: MEE40 (maternal effect embryo arrest 40) (TAIR:AT3G53700.1); Has 4278 Blast hits to 2050 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 59; Plants - 4056; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).  protein_id AT1G26460.1p  transcript_id AT1G26460.1  protein_id AT1G26460.1p  transcript_id AT1G26460.1  
At1g26470	chr1:009155134	0.0	W/9155134-9155253,9155340-9155412,9155605-9155656,9155755-9155824,9155950-9156036	AT1G26470.1 CDS  gene_syn T1K7.16, T1K7_16  go_component nucleus|GO:0005634||IEA  go_component H4/H2A histone acetyltransferase complex|GO:0043189||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 39 Blast hits to 39 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 24; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26470.1p  transcript_id AT1G26470.1  protein_id AT1G26470.1p  transcript_id AT1G26470.1  
At1g26480	chr1:009156573	0.0	C/9156573-9156578,9156659-9156723,9156803-9156951,9157035-9157144,9157221-9157308,9157383-9157689,9157764-9157845	AT1G26480.1 CDS  gene_syn GENERAL REGULATORY FACTOR 12, GF14 IOTA, GRF12, T1K7.15, T1K7_15  gene GRF12  function 14-3-3 protein GF14iota (grf12)  go_component cellular_component|GO:0005575||ND  go_function protein binding|GO:0005515||NAS  go_function protein phosphorylated amino acid binding|GO:0045309|10631267|TAS  product GRF12 (GENERAL REGULATORY FACTOR 12); protein binding / protein phosphorylated amino acid binding  note GENERAL REGULATORY FACTOR 12 (GRF12); FUNCTIONS IN: protein phosphorylated amino acid binding, protein binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GRF9 (GENERAL REGULATORY FACTOR 9); calcium ion binding / protein binding / protein phosphorylated amino acid binding (TAIR:AT2G42590.3); Has 2106 Blast hits to 2097 proteins in 295 species: Archae - 0; Bacteria - 2; Metazoa - 1030; Fungi - 230; Plants - 541; Viruses - 0; Other Eukaryotes - 303 (source: NCBI BLink).  protein_id AT1G26480.1p  transcript_id AT1G26480.1  protein_id AT1G26480.1p  transcript_id AT1G26480.1  
At1g26490	chr1:009158183	0.0	W/9158183-9158255	AT1G26490.1 tRNA  gene_syn 51948.TRNA-ALA-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ala (anticodon: TGC)  transcript_id AT1G26490.1  
At1g26500	chr1:009158380	0.0	W/9158380-9159897	AT1G26500.1 CDS  gene_syn T1K7.14, T1K7_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G62470.1); Has 8618 Blast hits to 3430 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 74; Plants - 8411; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).  protein_id AT1G26500.1p  transcript_id AT1G26500.1  protein_id AT1G26500.1p  transcript_id AT1G26500.1  
At1g26510	chr1:009159906	0.0	C/9159906-9159937,9160024-9161053,9161554-9161606,9161890-9162099,9162175-9162910	AT1G26510.1 CDS  gene_syn T1K7.13, T1K7_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15660.1); Has 976 Blast hits to 559 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 976; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26510.1p  transcript_id AT1G26510.1  protein_id AT1G26510.1p  transcript_id AT1G26510.1  
At1g26520	chr1:009163448	0.0	C/9163448-9163503,9163586-9163667,9163748-9163858,9163945-9164064,9164161-9164322,9164405-9164494,9164769-9164883,9165125-9165342,9165424-9165594	AT1G26520.1 CDS  gene_syn T1K7.11, T1K7_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor L, putative (TAIR:AT1G15730.1); Has 5407 Blast hits to 5334 proteins in 932 species: Archae - 52; Bacteria - 3259; Metazoa - 131; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 1659 (source: NCBI BLink).  protein_id AT1G26520.1p  transcript_id AT1G26520.1  protein_id AT1G26520.1p  transcript_id AT1G26520.1  
At1g26530	chr1:009165890	0.0	W/9165890-9165960,9166030-9166089,9166194-9166299,9166476-9166516,9166601-9166621,9166763-9166850,9166965-9167021,9167107-9167185,9167285-9167298	AT1G26530.1 CDS  gene_syn T1K7.10, T1K7_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46230.1); Has 345 Blast hits to 345 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 99; Plants - 37; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G26530.1p  transcript_id AT1G26530.1  protein_id AT1G26530.1p  transcript_id AT1G26530.1  
At1g26540	chr1:009167783	0.0	C/9167783-9168435,9168559-9168666,9168755-9168836,9168937-9169064,9169161-9169248,9169330-9169494,9169578-9170000,9170355-9170795	AT1G26540.1 CDS  gene_syn T1K7.9, T1K7_9  go_component vacuole|GO:0005773|15539469|IDA  go_function RNA binding|GO:0003723||IEA  go_process biological_process|GO:0008150||ND  product agenet domain-containing protein  note agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT2G47230.1); Has 651 Blast hits to 562 proteins in 98 species: Archae - 0; Bacteria - 24; Metazoa - 210; Fungi - 27; Plants - 225; Viruses - 3; Other Eukaryotes - 162 (source: NCBI BLink).  protein_id AT1G26540.1p  transcript_id AT1G26540.1  protein_id AT1G26540.1p  transcript_id AT1G26540.1  
At1g26550	chr1:009171800	0.0	W/9171800-9171932,9172081-9172190,9172441-9172583,9172674-9172716	AT1G26550.1 CDS  gene_syn T1K7.8, T1K7_8  go_function isomerase activity|GO:0016853||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function isomerase activity|GO:0016853||ISS  product peptidyl-prolyl cis-trans isomerase PPIC-type family protein  note peptidyl-prolyl cis-trans isomerase PPIC-type family protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1); peptidyl-prolyl cis-trans isomerase (TAIR:AT2G18040.1); Has 4470 Blast hits to 4300 proteins in 976 species: Archae - 12; Bacteria - 3095; Metazoa - 206; Fungi - 127; Plants - 110; Viruses - 0; Other Eukaryotes - 920 (source: NCBI BLink).  protein_id AT1G26550.1p  transcript_id AT1G26550.1  protein_id AT1G26550.1p  transcript_id AT1G26550.1  
At1g26558	chr1:009175611	0.0	W/9175611-9177556	AT1G26558.1 ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26558.1  
At1g26558	chr1:009175642	0.0	W/9175642-9177598	AT1G26558.2 ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G26558.2  
At1g26560	chr1:009178513	0.0	W/9178513-9178665,9179410-9179535,9179636-9179711,9179838-9179909,9180083-9180170,9180278-9180533,9180613-9180728,9180811-9181034,9181121-9181152,9181260-9181362,9181440-9181726	AT1G26560.1 CDS  gene_syn BETA GLUCOSIDASE 40, BGLU40, T1K7.7, T1K7_7  gene BGLU40  go_component chloroplast|GO:0009507|15028209|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product BGLU40 (BETA GLUCOSIDASE 40); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds  note BETA GLUCOSIDASE 40 (BGLU40); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGLU41 (BETA GLUCOSIDASE 41); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (TAIR:AT5G54570.1); Has 5807 Blast hits to 5536 proteins in 798 species: Archae - 100; Bacteria - 3154; Metazoa - 606; Fungi - 133; Plants - 859; Viruses - 0; Other Eukaryotes - 955 (source: NCBI BLink).  protein_id AT1G26560.1p  transcript_id AT1G26560.1  protein_id AT1G26560.1p  transcript_id AT1G26560.1  
At1g26570	chr1:009182801	0.0	W/9182801-9184246	AT1G26570.1 CDS  gene_syn ATUGD1, T1K7.6, T1K7_6, UDP-GLUCOSE DEHYDROGENASE 1, UGD1  gene UGD1  go_component endomembrane system|GO:0012505||IEA  go_process metabolic process|GO:0008152||IEA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|GO:0016616||IEA  go_function coenzyme binding|GO:0050662||IEA  go_function NAD or NADH binding|GO:0051287||IEA  go_function UDP-glucose 6-dehydrogenase activity|GO:0003979||ISS  product UGD1 (UDP-GLUCOSE DEHYDROGENASE 1); NAD or NADH binding / UDP-glucose 6-dehydrogenase/ binding / catalytic/ coenzyme binding / oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor  note UDP-GLUCOSE DEHYDROGENASE 1 (UGD1); FUNCTIONS IN: in 7 functions; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase, putative (TAIR:AT3G29360.2); Has 10075 Blast hits to 10057 proteins in 1239 species: Archae - 198; Bacteria - 3905; Metazoa - 183; Fungi - 77; Plants - 116; Viruses - 14; Other Eukaryotes - 5582 (source: NCBI BLink).  protein_id AT1G26570.1p  transcript_id AT1G26570.1  protein_id AT1G26570.1p  transcript_id AT1G26570.1  
At1g26580	chr1:009185620	0.0	W/9185620-9185764,9185877-9187213	AT1G26580.1 CDS  gene_syn T1K7.5, T1K7_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myb family transcription factor / ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26580.1p  transcript_id AT1G26580.1  protein_id AT1G26580.1p  transcript_id AT1G26580.1  
At1g26590	chr1:009189624	0.0	W/9189624-9190709	AT1G26590.1 CDS  gene_syn T1K7.4, T1K7_4  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT1G26610.1); Has 9189 Blast hits to 5606 proteins in 176 species: Archae - 0; Bacteria - 202; Metazoa - 7781; Fungi - 146; Plants - 320; Viruses - 3; Other Eukaryotes - 737 (source: NCBI BLink).  protein_id AT1G26590.1p  transcript_id AT1G26590.1  protein_id AT1G26590.1p  transcript_id AT1G26590.1  
At1g26600	chr1:009191684	0.0	W/9191684-9192046	AT1G26600.1 CDS  gene_syn CLAVATA3/ESR-RELATED 9, CLE9, T1K7.3, T1K7_3  gene CLE9  function Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo.  go_component apoplast|GO:0048046|11457943|RCA  go_process signal transduction|GO:0007165||ISS  go_function receptor binding|GO:0005102||ISS  go_function protein binding|GO:0005515|11457943|ISS  product CLE9 (CLAVATA3/ESR-RELATED 9); protein binding / receptor binding  note CLAVATA3/ESR-RELATED 9 (CLE9); FUNCTIONS IN: protein binding, receptor binding; INVOLVED IN: signal transduction; LOCATED IN: apoplast; EXPRESSED IN: leaf lamina base, sepal, flower, petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: CLE10 (CLAVATA3/ESR-RELATED 10); protein binding / receptor binding (TAIR:AT1G69320.1); Has 29 Blast hits to 29 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26600.1p  transcript_id AT1G26600.1  protein_id AT1G26600.1p  transcript_id AT1G26600.1  
At1g26610	chr1:009193735	0.0	W/9193735-9195102	AT1G26610.1 CDS  gene_syn T1K7.2, T1K7_2  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C2H2 type) family protein  note zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT1G26590.1); Has 1803 Blast hits to 1532 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 1356; Fungi - 6; Plants - 361; Viruses - 6; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G26610.1p  transcript_id AT1G26610.1  protein_id AT1G26610.1p  transcript_id AT1G26610.1  
At1g26620	chr1:009195838	0.0	C/9195838-9197756,9197953-9198541,9198624-9198719	AT1G26620.1 CDS  gene_syn T1K7.1, T1K7_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69360.1); Has 154 Blast hits to 137 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G26620.1p  transcript_id AT1G26620.1  protein_id AT1G26620.1p  transcript_id AT1G26620.1  
At1g26630	chr1:009205968	0.0	W/9205968-9206087,9206452-9206574,9206672-9206728,9206817-9206891,9206972-9207013	AT1G26630.2 CDS  gene_syn ATELF5A-2, ELF5A-2, EUKARYOTIC ELONGATION FACTOR 5A-2, FBR12, FUMONISIN B1-RESISTANT12, T24P13.1, T24P13_1  gene FBR12  function Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection.  go_function translation initiation factor activity|GO:0003743||IEA  go_component nucleus|GO:0005634|18633122|IDA  go_process translational initiation|GO:0006413||ISS  go_process response to wounding|GO:0009611|18633122|IEP  go_process programmed cell death|GO:0012501|18633122|IMP  go_process defense response to bacterium|GO:0042742|18633122|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor  note FUMONISIN B1-RESISTANT12 (FBR12); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: defense response to bacterium, translational initiation, response to wounding, programmed cell death; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation protein SH3-like, subgroup (InterPro:IPR014722), Eukaryotic initiation factor 5A hypusine (eIF-5A) (InterPro:IPR001884); BEST Arabidopsis thaliana protein match is: ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor (TAIR:AT1G69410.1); Has 970 Blast hits to 968 proteins in 295 species: Archae - 160; Bacteria - 0; Metazoa - 291; Fungi - 145; Plants - 194; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT1G26630.2p  transcript_id AT1G26630.2  protein_id AT1G26630.2p  transcript_id AT1G26630.2  
At1g26630	chr1:009205968	0.0	W/9205968-9206087,9206452-9206574,9206672-9206728,9206817-9206891,9206994-9207098	AT1G26630.1 CDS  gene_syn ATELF5A-2, ELF5A-2, EUKARYOTIC ELONGATION FACTOR 5A-2, FBR12, FUMONISIN B1-RESISTANT12, T24P13.1, T24P13_1  gene FBR12  function Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection.  go_process response to wounding|GO:0009611|18633122|IEP  go_process response to bacterium|GO:0009617|18633122|IEP  go_process host programmed cell death induced by symbiont|GO:0034050|18633122|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function translation initiation factor activity|GO:0003743||IEA  go_component nucleus|GO:0005634|18633122|IDA  go_process translational initiation|GO:0006413||ISS  go_process programmed cell death|GO:0012501|18633122|IMP  go_process defense response to bacterium|GO:0042742|18633122|IMP  go_function translation initiation factor activity|GO:0003743||ISS  product FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor  note FUMONISIN B1-RESISTANT12 (FBR12); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation protein SH3-like, subgroup (InterPro:IPR014722), Eukaryotic initiation factor 5A hypusine (eIF-5A) (InterPro:IPR001884); BEST Arabidopsis thaliana protein match is: ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor (TAIR:AT1G69410.1); Has 987 Blast hits to 985 proteins in 296 species: Archae - 160; Bacteria - 0; Metazoa - 294; Fungi - 157; Plants - 196; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).  protein_id AT1G26630.1p  transcript_id AT1G26630.1  protein_id AT1G26630.1p  transcript_id AT1G26630.1  
At1g26640	chr1:009207620	0.0	C/9207620-9207715,9207817-9207920,9208017-9208079,9208154-9208226,9208321-9208398,9208485-9208520,9208609-9208665,9208750-9208811,9208896-9208938,9209019-9209116,9209274-9209504,9209709-9209766	AT1G26640.1 CDS  gene_syn T24P13.2, T24P13_2  go_process amino acid biosynthetic process|GO:0008652||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product aspartate/glutamate/uridylate kinase family protein  note aspartate/glutamate/uridylate kinase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: amino acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048); Has 393 Blast hits to 393 proteins in 151 species: Archae - 114; Bacteria - 162; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G26640.1p  transcript_id AT1G26640.1  protein_id AT1G26640.1p  transcript_id AT1G26640.1  
At1g26650	chr1:009210335	0.0	W/9210335-9211342	AT1G26650.1 CDS  gene_syn T24P13.3, T24P13_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69430.1); Has 108 Blast hits to 107 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26650.1p  transcript_id AT1G26650.1  protein_id AT1G26650.1p  transcript_id AT1G26650.1  
At1g26660	chr1:009212298	0.0	W/9212298-9212389,9212546-9212575,9212841-9212942,9213220-9213327,9213482-9213536,9213694-9213765	AT1G26660.1 CDS  gene_syn T24P13.26  go_component prefoldin complex|GO:0016272||IEA  go_process protein folding|GO:0006457||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component prefoldin complex|GO:0016272||ISS  go_process protein folding|GO:0006457||ISS  product c-myc binding protein, putative / prefoldin, putative  note c-myc binding protein, putative / prefoldin, putative; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053); Has 263 Blast hits to 263 proteins in 87 species: Archae - 12; Bacteria - 2; Metazoa - 174; Fungi - 30; Plants - 21; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G26660.1p  transcript_id AT1G26660.1  protein_id AT1G26660.1p  transcript_id AT1G26660.1  
At1g26665	chr1:009214510	0.0	W/9214510-9214733,9214823-9214903,9214991-9215093,9215177-9215266,9215355-9215426	AT1G26665.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: RNA polymerase II mediator complex protein-related (TAIR:AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26665.1p  transcript_id AT1G26665.1  protein_id AT1G26665.1p  transcript_id AT1G26665.1  
At1g26665	chr1:009214510	0.0	W/9214510-9214733,9214823-9214903,9214991-9215093,9215177-9215270,9215359-9215426	AT1G26665.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: RNA polymerase II mediator complex protein-related (TAIR:AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26665.2p  transcript_id AT1G26665.2  protein_id AT1G26665.2p  transcript_id AT1G26665.2  
At1g26670	chr1:009216103	0.0	W/9216103-9216199,9216860-9216918,9217008-9217196,9217373-9217543,9217641-9217793	AT1G26670.1 CDS  gene_syn ATVTI12, T24P13.5, T24P13_5, VESICAL TRANSPORT V-SNARE 12, VTI12, VTI1B  gene VTI1B  function member of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles.  go_component late endosome|GO:0005770|11115874|TAS  go_component trans-Golgi network|GO:0005802|11115874|TAS  go_component plasma membrane|GO:0005886|15797025|IDA  go_process protein targeting to vacuole|GO:0006623|17360696|IMP  go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS  go_process membrane fusion|GO:0006944|10831610|IPI  go_process intracellular transport|GO:0046907|15797025|TAS  go_function SNARE binding|GO:0000149|11115874|TAS  go_function receptor activity|GO:0004872|11115874|TAS  go_function soluble NSF attachment protein activity|GO:0005483|15797025|TAS  product VTI1B; SNARE binding / receptor/ soluble NSF attachment protein  note VTI1B; FUNCTIONS IN: soluble NSF attachment protein activity, SNARE binding, receptor activity; INVOLVED IN: membrane fusion, intracellular transport, intra-Golgi vesicle-mediated transport, protein targeting to vacuole; LOCATED IN: trans-Golgi network, late endosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport v-SNARE (InterPro:IPR007705); BEST Arabidopsis thaliana protein match is: SGR4 (SHOOT GRAVITROPSIM 4); receptor (TAIR:AT5G39510.1); Has 598 Blast hits to 596 proteins in 150 species: Archae - 2; Bacteria - 9; Metazoa - 249; Fungi - 94; Plants - 112; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).  protein_id AT1G26670.1p  transcript_id AT1G26670.1  protein_id AT1G26670.1p  transcript_id AT1G26670.1  
At1g26680	chr1:009219552	0.0	W/9219552-9219632,9219713-9220019,9220092-9220207,9220294-9220635,9220740-9221127,9221209-9221327,9221505-9221925,9222007-9222125,9222205-9222537,9222657-9223193	AT1G26680.1 CDS  gene_syn T24P13.6, T24P13_6  go_component chloroplast|GO:0009507|18431481|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700||ISS  product transcriptional factor B3 family protein  note transcriptional factor B3 family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT2G24650.2); Has 360 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 344; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G26680.1p  transcript_id AT1G26680.1  protein_id AT1G26680.1p  transcript_id AT1G26680.1  
At1g26690	chr1:009224299	0.0	C/9224299-9224443,9224570-9224646,9225180-9225389,9225470-9225682	AT1G26690.1 CDS  gene_syn T24P13.7, T24P13_7  go_component endomembrane system|GO:0012505||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_component membrane|GO:0016020||ISS  go_process intracellular protein transport|GO:0006886||ISS  go_function protein transmembrane transporter activity|GO:0008320||ISS  product emp24/gp25L/p24 family protein  note emp24/gp25L/p24 family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family protein (TAIR:AT1G69460.1); Has 1128 Blast hits to 1126 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 565; Fungi - 312; Plants - 129; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G26690.1p  transcript_id AT1G26690.1  protein_id AT1G26690.1p  transcript_id AT1G26690.1  
At1g26700	chr1:009228300	0.0	W/9228300-9228428,9228624-9228681,9228776-9229014,9229138-9229254,9229437-9229497,9229754-9229848,9230051-9230125,9230517-9230602,9230815-9230864,9230984-9231024,9231136-9231306,9231395-9231430,9231552-9231619,9231704-9231764,9231860-9232237	AT1G26700.1 CDS  gene_syn ATMLO14, MILDEW RESISTANCE LOCUS O 14, MLO14, T24P13.8, T24P13_8  gene MLO14  function A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).  go_component integral to membrane|GO:0016021||IEA  go_process cell death|GO:0008219||IEA  go_component plasma membrane|GO:0005886||ISS  go_process defense response|GO:0006952||ISS  go_process cell death|GO:0008219||ISS  go_function calmodulin binding|GO:0005516||ISS  product MLO14 (MILDEW RESISTANCE LOCUS O 14); calmodulin binding  note MILDEW RESISTANCE LOCUS O 14 (MLO14); FUNCTIONS IN: calmodulin binding; INVOLVED IN: cell death, defense response; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, LP.10 ten leaves visible, 4 leaf senescence stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: MLO11 (MILDEW RESISTANCE LOCUS O 11); calmodulin binding (TAIR:AT5G53760.2); Has 292 Blast hits to 286 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 286; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26700.1p  transcript_id AT1G26700.1  protein_id AT1G26700.1p  transcript_id AT1G26700.1  
At1g26710	chr1:009232620	0.0	C/9232620-9233126	AT1G26710.1 CDS  gene_syn T24P13.9, T24P13_9  go_component mitochondrion|GO:0005739|14671022|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26720.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26710.1p  transcript_id AT1G26710.1  protein_id AT1G26710.1p  transcript_id AT1G26710.1  
At1g26720	chr1:009234303	0.0	C/9234303-9234812	AT1G26720.1 CDS  gene_syn T24P13.10, T24P13_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26710.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26720.1p  transcript_id AT1G26720.1  protein_id AT1G26720.1p  transcript_id AT1G26720.1  
At1g26730	chr1:009241435	0.0	W/9241435-9241963,9242044-9242323,9242412-9242460,9242546-9242617,9242705-9242834,9242931-9243051,9243147-9243405,9243495-9243599,9243681-9243725,9243813-9244238,9244326-9244462,9244551-9244650	AT1G26730.1 CDS  gene_syn T24P13.11, T24P13_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_component integral to membrane|GO:0016021||ISS  product EXS family protein / ERD1/XPR1/SYG1 family protein  note EXS family protein / ERD1/XPR1/SYG1 family protein; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35350.1); Has 740 Blast hits to 718 proteins in 148 species: Archae - 0; Bacteria - 4; Metazoa - 233; Fungi - 274; Plants - 129; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT1G26730.1p  transcript_id AT1G26730.1  protein_id AT1G26730.1p  transcript_id AT1G26730.1  
At1g26740	chr1:009245280	0.0	C/9245280-9245349,9245811-9245884,9246295-9246555	AT1G26740.1 CDS  gene_syn T24P13.27  go_component large ribosomal subunit|GO:0015934||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product structural constituent of ribosome  note structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32p (InterPro:IPR002677); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT1G69485.1); Has 76 Blast hits to 76 proteins in 26 species: Archae - 0; Bacteria - 21; Metazoa - 0; Fungi - 12; Plants - 31; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G26740.1p  transcript_id AT1G26740.1  protein_id AT1G26740.1p  transcript_id AT1G26740.1  
At1g26750	chr1:009246857	0.0	W/9246857-9246951,9247163-9247285,9247537-9247639,9247787-9248053	AT1G26750.1 CDS  gene_syn T24P13.13, T24P13_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26750.1p  transcript_id AT1G26750.1  protein_id AT1G26750.1p  transcript_id AT1G26750.1  
At1g26760	chr1:009248304	0.0	C/9248304-9249941	AT1G26760.1 CDS  gene_syn ATXR1, SDG35, SET DOMAIN PROTEIN 35, T24P13.14, T24P13_14  gene SDG35  go_function binding|GO:0005488||IEA  go_process biological_process|GO:0008150||ND  product SDG35 (SET DOMAIN PROTEIN 35); binding  note SET DOMAIN PROTEIN 35 (SDG35); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SET (InterPro:IPR001214), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: ASHR2 (ASH1-RELATED PROTEIN 2) (TAIR:AT2G19640.2); Has 1784 Blast hits to 1769 proteins in 244 species: Archae - 8; Bacteria - 133; Metazoa - 759; Fungi - 365; Plants - 218; Viruses - 3; Other Eukaryotes - 298 (source: NCBI BLink).  protein_id AT1G26760.1p  transcript_id AT1G26760.1  protein_id AT1G26760.1p  transcript_id AT1G26760.1  
At1g26761	chr1:009250269	0.0	C/9250269-9251603	AT1G26761.1 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 197 Blast hits to 129 proteins in 53 species: Archae - 0; Bacteria - 148; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G26761.1p  transcript_id AT1G26761.1  protein_id AT1G26761.1p  transcript_id AT1G26761.1  
At1g26762	chr1:009253729	0.0	W/9253729-9254142	AT1G26762.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26270.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26762.1p  transcript_id AT1G26762.1  protein_id AT1G26762.1p  transcript_id AT1G26762.1  
At1g26770	chr1:009259775	0.0	W/9259775-9259934,9260011-9260323,9260486-9260792	AT1G26770.2 CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN 10, ARABIDOPSIS THALIANA EXPANSIN A 10, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, AT-EXP10, ATEXP10, ATEXPA10, ATHEXP ALPHA 1.1, EXP10, EXPANSIN 10, T24P13.15, T24P13_15  gene ATEXPA10  function Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component plant-type cell wall|GO:0009505|10931949|TAS  go_process syncytium formation|GO:0006949|16942607|IEP  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|10931949|IMP  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  go_function structural constituent of cell wall|GO:0005199|10931949|TAS  product ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall  note ARABIDOPSIS THALIANA EXPANSIN A 10 (ATEXPA10); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: syncytium formation, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) (TAIR:AT1G69530.2); Has 1460 Blast hits to 1459 proteins in 135 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 41; Plants - 1377; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G26770.2p  transcript_id AT1G26770.2  protein_id AT1G26770.2p  transcript_id AT1G26770.2  
At1g26770	chr1:009259805	0.0	W/9259805-9259934,9260011-9260323,9260486-9260792	AT1G26770.1 CDS  gene_syn ARABIDOPSIS THALIANA EXPANSIN 10, ARABIDOPSIS THALIANA EXPANSIN A 10, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, AT-EXP10, ATEXP10, ATEXPA10, ATHEXP ALPHA 1.1, EXP10, EXPANSIN 10, T24P13.15, T24P13_15  gene ATEXPA10  function Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.  go_component plant-type cell wall|GO:0009505|10931949|TAS  go_process syncytium formation|GO:0006949|16942607|IEP  go_process unidimensional cell growth|GO:0009826|11641069|NAS  go_process unidimensional cell growth|GO:0009826||ISS  go_process plant-type cell wall loosening|GO:0009828|10931949|IMP  go_process plant-type cell wall loosening|GO:0009828|11641069|NAS  go_process plant-type cell wall loosening|GO:0009828||ISS  go_process plant-type cell wall modification during multidimensional cell growth|GO:0009831||ISS  go_function structural constituent of cell wall|GO:0005199|10931949|TAS  product ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10); structural constituent of cell wall  note ARABIDOPSIS THALIANA EXPANSIN A 10 (ATEXPA10); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: syncytium formation, plant-type cell wall modification during multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) (TAIR:AT1G69530.2); Has 1460 Blast hits to 1459 proteins in 135 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 41; Plants - 1377; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G26770.1p  transcript_id AT1G26770.1  protein_id AT1G26770.1p  transcript_id AT1G26770.1  
At1g26771	chr1:009263169	0.0	C/9263169-9263273	AT1G26771.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G26771.1p  transcript_id AT1G26771.1  protein_id AT1G26771.1p  transcript_id AT1G26771.1  
At1g26773	chr1:009264404	0.0	W/9264404-9264580	AT1G26773.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G26773.1p  transcript_id AT1G26773.1  protein_id AT1G26773.1p  transcript_id AT1G26773.1  
At1g26780	chr1:009271033	0.0	W/9271033-9271429,9271683-9272117,9272216-9272463	AT1G26780.2 CDS  gene_syn AtMYB117, MYB117, T24P13.16, T24P13_16, myb domain protein 117  gene MYB117  function putative transcription factor (MYB117)  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor (MYB117)  note myb domain protein 117 (MYB117); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB105 (myb domain protein 105); DNA binding / transcription factor (TAIR:AT1G69560.1).  protein_id AT1G26780.2p  transcript_id AT1G26780.2  protein_id AT1G26780.2p  transcript_id AT1G26780.2  
At1g26780	chr1:009271033	0.0	W/9271033-9271429,9271683-9272128	AT1G26780.1 CDS  gene_syn AtMYB117, MYB117, T24P13.16, T24P13_16, myb domain protein 117  gene MYB117  function putative transcription factor (MYB117)  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product myb family transcription factor (MYB117)  note myb domain protein 117 (MYB117); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-type HTH DNA-binding domain (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB105 (myb domain protein 105); DNA binding / transcription factor (TAIR:AT1G69560.1); Has 6227 Blast hits to 5568 proteins in 370 species: Archae - 0; Bacteria - 0; Metazoa - 724; Fungi - 370; Plants - 3365; Viruses - 5; Other Eukaryotes - 1763 (source: NCBI BLink).  protein_id AT1G26780.1p  transcript_id AT1G26780.1  protein_id AT1G26780.1p  transcript_id AT1G26780.1  
At1g26790	chr1:009273857	0.0	C/9273857-9274810,9274940-9275092,9275229-9275312	AT1G26790.1 CDS  gene_syn T24P13.17, T24P13_17  go_component endomembrane system|GO:0012505||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT1G69570.1); Has 675 Blast hits to 658 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 618; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G26790.1p  transcript_id AT1G26790.1  protein_id AT1G26790.1p  transcript_id AT1G26790.1  
At1g26795	chr1:009276419	0.0	W/9276419-9276874	AT1G26795.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26796.1); Has 73 Blast hits to 69 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26795.1p  transcript_id AT1G26795.1  protein_id AT1G26795.1p  transcript_id AT1G26795.1  
At1g26796	chr1:009278958	0.0	W/9278958-9279413	AT1G26796.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT1G26795.1); Has 71 Blast hits to 67 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26796.1p  transcript_id AT1G26796.1  protein_id AT1G26796.1p  transcript_id AT1G26796.1  
At1g26797	chr1:009280986	0.0	W/9280986-9281408	AT1G26797.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product self-incompatibility protein-related  note self-incompatibility protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT1G26798.1); Has 66 Blast hits to 62 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26797.1p  transcript_id AT1G26797.1  protein_id AT1G26797.1p  transcript_id AT1G26797.1  
At1g26798	chr1:009281800	0.0	W/9281800-9282255	AT1G26798.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product Expressed protein  note Expressed protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: self-incompatibility protein-related (TAIR:AT1G26797.1); Has 74 Blast hits to 70 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26798.1p  transcript_id AT1G26798.1  protein_id AT1G26798.1p  transcript_id AT1G26798.1  
At1g26799	chr1:009283925	0.0	W/9283925-9284380	AT1G26799.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26796.1); Has 67 Blast hits to 63 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26799.1p  transcript_id AT1G26799.1  protein_id AT1G26799.1p  transcript_id AT1G26799.1  
At1g26800	chr1:009285576	0.0	C/9285576-9286190	AT1G26800.1 CDS  gene_syn T24P13.19, T24P13_19  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (C3HC4-type RING finger) family protein  note zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G14200.1); Has 6695 Blast hits to 6676 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 548; Plants - 2751; Viruses - 14; Other Eukaryotes - 1041 (source: NCBI BLink).  protein_id AT1G26800.1p  transcript_id AT1G26800.1  protein_id AT1G26800.1p  transcript_id AT1G26800.1  
At1g26810	chr1:009286862	0.0	C/9286862-9287074,9287165-9287272,9287354-9287533,9287625-9287753,9287842-9288123,9288217-9288452,9288544-9289327	AT1G26810.1 CDS  gene_syn GALACTOSYLTRANSFERASE1, GALT1, T24P13.20, T24P13_20  gene GALT1  function Encodes a protein with & 946;1,3-galactosyltransferase activity involved in the biosynthesis of the Lewis a epitope of certain glycoproteins.  go_component Golgi apparatus|GO:0005794|17630273|IDA  go_process Lewis a epitope biosynthetic process|GO:0010493|17630273|IMP  go_function UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity|GO:0010488|17630273|IDA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product GALT1 (GALACTOSYLTRANSFERASE1); UDP-galactose:N-glycan beta-1,3-galactosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups  note GALACTOSYLTRANSFERASE1 (GALT1); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups, UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity; INVOLVED IN: Lewis a epitope biosynthetic process; LOCATED IN: Golgi apparatus; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT3G06440.1); Has 1743 Blast hits to 1733 proteins in 89 species: Archae - 0; Bacteria - 2; Metazoa - 1407; Fungi - 3; Plants - 305; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).  protein_id AT1G26810.1p  transcript_id AT1G26810.1  protein_id AT1G26810.1p  transcript_id AT1G26810.1  
At1g26815	chr1:009290874	0.0	C/9290874-9291194	AT1G26815.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22000.1).  protein_id AT1G26815.1p  transcript_id AT1G26815.1  protein_id AT1G26815.1p  transcript_id AT1G26815.1  
At1g26820	chr1:009292760	0.0	C/9292760-9292983,9293084-9293282,9293394-9293549,9293633-9293722	AT1G26820.1 CDS  gene_syn RIBONUCLEASE 3, RNS3, T24P13.23  gene RNS3  function Encodes ribonuclease RNS3.  go_component endomembrane system|GO:0012505||IEA  go_function RNA binding|GO:0003723||IEA  go_function ribonuclease T2 activity|GO:0033897||IEA  go_process aging|GO:0007568|8000425|IEP  go_function endoribonuclease activity|GO:0004521||ISS  product RNS3 (RIBONUCLEASE 3); RNA binding / endoribonuclease/ ribonuclease T2  note RIBONUCLEASE 3 (RNS3); FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: aging; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 1995 Blast hits to 1994 proteins in 375 species: Archae - 0; Bacteria - 271; Metazoa - 145; Fungi - 170; Plants - 1317; Viruses - 7; Other Eukaryotes - 85 (source: NCBI BLink).  protein_id AT1G26820.1p  transcript_id AT1G26820.1  protein_id AT1G26820.1p  transcript_id AT1G26820.1  
At1g26830	chr1:009296063	0.0	W/9296063-9296223,9296337-9298374	AT1G26830.1 CDS  gene_syn ARABIDOPSIS THALIANA CULLIN 3, ARABIDOPSIS THALIANA CULLIN 3A, ATCUL3, ATCUL3A, CUL3, CUL3A, CULLIN 3, CULLIN 3A, T24P13.25  gene ATCUL3  function Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal.  go_component ubiquitin ligase complex|GO:0000151|11019805|TAS  go_component SCF ubiquitin ligase complex|GO:0019005|15659098|IPI  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process cell cycle|GO:0007049||ISS  go_process response to red or far red light|GO:0009639|15659098|IMP  go_process embryonic development ending in seed dormancy|GO:0009793|16045478|IGI  go_process positive regulation of flower development|GO:0009911|15659098|IMP  go_process endosperm development|GO:0009960|16045478|IGI  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function protein binding|GO:0005515|15618422|IPI  go_function protein binding|GO:0005515|15659098|IPI  go_function protein binding|GO:0005515|15749712|IPI  product ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3); protein binding / ubiquitin-protein ligase  note ARABIDOPSIS THALIANA CULLIN 3 (ATCUL3); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: in 6 processes; LOCATED IN: SCF ubiquitin ligase complex, ubiquitin ligase complex; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin, N-terminal region (InterPro:IPR001373), Cullin repeat-like (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: CUL3B (CULLIN 3B); protein binding / ubiquitin-protein ligase (TAIR:AT1G69670.1); Has 1727 Blast hits to 1703 proteins in 173 species: Archae - 0; Bacteria - 6; Metazoa - 880; Fungi - 292; Plants - 203; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT1G26830.1p  transcript_id AT1G26830.1  protein_id AT1G26830.1p  transcript_id AT1G26830.1  
At1g26840	chr1:009298822	0.0	W/9298822-9298941,9299036-9299082,9299182-9299286,9299387-9299467,9299566-9299677,9299758-9299820,9299907-9299994,9300139-9300203,9300329-9300425,9300527-9300603	AT1G26840.1 CDS  gene_syn ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, ATORC6, ORC6, ORIGIN RECOGNITION COMPLEX PROTEIN 6, ORIGIN RECOGNITION COMPLEX SUBUNIT 6, T2P11.3, T2P11_3  gene ORC6  function Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors.  go_function DNA binding|GO:0003677||IEA  go_component origin recognition complex|GO:0000808|16179646|ISS  go_process DNA replication|GO:0006260|16179646|ISS  product ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6); DNA binding  note ORIGIN RECOGNITION COMPLEX PROTEIN 6 (ORC6); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA replication; LOCATED IN: origin recognition complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Origin recognition complex subunit 6 (InterPro:IPR008721); Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G26840.1p  transcript_id AT1G26840.1  protein_id AT1G26840.1p  transcript_id AT1G26840.1  
At1g26850	chr1:009301146	0.0	C/9301146-9301371,9301462-9301539,9301631-9302020,9302104-9302398,9302491-9302701,9302782-9303432	AT1G26850.1 CDS  gene_syn T2P11.4, T2P11_4  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product dehydration-responsive family protein  note dehydration-responsive family protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT4G18030.1); Has 516 Blast hits to 509 proteins in 51 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 457; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26850.1p  transcript_id AT1G26850.1  protein_id AT1G26850.1p  transcript_id AT1G26850.1  
At1g26850	chr1:009301146	0.0	C/9301146-9301371,9301462-9301539,9301631-9302020,9302104-9302398,9302491-9302701,9302782-9303432	AT1G26850.2 CDS  gene_syn T2P11.4, T2P11_4  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product dehydration-responsive family protein  note dehydration-responsive family protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT4G18030.1); Has 516 Blast hits to 509 proteins in 51 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 457; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26850.2p  transcript_id AT1G26850.2  protein_id AT1G26850.2p  transcript_id AT1G26850.2  
At1g26850	chr1:009301357	0.0	C/9301357-9301371,9301672-9302020,9302104-9302398,9302491-9302701,9302782-9303432	AT1G26850.3 CDS  gene_syn T2P11.4, T2P11_4  go_component membrane|GO:0016020|17432890|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  product dehydration-responsive family protein  note dehydration-responsive family protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive family protein (TAIR:AT4G18030.1); Has 519 Blast hits to 503 proteins in 51 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 460; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G26850.3p  transcript_id AT1G26850.3  protein_id AT1G26850.3p  transcript_id AT1G26850.3  
At1g26860	chr1:009304982	0.0	C/9304982-9305800	AT1G26860.1 mRNA_TE_gene  pseudo  gene_syn T2P11.5, T2P11_5  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1); similar to hypothetical protein 27.t00122 [Brassica oleracea] (GB:ABD65056.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At1g26870	chr1:009312856	0.0	W/9312856-9312874,9313027-9313215,9313323-9313627,9314219-9314983	AT1G26870.1 CDS  gene_syn ANAC009, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 9, FEZ, T2P11.6, T2P11_6  gene FEZ  go_component nucleus|GO:0005634|19081078|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_process response to auxin stimulus|GO:0009733|19081078|IEP  go_process positive regulation of asymmetric cell division|GO:0045770|19081078|IMP  go_process somatic stem cell division|GO:0048103|19081078|IMP  go_process root cap development|GO:0048829|19081078|IMP  go_function transcription factor activity|GO:0003700|11118137|ISS  product FEZ (FEZ); transcription factor  note FEZ (FEZ); FUNCTIONS IN: transcription factor activity; INVOLVED IN: multicellular organismal development, response to auxin stimulus, root cap development, somatic stem cell division, positive regulation of asymmetric cell division; LOCATED IN: nucleus; EXPRESSED IN: lateral root cap, columella root cap initial cell, root, leaf; EXPRESSED DURING: 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: anac094 (Arabidopsis NAC domain containing protein 94); transcription factor (TAIR:AT5G39820.1); Has 1608 Blast hits to 1604 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1608; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26870.1p  transcript_id AT1G26870.1  protein_id AT1G26870.1p  transcript_id AT1G26870.1  
At1g26880	chr1:009315640	0.0	C/9315640-9315733,9315820-9315929,9316400-9316479,9316603-9316681	AT1G26880.1 CDS  gene_syn T2P11.7, T2P11_7  go_component nucleolus|GO:0005730|15496452|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L34 (RPL34A)  note 60S ribosomal protein L34 (RPL34A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, nucleolus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome (TAIR:AT1G69620.1); Has 600 Blast hits to 600 proteins in 236 species: Archae - 43; Bacteria - 0; Metazoa - 239; Fungi - 98; Plants - 100; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).  protein_id AT1G26880.1p  transcript_id AT1G26880.1  protein_id AT1G26880.1p  transcript_id AT1G26880.1  
At1g26880	chr1:009315798	0.0	C/9315798-9315929,9316400-9316479,9316603-9316681	AT1G26880.2 CDS  gene_syn T2P11.7, T2P11_7  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L34 (RPL34A)  note 60S ribosomal protein L34 (RPL34A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome (TAIR:AT1G69620.1); Has 577 Blast hits to 577 proteins in 230 species: Archae - 40; Bacteria - 0; Metazoa - 229; Fungi - 94; Plants - 100; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT1G26880.2p  transcript_id AT1G26880.2  protein_id AT1G26880.2p  transcript_id AT1G26880.2  
At1g26890	chr1:009317814	0.0	W/9317814-9318473,9318732-9318869,9319034-9319078	AT1G26890.1 CDS  gene_syn T2P11.8, T2P11_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22000.1); Has 1770 Blast hits to 1285 proteins in 123 species: Archae - 0; Bacteria - 115; Metazoa - 389; Fungi - 120; Plants - 411; Viruses - 91; Other Eukaryotes - 644 (source: NCBI BLink).  protein_id AT1G26890.1p  transcript_id AT1G26890.1  protein_id AT1G26890.1p  transcript_id AT1G26890.1  
At1g26900	chr1:009319756	0.0	C/9319756-9321474	AT1G26900.1 CDS  gene_syn T2P11.9, T2P11_9  go_component mitochondrion|GO:0005739||IEA  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22410.1); Has 13007 Blast hits to 4816 proteins in 111 species: Archae - 0; Bacteria - 4; Metazoa - 55; Fungi - 27; Plants - 12685; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G26900.1p  transcript_id AT1G26900.1  protein_id AT1G26900.1p  transcript_id AT1G26900.1  
At1g26910	chr1:009321709	0.0	W/9321709-9321718,9322072-9322573,9322660-9322813	AT1G26910.1 CDS  gene_syn T2P11.10, T2P11_10  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L10 (RPL10B)  note 60S ribosomal protein L10 (RPL10B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome (TAIR:AT1G14320.1); Has 1313 Blast hits to 1311 proteins in 457 species: Archae - 225; Bacteria - 9; Metazoa - 446; Fungi - 102; Plants - 110; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).  protein_id AT1G26910.1p  transcript_id AT1G26910.1  protein_id AT1G26910.1p  transcript_id AT1G26910.1  
At1g26911	chr1:009323740	0.0	W/9323740-9324200	AT1G26911.1 pseudogenic_transcript  pseudo  function Pseudogene of AT1G66590; cox19 family protein  
At1g26916	chr1:009327156	0.0	W/9327156-9327251	AT1G26916.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G26916.1p  transcript_id AT1G26916.1  protein_id AT1G26916.1p  transcript_id AT1G26916.1  
At1g26920	chr1:009329584	0.0	W/9329584-9330105	AT1G26920.1 CDS  gene_syn T2P11.11, T2P11_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69760.1); Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 16; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G26920.1p  transcript_id AT1G26920.1  protein_id AT1G26920.1p  transcript_id AT1G26920.1  
At1g26921	chr1:009330956	0.0	C/9330956-9331105	AT1G26921.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G26921.1p  transcript_id AT1G26921.1  protein_id AT1G26921.1p  transcript_id AT1G26921.1  
At1g26930	chr1:009336211	0.0	C/9336211-9337476	AT1G26930.1 CDS  gene_syn T2P11.12, T2P11_12  go_component peroxisome|GO:0005777|12154131|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), WD40 repeat (InterPro:IPR001680), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT2G02870.3); Has 5878 Blast hits to 3198 proteins in 197 species: Archae - 4; Bacteria - 215; Metazoa - 4694; Fungi - 17; Plants - 628; Viruses - 75; Other Eukaryotes - 245 (source: NCBI BLink).  protein_id AT1G26930.1p  transcript_id AT1G26930.1  protein_id AT1G26930.1p  transcript_id AT1G26930.1  
At1g26940	chr1:009343193	0.0	W/9343193-9343303,9343534-9343647,9343743-9343891,9344056-9344128,9344208-9344297,9344389-9344428,9344772-9344854,9344942-9344962	AT1G26940.1 CDS  gene_syn T2P11.13, T2P11_13  go_component endomembrane system|GO:0012505||IEA  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||IEA  go_process protein folding|GO:0006457||ISS  go_function peptidyl-prolyl cis-trans isomerase activity|GO:0003755||ISS  product peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein  note peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: CYP71 (CYCLOPHILIN71); chromatin binding / histone binding / peptidyl-prolyl cis-trans isomerase (TAIR:AT3G44600.1); Has 7846 Blast hits to 7844 proteins in 1250 species: Archae - 78; Bacteria - 3271; Metazoa - 1001; Fungi - 616; Plants - 300; Viruses - 0; Other Eukaryotes - 2580 (source: NCBI BLink).  protein_id AT1G26940.1p  transcript_id AT1G26940.1  protein_id AT1G26940.1p  transcript_id AT1G26940.1  
At1g26945	chr1:009351571	0.0	W/9351571-9351699,9352319-9352474	AT1G26945.1 CDS  gene_syn KDR, KIDARI  gene KDR  function Encodes a basic helix-loop-helix (bHLH) protein involved in blue/far-red light signaling. Physically interacts with HFR1 and negatively regulates its activity.  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_function transcription regulator activity|GO:0030528||IEA  go_process response to light stimulus|GO:0009416|16786307|IMP  product KDR (KIDARI); transcription regulator  note KIDARI (KDR); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: response to light stimulus; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: transcription regulator (TAIR:AT3G28857.1); Has 72 Blast hits to 72 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G26945.1p  transcript_id AT1G26945.1  protein_id AT1G26945.1p  transcript_id AT1G26945.1  
At1g26950	chr1:009353848	0.0	C/9353848-9354324	AT1G26950.1 mRNA_TE_gene  pseudo  gene_syn T2P11.14, T2P11_14  note Transposable element gene, similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT5G33360.1); similar to RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] (GB:ABE81893.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)  
At1g26960	chr1:009356126	0.0	W/9356126-9356231,9356313-9356683,9356949-9357239	AT1G26960.1 CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23, AtHB23, T2P11.15, T2P11_15  gene AtHB23  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to gibberellin stimulus|GO:0009739|17387478|IEP  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23); DNA binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23 (AtHB23); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: response to gibberellin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB13; DNA binding / sequence-specific DNA binding / transcription factor (TAIR:AT1G69780.1); Has 9186 Blast hits to 9151 proteins in 557 species: Archae - 0; Bacteria - 2; Metazoa - 7383; Fungi - 169; Plants - 1442; Viruses - 5; Other Eukaryotes - 185 (source: NCBI BLink).  protein_id AT1G26960.1p  transcript_id AT1G26960.1  protein_id AT1G26960.1p  transcript_id AT1G26960.1  
At1g26970	chr1:009359826	0.0	W/9359826-9359883,9360006-9360352,9360450-9360588,9360773-9360903,9361103-9361666	AT1G26970.1 CDS  gene_syn T2P11.16  go_component chloroplast|GO:0009507||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase, putative (TAIR:AT1G69790.1); Has 86480 Blast hits to 85409 proteins in 3166 species: Archae - 64; Bacteria - 7895; Metazoa - 38128; Fungi - 6767; Plants - 18696; Viruses - 364; Other Eukaryotes - 14566 (source: NCBI BLink).  protein_id AT1G26970.1p  transcript_id AT1G26970.1  protein_id AT1G26970.1p  transcript_id AT1G26970.1  
At1g26973	chr1:009363196	0.0	C/9363196-9363288	AT1G26973.1 miRNA  gene_syn MICRORNA 395, MICRORNA395A, MIR395, MIR395A  gene MIR395A  function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGAACUC. Predicted targets are ATP sulfurylases.  go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR395A (MICRORNA395A); miRNA  transcript_id AT1G26973.1  
At1g26975	chr1:009364471	0.0	W/9364471-9364570	AT1G26975.1 miRNA  gene_syn MICRORNA 395, MICRORNA395B, MIR395, MIR395B  gene MIR395B  function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases.  go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR395B (MICRORNA395B); miRNA  transcript_id AT1G26975.1  
At1g26976	chr1:009364996	0.0	W/9364996-9365037,9365160-9365252,9365563-9365610	AT1G26976.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G26976.1p  transcript_id AT1G26976.1  protein_id AT1G26976.1p  transcript_id AT1G26976.1  
At1g26985	chr1:009367080	0.0	W/9367080-9367179	AT1G26985.1 miRNA  gene_syn MICRORNA 395, MICRORNA395C, MIR395, MIR395C  gene MIR395C  function Encodes a microRNA that targets both APS and AST family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: CUGAAGUGUUUGGGGGGACUC. Predicted targets are ATP sulfurylases.  go_process cellular response to sulfate starvation|GO:0009970|15200956|IEP  go_process gene silencing by miRNA|GO:0035195|15851028|IDA  product MIR395C (MICRORNA395C); miRNA  transcript_id AT1G26985.1  
At1g26990	chr1:009368531	0.0	C/9368531-9373180	AT1G26990.1 mRNA_TE_gene  pseudo  gene_syn T7N9.5, T7N9_5  note Transposable element gene, copia-like retrotransposon family, has a 2.0e-294 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g27000	chr1:009374068	0.0	W/9374068-9374122,9374228-9374289,9374375-9374452,9374532-9374607,9374705-9374775,9374888-9374989,9375080-9375169,9375297-9375371,9375608-9375640,9375742-9375813,9376004-9376066,9376199-9376314,9376401-9376422	AT1G27000.1 CDS  gene_syn T2P11.17  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function DNA binding|GO:0003677||ISS  product bZIP family transcription factor  note bZIP family transcription factor; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G02730.2); Has 122 Blast hits to 113 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G27000.1p  transcript_id AT1G27000.1  protein_id AT1G27000.1p  transcript_id AT1G27000.1  
At1g27008	chr1:009377062	0.0	C/9377062-9377244	AT1G27008.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G27008.1  
At1g27020	chr1:009378635	0.0	W/9378635-9378673,9378751-9378903,9379337-9379555,9379646-9379761,9379858-9380021,9380113-9380267,9380339-9380419	AT1G27020.1 CDS  gene_syn T7N9.8, T7N9_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 377 Blast hits to 377 proteins in 117 species: Archae - 0; Bacteria - 208; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT1G27020.1p  transcript_id AT1G27020.1  protein_id AT1G27020.1p  transcript_id AT1G27020.1  
At1g27030	chr1:009381842	0.0	W/9381842-9381880,9381957-9382109,9382201-9382419,9382508-9382623,9383100-9383263,9383371-9383525,9383626-9383712	AT1G27030.1 CDS  gene_syn T7N9.9, T7N9_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27020.1); Has 376 Blast hits to 376 proteins in 117 species: Archae - 0; Bacteria - 207; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).  protein_id AT1G27030.1p  transcript_id AT1G27030.1  protein_id AT1G27030.1p  transcript_id AT1G27030.1  
At1g27040	chr1:009386893	0.0	C/9386893-9387825,9387917-9388354,9389391-9389608,9389736-9389838	AT1G27040.2 CDS  gene_syn T7N9.10, T7N9_10  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_function transporter activity|GO:0005215||ISS  product nitrate transporter, putative  note nitrate transporter, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2); calcium ion binding / transporter (TAIR:AT1G69850.1); Has 3538 Blast hits to 3472 proteins in 653 species: Archae - 0; Bacteria - 1334; Metazoa - 428; Fungi - 255; Plants - 1119; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT1G27040.2p  transcript_id AT1G27040.2  protein_id AT1G27040.2p  transcript_id AT1G27040.2  
At1g27040	chr1:009386893	0.0	C/9386893-9387825,9387917-9388354,9389391-9389608,9389736-9389847,9390016-9390018	AT1G27040.1 CDS  gene_syn T7N9.10, T7N9_10  go_component membrane|GO:0016020||IEA  go_process oligopeptide transport|GO:0006857||IEA  go_function transporter activity|GO:0005215||ISS  product nitrate transporter, putative  note nitrate transporter, putative; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2); calcium ion binding / transporter (TAIR:AT1G69850.1); Has 3538 Blast hits to 3472 proteins in 653 species: Archae - 0; Bacteria - 1334; Metazoa - 428; Fungi - 255; Plants - 1119; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).  protein_id AT1G27040.1p  transcript_id AT1G27040.1  protein_id AT1G27040.1p  transcript_id AT1G27040.1  
At1g27050	chr1:009391893	0.0	W/9391893-9392010,9392247-9392880,9393393-9393477,9393673-9394047,9394133-9394408	AT1G27050.1 CDS  gene_syn ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54, ATHB54, T7N9.11, T7N9_11  gene ATHB54  function Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54); nucleic acid binding / transcription factor  note ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54 (ATHB54); FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), RNA recognition motif, RNP-1 (InterPro:IPR000504), Homeodomain-like (InterPro:IPR009057), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor (TAIR:AT3G01470.1); Has 4153 Blast hits to 4145 proteins in 305 species: Archae - 2; Bacteria - 3; Metazoa - 2932; Fungi - 93; Plants - 1059; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G27050.1p  transcript_id AT1G27050.1  protein_id AT1G27050.1p  transcript_id AT1G27050.1  
At1g27060	chr1:009395023	0.0	W/9395023-9395218,9395300-9395452,9395534-9395692,9395766-9395924,9396017-9396148,9396228-9396392,9396477-9396673	AT1G27060.1 CDS  gene_syn T7N9.12, T7N9_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function Ran GTPase binding|GO:0008536||ISS  product regulator of chromosome condensation (RCC1) family protein  note regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Ran GTPase binding / chromatin binding / zinc ion binding (TAIR:AT5G12350.1); Has 15042 Blast hits to 4459 proteins in 302 species: Archae - 65; Bacteria - 1621; Metazoa - 6396; Fungi - 635; Plants - 1177; Viruses - 2; Other Eukaryotes - 5146 (source: NCBI BLink).  protein_id AT1G27060.1p  transcript_id AT1G27060.1  protein_id AT1G27060.1p  transcript_id AT1G27060.1  
At1g27070	chr1:009396945	0.0	C/9396945-9397040,9397119-9397187,9397347-9397494,9397584-9397729,9397825-9398039,9398120-9398297,9398386-9398551,9398645-9399225	AT1G27070.1 CDS  gene_syn T7N9.13, T7N9_13  product 5 -AMP-activated protein kinase-related  note 5 -AMP-activated protein kinase-related; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03420.1); Has 573 Blast hits to 552 proteins in 161 species: Archae - 1; Bacteria - 66; Metazoa - 210; Fungi - 126; Plants - 98; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).  protein_id AT1G27070.1p  transcript_id AT1G27070.1  protein_id AT1G27070.1p  transcript_id AT1G27070.1  
At1g27080	chr1:009400664	0.0	W/9400664-9400739,9401582-9401799,9402266-9402828,9402916-9403789	AT1G27080.1 CDS  gene_syn NITRATE TRANSPORTER 1.6, NRT1.6, T7N9.14, T7N9_14  gene NRT1.6  function Encodes a protein with low-affinity nitrate transporter activity that is expressed in the vascular tissue of the funiculus and the silique. This plasma membrane-localized enzyme is predicted to have 12 transmembrane domains. Plants lacking NRT1.6 have reduced levels of nitrate in their seeds and have increased levels of early embryonic developmental defects and seed abortion.  go_component plasma membrane|GO:0005886|19050168|IDA  go_process embryonic development ending in seed dormancy|GO:0009793|19050168|IMP  go_process suspensor development|GO:0010098|19050168|IMP  go_process cellular response to nitrogen levels|GO:0043562|19050168|IEP  go_process seed development|GO:0048316|19050168|IMP  go_process low affinity nitrate transport|GO:0080055|19050168|IDA  go_function transporter activity|GO:0005215||ISS  go_function low affinity nitrate transmembrane transporter activity|GO:0080054|19050168|IDA  product NRT1.6 (NITRATE TRANSPORTER 1.6); low affinity nitrate transmembrane transporter/ transporter  note NITRATE TRANSPORTER 1.6 (NRT1.6); FUNCTIONS IN: low affinity nitrate transmembrane transporter activity, transporter activity; INVOLVED IN: embryonic development ending in seed dormancy, suspensor development, low affinity nitrate transport, seed development, cellular response to nitrogen levels; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: TGF-beta receptor, type I/II extracellular region, conserved site (InterPro:IPR018456), TGF-beta receptor, type I/II extracellular region (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: proton-dependent oligopeptide transport (POT) family protein (TAIR:AT1G69870.1); Has 2221 Blast hits to 2151 proteins in 362 species: Archae - 0; Bacteria - 343; Metazoa - 434; Fungi - 232; Plants - 1121; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G27080.1p  transcript_id AT1G27080.1  protein_id AT1G27080.1p  transcript_id AT1G27080.1  
At1g27090	chr1:009404041	0.0	C/9404041-9404397,9404481-9404555,9405182-9405342,9405429-9406098	AT1G27090.1 CDS  gene_syn T7N9.15, T7N9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24690.1); Has 12562 Blast hits to 6645 proteins in 564 species: Archae - 0; Bacteria - 1771; Metazoa - 5560; Fungi - 1132; Plants - 2457; Viruses - 75; Other Eukaryotes - 1567 (source: NCBI BLink).  protein_id AT1G27090.1p  transcript_id AT1G27090.1  protein_id AT1G27090.1p  transcript_id AT1G27090.1  
At1g27100	chr1:009407557	0.0	C/9407557-9407841,9407944-9408594,9410451-9411074	AT1G27100.1 CDS  gene_syn T7N9.16, T7N9_16  go_component vacuole|GO:0005773|15539469|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin_cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69900.1); Has 184 Blast hits to 118 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 8; Plants - 166; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G27100.1p  transcript_id AT1G27100.1  protein_id AT1G27100.1p  transcript_id AT1G27100.1  
At1g27110	chr1:009413018	0.0	C/9413018-9413113,9413195-9413259,9413356-9413440,9413532-9413621,9413716-9413767,9413862-9413968,9414057-9414164,9414251-9414380,9414476-9414570,9414660-9414803,9414924-9415025,9415141-9415176	AT1G27110.3 CDS  gene_syn T7N9.17, T7N9_17  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G27150.1); Has 317 Blast hits to 313 proteins in 83 species: Archae - 11; Bacteria - 109; Metazoa - 78; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).  protein_id AT1G27110.3p  transcript_id AT1G27110.3  protein_id AT1G27110.3p  transcript_id AT1G27110.3  
At1g27110	chr1:009413018	0.0	C/9413018-9413113,9413195-9413259,9413356-9413440,9413532-9413621,9413716-9413767,9413862-9413968,9414057-9414164,9414251-9414380,9414476-9414570,9414660-9414803,9414924-9415025,9415141-9415239,9415384-9415536,9415790-9415879,9417357-9417392	AT1G27110.1 CDS  gene_syn T7N9.17, T7N9_17  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G27150.1); Has 358 Blast hits to 352 proteins in 93 species: Archae - 16; Bacteria - 129; Metazoa - 78; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G27110.1p  transcript_id AT1G27110.1  protein_id AT1G27110.1p  transcript_id AT1G27110.1  
At1g27110	chr1:009413071	0.0	C/9413071-9413109,9413195-9413259,9413356-9413440,9413532-9413621,9413716-9413767,9413862-9413968,9414057-9414164,9414251-9414380,9414476-9414570,9414660-9414803,9414924-9415025,9415141-9415239,9415384-9415536,9415790-9415879,9417357-9417392	AT1G27110.2 CDS  gene_syn T7N9.17, T7N9_17  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G27150.1); Has 356 Blast hits to 352 proteins in 93 species: Archae - 14; Bacteria - 129; Metazoa - 78; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).  protein_id AT1G27110.2p  transcript_id AT1G27110.2  protein_id AT1G27110.2p  transcript_id AT1G27110.2  
At1g27120	chr1:009421389	0.0	W/9421389-9422244,9422344-9422597,9422668-9422958,9423032-9423160,9423235-9423408,9423501-9423608,9423701-9423910	AT1G27120.1 CDS  gene_syn T7N9.18, T7N9_18  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||IEA  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function transferase activity, transferring hexosyl groups|GO:0016758||ISS  product galactosyltransferase family protein  note galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT5G62620.1); Has 1776 Blast hits to 1771 proteins in 89 species: Archae - 0; Bacteria - 2; Metazoa - 1406; Fungi - 2; Plants - 337; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G27120.1p  transcript_id AT1G27120.1  protein_id AT1G27120.1p  transcript_id AT1G27120.1  
At1g27130	chr1:009425582	0.0	W/9425582-9425908,9426241-9426597	AT1G27130.1 CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13, ATGSTU13, GLUTATHIONE S-TRANSFERASE 12, GST12, T7N9.190, T7N9_190  gene ATGSTU13  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13 (ATGSTU13); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cadmium ion, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14); glutathione transferase (TAIR:AT1G27140.1); Has 3403 Blast hits to 3400 proteins in 590 species: Archae - 0; Bacteria - 1487; Metazoa - 315; Fungi - 68; Plants - 1080; Viruses - 0; Other Eukaryotes - 453 (source: NCBI BLink).  protein_id AT1G27130.1p  transcript_id AT1G27130.1  protein_id AT1G27130.1p  transcript_id AT1G27130.1  
At1g27135	chr1:009427164	0.0	W/9427164-9427227,9427327-9427529	AT1G27135.1 CDS  function Encodes a Maternally expressed gene (MEG) family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1); Has 13 Blast hits to 13 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27135.1p  transcript_id AT1G27135.1  protein_id AT1G27135.1p  transcript_id AT1G27135.1  
At1g27140	chr1:009427858	0.0	W/9427858-9428187,9428315-9428716	AT1G27140.1 CDS  gene_syn ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14, ATGSTU14, GLUTATHIONE S-TRANSFERASE 13, GST13, T7N9.20, T7N9_20  gene ATGSTU14  function Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).  go_component cytoplasm|GO:0005737|12090627|NAS  go_process toxin catabolic process|GO:0009407|12090627|TAS  go_function glutathione transferase activity|GO:0004364||ISS  product ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14); glutathione transferase  note ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14 (ATGSTU14); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13); glutathione transferase (TAIR:AT1G27130.1); Has 3072 Blast hits to 3069 proteins in 639 species: Archae - 0; Bacteria - 1370; Metazoa - 198; Fungi - 55; Plants - 1032; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink).  protein_id AT1G27140.1p  transcript_id AT1G27140.1  protein_id AT1G27140.1p  transcript_id AT1G27140.1  
At1g27150	chr1:009429177	0.0	W/9429177-9429269,9429614-9429766,9429853-9429951,9430110-9430211,9430291-9430434,9430550-9430644,9430751-9430880,9430956-9431060,9431165-9431271,9431347-9431398,9431482-9431571,9431661-9431745,9431831-9431895,9431982-9432068	AT1G27150.1 CDS  gene_syn T7N9.21, T7N9_21  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G27110.1); Has 297 Blast hits to 297 proteins in 82 species: Archae - 4; Bacteria - 114; Metazoa - 76; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G27150.1p  transcript_id AT1G27150.1  protein_id AT1G27150.1p  transcript_id AT1G27150.1  
At1g27160	chr1:009432588	0.0	W/9432588-9433190	AT1G27160.1 CDS  gene_syn T7N9.22, T7N9_22  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process valyl-tRNA aminoacylation|GO:0006438||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function valine-tRNA ligase activity|GO:0004832||IEA  go_function ATP binding|GO:0005524||IEA  product valyl-tRNA synthetase / valine--tRNA ligase-related  note valyl-tRNA synthetase / valine--tRNA ligase-related; FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, valyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: TWN2 (TWIN 2); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / valine-tRNA ligase (TAIR:AT1G14610.1); Has 4382 Blast hits to 4381 proteins in 1396 species: Archae - 87; Bacteria - 2636; Metazoa - 205; Fungi - 90; Plants - 54; Viruses - 0; Other Eukaryotes - 1310 (source: NCBI BLink).  protein_id AT1G27160.1p  transcript_id AT1G27160.1  protein_id AT1G27160.1p  transcript_id AT1G27160.1  
At1g27170	chr1:009433577	0.0	W/9433577-9434049,9435287-9436403,9436488-9436898,9436986-9438584,9438665-9439219	AT1G27170.2 CDS  gene_syn T7N9.23, T7N9_23  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding / transmembrane receptor  note ATP binding / protein binding / transmembrane receptor; FUNCTIONS IN: protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1).  protein_id AT1G27170.2p  transcript_id AT1G27170.2  protein_id AT1G27170.2p  transcript_id AT1G27170.2  
At1g27170	chr1:009434718	0.0	W/9434718-9435190,9435287-9436403,9436488-9436898,9436986-9438584,9438665-9439219	AT1G27170.1 CDS  gene_syn T7N9.23, T7N9_23  go_component chloroplast|GO:0009507|15028209|IDA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product ATP binding / protein binding / transmembrane receptor  note ATP binding / protein binding / transmembrane receptor; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 61586 Blast hits to 25200 proteins in 940 species: Archae - 44; Bacteria - 4230; Metazoa - 15526; Fungi - 1004; Plants - 36967; Viruses - 8; Other Eukaryotes - 3807 (source: NCBI BLink).  protein_id AT1G27170.1p  transcript_id AT1G27170.1  protein_id AT1G27170.1p  transcript_id AT1G27170.1  
At1g27180	chr1:009439859	0.0	W/9439859-9440335,9441296-9441777,9441867-9443016,9443103-9443513,9443588-9445189,9445270-9445818	AT1G27180.1 CDS  gene_syn T7N9.24, T7N9_24  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, protein binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: ATP binding / protein binding / transmembrane receptor (TAIR:AT1G27170.1); Has 58076 Blast hits to 23700 proteins in 885 species: Archae - 52; Bacteria - 3644; Metazoa - 14396; Fungi - 777; Plants - 35721; Viruses - 12; Other Eukaryotes - 3474 (source: NCBI BLink).  protein_id AT1G27180.1p  transcript_id AT1G27180.1  protein_id AT1G27180.1p  transcript_id AT1G27180.1  
At1g27190	chr1:009446923	0.0	C/9446923-9448728	AT1G27190.1 CDS  gene_syn T7N9.25, T7N9_25  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product leucine-rich repeat transmembrane protein kinase, putative  note leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G69990.1); Has 68357 Blast hits to 43210 proteins in 1433 species: Archae - 27; Bacteria - 4242; Metazoa - 15832; Fungi - 1729; Plants - 40190; Viruses - 134; Other Eukaryotes - 6203 (source: NCBI BLink).  protein_id AT1G27190.1p  transcript_id AT1G27190.1  protein_id AT1G27190.1p  transcript_id AT1G27190.1  
At1g27200	chr1:009449812	0.0	C/9449812-9451539	AT1G27200.1 CDS  gene_syn T7N9.26, T7N9_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40720.1); Has 205 Blast hits to 205 proteins in 57 species: Archae - 0; Bacteria - 108; Metazoa - 2; Fungi - 4; Plants - 62; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G27200.1p  transcript_id AT1G27200.1  protein_id AT1G27200.1p  transcript_id AT1G27200.1  
At1g27210	chr1:009455669	0.0	C/9455669-9455681,9455771-9456147,9456262-9456788,9456875-9456974,9457057-9457917	AT1G27210.1 CDS  gene_syn T7N9.27, T7N9_27  go_component chloroplast|GO:0009507||IEA  go_function binding|GO:0005488||IEA  product binding  note binding; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT1G59850.1); Has 384 Blast hits to 309 proteins in 86 species: Archae - 2; Bacteria - 35; Metazoa - 89; Fungi - 48; Plants - 103; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G27210.1p  transcript_id AT1G27210.1  protein_id AT1G27210.1p  transcript_id AT1G27210.1  
At1g27213	chr1:009460035	0.0	C/9460035-9460187	AT1G27213.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G27213.1p  transcript_id AT1G27213.1  protein_id AT1G27213.1p  transcript_id AT1G27213.1  
At1g27220	chr1:009463806	0.0	W/9463806-9463945,9464080-9464204,9465155-9465444	AT1G27220.1 CDS  gene_syn F17L21.2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G27250.1); Has 499 Blast hits to 451 proteins in 116 species: Archae - 0; Bacteria - 10; Metazoa - 174; Fungi - 107; Plants - 191; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).  protein_id AT1G27220.1p  transcript_id AT1G27220.1  protein_id AT1G27220.1p  transcript_id AT1G27220.1  
At1g27240	chr1:009466237	0.0	W/9466237-9466376,9466493-9466739,9466815-9466916,9467005-9467076	AT1G27240.1 CDS  gene_syn F17L21.3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G24210.1); Has 364 Blast hits to 354 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 87; Plants - 100; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G27240.1p  transcript_id AT1G27240.1  protein_id AT1G27240.1p  transcript_id AT1G27240.1  
At1g27250	chr1:009468568	0.0	W/9468568-9468728,9468864-9468994,9469513-9469634	AT1G27250.1 CDS  gene_syn F17L21.4  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G27220.1); Has 398 Blast hits to 380 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 97; Plants - 111; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).  protein_id AT1G27250.1p  transcript_id AT1G27250.1  protein_id AT1G27250.1p  transcript_id AT1G27250.1  
At1g27260	chr1:009469948	0.0	W/9469948-9470054,9470131-9470400,9470497-9470614,9470717-9470818,9470896-9470967	AT1G27260.1 CDS  gene_syn F17L21.32  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G23810.1); Has 725 Blast hits to 375 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 158; Plants - 192; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G27260.1p  transcript_id AT1G27260.1  protein_id AT1G27260.1p  transcript_id AT1G27260.1  
At1g27270	chr1:009472077	0.0	W/9472077-9472219,9472303-9472596,9472693-9472810,9472897-9472998,9473081-9473149	AT1G27270.1 CDS  gene_syn F17L21.5, F17L21_5  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G23810.1); Has 425 Blast hits to 345 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 74; Plants - 147; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G27270.1p  transcript_id AT1G27270.1  protein_id AT1G27270.1p  transcript_id AT1G27270.1  
At1g27280	chr1:009474027	0.0	W/9474027-9474103,9474196-9474456,9474565-9474754,9474841-9474990	AT1G27280.1 CDS  gene_syn F17L21.6, F17L21_6  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function molecular_function|GO:0003674||ND  product paired amphipathic helix repeat-containing protein  note paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: paired amphipathic helix repeat-containing protein (TAIR:AT1G24230.1); Has 453 Blast hits to 367 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 99; Plants - 164; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G27280.1p  transcript_id AT1G27280.1  protein_id AT1G27280.1p  transcript_id AT1G27280.1  
At1g27285	chr1:009476197	0.0	W/9476197-9480516	AT1G27285.1 mRNA_TE_gene  pseudo  gene_syn F17L21.7, F17L21_7  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)  
At1g27290	chr1:009481788	0.0	W/9481788-9482199,9482560-9482576	AT1G27290.1 CDS  gene_syn F17L21.8, F17L21_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27290.1p  transcript_id AT1G27290.1  protein_id AT1G27290.1p  transcript_id AT1G27290.1  
At1g27290	chr1:009481788	0.0	W/9481788-9482199,9482560-9482576	AT1G27290.2 CDS  gene_syn F17L21.8, F17L21_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27290.2p  transcript_id AT1G27290.2  protein_id AT1G27290.2p  transcript_id AT1G27290.2  
At1g27300	chr1:009483324	0.0	W/9483324-9483464,9483733-9484194	AT1G27300.1 CDS  gene_syn F17L21.9, F17L21_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 36 Blast hits to 36 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G27300.1p  transcript_id AT1G27300.1  protein_id AT1G27300.1p  transcript_id AT1G27300.1  
At1g27310	chr1:009484615	0.0	C/9484615-9484686,9485494-9485790	AT1G27310.1 CDS  gene_syn F17L21.10, F17L21_10, NTF2A, NUCLEAR TRANSPORT FACTOR 2A  gene NTF2A  function Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634||ISS  go_component nuclear envelope|GO:0005635|16428596|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process protein import into nucleus|GO:0006606|16428596|IGI  go_process protein import into nucleus|GO:0006606|16428596|IMP  go_process protein import into nucleus|GO:0006606||ISS  go_process nucleocytoplasmic transport|GO:0006913|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IPI  go_function protein transporter activity|GO:0008565||ISS  product NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter  note NUCLEAR TRANSPORT FACTOR 2A (NTF2A); FUNCTIONS IN: protein transporter activity, Ran GTPase binding; INVOLVED IN: nucleocytoplasmic transport, protein import into nucleus; LOCATED IN: nuclear envelope, nucleus, intracellular, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter (TAIR:AT1G27970.1); Has 716 Blast hits to 716 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 356; Fungi - 160; Plants - 131; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G27310.1p  transcript_id AT1G27310.1  protein_id AT1G27310.1p  transcript_id AT1G27310.1  
At1g27320	chr1:009487780	0.0	W/9487780-9488286,9488568-9488849,9489052-9489221,9489310-9489522,9489619-9489805,9489899-9489950,9490065-9490294,9490383-9490481,9490568-9491673,9491763-9492027	AT1G27320.1 CDS  gene_syn AHK3, ARABIDOPSIS HISTIDINE KINASE 3, F17L21.11, F17L21_11  gene AHK3  function Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.  go_component plasma membrane|GO:0005886|16407152|IDA  go_process response to osmotic stress|GO:0006970|18077346|IMP  go_process response to cold|GO:0009409|18077346|IEP  go_process response to water deprivation|GO:0009414|18077346|IEP  go_process response to salt stress|GO:0009651|18077346|IEP  go_process cytokinin mediated signaling|GO:0009736|12068096|TAS  go_process regulation of seed germination|GO:0010029|16361392|IMP  go_process leaf senescence|GO:0010150|16407152|IMP  go_process regulation of chlorophyll catabolic process|GO:0010271|16361392|IMP  go_process defense response to bacterium|GO:0042742|19129491|IDA  go_process defense response to bacterium|GO:0042742|19129491|IMP  go_process regulation of shoot development|GO:0048831|16361392|IMP  go_function protein histidine kinase activity|GO:0004673|16407152|IMP  go_function protein histidine kinase activity|GO:0004673||ISS  go_function osmosensor activity|GO:0005034|18077346|IGI  go_function cytokinin receptor activity|GO:0009884|15923327|TAS  go_function cytokinin receptor activity|GO:0009884|16361392|TAS  product AHK3 (ARABIDOPSIS HISTIDINE KINASE 3); cytokinin receptor/ osmosensor/ protein histidine kinase  note ARABIDOPSIS HISTIDINE KINASE 3 (AHK3); FUNCTIONS IN: osmosensor activity, cytokinin receptor activity, protein histidine kinase activity; INVOLVED IN: in 10 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATP-binding region, ATPase-like (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver region (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation and phosphoacceptor region (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: AHK2 (ARABIDOPSIS HISTIDINE KINASE 2); cytokinin receptor/ osmosensor/ protein histidine kinase (TAIR:AT5G35750.1); Has 72905 Blast hits to 64764 proteins in 1775 species: Archae - 479; Bacteria - 60767; Metazoa - 23; Fungi - 1563; Plants - 1376; Viruses - 28; Other Eukaryotes - 8669 (source: NCBI BLink).  protein_id AT1G27320.1p  transcript_id AT1G27320.1  protein_id AT1G27320.1p  transcript_id AT1G27320.1  
At1g27330	chr1:009493064	0.0	W/9493064-9493066,9493523-9493679,9493852-9493898	AT1G27330.1 CDS  gene_syn F17L21.12, F17L21_12  go_component cellular_component|GO:0005575||ND  go_process response to oxidative stress|GO:0006979|18614705|IMP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27350.1); Has 267 Blast hits to 267 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G27330.1p  transcript_id AT1G27330.1  protein_id AT1G27330.1p  transcript_id AT1G27330.1  
At1g27340	chr1:009495741	0.0	W/9495741-9495892,9496606-9497857	AT1G27340.1 CDS  gene_syn F17L21.13, F17L21_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15710.1); Has 566 Blast hits to 560 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 563; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G27340.1p  transcript_id AT1G27340.1  protein_id AT1G27340.1p  transcript_id AT1G27340.1  
At1g27350	chr1:009498319	0.0	C/9498319-9498365,9498628-9498784,9499301-9499303	AT1G27350.1 CDS  gene_syn F17L21.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27330.1); Has 267 Blast hits to 267 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G27350.1p  transcript_id AT1G27350.1  protein_id AT1G27350.1p  transcript_id AT1G27350.1  
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.1 CDS  gene_syn F17L21.14, F17L21_14  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 11 (SPL11)  note squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27360.1p  transcript_id AT1G27360.1  protein_id AT1G27360.1p  transcript_id AT1G27360.1  
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.2 CDS  gene_syn F17L21.14, F17L21_14  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 11 (SPL11)  note squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27360.2p  transcript_id AT1G27360.2  protein_id AT1G27360.2p  transcript_id AT1G27360.2  
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.3 CDS  gene_syn F17L21.14, F17L21_14  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 11 (SPL11)  note squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27360.3p  transcript_id AT1G27360.3  protein_id AT1G27360.3p  transcript_id AT1G27360.3  
At1g27360	chr1:009502139	0.0	W/9502139-9502800,9502961-9503082,9503215-9503466,9503570-9503715	AT1G27360.4 CDS  gene_syn F17L21.14, F17L21_14  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 11 (SPL11)  note squamosa promoter-binding protein-like 11 (SPL11); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 10 (SPL10) (TAIR:AT1G27370.4); Has 550 Blast hits to 550 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 550; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27360.4p  transcript_id AT1G27360.4  protein_id AT1G27360.4p  transcript_id AT1G27360.4  
At1g27370	chr1:009505454	0.0	C/9505454-9505608,9505718-9505966,9506082-9506203,9506333-9506997	AT1G27370.1 CDS  gene_syn F17L21.15, F17L21_15  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 10 (SPL10)  note squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27370.1p  transcript_id AT1G27370.1  protein_id AT1G27370.1p  transcript_id AT1G27370.1  
At1g27370	chr1:009505454	0.0	C/9505454-9505608,9505718-9505966,9506082-9506203,9506333-9506997	AT1G27370.2 CDS  gene_syn F17L21.15, F17L21_15  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 10 (SPL10)  note squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27370.2p  transcript_id AT1G27370.2  protein_id AT1G27370.2p  transcript_id AT1G27370.2  
At1g27370	chr1:009505454	0.0	C/9505454-9505608,9505718-9505966,9506082-9506203,9506333-9506997	AT1G27370.3 CDS  gene_syn F17L21.15, F17L21_15  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 10 (SPL10)  note squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27370.3p  transcript_id AT1G27370.3  protein_id AT1G27370.3p  transcript_id AT1G27370.3  
At1g27370	chr1:009505454	0.0	C/9505454-9505608,9505718-9505966,9506082-9506203,9506333-9506997	AT1G27370.4 CDS  gene_syn F17L21.15, F17L21_15  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product squamosa promoter-binding protein-like 10 (SPL10)  note squamosa promoter-binding protein-like 10 (SPL10); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 11 (SPL11) (TAIR:AT1G27360.4); Has 557 Blast hits to 557 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 549; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27370.4p  transcript_id AT1G27370.4  protein_id AT1G27370.4p  transcript_id AT1G27370.4  
At1g27380	chr1:009508903	0.0	C/9508903-9509069,9509538-9509675,9509797-9509827	AT1G27380.1 CDS  gene_syn F17L21.16, F17L21_16, RIC2, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2  gene RIC2  function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.  go_component plasma membrane|GO:0005886|11752391|IDA  go_process pollen tube growth|GO:0009860|11752391|IMP  go_function molecular_function|GO:0003674||ND  product RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2 (RIC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); Has 59 Blast hits to 59 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27380.1p  transcript_id AT1G27380.1  protein_id AT1G27380.1p  transcript_id AT1G27380.1  
At1g27380	chr1:009508903	0.0	C/9508903-9509069,9509538-9509675,9509797-9509827	AT1G27380.2 CDS  gene_syn F17L21.16, F17L21_16, RIC2, ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2  gene RIC2  function encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.  go_component plasma membrane|GO:0005886|11752391|IDA  go_process pollen tube growth|GO:0009860|11752391|IMP  go_function molecular_function|GO:0003674||ND  product RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)  note ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2 (RIC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); Has 59 Blast hits to 59 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27380.2p  transcript_id AT1G27380.2  protein_id AT1G27380.2p  transcript_id AT1G27380.2  
At1g27385	chr1:009510475	0.0	C/9510475-9510526,9510603-9510638,9510827-9510901,9511133-9511185,9511361-9511444,9511818-9511931,9512116-9512216,9512571-9512820	AT1G27385.4 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454).  protein_id AT1G27385.4p  transcript_id AT1G27385.4  protein_id AT1G27385.4p  transcript_id AT1G27385.4  
At1g27385	chr1:009510475	0.0	C/9510475-9510526,9510603-9510638,9511133-9511185,9511361-9511444,9511818-9511931,9512116-9512219,9512571-9512820	AT1G27385.3 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454).  protein_id AT1G27385.3p  transcript_id AT1G27385.3  protein_id AT1G27385.3p  transcript_id AT1G27385.3  
At1g27385	chr1:009511129	0.0	C/9511129-9511185,9511361-9511444,9511818-9511931,9512116-9512216,9512571-9512820	AT1G27385.2 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 46 Blast hits to 46 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G27385.2p  transcript_id AT1G27385.2  protein_id AT1G27385.2p  transcript_id AT1G27385.2  
At1g27385	chr1:009511129	0.0	C/9511129-9511185,9511361-9511444,9511818-9511931,9512116-9512219,9512571-9512820	AT1G27385.1 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 46 Blast hits to 46 proteins in 13 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G27385.1p  transcript_id AT1G27385.1  protein_id AT1G27385.1p  transcript_id AT1G27385.1  
At1g27390	chr1:009513469	0.0	C/9513469-9513600,9513772-9513876,9514051-9514098,9514190-9514359,9514446-9514524,9514814-9514912	AT1G27390.1 CDS  gene_syn F17L21.18, F17L21_18, TOM20-2, TRANSLOCASE OUTER MEMBRANE 20-2  gene TOM20-2  function Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins  go_component cytosolic ribosome|GO:0022626|15821981|IDA  go_function metal ion binding|GO:0046872|12606038|IDA  go_component mitochondrion|GO:0005739|11743114|IDA  go_component mitochondrion|GO:0005739|12606038|IDA  go_component mitochondrion|GO:0005739|14671022|IDA  go_component mitochondrion|GO:0005739|14730085|IDA  go_component mitochondrion|GO:0005739|16618929|IDA  go_component mitochondrial outer membrane|GO:0005741|14730085|IDA  go_component mitochondrial outer membrane translocase complex|GO:0005742|11161051|IDA  go_component mitochondrial inner membrane|GO:0005743|14730085|IDA  go_component mitochondrial inner membrane presequence translocase complex|GO:0005744|11161051|TAS  go_component plastid|GO:0009536|16618929|IDA  go_process protein targeting to mitochondrion|GO:0006626|11161051|TAS  go_process protein targeting to mitochondrion|GO:0006626|17981999|IMP  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450|11161051|TAS  product TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2); P-P-bond-hydrolysis-driven protein transmembrane transporter/ metal ion binding  note TRANSLOCASE OUTER MEMBRANE 20-2 (TOM20-2); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity, metal ion binding; INVOLVED IN: protein targeting to mitochondrion; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide region (InterPro:IPR013026), Plant specific mitochondrial import receptor subunit TOM20 (InterPro:IPR010547); BEST Arabidopsis thaliana protein match is: TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3); P-P-bond-hydrolysis-driven protein transmembrane transporter (TAIR:AT3G27080.1); Has 58 Blast hits to 54 proteins in 16 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27390.1p  transcript_id AT1G27390.1  protein_id AT1G27390.1p  transcript_id AT1G27390.1  
At1g27400	chr1:009515230	0.0	W/9515230-9515232,9515329-9515365,9515484-9515524,9516004-9516234,9516319-9516421,9516512-9516579,9516678-9516725	AT1G27400.1 CDS  gene_syn F17L21.19, F17L21_19  go_component vacuole|GO:0005773|15215502|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L17 (RPL17A)  note 60S ribosomal protein L17 (RPL17A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, ribosome, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721), Ribosomal protein L22/L17, conserved site (InterPro:IPR018260); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L17 (RPL17B) (TAIR:AT1G67430.1); Has 1647 Blast hits to 1647 proteins in 483 species: Archae - 235; Bacteria - 361; Metazoa - 438; Fungi - 108; Plants - 104; Viruses - 0; Other Eukaryotes - 401 (source: NCBI BLink).  protein_id AT1G27400.1p  transcript_id AT1G27400.1  protein_id AT1G27400.1p  transcript_id AT1G27400.1  
At1g27410	chr1:009517226	0.0	W/9517226-9517517,9517601-9517803,9517887-9517994,9518078-9518743	AT1G27410.1 CDS  gene_syn F17L21.20, F17L21_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DNA cross-link repair protein-related  note DNA cross-link repair protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) (TAIR:AT3G26680.3); Has 573 Blast hits to 570 proteins in 153 species: Archae - 6; Bacteria - 34; Metazoa - 246; Fungi - 133; Plants - 85; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G27410.1p  transcript_id AT1G27410.1  protein_id AT1G27410.1p  transcript_id AT1G27410.1  
At1g27420	chr1:009519108	0.0	W/9519108-9519544,9519845-9520068,9520141-9520520	AT1G27420.1 CDS  gene_syn F17L21.21, F17L21_21  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G67480.2); Has 6640 Blast hits to 3983 proteins in 202 species: Archae - 11; Bacteria - 296; Metazoa - 5159; Fungi - 2; Plants - 652; Viruses - 264; Other Eukaryotes - 256 (source: NCBI BLink).  protein_id AT1G27420.1p  transcript_id AT1G27420.1  protein_id AT1G27420.1p  transcript_id AT1G27420.1  
At1g27430	chr1:009521045	0.0	C/9521045-9521304,9521389-9521526,9521656-9523983,9524131-9524841,9524988-9525086,9525185-9525275,9525390-9526220,9526390-9526460,9526862-9526928	AT1G27430.1 CDS  gene_syn F17L21.22, F17L21_22  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product GYF domain-containing protein  note GYF domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sperm cell, guard cell; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24300.1); Has 16210 Blast hits to 8637 proteins in 432 species: Archae - 0; Bacteria - 623; Metazoa - 6402; Fungi - 1406; Plants - 810; Viruses - 83; Other Eukaryotes - 6886 (source: NCBI BLink).  protein_id AT1G27430.1p  transcript_id AT1G27430.1  protein_id AT1G27430.1p  transcript_id AT1G27430.1  
At1g27435	chr1:009527956	0.0	C/9527956-9528054,9528668-9528814	AT1G27435.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27435.1p  transcript_id AT1G27435.1  protein_id AT1G27435.1p  transcript_id AT1G27435.1  
At1g27440	chr1:009529265	0.0	C/9529265-9529778,9530025-9530266,9530520-9530908,9531120-9531213	AT1G27440.1 CDS  gene_syn ATGUT1, F17L21.23, F17L21_23, GUT2, IRX10  gene GUT2  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component membrane|GO:0016020||ISS  go_process secondary cell wall biogenesis|GO:0009834|18980662|IMP  go_process glucuronoxylan biosynthetic process|GO:0010417|18980662|IMP  go_function catalytic activity|GO:0003824||ISS  go_function glucuronoxylan glucuronosyltransferase activity|GO:0080116|18980662|IMP  product GUT2; catalytic/ glucuronoxylan glucuronosyltransferase  note GUT2; FUNCTIONS IN: glucuronoxylan glucuronosyltransferase activity, catalytic activity; INVOLVED IN: secondary cell wall biogenesis, glucuronoxylan biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: GUT1; catalytic/ glucuronoxylan glucuronosyltransferase (TAIR:AT5G61840.1); Has 898 Blast hits to 891 proteins in 95 species: Archae - 0; Bacteria - 12; Metazoa - 260; Fungi - 4; Plants - 510; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).  protein_id AT1G27440.1p  transcript_id AT1G27440.1  protein_id AT1G27440.1p  transcript_id AT1G27440.1  
At1g27450	chr1:009532042	0.0	W/9532042-9532201,9532401-9532502,9532593-9532703,9532871-9532963,9533365-9533514,9533599-9533657,9533751-9533807	AT1G27450.1 CDS  gene_syn ADENINE PHOSPHORIBOSYL TRANSFERASE 1, APT1, ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, ATAPT1, F17L21.24, F17L21_24  gene APT1  function Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|12010467|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process adenine salvage|GO:0006168|12010467|TAS  go_function adenine phosphoribosyltransferase activity|GO:0003999|12010467|IDA  go_function adenine phosphoribosyltransferase activity|GO:0003999|8696367|IMP  go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS  product APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1); adenine phosphoribosyltransferase  note ADENINE PHOSPHORIBOSYL TRANSFERASE 1 (APT1); FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: response to cadmium ion, adenine salvage; LOCATED IN: cytosol, chloroplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase (TAIR:AT4G22570.1); Has 6360 Blast hits to 6360 proteins in 1411 species: Archae - 141; Bacteria - 3747; Metazoa - 151; Fungi - 126; Plants - 101; Viruses - 0; Other Eukaryotes - 2094 (source: NCBI BLink).  protein_id AT1G27450.1p  transcript_id AT1G27450.1  protein_id AT1G27450.1p  transcript_id AT1G27450.1  
At1g27450	chr1:009532421	0.0	W/9532421-9532502,9532593-9532703,9532871-9532963,9533365-9533514,9533599-9533657,9533751-9533807	AT1G27450.2 CDS  gene_syn ADENINE PHOSPHORIBOSYL TRANSFERASE 1, APT1, ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, ATAPT1, F17L21.24, F17L21_24  gene APT1  function Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component cytosol|GO:0005829|12010467|IDA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process adenine salvage|GO:0006168|12010467|TAS  go_function adenine phosphoribosyltransferase activity|GO:0003999|12010467|IDA  go_function adenine phosphoribosyltransferase activity|GO:0003999|8696367|IMP  go_function adenine phosphoribosyltransferase activity|GO:0003999||ISS  product APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1); adenine phosphoribosyltransferase  note ADENINE PHOSPHORIBOSYL TRANSFERASE 1 (APT1); FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: response to cadmium ion, adenine salvage; LOCATED IN: cytosol, chloroplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase (TAIR:AT4G22570.1); Has 6350 Blast hits to 6350 proteins in 1411 species: Archae - 141; Bacteria - 3739; Metazoa - 151; Fungi - 126; Plants - 101; Viruses - 0; Other Eukaryotes - 2092 (source: NCBI BLink).  protein_id AT1G27450.2p  transcript_id AT1G27450.2  protein_id AT1G27450.2p  transcript_id AT1G27450.2  
At1g27460	chr1:009534977	0.0	W/9534977-9535174,9535268-9535526,9535622-9536793,9536862-9537006,9537114-9537424	AT1G27460.1 CDS  gene_syn F17L21.25, F17L21_25, NO POLLEN GERMINATION RELATED 1, NPGR1  gene NPGR1  function encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function calmodulin binding|GO:0005516|11782485|ISS  go_function calmodulin binding|GO:0005516|12928497|TAS  product NPGR1 (NO POLLEN GERMINATION RELATED 1); calmodulin binding  note NO POLLEN GERMINATION RELATED 1 (NPGR1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: NPG1 (no pollen germination 1); calmodulin binding (TAIR:AT2G43040.1); Has 1592 Blast hits to 1321 proteins in 206 species: Archae - 144; Bacteria - 431; Metazoa - 461; Fungi - 20; Plants - 84; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink).  protein_id AT1G27460.1p  transcript_id AT1G27460.1  protein_id AT1G27460.1p  transcript_id AT1G27460.1  
At1g27461	chr1:009537948	0.0	C/9537948-9539012	AT1G27461.1 CDS  product unknown protein  note unknown protein; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G27461.1p  transcript_id AT1G27461.1  protein_id AT1G27461.1p  transcript_id AT1G27461.1  
At1g27470	chr1:009540368	0.0	C/9540368-9540695,9540777-9541037,9541190-9541371,9541455-9542032,9542379-9542526,9542767-9542929,9543003-9543116,9543269-9543332,9543418-9543709,9543814-9543957,9544060-9544218	AT1G27470.1 CDS  gene_syn F17L21.26, F17L21_26  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin-related / WD-40 repeat protein-related  note transducin-related / WD-40 repeat protein-related; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT4G07410.1); Has 6753 Blast hits to 4580 proteins in 346 species: Archae - 8; Bacteria - 2018; Metazoa - 1907; Fungi - 1463; Plants - 459; Viruses - 0; Other Eukaryotes - 898 (source: NCBI BLink).  protein_id AT1G27470.1p  transcript_id AT1G27470.1  protein_id AT1G27470.1p  transcript_id AT1G27470.1  
At1g27480	chr1:009544607	0.0	W/9544607-9545007,9545271-9546168	AT1G27480.1 CDS  gene_syn F17L21.27, F17L21_27  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function phosphatidylcholine-sterol O-acyltransferase activity|GO:0004607||ISS  product lecithin:cholesterol acyltransferase family protein / LACT family protein  note lecithin:cholesterol acyltransferase family protein / LACT family protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); Has 852 Blast hits to 847 proteins in 171 species: Archae - 0; Bacteria - 22; Metazoa - 582; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).  protein_id AT1G27480.1p  transcript_id AT1G27480.1  protein_id AT1G27480.1p  transcript_id AT1G27480.1  
At1g27490	chr1:009546373	0.0	C/9546373-9546586,9546710-9546890,9546974-9547073	AT1G27490.1 CDS  gene_syn F17L21.28, F17L21_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G23260.1); Has 41 Blast hits to 37 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27490.1p  transcript_id AT1G27490.1  protein_id AT1G27490.1p  transcript_id AT1G27490.1  
At1g27500	chr1:009551629	0.0	C/9551629-9551830,9551904-9553654	AT1G27500.1 CDS  gene_syn F17L21.29, F17L21_29  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  product kinesin light chain-related  note kinesin light chain-related; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide region (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: kinesin light chain-related (TAIR:AT3G27960.1); Has 9593 Blast hits to 4041 proteins in 387 species: Archae - 146; Bacteria - 2714; Metazoa - 5077; Fungi - 488; Plants - 183; Viruses - 0; Other Eukaryotes - 985 (source: NCBI BLink).  protein_id AT1G27500.1p  transcript_id AT1G27500.1  protein_id AT1G27500.1p  transcript_id AT1G27500.1  
At1g27510	chr1:009554945	0.0	C/9554945-9555046,9555125-9555217,9555461-9555535,9555623-9555789,9555891-9556017,9556157-9556846,9557028-9557109,9557189-9557295,9557603-9557668,9557747-9557863,9557964-9558293	AT1G27510.1 CDS  go_component thylakoid membrane|GO:0042651|17540731|IDA  go_process response to singlet oxygen|GO:0000304|17540731|IGI  product unknown protein  note INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: EX1 (EXECUTER1) (TAIR:AT4G33630.2); Has 213 Blast hits to 208 proteins in 76 species: Archae - 0; Bacteria - 13; Metazoa - 63; Fungi - 31; Plants - 69; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G27510.1p  transcript_id AT1G27510.1  protein_id AT1G27510.1p  transcript_id AT1G27510.1  
At1g27520	chr1:009558752	0.0	W/9558752-9558882,9558970-9559012,9559086-9559151,9559230-9559291,9559368-9559467,9559594-9559776,9560018-9560066,9560154-9560333,9560477-9560597,9560707-9560788,9560880-9560965,9561075-9561175,9561298-9561439,9561525-9561675,9561864-9562091	AT1G27520.1 CDS  gene_syn T17H3.2, T17H3_2  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|GO:0004571||IEA  go_function calcium ion binding|GO:0005509||IEA  go_process protein amino acid N-linked glycosylation|GO:0006487||ISS  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycoside hydrolase family 47 protein  note glycoside hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 47 protein (TAIR:AT5G43710.1); Has 1556 Blast hits to 1349 proteins in 142 species: Archae - 0; Bacteria - 8; Metazoa - 690; Fungi - 626; Plants - 92; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G27520.1p  transcript_id AT1G27520.1  protein_id AT1G27520.1p  transcript_id AT1G27520.1  
At1g27530	chr1:009562761	0.0	C/9562761-9562890,9563409-9563470,9563555-9563887	AT1G27530.1 CDS  gene_syn T17H3.3, T17H3_3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 183 Blast hits to 183 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).  protein_id AT1G27530.1p  transcript_id AT1G27530.1  protein_id AT1G27530.1p  transcript_id AT1G27530.1  
At1g27540	chr1:009566608	0.0	C/9566608-9567733,9567824-9567849	AT1G27540.2 CDS  gene_syn T17H3.4, T17H3_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27580.1); Has 149 Blast hits to 146 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27540.2p  transcript_id AT1G27540.2  protein_id AT1G27540.2p  transcript_id AT1G27540.2  
At1g27540	chr1:009566608	0.0	C/9566608-9567849	AT1G27540.1 CDS  gene_syn T17H3.4, T17H3_4  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27580.1); Has 148 Blast hits to 145 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27540.1p  transcript_id AT1G27540.1  protein_id AT1G27540.1p  transcript_id AT1G27540.1  
At1g27550	chr1:009568813	0.0	C/9568813-9569045,9569186-9569330	AT1G27550.1 CDS  gene_syn T17H3.5, T17H3_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27580.1); Has 60 Blast hits to 60 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27550.1p  transcript_id AT1G27550.1  protein_id AT1G27550.1p  transcript_id AT1G27550.1  
At1g27560	chr1:009570855	0.0	C/9570855-9571987	AT1G27560.1 pseudogenic_transcript  pseudo  gene_syn T17H3.6, T17H3_6  function pseudogene of F-box family protein-related  
At1g27565	chr1:009574710	0.0	W/9574710-9574740,9574866-9574978	AT1G27565.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52905.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27565.1p  transcript_id AT1G27565.1  protein_id AT1G27565.1p  transcript_id AT1G27565.1  
At1g27570	chr1:009575538	0.0	W/9575538-9575752,9576162-9576178,9576260-9576354,9576707-9576805,9577051-9577346,9580382-9580490,9580878-9581006,9581414-9582376	AT1G27570.2 CDS  gene_syn T17H3.7, T17H3_7  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27590.1).  protein_id AT1G27570.2p  transcript_id AT1G27570.2  protein_id AT1G27570.2p  transcript_id AT1G27570.2  
At1g27570	chr1:009575538	0.0	W/9575538-9575752,9576162-9576321,9576707-9576805,9576944-9577055,9577184-9577346,9580382-9580490,9580878-9581006,9581414-9582376	AT1G27570.1 CDS  gene_syn T17H3.7, T17H3_7  go_function binding|GO:0005488||IEA  go_function phosphotransferase activity, alcohol group as acceptor|GO:0016773||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function inositol or phosphatidylinositol kinase activity|GO:0004428||ISS  product phosphatidylinositol 3- and 4-kinase family protein  note phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3- and 4-kinase, catalytic (InterPro:IPR000403), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27590.1); Has 229 Blast hits to 229 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 55; Fungi - 2; Plants - 143; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G27570.1p  transcript_id AT1G27570.1  protein_id AT1G27570.1p  transcript_id AT1G27570.1  
At1g27580	chr1:009589933	0.0	C/9589933-9590822,9590871-9591075	AT1G27580.1 CDS  gene_syn T22C5.1  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G27540.2); Has 124 Blast hits to 124 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27580.1p  transcript_id AT1G27580.1  protein_id AT1G27580.1p  transcript_id AT1G27580.1  
At1g27590	chr1:009592293	0.0	W/9592293-9592507,9592719-9592878,9593225-9593317,9593458-9593560,9593689-9593912	AT1G27590.1 CDS  gene_syn T22C5.2  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.1); Has 81 Blast hits to 81 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 4; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G27590.1p  transcript_id AT1G27590.1  protein_id AT1G27590.1p  transcript_id AT1G27590.1  
At1g27595	chr1:009596475	0.0	W/9596475-9596981,9597057-9597704,9597863-9597931,9598188-9598298,9598367-9598609,9598892-9598939,9599028-9599165,9599394-9599549,9599638-9599700,9599935-9600045,9600135-9600218,9600318-9600365,9600640-9600714,9600924-9601019,9601747-9601827,9601901-9601972,9602312-9602356,9602456-9602539,9602622-9602725,9602815-9602917	AT1G27595.1 CDS  gene_syn T22C5.3  product unknown protein  note EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ESP4 (ENHANCED SILENCING PHENOTYPE 4); binding (TAIR:AT5G01400.1); Has 529 Blast hits to 235 proteins in 85 species: Archae - 0; Bacteria - 3; Metazoa - 125; Fungi - 41; Plants - 31; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).  protein_id AT1G27595.1p  transcript_id AT1G27595.1  protein_id AT1G27595.1p  transcript_id AT1G27595.1  
At1g27600	chr1:009604083	0.0	C/9604083-9604253,9604344-9604593,9605118-9605881	AT1G27600.1 CDS  gene_syn T22C5.4  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 43 protein  note glycosyl transferase family 43 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase (TAIR:AT2G37090.1); Has 547 Blast hits to 546 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 381; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G27600.1p  transcript_id AT1G27600.1  protein_id AT1G27600.1p  transcript_id AT1G27600.1  
At1g27600	chr1:009604083	0.0	C/9604083-9604253,9604344-9604593,9605118-9605881	AT1G27600.2 CDS  gene_syn T22C5.4  go_component membrane|GO:0016020||IEA  go_process protein amino acid glycosylation|GO:0006486||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  product glycosyl transferase family 43 protein  note glycosyl transferase family 43 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase (TAIR:AT2G37090.1); Has 547 Blast hits to 546 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 381; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G27600.2p  transcript_id AT1G27600.2  protein_id AT1G27600.2p  transcript_id AT1G27600.2  
At1g27610	chr1:009607111	0.0	C/9607111-9607305,9607428-9607577	AT1G27610.1 CDS  gene_syn T22C5.5  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27610.1p  transcript_id AT1G27610.1  protein_id AT1G27610.1p  transcript_id AT1G27610.1  
At1g27620	chr1:009608444	0.0	W/9608444-9608863,9609524-9610432	AT1G27620.1 CDS  gene_syn T22C5.6  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT2G40230.1); Has 1303 Blast hits to 1293 proteins in 113 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 44; Plants - 1257; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27620.1p  transcript_id AT1G27620.1  protein_id AT1G27620.1p  transcript_id AT1G27620.1  
At1g27630	chr1:009611647	0.0	W/9611647-9611876,9612590-9612671,9612926-9613060,9613142-9613314,9613392-9613537,9613780-9613967	AT1G27630.1 CDS  gene_syn CYCLIN T 1;3, CYCT1;3, T22C5.8  gene CYCT1;3  go_component nucleus|GO:0005634|15610358|IDA  go_process regulation of cell cycle|GO:0051726||ISS  go_function cyclin-dependent protein kinase activity|GO:0004693||ISS  product CYCT1;3 (CYCLIN T 1;3); cyclin-dependent protein kinase  note CYCLIN T 1;3 (CYCT1;3); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: cyclin family protein (TAIR:AT5G45190.1); Has 1136 Blast hits to 1136 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 700; Fungi - 230; Plants - 139; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G27630.1p  transcript_id AT1G27630.1  protein_id AT1G27630.1p  transcript_id AT1G27630.1  
At1g27640	chr1:009614463	0.0	C/9614463-9614906	AT1G27640.1 CDS  gene_syn T22C5.9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27640.1p  transcript_id AT1G27640.1  protein_id AT1G27640.1p  transcript_id AT1G27640.1  
At1g27650	chr1:009615152	0.0	W/9615152-9616042	AT1G27650.1 CDS  gene_syn ATU2AF35A, T22C5.30  gene ATU2AF35A  function U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|16407443|IDA  go_process photoperiodism, flowering|GO:0048573|16407443|IMP  go_function RNA binding|GO:0003723||ISS  product ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding  note ATU2AF35A; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT5G42820.2); Has 4601 Blast hits to 3630 proteins in 230 species: Archae - 0; Bacteria - 65; Metazoa - 2980; Fungi - 543; Plants - 388; Viruses - 15; Other Eukaryotes - 610 (source: NCBI BLink).  protein_id AT1G27650.1p  transcript_id AT1G27650.1  protein_id AT1G27650.1p  transcript_id AT1G27650.1  
At1g27650	chr1:009615302	0.0	W/9615302-9616042	AT1G27650.2 CDS  gene_syn ATU2AF35A, T22C5.30  gene ATU2AF35A  function U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function RNA binding|GO:0003723||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component nucleus|GO:0005634|16407443|IDA  go_process photoperiodism, flowering|GO:0048573|16407443|IMP  go_function RNA binding|GO:0003723||ISS  product ATU2AF35A; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding  note ATU2AF35A; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, region 1 (InterPro:IPR003954), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: U2AF35B; RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding (TAIR:AT5G42820.2); Has 4568 Blast hits to 3594 proteins in 227 species: Archae - 0; Bacteria - 65; Metazoa - 2976; Fungi - 533; Plants - 391; Viruses - 11; Other Eukaryotes - 592 (source: NCBI BLink).  protein_id AT1G27650.2p  transcript_id AT1G27650.2  protein_id AT1G27650.2p  transcript_id AT1G27650.2  
At1g27660	chr1:009621701	0.0	W/9621701-9621846,9622202-9622919,9623972-9624103,9624330-9624395,9624669-9624734,9625326-9625385,9625493-9625666	AT1G27660.1 CDS  gene_syn T22C5.11, T22C5_11  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  product ethylene-responsive protein -related  note ethylene-responsive protein -related; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT1G61660.1); Has 1339 Blast hits to 1082 proteins in 58 species: Archae - 0; Bacteria - 6; Metazoa - 253; Fungi - 24; Plants - 627; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).  protein_id AT1G27660.1p  transcript_id AT1G27660.1  protein_id AT1G27660.1p  transcript_id AT1G27660.1  
At1g27670	chr1:009627715	0.0	C/9627715-9628413	AT1G27670.1 CDS  gene_syn T22C5.12, T22C5_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 17 Blast hits to 17 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27670.1p  transcript_id AT1G27670.1  protein_id AT1G27670.1p  transcript_id AT1G27670.1  
At1g27671	chr1:009629026	0.0	W/9629026-9630729	AT1G27671.1 pseudogenic_transcript  pseudo  function pseudogene of DRM2/DMT7 (domain rearranged methyltransferase protein)  
At1g27680	chr1:009631630	0.0	W/9631630-9631842,9632298-9632411,9632488-9632661,9632745-9632837,9632914-9632997,9633069-9633124,9633202-9633295,9633378-9633563,9633659-9633739,9633828-9633914,9634001-9634273,9634349-9634450	AT1G27680.1 CDS  gene_syn ADPGLC-PPASE LARGE SUBUNIT, APL2, T22C5.13, T22C5_13  gene APL2  function ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.  go_component cellular_component|GO:0005575||ND  go_process starch biosynthetic process|GO:0019252|9841881|TAS  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|12748181|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|18614708|IDA  go_function glucose-1-phosphate adenylyltransferase activity|GO:0008878|8292792|ISS  product APL2 (ADPGLC-PPASE LARGE SUBUNIT); glucose-1-phosphate adenylyltransferase  note ADPGLC-PPASE LARGE SUBUNIT (APL2); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: starch biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: APL3; glucose-1-phosphate adenylyltransferase (TAIR:AT4G39210.1); Has 7485 Blast hits to 7434 proteins in 1223 species: Archae - 309; Bacteria - 4339; Metazoa - 60; Fungi - 22; Plants - 1370; Viruses - 0; Other Eukaryotes - 1385 (source: NCBI BLink).  protein_id AT1G27680.1p  transcript_id AT1G27680.1  protein_id AT1G27680.1p  transcript_id AT1G27680.1  
At1g27690	chr1:009636681	0.0	W/9636681-9637082,9637325-9637675,9637759-9638307	AT1G27690.1 CDS  gene_syn T22C5.14, T22C5_14  go_process glycerol biosynthetic process|GO:0006114||IEA  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glycerol biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19540.1); Has 114 Blast hits to 112 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27690.1p  transcript_id AT1G27690.1  protein_id AT1G27690.1p  transcript_id AT1G27690.1  
At1g27695	chr1:009639214	0.0	W/9639214-9639253,9639329-9639373,9639701-9639733,9639845-9640002	AT1G27695.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5231 Blast hits to 841 proteins in 144 species: Archae - 32; Bacteria - 309; Metazoa - 3238; Fungi - 61; Plants - 1195; Viruses - 55; Other Eukaryotes - 341 (source: NCBI BLink).  protein_id AT1G27695.1p  transcript_id AT1G27695.1  protein_id AT1G27695.1p  transcript_id AT1G27695.1  
At1g27695	chr1:009639214	0.0	W/9639214-9639253,9639329-9639373,9639701-9639733,9639845-9640002	AT1G27695.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5231 Blast hits to 841 proteins in 144 species: Archae - 32; Bacteria - 309; Metazoa - 3238; Fungi - 61; Plants - 1195; Viruses - 55; Other Eukaryotes - 341 (source: NCBI BLink).  protein_id AT1G27695.2p  transcript_id AT1G27695.2  protein_id AT1G27695.2p  transcript_id AT1G27695.2  
At1g27700	chr1:009640394	0.0	C/9640394-9640419,9640519-9640705,9640800-9641288,9641365-9641479,9641676-9641752	AT1G27700.1 CDS  gene_syn T22C5.15, T22C5_15  go_component nucleus|GO:0005634|14617066|IDA  go_process vesicle-mediated transport|GO:0016192||IEA  go_process Golgi vesicle transport|GO:0048193||IEA  go_function protein binding|GO:0005515||IEA  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT4G30240.1); Has 64 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27700.1p  transcript_id AT1G27700.1  protein_id AT1G27700.1p  transcript_id AT1G27700.1  
At1g27710	chr1:009642550	0.0	W/9642550-9643042,9643061-9643188	AT1G27710.2 CDS  gene_syn T22C5.16, T22C5_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 111357 Blast hits to 28254 proteins in 1618 species: Archae - 161; Bacteria - 35687; Metazoa - 37412; Fungi - 6791; Plants - 10652; Viruses - 1325; Other Eukaryotes - 19329 (source: NCBI BLink).  protein_id AT1G27710.2p  transcript_id AT1G27710.2  protein_id AT1G27710.2p  transcript_id AT1G27710.2  
At1g27710	chr1:009642550	0.0	W/9642550-9643188	AT1G27710.1 CDS  gene_syn T22C5.16, T22C5_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product glycine-rich protein  note glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 120548 Blast hits to 30075 proteins in 1672 species: Archae - 197; Bacteria - 36804; Metazoa - 40978; Fungi - 7705; Plants - 11642; Viruses - 1515; Other Eukaryotes - 21707 (source: NCBI BLink).  protein_id AT1G27710.1p  transcript_id AT1G27710.1  protein_id AT1G27710.1p  transcript_id AT1G27710.1  
At1g27720	chr1:009643351	0.0	C/9643351-9643502,9643612-9643771,9643856-9643906,9643996-9644118,9644198-9644254,9644341-9644396,9644489-9644627,9644713-9644800,9644953-9645077,9645304-9646010,9646141-9646201,9646454-9646555,9646646-9646878,9647149-9647215,9647335-9647376	AT1G27720.1 CDS  gene_syn T22C5.17, T22C5_17, TAF4, TAF4B, TBP-ASSOCIATED FACTOR 4, TBP-ASSOCIATED FACTOR 4B  gene TAF4B  go_component transcription factor TFIID complex|GO:0005669||IEA  go_process transcription initiation|GO:0006352||IEA  go_function transcription initiation factor activity|GO:0016986||IEA  go_function transcription initiation factor activity|GO:0016986||ISS  product TAF4B (TBP-ASSOCIATED FACTOR 4B); transcription initiation factor  note TBP-ASSOCIATED FACTOR 4B (TAF4B); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900); BEST Arabidopsis thaliana protein match is: TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor (TAIR:AT5G43130.1); Has 720 Blast hits to 645 proteins in 126 species: Archae - 0; Bacteria - 18; Metazoa - 222; Fungi - 115; Plants - 49; Viruses - 2; Other Eukaryotes - 314 (source: NCBI BLink).  protein_id AT1G27720.1p  transcript_id AT1G27720.1  protein_id AT1G27720.1p  transcript_id AT1G27720.1  
At1g27730	chr1:009648302	0.0	C/9648302-9648985	AT1G27730.1 CDS  gene_syn STZ, T22C5.18, T22C5_18, ZAT10, salt tolerance zinc finger  gene STZ  function Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress.  go_component nucleus|GO:0005634|15333755|IDA  go_process response to oxidative stress|GO:0006979|18156220|IMP  go_process response to cold|GO:0009409|15333755|IEP  go_process response to water deprivation|GO:0009414|15333755|IEP  go_process response to water deprivation|GO:0009414|15333755|IMP  go_process response to wounding|GO:0009611|16258017|IEP  go_process response to high light intensity|GO:0009644|18156220|IEP  go_process response to salt stress|GO:0009651|15333755|IEP  go_process response to salt stress|GO:0009651|8662738|IEP  go_process response to salt stress|GO:0009651|8662738|IGI  go_process response to abscisic acid stimulus|GO:0009737|15333755|IEP  go_process photoprotection|GO:0010117|18156220|IMP  go_process response to chitin|GO:0010200|15923325|IEP  go_process photosynthesis|GO:0015979|18156220|IMP  go_process multicellular organism growth|GO:0035264|15333755|IMP  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|8662738|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function transcription repressor activity|GO:0016564|15333755|IDA  product STZ (salt tolerance zinc finger); nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding  note salt tolerance zinc finger (STZ); FUNCTIONS IN: transcription repressor activity, transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6); nucleic acid binding / transcription factor/ zinc ion binding (TAIR:AT5G04340.1); Has 4189 Blast hits to 3065 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 3497; Fungi - 33; Plants - 520; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).  protein_id AT1G27730.1p  transcript_id AT1G27730.1  protein_id AT1G27730.1p  transcript_id AT1G27730.1  
At1g27740	chr1:009654753	0.0	W/9654753-9655106,9655198-9655392,9655481-9655612,9655711-9655806	AT1G27740.1 CDS  gene_syn T22C5.19, T22C5_19  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT5G43175.1); Has 1549 Blast hits to 1549 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 1531; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G27740.1p  transcript_id AT1G27740.1  protein_id AT1G27740.1p  transcript_id AT1G27740.1  
At1g27750	chr1:009657425	0.0	W/9657425-9657731,9658043-9658761,9658974-9660016,9660215-9660390,9660481-9661129,9661235-9661316,9661402-9661449,9661547-9661750	AT1G27750.1 CDS  gene_syn T22C5.20, T22C5_20  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: FPA; RNA binding (TAIR:AT2G43410.4); Has 43321 Blast hits to 25070 proteins in 1124 species: Archae - 78; Bacteria - 4579; Metazoa - 20319; Fungi - 5516; Plants - 6313; Viruses - 1307; Other Eukaryotes - 5209 (source: NCBI BLink).  protein_id AT1G27750.1p  transcript_id AT1G27750.1  protein_id AT1G27750.1p  transcript_id AT1G27750.1  
At1g27752	chr1:009662250	0.0	W/9662250-9662673,9662797-9662956,9663088-9663149,9663959-9664053,9664240-9664353,9664555-9664620,9665115-9665212,9665474-9665886,9666129-9667318	AT1G27752.1 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 330 Blast hits to 312 proteins in 96 species: Archae - 0; Bacteria - 26; Metazoa - 143; Fungi - 77; Plants - 32; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).  protein_id AT1G27752.1p  transcript_id AT1G27752.1  protein_id AT1G27752.1p  transcript_id AT1G27752.1  
At1g27752	chr1:009663144	0.0	W/9663144-9663149,9663970-9664053,9664240-9664353,9664555-9664620,9665115-9665212,9665474-9665886,9666129-9667318	AT1G27752.2 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); Has 307 Blast hits to 291 proteins in 93 species: Archae - 0; Bacteria - 26; Metazoa - 132; Fungi - 77; Plants - 29; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).  protein_id AT1G27752.2p  transcript_id AT1G27752.2  protein_id AT1G27752.2p  transcript_id AT1G27752.2  
At1g27760	chr1:009668895	0.0	W/9668895-9668904,9669097-9669265,9669342-9669422,9669536-9669618,9669697-9669812,9669917-9670027,9670121-9670230,9670307-9670619,9670709-9670837,9670940-9671017,9671111-9671188,9671275-9671322	AT1G27760.3 CDS  gene_syn ATSAT32, SALT-TOLERANCE 32, SAT32, T22C5.22, T22C5_22  gene SAT32  function Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|19210750|IDA  go_component cytoplasm|GO:0005737|19210750|IDA  go_process response to salt stress|GO:0009651|19210750|IMP  product interferon-related developmental regulator family protein / IFRD protein family  note SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator (InterPro:IPR007701), Interferon-related protein conserved region (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 247 Blast hits to 247 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 37; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G27760.3p  transcript_id AT1G27760.3  protein_id AT1G27760.3p  transcript_id AT1G27760.3  
At1g27760	chr1:009668895	0.0	W/9668895-9668904,9669097-9669265,9669354-9669422,9669536-9669618,9669697-9669812,9669917-9670027,9670121-9670230,9670307-9670619,9670709-9670837,9670940-9671017,9671111-9671188,9671275-9671322	AT1G27760.1 CDS  gene_syn ATSAT32, SALT-TOLERANCE 32, SAT32, T22C5.22, T22C5_22  gene SAT32  function Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|19210750|IDA  go_component cytoplasm|GO:0005737|19210750|IDA  go_process response to salt stress|GO:0009651|19210750|IMP  product interferon-related developmental regulator family protein / IFRD protein family  note SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator (InterPro:IPR007701), Interferon-related protein conserved region (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 247 Blast hits to 247 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 37; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G27760.1p  transcript_id AT1G27760.1  protein_id AT1G27760.1p  transcript_id AT1G27760.1  
At1g27760	chr1:009669120	0.0	W/9669120-9669265,9669354-9669422,9669536-9669618,9669697-9669812,9669917-9670027,9670121-9670230,9670307-9670619,9670709-9670837,9670940-9671017,9671111-9671188,9671275-9671322	AT1G27760.2 CDS  gene_syn ATSAT32, SALT-TOLERANCE 32, SAT32, T22C5.22, T22C5_22  gene SAT32  function Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.  go_function binding|GO:0005488||IEA  go_component nucleus|GO:0005634|19210750|IDA  go_component cytoplasm|GO:0005737|19210750|IDA  go_process response to salt stress|GO:0009651|19210750|IMP  product interferon-related developmental regulator family protein / IFRD protein family  note SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator (InterPro:IPR007701), Interferon-related protein conserved region (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 246 Blast hits to 246 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 37; Plants - 50; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G27760.2p  transcript_id AT1G27760.2  protein_id AT1G27760.2p  transcript_id AT1G27760.2  
At1g27770	chr1:009671912	0.0	C/9671912-9672160,9672250-9672548,9672656-9672827,9672948-9673106,9673281-9673339,9673562-9675232,9675309-9675363,9675834-9676010	AT1G27770.2 CDS  gene_syn ACA1, AUTO-INHIBITED CA2+-ATPASE 1, CA2+-ATPASE, PEA1, PLASTID ENVELOPE ATPASE 1, T22C5.23, T22C5_23  gene ACA1  function Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|8234257|IDA  go_component chloroplast inner membrane|GO:0009706|9009223|TAS  go_function calcium channel activity|GO:0005262|9009223|TAS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|8234257|ISS  go_function calcium-transporting ATPase activity|GO:0005388|9009223|TAS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  product ACA1 (AUTO-INHIBITED CA2+-ATPASE 1); calcium channel/ calcium-transporting ATPase/ calmodulin binding  note AUTO-INHIBITED CA2+-ATPASE 1 (ACA1); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity, calcium channel activity; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type cation exchange, alpha subunit (InterPro:IPR006069), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: ACA2 (CALCIUM ATPASE 2); calcium ion transmembrane transporter/ calcium-transporting ATPase/ calmodulin binding (TAIR:AT4G37640.1); Has 27853 Blast hits to 19000 proteins in 1822 species: Archae - 516; Bacteria - 15210; Metazoa - 4784; Fungi - 2478; Plants - 1528; Viruses - 4; Other Eukaryotes - 3333 (source: NCBI BLink).  protein_id AT1G27770.2p  transcript_id AT1G27770.2  protein_id AT1G27770.2p  transcript_id AT1G27770.2  
At1g27770	chr1:009671912	0.0	C/9671912-9672160,9672250-9672548,9672656-9672827,9672948-9673106,9673281-9675232,9675309-9675363,9675834-9676010	AT1G27770.1 CDS  gene_syn ACA1, AUTO-INHIBITED CA2+-ATPASE 1, CA2+-ATPASE, PEA1, PLASTID ENVELOPE ATPASE 1, T22C5.23, T22C5_23  gene ACA1  function Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.  go_component plasma membrane|GO:0005886|17317660|IDA  go_process ATP biosynthetic process|GO:0006754||IEA  go_process cation transport|GO:0006812||IEA  go_process calcium ion transport|GO:0006816||IEA  go_process metabolic process|GO:0008152||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component chloroplast inner membrane|GO:0009706|8234257|IDA  go_component chloroplast inner membrane|GO:0009706|9009223|TAS  go_function calcium channel activity|GO:0005262|9009223|TAS  go_function calcium-transporting ATPase activity|GO:0005388|12805592|ISS  go_function calcium-transporting ATPase activity|GO:0005388|8234257|ISS  go_function calcium-transporting ATPase activity|GO:0005388|9009223|TAS  go_function calcium-transporting ATPase activity|GO:0005388||ISS  go_function calmodulin binding|GO:0005516|11782485|TAS  product ACA1 (AUTO-INHIBITED CA2+-ATPASE 1); calcium channel/ calcium-transporting ATPase/ calmodulin binding  note AUTO-INHIBITED CA2+-ATPASE 1 (ACA1); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity, calcium channel activity; INVOLVED IN: cation transport, calcium ion transport, metabolic process, ATP biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ACA2 (CALCIUM ATPASE 2); calcium ion transmembrane transporter/ calcium-transporting ATPase/ calmodulin binding (TAIR:AT4G37640.1); Has 26568 Blast hits to 19800 proteins in 1903 species: Archae - 546; Bacteria - 16430; Metazoa - 3450; Fungi - 1790; Plants - 1179; Viruses - 3; Other Eukaryotes - 3170 (source: NCBI BLink).  protein_id AT1G27770.1p  transcript_id AT1G27770.1  protein_id AT1G27770.1p  transcript_id AT1G27770.1  
At1g27780	chr1:009677043	0.0	W/9677043-9682982	AT1G27780.1 mRNA_TE_gene  pseudo  gene_syn T22C5.24, T22C5_24  note Transposable element gene, similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34740.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075)  
At1g27790	chr1:009683681	0.0	W/9683681-9684043	AT1G27790.1 mRNA_TE_gene  pseudo  gene_syn T22C5.25, T22C5_25  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24380.1)  
At1g27800	chr1:009684838	0.0	W/9684838-9685473	AT1G27800.1 mRNA_TE_gene  pseudo  gene_syn T22C5.26, T22C5_26  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24370.1); contains domain Hedgehog/intein (Hint) domain (SSF51294)  
At1g27810	chr1:009686068	0.0	C/9686068-9687016	AT1G27810.1 mRNA_TE_gene  pseudo  gene_syn T22C5.27, T22C5_27  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34710.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD33040.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)  
At1g27815	chr1:009687757	0.0	C/9687757-9690536	AT1G27815.1 mRNA_TE_gene  pseudo  gene_syn T22C5.31  note Transposable element gene, Mutator-like transposase family, has a 3.0e-77 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g27820	chr1:009691628	0.0	W/9691628-9692560	AT1G27820.1 CDS  gene_syn T22C5.28, T22C5_28  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT1G27890.1); Has 612 Blast hits to 611 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 93; Plants - 208; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G27820.1p  transcript_id AT1G27820.1  protein_id AT1G27820.1p  transcript_id AT1G27820.1  
At1g27840	chr1:009693332	0.0	C/9693332-9693376,9693484-9693555,9693665-9693754,9693839-9693996,9694636-9694873,9695131-9695312,9695482-9695641,9695721-9695981,9696108-9696257	AT1G27840.3 CDS  gene_syn ATCSA-1, F28L5.15, F28L5_15  gene ATCSA-1  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note ATCSA-1; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G19750.1); Has 20142 Blast hits to 11900 proteins in 449 species: Archae - 22; Bacteria - 3120; Metazoa - 8347; Fungi - 4311; Plants - 1805; Viruses - 0; Other Eukaryotes - 2537 (source: NCBI BLink).  protein_id AT1G27840.3p  transcript_id AT1G27840.3  protein_id AT1G27840.3p  transcript_id AT1G27840.3  
At1g27840	chr1:009693332	0.0	C/9693332-9693376,9693484-9693555,9693665-9693754,9693842-9693996,9694636-9694873,9695131-9695312,9695482-9695641,9695721-9695981,9696108-9696257	AT1G27840.1 CDS  gene_syn ATCSA-1, F28L5.15, F28L5_15  gene ATCSA-1  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note ATCSA-1; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G19750.1); Has 21032 Blast hits to 12158 proteins in 463 species: Archae - 20; Bacteria - 3314; Metazoa - 8659; Fungi - 4484; Plants - 1886; Viruses - 0; Other Eukaryotes - 2669 (source: NCBI BLink).  protein_id AT1G27840.1p  transcript_id AT1G27840.1  protein_id AT1G27840.1p  transcript_id AT1G27840.1  
At1g27840	chr1:009693332	0.0	C/9693332-9693376,9693484-9693555,9693665-9693754,9693842-9693996,9694636-9694873,9695131-9695312,9695482-9695641,9695892-9695981,9696108-9696257	AT1G27840.2 CDS  gene_syn ATCSA-1, F28L5.15, F28L5_15  gene ATCSA-1  go_component heterotrimeric G-protein complex|GO:0005834||ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note ATCSA-1; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G19750.1); Has 14855 Blast hits to 9266 proteins in 415 species: Archae - 20; Bacteria - 2927; Metazoa - 5817; Fungi - 3166; Plants - 1114; Viruses - 0; Other Eukaryotes - 1811 (source: NCBI BLink).  protein_id AT1G27840.2p  transcript_id AT1G27840.2  protein_id AT1G27840.2p  transcript_id AT1G27840.2  
At1g27850	chr1:009699265	0.0	W/9699265-9699460,9699595-9699691,9699976-9700093,9700193-9700924,9701279-9703133,9703253-9703701	AT1G27850.1 CDS  gene_syn F28L5.11, F28L5_11  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 8415 Blast hits to 4570 proteins in 368 species: Archae - 6; Bacteria - 562; Metazoa - 3384; Fungi - 1377; Plants - 412; Viruses - 128; Other Eukaryotes - 2546 (source: NCBI BLink).  protein_id AT1G27850.1p  transcript_id AT1G27850.1  protein_id AT1G27850.1p  transcript_id AT1G27850.1  
At1g27860	chr1:009704558	0.0	C/9704558-9704883,9704981-9705065,9705152-9705234,9705378-9705570,9705718-9705813,9706152-9706238	AT1G27860.1 CDS  gene_syn F28L5.13, F28L5_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28500.1); Has 73 Blast hits to 72 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27860.1p  transcript_id AT1G27860.1  protein_id AT1G27860.1p  transcript_id AT1G27860.1  
At1g27870	chr1:009706657	0.0	C/9706657-9707298	AT1G27870.1 CDS  gene_syn F28L5.12, F28L5_12  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (TAIR:AT2G33160.1); Has 220 Blast hits to 220 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G27870.1p  transcript_id AT1G27870.1  protein_id AT1G27870.1p  transcript_id AT1G27870.1  
At1g27880	chr1:009708940	0.0	W/9708940-9709965,9710061-9710114,9710261-9710373,9710478-9710693,9710770-9710848,9710966-9711019,9711101-9711175,9711293-9711346,9711444-9711488,9711575-9711669,9711755-9711884,9712026-9712124,9712244-9712299,9712397-9712499,9712947-9713075,9713161-9713330,9713484-9713508,9713601-9713716,9713805-9713901	AT1G27880.1 CDS  gene_syn F28L5.4, F28L5_4  go_process DNA recombination|GO:0006310||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_function ATP binding|GO:0005524||ISS  go_function ATP-dependent helicase activity|GO:0008026||ISS  product ATP-dependent DNA helicase, putative  note ATP-dependent DNA helicase, putative; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RecQl3; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT4G35740.1); Has 27945 Blast hits to 25738 proteins in 1743 species: Archae - 467; Bacteria - 11299; Metazoa - 4755; Fungi - 3174; Plants - 2751; Viruses - 586; Other Eukaryotes - 4913 (source: NCBI BLink).  protein_id AT1G27880.1p  transcript_id AT1G27880.1  protein_id AT1G27880.1p  transcript_id AT1G27880.1  
At1g27890	chr1:009714136	0.0	C/9714136-9715044	AT1G27890.1 CDS  gene_syn F28L5.5  go_component nucleus|GO:0005634||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process RNA modification|GO:0009451||ISS  go_function ribonuclease activity|GO:0004540||ISS  product CCR4-NOT transcription complex protein, putative  note CCR4-NOT transcription complex protein, putative; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: CCR4-NOT transcription complex protein, putative (TAIR:AT1G27820.1); Has 609 Blast hits to 608 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 91; Plants - 207; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).  protein_id AT1G27890.1p  transcript_id AT1G27890.1  protein_id AT1G27890.1p  transcript_id AT1G27890.1  
At1g27900	chr1:009715615	0.0	C/9715615-9715762,9715871-9716046,9716179-9716339,9716538-9716607,9716957-9717107,9717221-9717344,9717428-9717520,9717696-9717910,9718221-9718307,9718861-9718952,9719073-9719189,9719282-9719334,9719456-9719673,9719752-9719856,9719949-9720041,9720147-9720346	AT1G27900.1 CDS  gene_syn F13K9.28, F13K9_28  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATP-dependent RNA helicase activity|GO:0004004||ISS  product RNA helicase, putative  note RNA helicase, putative; FUNCTIONS IN: in 7 functions; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated region (InterPro:IPR007502), ATPase, AAA+ type, core (InterPro:IPR003593), Region of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 7578 Blast hits to 6938 proteins in 1088 species: Archae - 21; Bacteria - 1966; Metazoa - 2049; Fungi - 827; Plants - 376; Viruses - 892; Other Eukaryotes - 1447 (source: NCBI BLink).  protein_id AT1G27900.1p  transcript_id AT1G27900.1  protein_id AT1G27900.1p  transcript_id AT1G27900.1  
At1g27910	chr1:009720962	0.0	C/9720962-9721766,9721982-9723138,9723277-9723384,9723478-9723663,9723925-9723975	AT1G27910.1 CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 45, ATPUB45, F13K9.2, F13K9_2, PLANT U-BOX 45, PUB45  gene PUB45  function Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process protein ubiquitination|GO:0016567|14657406|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|14657406|IDA  product PUB45 (PLANT U-BOX 45); ubiquitin-protein ligase  note PLANT U-BOX 45 (PUB45); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing family protein (TAIR:AT1G24330.1); Has 1566 Blast hits to 1534 proteins in 151 species: Archae - 0; Bacteria - 17; Metazoa - 172; Fungi - 102; Plants - 1098; Viruses - 3; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT1G27910.1p  transcript_id AT1G27910.1  protein_id AT1G27910.1p  transcript_id AT1G27910.1  
At1g27920	chr1:009726948	0.0	W/9726948-9726982,9727068-9727206,9727293-9727496,9727616-9727873,9727995-9728207,9728365-9728520,9728615-9728771,9728860-9729011,9729093-9729180,9729293-9729366,9729452-9729526,9729621-9729848	AT1G27920.1 CDS  gene_syn F13K9.3, F13K9_3, MAP65-8, MICROTUBULE-ASSOCIATED PROTEIN 65-8  gene MAP65-8  go_component spindle|GO:0005819|15469496|IDA  go_component microtubule|GO:0005874|15469496|IDA  go_component microtubule|GO:0005874|19060108|IDA  go_component phragmoplast|GO:0009524|15469496|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8)  note MICROTUBULE-ASSOCIATED PROTEIN 65-8 (MAP65-8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: microtubule, spindle, phragmoplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MAP65/ASE1 (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1); microtubule binding (TAIR:AT5G55230.1); Has 1540 Blast hits to 1393 proteins in 223 species: Archae - 23; Bacteria - 114; Metazoa - 607; Fungi - 143; Plants - 166; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink).  protein_id AT1G27920.1p  transcript_id AT1G27920.1  protein_id AT1G27920.1p  transcript_id AT1G27920.1  
At1g27921	chr1:009728124	0.0	C/9728124-9730331	AT1G27921.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G27920  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G27921.1  
At1g27930	chr1:009731510	0.0	C/9731510-9732379	AT1G27930.1 CDS  gene_syn F13K9.4, F13K9_4  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579, plant (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67330.1); Has 160 Blast hits to 160 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G27930.1p  transcript_id AT1G27930.1  protein_id AT1G27930.1p  transcript_id AT1G27930.1  
At1g27940	chr1:009733597	0.0	C/9733597-9734802,9734882-9735123,9735227-9736010,9736088-9736628,9736699-9736958,9737149-9737349,9737421-9737596,9737692-9737746,9737857-9738129	AT1G27940.1 CDS  gene_syn F13K9.5, F13K9_5, P-GLYCOPROTEIN 13, PGP13  gene PGP13  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP13 (P-GLYCOPROTEIN 13); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 13 (PGP13); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP14 (P-GLYCOPROTEIN 14); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G28010.1); Has 508756 Blast hits to 236838 proteins in 2688 species: Archae - 8902; Bacteria - 338884; Metazoa - 15520; Fungi - 8253; Plants - 4460; Viruses - 60; Other Eukaryotes - 132677 (source: NCBI BLink).  protein_id AT1G27940.1p  transcript_id AT1G27940.1  protein_id AT1G27940.1p  transcript_id AT1G27940.1  
At1g27950	chr1:009740740	0.0	W/9740740-9741091,9741762-9741991	AT1G27950.1 CDS  gene_syn F13K9.6, F13K9_6, GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1, LTPG1  gene LTPG1  function Encodes LTPG1, a lipid transfer protein with a predicted GPI (glycosylphosphatidylinositol)-anchor domain. Localized in the plasma membrane. Disruption of the LTPG1 gene causes alterations of cuticular lipid composition, but no significant changes on total wax and cutin monomer loads are seen.  go_component plasma membrane|GO:0005886|17644812|IDA  go_component anchored to plasma membrane|GO:0046658|12805588|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_component plasma membrane|GO:0005886|19321705|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process lipid transport|GO:0006869|19321705|IMP  go_function molecular_function|GO:0003674||ND  product LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1)  note GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1 (LTPG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) (TAIR:AT2G44290.1); Has 342 Blast hits to 338 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 342; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27950.1p  transcript_id AT1G27950.1  protein_id AT1G27950.1p  transcript_id AT1G27950.1  
At1g27960	chr1:009742359	0.0	C/9742359-9742616,9742975-9743187,9743480-9743968,9744058-9744498,9744601-9744662,9745127-9745184,9745263-9745309,9745597-9745648	AT1G27960.1 CDS  gene_syn ECT9, F13K9.7, F13K9_7, evolutionarily conserved C-terminal region 9  gene ECT9  function encodes a protein whose C-terminal region is similar to ECT1 and ECT2, which bind to CIPK1.  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product ECT9 (evolutionarily conserved C-terminal region 9)  note evolutionarily conserved C-terminal region 9 (ECT9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13060.2); Has 697 Blast hits to 696 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 86; Plants - 188; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).  protein_id AT1G27960.1p  transcript_id AT1G27960.1  protein_id AT1G27960.1p  transcript_id AT1G27960.1  
At1g27970	chr1:009746921	0.0	W/9746921-9747226,9747713-9747771,9748267-9748306	AT1G27970.2 CDS  gene_syn F13K9.26, F13K9_26, NTF2B, NUCLEAR TRANSPORT FACTOR 2B  gene NTF2B  function Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634||ISS  go_component nuclear envelope|GO:0005635|16428596|IDA  go_process protein import into nucleus|GO:0006606|16428596|IGI  go_process protein import into nucleus|GO:0006606||ISS  go_process nucleocytoplasmic transport|GO:0006913|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IPI  go_function protein transporter activity|GO:0008565||ISS  product NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter  note NUCLEAR TRANSPORT FACTOR 2B (NTF2B); FUNCTIONS IN: protein transporter activity, Ran GTPase binding; INVOLVED IN: nucleocytoplasmic transport, protein import into nucleus; LOCATED IN: nuclear envelope, nucleus, intracellular, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter (TAIR:AT1G27310.1); Has 690 Blast hits to 690 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 363; Fungi - 150; Plants - 115; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).  protein_id AT1G27970.2p  transcript_id AT1G27970.2  protein_id AT1G27970.2p  transcript_id AT1G27970.2  
At1g27970	chr1:009746921	0.0	W/9746921-9747226,9747713-9747787	AT1G27970.1 CDS  gene_syn F13K9.26, F13K9_26, NTF2B, NUCLEAR TRANSPORT FACTOR 2B  gene NTF2B  function Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component intracellular|GO:0005622||ISS  go_component nucleus|GO:0005634||ISS  go_component nuclear envelope|GO:0005635|16428596|IDA  go_process protein import into nucleus|GO:0006606|16428596|IGI  go_process protein import into nucleus|GO:0006606||ISS  go_process nucleocytoplasmic transport|GO:0006913|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IGI  go_function Ran GTPase binding|GO:0008536|16428596|IPI  go_function protein transporter activity|GO:0008565||ISS  product NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter  note NUCLEAR TRANSPORT FACTOR 2B (NTF2B); FUNCTIONS IN: protein transporter activity, Ran GTPase binding; INVOLVED IN: nucleocytoplasmic transport, protein import into nucleus; LOCATED IN: nuclear envelope, nucleus, intracellular, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222); BEST Arabidopsis thaliana protein match is: NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter (TAIR:AT1G27310.1); Has 753 Blast hits to 753 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 414; Fungi - 156; Plants - 116; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).  protein_id AT1G27970.1p  transcript_id AT1G27970.1  protein_id AT1G27970.1p  transcript_id AT1G27970.1  
At1g27980	chr1:009748812	0.0	W/9748812-9749023,9749128-9749173,9749573-9749724,9749833-9749892,9750021-9750245,9750332-9750473,9750681-9750731,9750833-9750924,9751205-9751331,9751640-9751655,9751740-9751847,9751943-9751997,9752075-9752221,9752315-9752393,9752496-9752618	AT1G27980.1 CDS  gene_syn DPL1, F13K9.8, F13K9_8  gene DPL1  go_component membrane|GO:0016020|17432890|IDA  go_function catalytic activity|GO:0003824||IEA  go_function carboxy-lyase activity|GO:0016831||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component endoplasmic reticulum|GO:0005783|17635905|IDA  go_component endoplasmic reticulum|GO:0005783|18643979|IDA  go_process amino acid metabolic process|GO:0006520||ISS  go_process sphingolipid catabolic process|GO:0030149|17635905|IMP  go_function carboxy-lyase activity|GO:0016831||ISS  product DPL1; carboxy-lyase/ catalytic/ pyridoxal phosphate binding  note DPL1; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: amino acid metabolic process, sphingolipid catabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: GAD5 (glutamate decarboxylase 5); calmodulin binding (TAIR:AT3G17760.2); Has 3835 Blast hits to 3826 proteins in 964 species: Archae - 162; Bacteria - 2428; Metazoa - 269; Fungi - 314; Plants - 180; Viruses - 3; Other Eukaryotes - 479 (source: NCBI BLink).  protein_id AT1G27980.1p  transcript_id AT1G27980.1  protein_id AT1G27980.1p  transcript_id AT1G27980.1  
At1g27990	chr1:009752799	0.0	C/9752799-9753008,9753101-9753389,9753603-9753919	AT1G27990.1 CDS  gene_syn F13K9.9, F13K9_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 43 Blast hits to 43 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G27990.1p  transcript_id AT1G27990.1  protein_id AT1G27990.1p  transcript_id AT1G27990.1  
At1g28000	chr1:009756674	0.0	C/9756674-9757582,9757690-9757947	AT1G28000.1 CDS  gene_syn F13K9.10, F13K9_10  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G28020.1); Has 219 Blast hits to 213 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G28000.1p  transcript_id AT1G28000.1  protein_id AT1G28000.1p  transcript_id AT1G28000.1  
At1g28002	chr1:009759212	0.0	W/9759212-9760165	AT1G28002.1 pseudogenic_transcript  pseudo  function Pseudogene of AT5G27260; Homeodomain-like protein  
At1g28007	chr1:009762024	0.0	W/9762024-9762209	AT1G28007.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G28007.1p  transcript_id AT1G28007.1  protein_id AT1G28007.1p  transcript_id AT1G28007.1  
At1g28010	chr1:009763436	0.0	W/9763436-9763711,9763790-9763844,9763930-9764105,9764177-9764377,9764566-9764825,9764906-9765446,9765524-9766310,9766392-9766633,9766712-9767917	AT1G28010.1 CDS  gene_syn F13K9.11, F13K9_11, P-GLYCOPROTEIN 14, PGP14  gene PGP14  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product PGP14 (P-GLYCOPROTEIN 14); ATPase, coupled to transmembrane movement of substances  note P-GLYCOPROTEIN 14 (PGP14); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: PGP13 (P-GLYCOPROTEIN 13); ATPase, coupled to transmembrane movement of substances (TAIR:AT1G27940.1); Has 510596 Blast hits to 237604 proteins in 2691 species: Archae - 8934; Bacteria - 339970; Metazoa - 15820; Fungi - 8089; Plants - 4531; Viruses - 46; Other Eukaryotes - 133206 (source: NCBI BLink).  protein_id AT1G28010.1p  transcript_id AT1G28010.1  protein_id AT1G28010.1p  transcript_id AT1G28010.1  
At1g28020	chr1:009768395	0.0	C/9768395-9768636,9768722-9768859,9768949-9770140,9770228-9770377,9771041-9771157	AT1G28020.1 CDS  gene_syn F13K9.12, F13K9_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G11380.1); Has 1079 Blast hits to 755 proteins in 35 species: Archae - 0; Bacteria - 16; Metazoa - 6; Fungi - 0; Plants - 1030; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G28020.1p  transcript_id AT1G28020.1  protein_id AT1G28020.1p  transcript_id AT1G28020.1  
At1g28030	chr1:009771793	0.0	W/9771793-9772175,9772661-9772997,9773097-9773345	AT1G28030.1 CDS  gene_syn F13K9.13, F13K9_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function 2-oxoglutarate-dependent dioxygenase activity|GO:0010302|16299181|ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase, putative (TAIR:AT1G52820.1); Has 3261 Blast hits to 3218 proteins in 419 species: Archae - 0; Bacteria - 190; Metazoa - 24; Fungi - 183; Plants - 2531; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).  protein_id AT1G28030.1p  transcript_id AT1G28030.1  protein_id AT1G28030.1p  transcript_id AT1G28030.1  
At1g28040	chr1:009773580	0.0	C/9773580-9773992,9774424-9774910	AT1G28040.1 CDS  gene_syn F13K9.14, F13K9_14  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function protein binding|GO:0005515||ISS  go_function zinc ion binding|GO:0008270||ISS  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G46495.1); Has 5552 Blast hits to 5534 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 1700; Fungi - 326; Plants - 2667; Viruses - 19; Other Eukaryotes - 840 (source: NCBI BLink).  protein_id AT1G28040.1p  transcript_id AT1G28040.1  protein_id AT1G28040.1p  transcript_id AT1G28040.1  
At1g28050	chr1:009775768	0.0	C/9775768-9775870,9775984-9776228,9776513-9776680,9776872-9777657	AT1G28050.1 CDS  gene_syn F13K9.15, F13K9_15  go_component intracellular|GO:0005622||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc finger (B-box type) family protein  note zinc finger (B-box type) family protein; FUNCTIONS IN: transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: zinc finger (B-box type) family protein (TAIR:AT2G33500.2); Has 1872 Blast hits to 1279 proteins in 90 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1798; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).  protein_id AT1G28050.1p  transcript_id AT1G28050.1  protein_id AT1G28050.1p  transcript_id AT1G28050.1  
At1g28060	chr1:009779167	0.0	W/9779167-9779643,9779757-9780038,9780130-9780507,9780590-9780784,9780882-9781036,9781613-9782486	AT1G28060.1 CDS  gene_syn F13K9.16, F13K9_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product small nuclear ribonucleoprotein family protein / snRNP family protein  note small nuclear ribonucleoprotein family protein / snRNP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: RNA splicing factor-related (TAIR:AT3G55930.1); Has 21413 Blast hits to 11192 proteins in 554 species: Archae - 18; Bacteria - 874; Metazoa - 11490; Fungi - 2755; Plants - 1540; Viruses - 94; Other Eukaryotes - 4642 (source: NCBI BLink).  protein_id AT1G28060.1p  transcript_id AT1G28060.1  protein_id AT1G28060.1p  transcript_id AT1G28060.1  
At1g28070	chr1:009783082	0.0	W/9783082-9783264,9783517-9783864	AT1G28070.1 CDS  gene_syn F13K9.17, F13K9_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT2G33510.1); Has 40 Blast hits to 35 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28070.1p  transcript_id AT1G28070.1  protein_id AT1G28070.1p  transcript_id AT1G28070.1  
At1g28080	chr1:009789826	0.0	W/9789826-9790565,9790674-9790724,9790834-9790918	AT1G28080.1 CDS  gene_syn F13K9.18, F13K9_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13250.1); Has 60 Blast hits to 60 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28080.1p  transcript_id AT1G28080.1  protein_id AT1G28080.1p  transcript_id AT1G28080.1  
At1g28090	chr1:009795826	0.0	W/9795826-9795948,9796060-9796135,9796246-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9797975-9798034,9798142-9798203,9798282-9798603,9798694-9798891	AT1G28090.1 CDS  gene_syn F13K9.19, F13K9_19  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product polynucleotide adenylyltransferase family protein  note polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 6227 Blast hits to 6223 proteins in 1431 species: Archae - 2; Bacteria - 3614; Metazoa - 116; Fungi - 173; Plants - 58; Viruses - 8; Other Eukaryotes - 2256 (source: NCBI BLink).  protein_id AT1G28090.1p  transcript_id AT1G28090.1  protein_id AT1G28090.1p  transcript_id AT1G28090.1  
At1g28090	chr1:009796045	0.0	W/9796045-9796135,9796246-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9797975-9798034,9798142-9798203,9798282-9798603,9798694-9798891	AT1G28090.2 CDS  gene_syn F13K9.19, F13K9_19  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product polynucleotide adenylyltransferase family protein  note polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 6227 Blast hits to 6223 proteins in 1431 species: Archae - 2; Bacteria - 3614; Metazoa - 116; Fungi - 173; Plants - 58; Viruses - 8; Other Eukaryotes - 2256 (source: NCBI BLink).  protein_id AT1G28090.2p  transcript_id AT1G28090.2  protein_id AT1G28090.2p  transcript_id AT1G28090.2  
At1g28090	chr1:009796236	0.0	W/9796236-9796380,9796626-9796723,9796836-9796919,9797034-9797164,9797257-9797329,9797426-9797471,9797569-9797678,9797776-9797883,9797975-9798034,9798142-9798203,9798282-9798603,9798694-9798891	AT1G28090.3 CDS  gene_syn F13K9.19, F13K9_19  go_process RNA processing|GO:0006396||IEA  go_function RNA binding|GO:0003723||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  go_component cellular_component|GO:0005575||ND  go_process RNA processing|GO:0006396||ISS  go_function RNA binding|GO:0003723||ISS  product polynucleotide adenylyltransferase family protein  note polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotide adenylyltransferase region (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 6227 Blast hits to 6223 proteins in 1431 species: Archae - 2; Bacteria - 3614; Metazoa - 116; Fungi - 173; Plants - 58; Viruses - 8; Other Eukaryotes - 2256 (source: NCBI BLink).  protein_id AT1G28090.3p  transcript_id AT1G28090.3  protein_id AT1G28090.3p  transcript_id AT1G28090.3  
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803676,9803771-9803775	AT1G28100.5 CDS  gene_syn F13K9.27, F13K9_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 19 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28100.5p  transcript_id AT1G28100.5  protein_id AT1G28100.5p  transcript_id AT1G28100.5  
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.1 CDS  gene_syn F13K9.27, F13K9_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 19 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28100.1p  transcript_id AT1G28100.1  protein_id AT1G28100.1p  transcript_id AT1G28100.1  
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.2 CDS  gene_syn F13K9.27, F13K9_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 19 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28100.2p  transcript_id AT1G28100.2  protein_id AT1G28100.2p  transcript_id AT1G28100.2  
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802954,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.3 CDS  gene_syn F13K9.27, F13K9_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 19 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28100.3p  transcript_id AT1G28100.3  protein_id AT1G28100.3p  transcript_id AT1G28100.3  
At1g28100	chr1:009802120	0.0	W/9802120-9802184,9802268-9802351,9802437-9802500,9802575-9802621,9802764-9802818,9802916-9802978,9803207-9803375,9803489-9803546,9803624-9803680,9803771-9803981	AT1G28100.4 CDS  gene_syn F13K9.27, F13K9_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 19 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 4; Plants - 23; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28100.4p  transcript_id AT1G28100.4  protein_id AT1G28100.4p  transcript_id AT1G28100.4  
At1g28110	chr1:009804153	0.0	C/9804153-9804302,9804382-9804499,9804577-9804669,9804771-9804895,9804990-9805271,9805347-9805426,9805517-9805609,9806215-9806310,9806394-9806495,9806586-9806832	AT1G28110.1 CDS  gene_syn F13K9.20, F13K9_20, SCPL45, SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR  gene SCPL45  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR); serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl46 (serine carboxypeptidase-like 46); serine-type carboxypeptidase (TAIR:AT2G33530.1); Has 2581 Blast hits to 2531 proteins in 335 species: Archae - 0; Bacteria - 249; Metazoa - 573; Fungi - 560; Plants - 874; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT1G28110.1p  transcript_id AT1G28110.1  protein_id AT1G28110.1p  transcript_id AT1G28110.1  
At1g28110	chr1:009804153	0.0	C/9804153-9804302,9804382-9804499,9804577-9804669,9804771-9804895,9804990-9805271,9805347-9805426,9805517-9805609,9806215-9806310,9806394-9806495,9806586-9806832	AT1G28110.2 CDS  gene_syn F13K9.20, F13K9_20, SCPL45, SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR  gene SCPL45  go_process proteolysis|GO:0006508||IEA  go_function serine-type carboxypeptidase activity|GO:0004185||IEA  go_component plant-type cell wall|GO:0009505|16287169|IDA  go_process proteolysis|GO:0006508||ISS  go_function serine-type carboxypeptidase activity|GO:0004185||ISS  product SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR); serine-type carboxypeptidase  note SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: scpl46 (serine carboxypeptidase-like 46); serine-type carboxypeptidase (TAIR:AT2G33530.1); Has 2581 Blast hits to 2531 proteins in 335 species: Archae - 0; Bacteria - 249; Metazoa - 573; Fungi - 560; Plants - 874; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).  protein_id AT1G28110.2p  transcript_id AT1G28110.2  protein_id AT1G28110.2p  transcript_id AT1G28110.2  
At1g28120	chr1:009813219	0.0	C/9813219-9813242,9813325-9813588,9813853-9813953,9814027-9814076,9814223-9814275,9814373-9814495,9814629-9814712,9814792-9814857,9814988-9815143	AT1G28120.1 CDS  gene_syn F13K9.21, F13K9_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin thioesterase Otubain (InterPro:IPR016615), Ovarian tumour, otubain (InterPro:IPR003323); Has 295 Blast hits to 295 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 50; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G28120.1p  transcript_id AT1G28120.1  protein_id AT1G28120.1p  transcript_id AT1G28120.1  
At1g28130	chr1:009825431	0.0	W/9825431-9825726,9825836-9825937,9826348-9827189,9827294-9827883	AT1G28130.1 CDS  gene_syn F3H9.21, F3H9_21, GH3.17  gene GH3.17  function encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to auxin stimulus|GO:0009733|15659623|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process auxin homeostasis|GO:0010252|15659623|TAS  go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA  product GH3.17; indole-3-acetic acid amido synthetase  note GH3.17; FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: DFL1 (DWARF IN LIGHT 1); indole-3-acetic acid amido synthetase (TAIR:AT5G54510.1); Has 668 Blast hits to 628 proteins in 114 species: Archae - 0; Bacteria - 210; Metazoa - 51; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).  protein_id AT1G28130.1p  transcript_id AT1G28130.1  protein_id AT1G28130.1p  transcript_id AT1G28130.1  
At1g28130	chr1:009826379	0.0	W/9826379-9827189,9827294-9827883	AT1G28130.2 CDS  gene_syn F3H9.21, F3H9_21, GH3.17  gene GH3.17  function encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_process response to auxin stimulus|GO:0009733|15659623|IMP  go_process response to auxin stimulus|GO:0009733||ISS  go_process auxin homeostasis|GO:0010252|15659623|TAS  go_function indole-3-acetic acid amido synthetase activity|GO:0010279|15659623|IDA  product GH3.17; indole-3-acetic acid amido synthetase  note GH3.17; FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: DFL1 (DWARF IN LIGHT 1); indole-3-acetic acid amido synthetase (TAIR:AT5G54510.1); Has 480 Blast hits to 479 proteins in 102 species: Archae - 0; Bacteria - 141; Metazoa - 49; Fungi - 2; Plants - 214; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).  protein_id AT1G28130.2p  transcript_id AT1G28130.2  protein_id AT1G28130.2p  transcript_id AT1G28130.2  
At1g28135	chr1:009829332	0.0	W/9829332-9829487	AT1G28135.1 CDS  gene_syn F3H9.27, F3H9_27  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 7 Blast hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28135.1p  transcript_id AT1G28135.1  protein_id AT1G28135.1p  transcript_id AT1G28135.1  
At1g28140	chr1:009833029	0.0	C/9833029-9833127,9833247-9833345,9833512-9833582,9833660-9834023,9834181-9834390	AT1G28140.1 CDS  gene_syn F3H9.20, F3H9_20  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 111 Blast hits to 111 proteins in 58 species: Archae - 0; Bacteria - 74; Metazoa - 7; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G28140.1p  transcript_id AT1G28140.1  protein_id AT1G28140.1p  transcript_id AT1G28140.1  
At1g28150	chr1:009835122	0.0	C/9835122-9835304,9835567-9835683,9835771-9835842	AT1G28150.1 CDS  gene_syn F13K9.24  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 65 Blast hits to 65 proteins in 30 species: Archae - 0; Bacteria - 43; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28150.1p  transcript_id AT1G28150.1  protein_id AT1G28150.1p  transcript_id AT1G28150.1  
At1g28160	chr1:009839387	0.0	W/9839387-9840124	AT1G28160.1 CDS  gene_syn F3H9.18, F3H9_18  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription factor activity|GO:0003700||ISS  product ethylene-responsive element-binding family protein  note ethylene-responsive element-binding family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: LEP (LEAFY PETIOLE); DNA binding / transcription factor (TAIR:AT5G13910.1); Has 3566 Blast hits to 3532 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3509; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G28160.1p  transcript_id AT1G28160.1  protein_id AT1G28160.1p  transcript_id AT1G28160.1  
At1g28170	chr1:009841332	0.0	W/9841332-9842312	AT1G28170.1 CDS  gene_syn F3H9.17, F3H9_17  go_function sulfotransferase activity|GO:0008146||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function sulfotransferase activity|GO:0008146||ISS  product sulfotransferase family protein  note sulfotransferase family protein; FUNCTIONS IN: sulfotransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sulfotransferase (InterPro:IPR000863); BEST Arabidopsis thaliana protein match is: ST4B (SULFOTRANSFERASE 4B); brassinosteroid sulfotransferase/ sulfotransferase (TAIR:AT1G13420.1); Has 2219 Blast hits to 2182 proteins in 146 species: Archae - 0; Bacteria - 149; Metazoa - 1447; Fungi - 1; Plants - 307; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).  protein_id AT1G28170.1p  transcript_id AT1G28170.1  protein_id AT1G28170.1p  transcript_id AT1G28170.1  
At1g28180	chr1:009843084	0.0	C/9843084-9844234,9844309-9845002	AT1G28180.1 CDS  gene_syn F3H9.16  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase, putative (TAIR:AT2G33730.1).  protein_id AT1G28180.1p  transcript_id AT1G28180.1  protein_id AT1G28180.1p  transcript_id AT1G28180.1  
At1g28190	chr1:009847015	0.0	C/9847015-9847815	AT1G28190.1 CDS  gene_syn F3H9.15, F3H9_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 113 Blast hits to 106 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 25; Fungi - 5; Plants - 61; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G28190.1p  transcript_id AT1G28190.1  protein_id AT1G28190.1p  transcript_id AT1G28190.1  
At1g28200	chr1:009850395	0.0	C/9850395-9850574,9851204-9851475,9851888-9851989,9852075-9852300	AT1G28200.1 CDS  gene_syn F3H9.14, F3H9_14, FH INTERACTING PROTEIN 1, FIP1  gene FIP1  function VirF-interacting protein FIP1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product FIP1 (FH INTERACTING PROTEIN 1)  note FH INTERACTING PROTEIN 1 (FIP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GEM (GL2-EXPRESSION MODULATOR) (TAIR:AT2G22475.1); Has 254 Blast hits to 249 proteins in 32 species: Archae - 4; Bacteria - 11; Metazoa - 9; Fungi - 13; Plants - 204; Viruses - 1; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G28200.1p  transcript_id AT1G28200.1  protein_id AT1G28200.1p  transcript_id AT1G28200.1  
At1g28210	chr1:009854598	0.0	W/9854598-9854615,9854736-9854793,9855214-9855255,9855349-9855440,9855565-9855648,9855735-9855773,9855857-9855967,9856045-9856080,9856199-9856286,9856713-9856777,9856877-9856939,9857026-9857098,9857496-9857587,9858021-9858092,9858649-9858705,9858850-9858898,9858979-9859048,9859371-9859460,9859857-9859884	AT1G28210.1 CDS  gene_syn ATJ, ATJ1, F3H9.13, F3H9_13  gene ATJ1  function DnaJ homolog AtJ1 (atj)  go_process protein folding|GO:0006457||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|8790294|ISS  go_process protein folding|GO:0006457||ISS  product ATJ1; heat shock protein binding / unfolded protein binding  note ATJ1; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding (TAIR:AT5G48030.1); Has 20162 Blast hits to 19528 proteins in 2094 species: Archae - 123; Bacteria - 6102; Metazoa - 3651; Fungi - 1479; Plants - 1286; Viruses - 15; Other Eukaryotes - 7506 (source: NCBI BLink).  protein_id AT1G28210.1p  transcript_id AT1G28210.1  protein_id AT1G28210.1p  transcript_id AT1G28210.1  
At1g28210	chr1:009854598	0.0	W/9854598-9854615,9854736-9854793,9855214-9855255,9855349-9855440,9855565-9855648,9855735-9855773,9855857-9855967,9856045-9856080,9856199-9856286,9856713-9856777,9856877-9856939,9857026-9857098,9857496-9857587,9858021-9858092,9858649-9858705,9858850-9858898,9858979-9859048,9859371-9859460,9859893-9859977	AT1G28210.2 CDS  gene_syn ATJ, ATJ1, F3H9.13, F3H9_13  gene ATJ1  function DnaJ homolog AtJ1 (atj)  go_process protein folding|GO:0006457||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function heat shock protein binding|GO:0031072||IEA  go_function unfolded protein binding|GO:0051082||IEA  go_component mitochondrion|GO:0005739|8790294|ISS  go_process protein folding|GO:0006457||ISS  product ATJ1; heat shock protein binding / nucleic acid binding / unfolded protein binding / zinc ion binding  note ATJ1; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich region (InterPro:IPR001305), Zinc finger, CCHC-type (InterPro:IPR001878), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding (TAIR:AT5G48030.1); Has 20162 Blast hits to 19528 proteins in 2094 species: Archae - 123; Bacteria - 6102; Metazoa - 3651; Fungi - 1479; Plants - 1286; Viruses - 15; Other Eukaryotes - 7506 (source: NCBI BLink).  protein_id AT1G28210.2p  transcript_id AT1G28210.2  protein_id AT1G28210.2p  transcript_id AT1G28210.2  
At1g28220	chr1:009860303	0.0	C/9860303-9860668,9860745-9861434	AT1G28220.1 CDS  gene_syn ATPUP3, F3H9.12, F3H9_12  gene ATPUP3  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP3; purine transmembrane transporter  note ATPUP3; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP2; purine transmembrane transporter (TAIR:AT2G33750.2); Has 517 Blast hits to 508 proteins in 110 species: Archae - 0; Bacteria - 82; Metazoa - 82; Fungi - 2; Plants - 229; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G28220.1p  transcript_id AT1G28220.1  protein_id AT1G28220.1p  transcript_id AT1G28220.1  
At1g28230	chr1:009862200	0.0	C/9862200-9862562,9863847-9864554	AT1G28230.1 CDS  gene_syn ATPUP1, F3H9.22, F3H9_22, PUP1, PURINE PERMEASE 1  gene PUP1  function Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.  go_component integral to plasma membrane|GO:0005887|10662864|ISS  go_process purine transport|GO:0006863|12662305|IDA  go_process cytokinin transport|GO:0010184|12662305|IDA  go_function purine transmembrane transporter activity|GO:0005345|12662305|IDA  go_function purine transmembrane transporter activity|GO:0005345||ISS  go_function purine nucleoside transmembrane transporter activity|GO:0015211|12662305|IDA  product PUP1 (PURINE PERMEASE 1); purine nucleoside transmembrane transporter/ purine transmembrane transporter  note PURINE PERMEASE 1 (PUP1); FUNCTIONS IN: purine nucleoside transmembrane transporter activity, purine transmembrane transporter activity; INVOLVED IN: purine transport, cytokinin transport; LOCATED IN: integral to plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: ATPUP2; purine transmembrane transporter (TAIR:AT2G33750.2); Has 390 Blast hits to 383 proteins in 50 species: Archae - 3; Bacteria - 50; Metazoa - 10; Fungi - 8; Plants - 213; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).  protein_id AT1G28230.1p  transcript_id AT1G28230.1  protein_id AT1G28230.1p  transcript_id AT1G28230.1  
At1g28240	chr1:009868521	0.0	C/9868521-9868751,9868850-9869049,9869138-9869325,9869701-9869804,9870163-9870362,9870459-9870568,9870645-9870858,9871033-9871290,9871558-9871798	AT1G28240.1 CDS  gene_syn F3H9.11, F3H9_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53040.2); Has 193 Blast hits to 193 proteins in 28 species: Archae - 6; Bacteria - 19; Metazoa - 1; Fungi - 4; Plants - 118; Viruses - 1; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G28240.1p  transcript_id AT1G28240.1  protein_id AT1G28240.1p  transcript_id AT1G28240.1  
At1g28250	chr1:009874296	0.0	W/9874296-9874364,9874450-9874607,9875094-9875175	AT1G28250.1 CDS  gene_syn F3H9.10, F3H9_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28250.1p  transcript_id AT1G28250.1  protein_id AT1G28250.1p  transcript_id AT1G28250.1  
At1g28260	chr1:009875776	0.0	C/9875776-9877561,9877685-9877866,9877955-9878077,9878150-9878650,9878732-9878782	AT1G28260.1 CDS  gene_syn F3H9.9, F3H9_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SMG7 (TAIR:AT5G19400.1); Has 341 Blast hits to 340 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 71; Plants - 35; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G28260.1p  transcript_id AT1G28260.1  protein_id AT1G28260.1p  transcript_id AT1G28260.1  
At1g28260	chr1:009875776	0.0	C/9875776-9877561,9877685-9877866,9877955-9878077,9878150-9878650,9878732-9878782	AT1G28260.2 CDS  gene_syn F3H9.9, F3H9_9  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: SMG7 (TAIR:AT5G19400.1); Has 341 Blast hits to 340 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 71; Plants - 35; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G28260.2p  transcript_id AT1G28260.2  protein_id AT1G28260.2p  transcript_id AT1G28260.2  
At1g28270	chr1:009883165	0.0	W/9883165-9883497	AT1G28270.1 CDS  gene_syn F3H9.8, F3H9_8, RALFL4, ralf-like 4  gene RALFL4  function Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.  go_component apoplast|GO:0048046|12611624|ISS  go_process cell-cell signaling|GO:0007267|12611624|ISS  go_function signal transducer activity|GO:0004871|12611624|TAS  product RALFL4 (ralf-like 4); signal transducer  note ralf-like 4 (RALFL4); FUNCTIONS IN: signal transducer activity; INVOLVED IN: cell-cell signaling; LOCATED IN: apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALFL19 (ralf-like 19); signal transducer (TAIR:AT2G33775.1); Has 152 Blast hits to 152 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28270.1p  transcript_id AT1G28270.1  protein_id AT1G28270.1p  transcript_id AT1G28270.1  
At1g28280	chr1:009886297	0.0	C/9886297-9886310,9886678-9887395	AT1G28280.2 CDS  gene_syn F3H9.7, F3H9_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G33780.1); Has 130 Blast hits to 123 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 21; Plants - 83; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G28280.2p  transcript_id AT1G28280.2  protein_id AT1G28280.2p  transcript_id AT1G28280.2  
At1g28280	chr1:009886652	0.0	C/9886652-9887395	AT1G28280.1 CDS  gene_syn F3H9.7, F3H9_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product VQ motif-containing protein  note VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G33780.1); Has 170 Blast hits to 161 proteins in 41 species: Archae - 0; Bacteria - 2; Metazoa - 34; Fungi - 28; Plants - 85; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G28280.1p  transcript_id AT1G28280.1  protein_id AT1G28280.1p  transcript_id AT1G28280.1  
At1g28281	chr1:009887519	0.0	W/9887519-9887656	AT1G28281.1 CDS  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note unknown protein; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G28281.1p  transcript_id AT1G28281.1  protein_id AT1G28281.1p  transcript_id AT1G28281.1  
At1g28290	chr1:009889331	0.0	C/9889331-9889641,9890075-9890264,9890397-9890843	AT1G28290.2 CDS  gene_syn AGP31, F3H9.6, F3H9_6, arabinogalactan-protein 31  gene AGP31  function Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development.  go_component plasma membrane|GO:0005886|17885091|IDA  go_process response to jasmonic acid stimulus|GO:0009753|17885091|IEP  product AGP31 (arabinogalactan-protein 31)  note arabinogalactan-protein 31 (AGP31); INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: AGP30 (ARABINOGALACTAN PROTEIN30) (TAIR:AT2G33790.1); Has 92586 Blast hits to 31250 proteins in 1565 species: Archae - 349; Bacteria - 17543; Metazoa - 32125; Fungi - 8447; Plants - 11990; Viruses - 3096; Other Eukaryotes - 19036 (source: NCBI BLink).  protein_id AT1G28290.2p  transcript_id AT1G28290.2  protein_id AT1G28290.2p  transcript_id AT1G28290.2  
At1g28290	chr1:009889331	0.0	C/9889331-9889641,9890075-9890843	AT1G28290.1 CDS  gene_syn AGP31, F3H9.6, F3H9_6, arabinogalactan-protein 31  gene AGP31  function Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development.  go_component plasma membrane|GO:0005886|17885091|IDA  go_process response to jasmonic acid stimulus|GO:0009753|17885091|IEP  product AGP31 (arabinogalactan-protein 31)  note arabinogalactan-protein 31 (AGP31); INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: AGP30 (ARABINOGALACTAN PROTEIN30) (TAIR:AT2G33790.1); Has 133583 Blast hits to 38239 proteins in 1705 species: Archae - 537; Bacteria - 28088; Metazoa - 46884; Fungi - 12945; Plants - 14744; Viruses - 4641; Other Eukaryotes - 25744 (source: NCBI BLink).  protein_id AT1G28290.1p  transcript_id AT1G28290.1  protein_id AT1G28290.1p  transcript_id AT1G28290.1  
At1g28300	chr1:009897054	0.0	C/9897054-9897353,9897703-9897776,9897886-9897932,9898117-9898217,9899112-9899186,9899344-9899838	AT1G28300.1 CDS  gene_syn F3H9.5, F3H9_5, LEAFY COTYLEDON 2, LEC2  gene LEC2  function Transcription factor that contains a B3 domain, a DNA-binding motif unique to plants and characteristic of several transcription factors. Plays critical roles both early and late during embryo development. LEC2 RNA accumulates primarily during seed development. LEC2 is required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase, and suppression of premature germination. It establishes a cellular environment sufficient to initiate embryo development - ectopic, postembryonic expression of LEC2 in transgenic plants induces the formation of somatic embryos and other organ-like structures and often confers embryonic characteristics to seedlings and to reproductive and vegetative organs of mature plants.  go_component cellular_component|GO:0005575||ND  go_process response to heat|GO:0009408|10759505|IMP  go_process embryonic development|GO:0009790|12244265|IMP  go_process somatic embryogenesis|GO:0010262|11573014|IMP  go_process seed oilbody biogenesis|GO:0010344|18287041|IMP  go_process seed maturation|GO:0010431|18287041|IMP  go_process positive regulation of auxin biosynthetic process|GO:0010601|18287041|IMP  go_process positive regulation of transcription, DNA-dependent|GO:0045893|16492731|IDA  go_function DNA binding|GO:0003677|16492731|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12244265|ISS  go_function transcription factor activity|GO:0003700|16492731|IDA  product LEC2 (LEAFY COTYLEDON 2); DNA binding / transcription factor  note LEAFY COTYLEDON 2 (LEC2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured somatic embryo; EXPRESSED DURING: seedling growth, C globular stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: FUS3 (FUSCA 3); DNA binding / transcription activator/ transcription factor (TAIR:AT3G26790.1); Has 298 Blast hits to 297 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 298; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28300.1p  transcript_id AT1G28300.1  protein_id AT1G28300.1p  transcript_id AT1G28300.1  
At1g28304	chr1:009903567	0.0	W/9903567-9903680,9903778-9903805,9903919-9904010	AT1G28304.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G28304.1p  transcript_id AT1G28304.1  protein_id AT1G28304.1p  transcript_id AT1G28304.1  
At1g28305	chr1:009905026	0.0	C/9905026-9905439	AT1G28305.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28306.1); Has 67 Blast hits to 67 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28305.1p  transcript_id AT1G28305.1  protein_id AT1G28305.1p  transcript_id AT1G28305.1  
At1g28306	chr1:009907202	0.0	C/9907202-9907615	AT1G28306.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28305.1); Has 48 Blast hits to 48 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28306.1p  transcript_id AT1G28306.1  protein_id AT1G28306.1p  transcript_id AT1G28306.1  
At1g28307	chr1:009909020	0.0	W/9909020-9909127	AT1G28307.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G28307.1p  transcript_id AT1G28307.1  protein_id AT1G28307.1p  transcript_id AT1G28307.1  
At1g28310	chr1:009912534	0.0	C/9912534-9913469	AT1G28310.1 CDS  gene_syn F3H9.4, F3H9_4  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT5G02460.1); Has 926 Blast hits to 798 proteins in 76 species: Archae - 0; Bacteria - 20; Metazoa - 164; Fungi - 17; Plants - 618; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).  protein_id AT1G28310.1p  transcript_id AT1G28310.1  protein_id AT1G28310.1p  transcript_id AT1G28310.1  
At1g28310	chr1:009912534	0.0	C/9912534-9913475,9913650-9913685	AT1G28310.2 CDS  gene_syn F3H9.4, F3H9_4  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT5G02460.1); Has 945 Blast hits to 838 proteins in 78 species: Archae - 0; Bacteria - 20; Metazoa - 141; Fungi - 16; Plants - 623; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink).  protein_id AT1G28310.2p  transcript_id AT1G28310.2  protein_id AT1G28310.2p  transcript_id AT1G28310.2  
At1g28320	chr1:009920673	0.0	C/9920673-9920920,9921020-9921111,9921252-9921444,9921642-9922308,9922394-9922488,9922580-9922665,9922782-9922885,9922970-9923080,9923231-9923359,9923554-9923613,9923703-9923750,9923846-9924029,9924122-9924168,9924282-9924347	AT1G28320.1 CDS  gene_syn DEG15, F3H9.3, F3H9_3  gene DEG15  function Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.  go_component cellular_component|GO:0005575||ND  go_function endopeptidase activity|GO:0004175|17592111|IMP  product DEG15; endopeptidase  note DEG15; FUNCTIONS IN: endopeptidase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase, trypsin-like serine and cysteine (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DEGP1 (DegP protease 1); serine-type endopeptidase/ serine-type peptidase (TAIR:AT3G27925.1); Has 2262 Blast hits to 2191 proteins in 682 species: Archae - 14; Bacteria - 1484; Metazoa - 62; Fungi - 11; Plants - 65; Viruses - 0; Other Eukaryotes - 626 (source: NCBI BLink).  protein_id AT1G28320.1p  transcript_id AT1G28320.1  protein_id AT1G28320.1p  transcript_id AT1G28320.1  
At1g28323	chr1:009928401	0.0	W/9928401-9931731	AT1G28323.1 mRNA_TE_gene  pseudo  gene_syn F3H9.28  note Transposable element gene, copia-like retrotransposon family, has a 1.9e-140 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)  
At1g28327	chr1:009932120	0.0	W/9932120-9932635,9932711-9932818,9932906-9933079,9933169-9933195	AT1G28327.1 CDS  gene_syn F3H9.2, F3H9_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RING1B (RING 1B); protein binding / zinc ion binding (TAIR:AT1G03770.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28327.1p  transcript_id AT1G28327.1  protein_id AT1G28327.1p  transcript_id AT1G28327.1  
At1g28330	chr1:009934134	0.0	C/9934134-9934147,9934257-9934288,9934794-9935019,9935111-9935216	AT1G28330.4 CDS  gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DORMANCY-ASSOCIATED PROTEIN-LIKE 1, DRM1, DYL1, F3H9.1, F3H9_1  gene DYL1  function dormancy-associated protein (DRM1)  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function molecular_function|GO:0003674||ND  product DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)  note DORMANCY-ASSOCIATED PROTEIN-LIKE 1 (DYL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated family protein (TAIR:AT2G33830.2).  protein_id AT1G28330.4p  transcript_id AT1G28330.4  protein_id AT1G28330.4p  transcript_id AT1G28330.4  
At1g28330	chr1:009934252	0.0	C/9934252-9934288,9934794-9935019,9935111-9935216	AT1G28330.1 CDS  gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DORMANCY-ASSOCIATED PROTEIN-LIKE 1, DRM1, DYL1, F3H9.1, F3H9_1  gene DYL1  function dormancy-associated protein (DRM1)  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function molecular_function|GO:0003674||ND  product DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)  note DORMANCY-ASSOCIATED PROTEIN-LIKE 1 (DYL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 152 Blast hits to 152 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G28330.1p  transcript_id AT1G28330.1  protein_id AT1G28330.1p  transcript_id AT1G28330.1  
At1g28330	chr1:009934500	0.0	C/9934500-9934566,9934794-9935019,9935111-9935216	AT1G28330.2 CDS  gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DORMANCY-ASSOCIATED PROTEIN-LIKE 1, DRM1, DYL1, F3H9.1, F3H9_1  gene DYL1  function dormancy-associated protein (DRM1)  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function molecular_function|GO:0003674||ND  product DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)  note DORMANCY-ASSOCIATED PROTEIN-LIKE 1 (DYL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 152 Blast hits to 152 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G28330.2p  transcript_id AT1G28330.2  protein_id AT1G28330.2p  transcript_id AT1G28330.2  
At1g28330	chr1:009934500	0.0	C/9934500-9934566,9934794-9935019,9935111-9935216	AT1G28330.3 CDS  gene_syn DORMANCY-ASSOCIATED PROTEIN 1, DORMANCY-ASSOCIATED PROTEIN-LIKE 1, DRM1, DYL1, F3H9.1, F3H9_1  gene DYL1  function dormancy-associated protein (DRM1)  go_component cellular_component|GO:0005575||ND  go_process response to sucrose stimulus|GO:0009744|16463203|IEP  go_process response to glucose stimulus|GO:0009749|16463203|IEP  go_process response to fructose stimulus|GO:0009750|16463203|IEP  go_function molecular_function|GO:0003674||ND  product DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)  note DORMANCY-ASSOCIATED PROTEIN-LIKE 1 (DYL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy/auxin associated family protein (TAIR:AT2G33830.2); Has 152 Blast hits to 152 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 151; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G28330.3p  transcript_id AT1G28330.3  protein_id AT1G28330.3p  transcript_id AT1G28330.3  
At1g28335	chr1:009937036	0.0	W/9937036-9937096,9937353-9937537	AT1G28335.1 CDS  gene_syn LCR31, Low-molecular-weight cysteine-rich 31  gene LCR31  function Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.  go_component endomembrane system|GO:0012505||IEA  product LCR31 (Low-molecular-weight cysteine-rich 31)  note Low-molecular-weight cysteine-rich 31 (LCR31); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); Has 11 Blast hits to 11 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28335.1p  transcript_id AT1G28335.1  protein_id AT1G28335.1p  transcript_id AT1G28335.1  
At1g28340	chr1:009940175	0.0	W/9940175-9940247,9940327-9941382,9941726-9941873,9942044-9942115,9942333-9942404,9942496-9942567,9942663-9942740,9942858-9943039,9943125-9943252	AT1G28340.1 CDS  gene_syn AtRLP4, F3M18.23, F3M18_23, Receptor Like Protein 4  gene AtRLP4  go_component endomembrane system|GO:0012505||IEA  go_process signal transduction|GO:0007165|11751054|IC  go_function protein binding|GO:0005515|11751054|NAS  go_function protein binding|GO:0005515||ISS  product AtRLP4 (Receptor Like Protein 4); protein binding  note Receptor Like Protein 4 (AtRLP4); FUNCTIONS IN: protein binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: leucine-rich repeat protein-related (TAIR:AT1G25570.1); Has 46726 Blast hits to 10140 proteins in 530 species: Archae - 12; Bacteria - 1198; Metazoa - 2417; Fungi - 194; Plants - 40627; Viruses - 0; Other Eukaryotes - 2278 (source: NCBI BLink).  protein_id AT1G28340.1p  transcript_id AT1G28340.1  protein_id AT1G28340.1p  transcript_id AT1G28340.1  
At1g28350	chr1:009944483	0.0	W/9944483-9944541,9944864-9945017,9945053-9945420,9945500-9945596,9945773-9945878,9945965-9946047,9946127-9946272,9946447-9946552,9946666-9946725,9946850-9946866,9946985-9947065,9947407-9947560,9947930-9948213,9948294-9948390,9948481-9948586,9948666-9948748,9948831-9948973,9949080-9949185,9949399-9949458,9949557-9949577	AT1G28350.1 CDS  gene_syn F3M18.22, F3M18_22  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process tyrosyl-tRNA aminoacylation|GO:0006437||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function tyrosine-tRNA ligase activity|GO:0004831||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase  note ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / tyrosine-tRNA ligase; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tyrosyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (W and Y) family protein (TAIR:AT2G33840.1); Has 4633 Blast hits to 3201 proteins in 879 species: Archae - 457; Bacteria - 1594; Metazoa - 549; Fungi - 307; Plants - 158; Viruses - 10; Other Eukaryotes - 1558 (source: NCBI BLink).  protein_id AT1G28350.1p  transcript_id AT1G28350.1  protein_id AT1G28350.1p  transcript_id AT1G28350.1  
At1g28360	chr1:009951934	0.0	W/9951934-9952503	AT1G28360.1 CDS  gene_syn ATERF12, ERF DOMAIN PROTEIN 12, ERF12, F3M18.21, F3M18_21  gene ERF12  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677|11487705|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487705|TAS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription repressor activity|GO:0016564|11487705|TAS  product ERF12 (ERF DOMAIN PROTEIN 12); DNA binding / transcription factor/ transcription repressor  note ERF DOMAIN PROTEIN 12 (ERF12); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF9 (ERF DOMAIN PROTEIN 9); DNA binding / transcription factor/ transcription repressor (TAIR:AT5G44210.1); Has 3562 Blast hits to 3496 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 3555; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G28360.1p  transcript_id AT1G28360.1  protein_id AT1G28360.1p  transcript_id AT1G28360.1  
At1g28370	chr1:009956351	0.0	C/9956351-9956851	AT1G28370.1 CDS  gene_syn ATERF11, ERF DOMAIN PROTEIN 11, ERF11, F3M18.20, F3M18_20  gene ERF11  function encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.  go_component nucleus|GO:0005634|11487705|IC  go_process regulation of transcription, DNA-dependent|GO:0006355|11487705|TAS  go_process ethylene mediated signaling pathway|GO:0009873|9687012|TAS  go_function DNA binding|GO:0003677|11487705|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11487705|TAS  go_function transcription factor activity|GO:0003700|9687012|TAS  go_function transcription repressor activity|GO:0016564|11487705|TAS  product ERF11 (ERF DOMAIN PROTEIN 11); DNA binding / transcription factor/ transcription repressor  note ERF DOMAIN PROTEIN 11 (ERF11); FUNCTIONS IN: transcription repressor activity, transcription factor activity, DNA binding; INVOLVED IN: ethylene mediated signaling pathway, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor and ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcription repressor (TAIR:AT3G15210.1); Has 3957 Blast hits to 3723 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3949; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G28370.1p  transcript_id AT1G28370.1  protein_id AT1G28370.1p  transcript_id AT1G28370.1  
At1g28375	chr1:009961155	0.0	W/9961155-9961463	AT1G28375.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28375.1p  transcript_id AT1G28375.1  protein_id AT1G28375.1p  transcript_id AT1G28375.1  
At1g28380	chr1:009963696	0.0	W/9963696-9963968,9964064-9964302,9964393-9964594,9964683-9964763,9964847-9965030,9965115-9965281,9965368-9966060	AT1G28380.1 CDS  gene_syn F3M18.18, F3M18_18, NSL1, necrotic spotted lesions 1  gene NSL1  function This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots.  go_component cellular_component|GO:0005575||ND  go_process plant-type hypersensitive response|GO:0009626|16900325|IMP  go_process response to salt stress|GO:0009651|16900325|TAS  go_process regulation of salicylic acid metabolic process|GO:0010337|16900325|IMP  go_process callose deposition during defense response|GO:0052542|16900325|IMP  go_function molecular_function|GO:0003674||ND  product NSL1 (necrotic spotted lesions 1)  note necrotic spotted lesions 1 (NSL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, regulation of salicylic acid metabolic process, callose deposition during defense response, plant-type hypersensitive response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24290.2); Has 106 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28380.1p  transcript_id AT1G28380.1  protein_id AT1G28380.1p  transcript_id AT1G28380.1  
At1g28390	chr1:009966814	0.0	C/9966814-9968226	AT1G28390.1 CDS  gene_syn F3M18.17, F3M18_17  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT3G51990.1); Has 73028 Blast hits to 72345 proteins in 1845 species: Archae - 34; Bacteria - 6252; Metazoa - 31459; Fungi - 5628; Plants - 17207; Viruses - 316; Other Eukaryotes - 12132 (source: NCBI BLink).  protein_id AT1G28390.1p  transcript_id AT1G28390.1  protein_id AT1G28390.1p  transcript_id AT1G28390.1  
At1g28395	chr1:009969817	0.0	C/9969817-9969836,9971073-9971188,9971282-9971433	AT1G28395.4 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28395.4p  transcript_id AT1G28395.4  protein_id AT1G28395.4p  transcript_id AT1G28395.4  
At1g28395	chr1:009970134	0.0	C/9970134-9970153,9971073-9971188,9971282-9971433	AT1G28395.1 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 65 Blast hits to 65 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28395.1p  transcript_id AT1G28395.1  protein_id AT1G28395.1p  transcript_id AT1G28395.1  
At1g28395	chr1:009970134	0.0	C/9970134-9970153,9971073-9971188,9971282-9971433	AT1G28395.2 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 65 Blast hits to 65 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28395.2p  transcript_id AT1G28395.2  protein_id AT1G28395.2p  transcript_id AT1G28395.2  
At1g28395	chr1:009970134	0.0	C/9970134-9970153,9971073-9971188,9971282-9971433	AT1G28395.3 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 65 Blast hits to 65 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28395.3p  transcript_id AT1G28395.3  protein_id AT1G28395.3p  transcript_id AT1G28395.3  
At1g28400	chr1:009972732	0.0	C/9972732-9973739	AT1G28400.1 CDS  gene_syn F3M18.16, F3M18_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 44658 Blast hits to 17636 proteins in 467 species: Archae - 50; Bacteria - 837; Metazoa - 1245; Fungi - 895; Plants - 135; Viruses - 63; Other Eukaryotes - 41433 (source: NCBI BLink).  protein_id AT1G28400.1p  transcript_id AT1G28400.1  protein_id AT1G28400.1p  transcript_id AT1G28400.1  
At1g28410	chr1:009976596	0.0	C/9976596-9976652,9976751-9976831,9976918-9977076,9977194-9977250,9977366-9977416,9977857-9977970,9978121-9978168,9978688-9978815,9978942-9979080	AT1G28410.1 CDS  gene_syn F3M18.15, F3M18_15  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.2); Has 325 Blast hits to 311 proteins in 62 species: Archae - 4; Bacteria - 12; Metazoa - 199; Fungi - 2; Plants - 61; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G28410.1p  transcript_id AT1G28410.1  protein_id AT1G28410.1p  transcript_id AT1G28410.1  
At1g28420	chr1:009979936	0.0	W/9979936-9980113,9980195-9980674,9980791-9980861,9981175-9981537,9981630-9981719,9981834-9981998,9982125-9982347,9982780-9982880,9983050-9983136,9983239-9983391,9983484-9983639,9983817-9984026,9984114-9984761,9984861-9985373,9985500-9986057,9986138-9986242,9986337-9986579,9986687-9987460	AT1G28420.1 CDS  gene_syn F3M18.14, F3M18_14, HB-1, homeobox-1  gene HB-1  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product HB-1 (homeobox-1); transcription factor  note homeobox-1 (HB-1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), DDT subgroup (InterPro:IPR018500), DDT family (InterPro:IPR004022), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox transcription factor, putative (TAIR:AT5G44180.1); Has 30280 Blast hits to 21821 proteins in 1085 species: Archae - 44; Bacteria - 1335; Metazoa - 18653; Fungi - 1932; Plants - 937; Viruses - 78; Other Eukaryotes - 7301 (source: NCBI BLink).  protein_id AT1G28420.1p  transcript_id AT1G28420.1  protein_id AT1G28420.1p  transcript_id AT1G28420.1  
At1g28430	chr1:009992986	0.0	C/9992986-9993639,9993731-9994642	AT1G28430.1 CDS  gene_syn CYP705A24, F3M18.13, F3M18_13  gene CYP705A24  function member of CYP705A  go_component endomembrane system|GO:0012505||IEA  go_function monooxygenase activity|GO:0004497||IEA  go_function iron ion binding|GO:0005506||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function oxygen binding|GO:0019825||ISS  product CYP705A24; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding  note CYP705A24; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: CYP705A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (TAIR:AT4G15330.1); Has 23030 Blast hits to 22938 proteins in 1226 species: Archae - 21; Bacteria - 1777; Metazoa - 10292; Fungi - 4557; Plants - 5572; Viruses - 6; Other Eukaryotes - 805 (source: NCBI BLink).  protein_id AT1G28430.1p  transcript_id AT1G28430.1  protein_id AT1G28430.1p  transcript_id AT1G28430.1  
At1g28440	chr1:009996914	0.0	W/9996914-9999500,9999768-10000171	AT1G28440.1 CDS  gene_syn F3M18.12, F3M18_12, HAESA-Like 1, HSL1  gene HSL1  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product HSL1 (HAESA-Like 1); ATP binding / kinase/ protein serine/threonine kinase  note HAESA-Like 1 (HSL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: HAE (HAESA); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT4G28490.1); Has 146860 Blast hits to 94798 proteins in 2852 species: Archae - 79; Bacteria - 12502; Metazoa - 57487; Fungi - 6803; Plants - 50326; Viruses - 373; Other Eukaryotes - 19290 (source: NCBI BLink).  protein_id AT1G28440.1p  transcript_id AT1G28440.1  protein_id AT1G28440.1p  transcript_id AT1G28440.1  
At1g28447	chr1:010003150	0.0	W/10003150-10003540	AT1G28447.1 pseudogenic_transcript  pseudo  function Pseudogene of AT5G18880; glucose transmembrane transporter  
At1g28450	chr1:010003966	0.0	W/10003966-10004523	AT1G28450.1 CDS  gene_syn AGAMOUS-LIKE 58, AGL58, F3M18.11, F3M18_11  gene AGL58  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL58 (AGAMOUS-LIKE 58); DNA binding / transcription factor  note AGAMOUS-LIKE 58 (AGL58); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL59 (AGAMOUS-LIKE 59); DNA binding / transcription factor (TAIR:AT1G28460.1); Has 3415 Blast hits to 3415 proteins in 462 species: Archae - 0; Bacteria - 0; Metazoa - 463; Fungi - 144; Plants - 2775; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G28450.1p  transcript_id AT1G28450.1  protein_id AT1G28450.1p  transcript_id AT1G28450.1  
At1g28455	chr1:010005230	0.0	W/10005230-10005700	AT1G28455.1 pseudogenic_transcript  pseudo  gene_syn F3M18.31  note pseudogene, similar to SAE1-S9-protein, blastp match of 46% identity and 6.4e-07 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}  
At1g28460	chr1:010006230	0.0	W/10006230-10006778	AT1G28460.1 CDS  gene_syn AGAMOUS-LIKE 59, AGL59, F3M18.10, F3M18_10  gene AGL59  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL59 (AGAMOUS-LIKE 59); DNA binding / transcription factor  note AGAMOUS-LIKE 59 (AGL59); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL58 (AGAMOUS-LIKE 58); DNA binding / transcription factor (TAIR:AT1G28450.1); Has 3754 Blast hits to 3753 proteins in 514 species: Archae - 0; Bacteria - 0; Metazoa - 533; Fungi - 194; Plants - 2983; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).  protein_id AT1G28460.1p  transcript_id AT1G28460.1  protein_id AT1G28460.1p  transcript_id AT1G28460.1  
At1g28465	chr1:010007521	0.0	W/10007521-10008087	AT1G28465.1 mRNA_TE_gene  pseudo  gene_syn F3M18.30  note Transposable element gene, pseudogene, hypothetical protein  
At1g28470	chr1:010010259	0.0	W/10010259-10010459,10010550-10010742,10011317-10011867	AT1G28470.1 CDS  gene_syn ANAC010, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10, F3M18.9, F3M18_9, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, SND3  gene ANAC010  go_component nucleus|GO:0005634|18952777|IDA  go_process multicellular organismal development|GO:0007275||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription activator activity|GO:0016563|18952777|IDA  product ANAC010 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10); transcription activator/ transcription factor  note ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 10 (ANAC010); FUNCTIONS IN: transcription factor activity, transcription activator activity; INVOLVED IN: multicellular organismal development, regulation of secondary cell wall thickening; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73); transcription activator/ transcription factor (TAIR:AT4G28500.1); Has 1240 Blast hits to 1238 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1240; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28470.1p  transcript_id AT1G28470.1  protein_id AT1G28470.1p  transcript_id AT1G28470.1  
At1g28480	chr1:010013634	0.0	C/10013634-10014047	AT1G28480.1 CDS  gene_syn GRX480  gene GRX480  function Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk.  go_function electron carrier activity|GO:0009055||IEA  go_function protein disulfide oxidoreductase activity|GO:0015035||IEA  go_component cellular_component|GO:0005575||ND  go_process response to salicylic acid stimulus|GO:0009751|17397508|IEP  go_process salicylic acid mediated signaling pathway|GO:0009863|17397508|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|17397508|IMP  product GRX480; electron carrier/ protein disulfide oxidoreductase  note GRX480; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: salicylic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutaredoxin family protein (TAIR:AT1G03850.2); Has 456 Blast hits to 455 proteins in 65 species: Archae - 0; Bacteria - 6; Metazoa - 42; Fungi - 12; Plants - 389; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G28480.1p  transcript_id AT1G28480.1  protein_id AT1G28480.1p  transcript_id AT1G28480.1  
At1g28490	chr1:010016433	0.0	W/10016433-10016486,10016567-10016680,10016869-10016982,10017079-10017266,10017412-10017502,10017588-10017653,10017732-10017842	AT1G28490.1 CDS  gene_syn ATSYP61, F3M18.7, F3M18_7, OSM1, SYNTAXIN OF PLANTS 61, SYP61  gene SYP61  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component trans-Golgi network transport vesicle|GO:0030140|11115874|ISS  go_process intracellular protein transport|GO:0006886|11115874|ISS  go_process membrane fusion|GO:0006944|11115874|ISS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP61 (SYNTAXIN OF PLANTS 61); SNAP receptor  note SYNTAXIN OF PLANTS 61 (SYP61); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: trans-Golgi network transport vesicle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: protein binding (TAIR:AT1G27700.1); Has 663 Blast hits to 632 proteins in 153 species: Archae - 0; Bacteria - 2; Metazoa - 267; Fungi - 162; Plants - 131; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G28490.1p  transcript_id AT1G28490.1  protein_id AT1G28490.1p  transcript_id AT1G28490.1  
At1g28490	chr1:010016634	0.0	W/10016634-10016680,10016865-10016982,10017079-10017266,10017412-10017502,10017588-10017653,10017732-10017842	AT1G28490.2 CDS  gene_syn ATSYP61, F3M18.7, F3M18_7, OSM1, SYNTAXIN OF PLANTS 61, SYP61  gene SYP61  function Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.  go_component trans-Golgi network transport vesicle|GO:0030140|11115874|ISS  go_process intracellular protein transport|GO:0006886|11115874|ISS  go_process membrane fusion|GO:0006944|11115874|ISS  go_function SNAP receptor activity|GO:0005484|11115874|TAS  product SYP61 (SYNTAXIN OF PLANTS 61); SNAP receptor  note SYNTAXIN OF PLANTS 61 (SYP61); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: membrane fusion, intracellular protein transport; LOCATED IN: trans-Golgi network transport vesicle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin 6, N-terminal (InterPro:IPR015260); Has 561 Blast hits to 561 proteins in 142 species: Archae - 0; Bacteria - 2; Metazoa - 218; Fungi - 156; Plants - 96; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).  protein_id AT1G28490.2p  transcript_id AT1G28490.2  protein_id AT1G28490.2p  transcript_id AT1G28490.2  
At1g28500	chr1:010018691	0.0	W/10018691-10018777,10019020-10019163,10019335-10019536,10019626-10019759,10019846-10019932,10020024-10020350	AT1G28500.1 CDS  gene_syn F3M18.6, F3M18_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27860.1); Has 78 Blast hits to 77 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28500.1p  transcript_id AT1G28500.1  protein_id AT1G28500.1p  transcript_id AT1G28500.1  
At1g28510	chr1:010024036	0.0	W/10024036-10024164,10024371-10024505,10025148-10025234,10025775-10025939	AT1G28510.1 CDS  gene_syn F3M18.5, F3M18_5  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Optic atrophy 3-like (InterPro:IPR010754); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58150.1); Has 279 Blast hits to 279 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 74; Plants - 40; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G28510.1p  transcript_id AT1G28510.1  protein_id AT1G28510.1p  transcript_id AT1G28510.1  
At1g28520	chr1:010029713	0.0	W/10029713-10029943,10030064-10030213,10030311-10030827,10030917-10031479	AT1G28520.1 CDS  gene_syn ATVOZ1, F3M18.4, F3M18_4, VASCULAR PLANT ONE ZINC FINGER PROTEIN, VOZ1  gene VOZ1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription activator activity|GO:0016563|15295067|IDA  product VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN); transcription activator  note VASCULAR PLANT ONE ZINC FINGER PROTEIN (VOZ1); FUNCTIONS IN: transcription activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2); transcription activator (TAIR:AT2G42400.1); Has 45 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28520.1p  transcript_id AT1G28520.1  protein_id AT1G28520.1p  transcript_id AT1G28520.1  
At1g28520	chr1:010029713	0.0	W/10029713-10029943,10030064-10030213,10030311-10030827,10030917-10031479	AT1G28520.2 CDS  gene_syn ATVOZ1, F3M18.4, F3M18_4, VASCULAR PLANT ONE ZINC FINGER PROTEIN, VOZ1  gene VOZ1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription activator activity|GO:0016563|15295067|IDA  product VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN); transcription activator  note VASCULAR PLANT ONE ZINC FINGER PROTEIN (VOZ1); FUNCTIONS IN: transcription activator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2); transcription activator (TAIR:AT2G42400.1); Has 45 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28520.2p  transcript_id AT1G28520.2  protein_id AT1G28520.2p  transcript_id AT1G28520.2  
At1g28530	chr1:010032127	0.0	C/10032127-10032245,10032346-10032466,10032549-10032779,10033134-10033319,10033674-10033784,10034236-10034721,10034822-10035025,10035113-10035496	AT1G28530.2 CDS  gene_syn F3M18.3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28530.2p  transcript_id AT1G28530.2  protein_id AT1G28530.2p  transcript_id AT1G28530.2  
At1g28530	chr1:010032127	0.0	C/10032127-10032245,10032346-10032466,10032549-10032779,10033134-10033319,10033674-10033784,10034236-10034724,10034822-10035025,10035113-10035496	AT1G28530.1 CDS  gene_syn F3M18.3  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28530.1p  transcript_id AT1G28530.1  protein_id AT1G28530.1p  transcript_id AT1G28530.1  
At1g28540	chr1:010035696	0.0	W/10035696-10036007	AT1G28540.1 CDS  gene_syn F3M18.29  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28540.1p  transcript_id AT1G28540.1  protein_id AT1G28540.1p  transcript_id AT1G28540.1  
At1g28550	chr1:010036966	0.0	C/10036966-10037401,10037478-10037698	AT1G28550.1 CDS  gene_syn Arabidopsis Rab GTPase homolog A1i, AtRABA1i, F3M18.2  gene AtRABA1i  go_component plasma membrane|GO:0005886|17644812|IDA  go_process small GTPase mediated signal transduction|GO:0007264||IEA  go_process protein transport|GO:0015031||IEA  go_function GTP binding|GO:0005525||IEA  go_function GTP binding|GO:0005525||ISS  product AtRABA1i (Arabidopsis Rab GTPase homolog A1i); GTP binding  note Arabidopsis Rab GTPase homolog A1i (AtRABA1i); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: ArRABA1h (Arabidopsis Rab GTPase homolog A1h); GTP binding (TAIR:AT2G33870.1); Has 21308 Blast hits to 21276 proteins in 590 species: Archae - 15; Bacteria - 91; Metazoa - 11783; Fungi - 2744; Plants - 1831; Viruses - 19; Other Eukaryotes - 4825 (source: NCBI BLink).  protein_id AT1G28550.1p  transcript_id AT1G28550.1  protein_id AT1G28550.1p  transcript_id AT1G28550.1  
At1g28560	chr1:010038197	0.0	C/10038197-10038472,10038574-10038834,10038927-10039052,10039147-10039239,10039346-10039436,10039523-10039611,10039775-10039889,10040205-10040257,10040359-10040382	AT1G28560.1 CDS  gene_syn F3M18.1, SHOOT REDIFFERENTIATION DEFECTIVE 2, SRD2  gene SRD2  function Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation.  go_component nucleus|GO:0005634|16098103|IDA  go_process snRNA transcription|GO:0009301|16098103|IMP  go_process snRNA transcription|GO:0009301||ISS  go_process organ morphogenesis|GO:0009887|12232244|IMP  go_function DNA binding|GO:0003677||ISS  product SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2); DNA binding  note SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2); FUNCTIONS IN: DNA binding; INVOLVED IN: snRNA transcription, organ morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 178 Blast hits to 178 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G28560.1p  transcript_id AT1G28560.1  protein_id AT1G28560.1p  transcript_id AT1G28560.1  
At1g28560	chr1:010038197	0.0	C/10038197-10038472,10038574-10038834,10038927-10039052,10039147-10039239,10039346-10039436,10039523-10039611,10039775-10039889,10040205-10040257,10040359-10040382	AT1G28560.2 CDS  gene_syn F3M18.1, SHOOT REDIFFERENTIATION DEFECTIVE 2, SRD2  gene SRD2  function Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation.  go_component nucleus|GO:0005634|16098103|IDA  go_process snRNA transcription|GO:0009301|16098103|IMP  go_process snRNA transcription|GO:0009301||ISS  go_process organ morphogenesis|GO:0009887|12232244|IMP  go_function DNA binding|GO:0003677||ISS  product SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2); DNA binding  note SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2); FUNCTIONS IN: DNA binding; INVOLVED IN: snRNA transcription, organ morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 178 Blast hits to 178 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G28560.2p  transcript_id AT1G28560.2  protein_id AT1G28560.2p  transcript_id AT1G28560.2  
At1g28570	chr1:010041838	0.0	C/10041838-10042103,10042179-10042455,10042524-10042672,10043048-10043263,10043851-10044112	AT1G28570.1 CDS  gene_syn F1K23.19, F1K23_19  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28580.1); Has 1842 Blast hits to 1809 proteins in 166 species: Archae - 0; Bacteria - 247; Metazoa - 1; Fungi - 4; Plants - 1579; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G28570.1p  transcript_id AT1G28570.1  protein_id AT1G28570.1p  transcript_id AT1G28570.1  
At1g28570	chr1:010041838	0.0	C/10041838-10042103,10042179-10042455,10042524-10042672,10043851-10044112	AT1G28570.2 CDS  gene_syn F1K23.19, F1K23_19  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G31550.2); Has 2057 Blast hits to 1513 proteins in 92 species: Archae - 0; Bacteria - 105; Metazoa - 2; Fungi - 0; Plants - 1948; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G28570.2p  transcript_id AT1G28570.2  protein_id AT1G28570.2p  transcript_id AT1G28570.2  
At1g28580	chr1:010044603	0.0	C/10044603-10044862,10044948-10045224,10045300-10045448,10045631-10045846,10046109-10046379	AT1G28580.1 CDS  gene_syn F1K23.18, F1K23_18  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28570.1); Has 1868 Blast hits to 1834 proteins in 164 species: Archae - 0; Bacteria - 265; Metazoa - 1; Fungi - 5; Plants - 1584; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G28580.1p  transcript_id AT1G28580.1  protein_id AT1G28580.1p  transcript_id AT1G28580.1  
At1g28580	chr1:010044603	0.0	C/10044603-10044862,10044948-10045224,10045300-10045448,10045631-10045874	AT1G28580.2 CDS  gene_syn F1K23.18, F1K23_18  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28570.1); Has 1576 Blast hits to 1556 proteins in 93 species: Archae - 0; Bacteria - 83; Metazoa - 1; Fungi - 0; Plants - 1489; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G28580.2p  transcript_id AT1G28580.2  protein_id AT1G28580.2p  transcript_id AT1G28580.2  
At1g28590	chr1:010047509	0.0	C/10047509-10047810,10047903-10048179,10048307-10048455,10048590-10048805,10049033-10049300	AT1G28590.1 CDS  gene_syn F1K23.17, F1K23_17  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT2G27360.1); Has 1785 Blast hits to 1753 proteins in 142 species: Archae - 0; Bacteria - 199; Metazoa - 1; Fungi - 4; Plants - 1576; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G28590.1p  transcript_id AT1G28590.1  protein_id AT1G28590.1p  transcript_id AT1G28590.1  
At1g28591	chr1:010049485	0.0	C/10049485-10049857	AT1G28591.1 pseudogenic_transcript  pseudo  function Pseudogene of AT1G28610; GDSL-motif lipase, putative  
At1g28600	chr1:010051228	0.0	C/10051228-10051517,10051609-10051885,10052019-10052167,10052254-10052466,10052821-10053073	AT1G28600.1 CDS  gene_syn F1K23.28, F1K23_28  go_component cell wall|GO:0005618|15593128|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28610.2); Has 1708 Blast hits to 1677 proteins in 109 species: Archae - 0; Bacteria - 131; Metazoa - 1; Fungi - 0; Plants - 1573; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G28600.1p  transcript_id AT1G28600.1  protein_id AT1G28600.1p  transcript_id AT1G28600.1  
At1g28600	chr1:010051604	0.0	C/10051604-10051885,10052019-10052167,10052254-10052466,10052821-10053073	AT1G28600.2 CDS  gene_syn F1K23.28, F1K23_28  go_component cell wall|GO:0005618|15593128|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase, putative (TAIR:AT1G28610.2); Has 1518 Blast hits to 1499 proteins in 62 species: Archae - 0; Bacteria - 45; Metazoa - 1; Fungi - 0; Plants - 1472; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28600.2p  transcript_id AT1G28600.2  protein_id AT1G28600.2p  transcript_id AT1G28600.2  
At1g28610	chr1:010053877	0.0	C/10053877-10054136,10054234-10054510,10054615-10054760,10054866-10055081,10055413-10055665	AT1G28610.2 CDS  gene_syn F1K23.16, F1K23_16  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT2G27360.1); Has 1800 Blast hits to 1773 proteins in 147 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 4; Plants - 1572; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G28610.2p  transcript_id AT1G28610.2  protein_id AT1G28610.2p  transcript_id AT1G28610.2  
At1g28610	chr1:010054477	0.0	C/10054477-10054760,10054866-10055081,10055413-10055665	AT1G28610.1 CDS  gene_syn F1K23.16, F1K23_16  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT1G28600.2); Has 1392 Blast hits to 1383 proteins in 53 species: Archae - 0; Bacteria - 18; Metazoa - 1; Fungi - 0; Plants - 1373; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28610.1p  transcript_id AT1G28610.1  protein_id AT1G28610.1p  transcript_id AT1G28610.1  
At1g28620	chr1:010056193	0.0	C/10056193-10057819	AT1G28620.1 pseudogenic_transcript  pseudo  gene_syn F1K23.15  note pseudogene, lipase, similar to lipase Arab-1 GB:S68410 GI:2129636 (Arabidopsis thaliana); blastp match of 44% identity and 1.2e-48 P-value to GP|7523500|dbj|BAA94228.1||AP001633 unnamed protein product {Oryza sativa (japonica cultivar-group)}  
At1g28630	chr1:010058790	0.0	C/10058790-10058877,10059104-10059162,10059245-10059325,10059512-10059626,10059758-10059826,10059994-10060062,10060187-10060255,10060443-10060511,10061227-10061373,10061471-10061583,10061668-10061799,10061916-10062032,10062186-10062299,10062439-10062540,10062689-10062802,10062877-10063032,10063375-10063452	AT1G28630.4 CDS  gene_syn F1K23.14, F1K23_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77960.1); Has 1247 Blast hits to 997 proteins in 121 species: Archae - 0; Bacteria - 18; Metazoa - 277; Fungi - 126; Plants - 104; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).  protein_id AT1G28630.4p  transcript_id AT1G28630.4  protein_id AT1G28630.4p  transcript_id AT1G28630.4  
At1g28630	chr1:010061223	0.0	C/10061223-10061373,10061471-10061565,10061668-10061799,10061916-10062032,10062186-10062299,10062439-10062543,10062689-10062802,10062877-10063032,10063375-10063452	AT1G28630.3 CDS  gene_syn F1K23.14, F1K23_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77960.1); Has 588 Blast hits to 501 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 88; Fungi - 52; Plants - 70; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink).  protein_id AT1G28630.3p  transcript_id AT1G28630.3  protein_id AT1G28630.3p  transcript_id AT1G28630.3  
At1g28630	chr1:010061223	0.0	C/10061223-10061373,10061471-10061583,10061668-10061799,10061916-10062032,10062186-10062299,10062439-10062543,10062689-10062802,10062877-10063032,10063375-10063452	AT1G28630.1 CDS  gene_syn F1K23.14, F1K23_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77960.1); Has 628 Blast hits to 498 proteins in 74 species: Archae - 0; Bacteria - 6; Metazoa - 96; Fungi - 41; Plants - 75; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).  protein_id AT1G28630.1p  transcript_id AT1G28630.1  protein_id AT1G28630.1p  transcript_id AT1G28630.1  
At1g28630	chr1:010061223	0.0	C/10061223-10061373,10061471-10061583,10061668-10061799,10061916-10062032,10062186-10062299,10062439-10062543,10062689-10062874	AT1G28630.5 CDS  gene_syn F1K23.14, F1K23_14  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77960.1); Has 424 Blast hits to 342 proteins in 45 species: Archae - 0; Bacteria - 4; Metazoa - 46; Fungi - 22; Plants - 46; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).  protein_id AT1G28630.5p  transcript_id AT1G28630.5  protein_id AT1G28630.5p  transcript_id AT1G28630.5  
At1g28630	chr1:010061223	0.0	C/10061223-10061373,10061471-10061583,10061668-10061799,10061916-10062032,10062439-10062540,10062689-10062802,10062877-10063032,10063375-10063452	AT1G28630.2 CDS  gene_syn F1K23.14, F1K23_14  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77960.1); Has 367 Blast hits to 330 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 29; Plants - 46; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink).  protein_id AT1G28630.2p  transcript_id AT1G28630.2  protein_id AT1G28630.2p  transcript_id AT1G28630.2  
At1g28640	chr1:010067563	0.0	C/10067563-10067825,10067902-10068178,10068257-10068405,10068501-10068719,10068845-10069109	AT1G28640.1 CDS  gene_syn F1K23.25, F1K23_25  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G28670.1); Has 1790 Blast hits to 1762 proteins in 141 species: Archae - 0; Bacteria - 210; Metazoa - 1; Fungi - 6; Plants - 1570; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G28640.1p  transcript_id AT1G28640.1  protein_id AT1G28640.1p  transcript_id AT1G28640.1  
At1g28650	chr1:010069547	0.0	C/10069547-10069791,10069880-10070153,10070234-10070382,10070461-10070679,10070812-10071082	AT1G28650.1 CDS  gene_syn F1K23.27, F1K23_27  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G28670.1); Has 1759 Blast hits to 1730 proteins in 129 species: Archae - 0; Bacteria - 177; Metazoa - 1; Fungi - 2; Plants - 1574; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G28650.1p  transcript_id AT1G28650.1  protein_id AT1G28650.1p  transcript_id AT1G28650.1  
At1g28660	chr1:010071856	0.0	C/10071856-10072100,10072181-10072457,10072530-10072675,10072754-10072972,10073107-10073371	AT1G28660.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G28670.1); Has 1745 Blast hits to 1718 proteins in 131 species: Archae - 0; Bacteria - 168; Metazoa - 1; Fungi - 2; Plants - 1562; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G28660.1p  transcript_id AT1G28660.1  protein_id AT1G28660.1p  transcript_id AT1G28660.1  
At1g28660	chr1:010071856	0.0	C/10071856-10072100,10072181-10072457,10072533-10072675,10072754-10072972,10073107-10073371	AT1G28660.2 CDS  go_component endomembrane system|GO:0012505||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product lipase, putative  note lipase, putative; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds (TAIR:AT1G28670.1); Has 1726 Blast hits to 1699 proteins in 126 species: Archae - 0; Bacteria - 158; Metazoa - 1; Fungi - 2; Plants - 1561; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G28660.2p  transcript_id AT1G28660.2  protein_id AT1G28660.2p  transcript_id AT1G28660.2  
At1g28670	chr1:010074669	0.0	C/10074669-10074913,10074993-10075269,10075360-10075508,10075640-10075858,10075986-10076250	AT1G28670.1 CDS  gene_syn ARAB-1  gene ARAB-1  function Arabidopsis thaliana lipase  go_component endomembrane system|GO:0012505||IEA  go_process glycerol biosynthetic process|GO:0006114||IEA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product ARAB-1; carboxylesterase/ hydrolase, acting on ester bonds  note ARAB-1; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT1G28660.1); Has 1712 Blast hits to 1683 proteins in 124 species: Archae - 0; Bacteria - 167; Metazoa - 1; Fungi - 0; Plants - 1541; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G28670.1p  transcript_id AT1G28670.1  protein_id AT1G28670.1p  transcript_id AT1G28670.1  
At1g28685	chr1:010077923	0.0	C/10077923-10079643	AT1G28685.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G28680  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G28685.1  
At1g28680	chr1:010078222	0.0	W/10078222-10079033,10079120-10079397,10079498-10079763	AT1G28680.1 CDS  gene_syn F1K23.12, F1K23_12  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT5G07080.1); Has 1278 Blast hits to 1274 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 45; Plants - 1233; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28680.1p  transcript_id AT1G28680.1  protein_id AT1G28680.1p  transcript_id AT1G28680.1  
At1g28690	chr1:010080042	0.0	C/10080042-10081604	AT1G28690.1 CDS  gene_syn F1K23.11, F1K23_11  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT4G14820.1); Has 14168 Blast hits to 5004 proteins in 144 species: Archae - 1; Bacteria - 4; Metazoa - 115; Fungi - 67; Plants - 13637; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).  protein_id AT1G28690.1p  transcript_id AT1G28690.1  protein_id AT1G28690.1p  transcript_id AT1G28690.1  
At1g28695	chr1:010081894	0.0	C/10081894-10082385,10082475-10082867,10082950-10083054	AT1G28695.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28700.1); Has 209 Blast hits to 206 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G28695.1p  transcript_id AT1G28695.1  protein_id AT1G28695.1p  transcript_id AT1G28695.1  
At1g28700	chr1:010083773	0.0	C/10083773-10084264,10084349-10084738,10084824-10084958	AT1G28700.1 CDS  gene_syn F1K23.10, F1K23_10  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28710.1); Has 179 Blast hits to 175 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G28700.1p  transcript_id AT1G28700.1  protein_id AT1G28700.1p  transcript_id AT1G28700.1  
At1g28710	chr1:010086850	0.0	C/10086850-10087350,10087431-10087766	AT1G28710.2 CDS  gene_syn F1K23.9, F1K23_9  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28700.1).  protein_id AT1G28710.2p  transcript_id AT1G28710.2  protein_id AT1G28710.2p  transcript_id AT1G28710.2  
At1g28710	chr1:010086850	0.0	C/10086850-10087350,10087431-10087820,10087894-10088025	AT1G28710.1 CDS  gene_syn F1K23.9, F1K23_9  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28700.1); Has 204 Blast hits to 200 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G28710.1p  transcript_id AT1G28710.1  protein_id AT1G28710.1p  transcript_id AT1G28710.1  
At1g28720	chr1:010089437	0.0	W/10089437-10089508	AT1G28720.1 tRNA  gene_syn 51358.TRNA-PRO-26  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28720.1  
At1g28730	chr1:010089898	0.0	W/10089898-10089969	AT1G28730.1 tRNA  gene_syn 51358.TRNA-PRO-25  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G28730.1  
At1g28740	chr1:010090368	0.0	W/10090368-10090439	AT1G28740.1 tRNA  gene_syn 51358.TRNA-PRO-24  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28740.1  
At1g28750	chr1:010090769	0.0	W/10090769-10090840	AT1G28750.1 tRNA  gene_syn 51358.TRNA-PRO-23  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28750.1  
At1g28770	chr1:010092325	0.0	W/10092325-10092396	AT1G28770.1 tRNA  gene_syn 51358.TRNA-PRO-22  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28770.1  
At1g28780	chr1:010092801	0.0	W/10092801-10092872	AT1G28780.1 tRNA  gene_syn 51358.TRNA-PRO-21  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28780.1  
At1g28790	chr1:010093309	0.0	W/10093309-10093380	AT1G28790.1 tRNA  gene_syn 51358.TRNA-PRO-20  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28790.1  
At1g28800	chr1:010093746	0.0	W/10093746-10093817	AT1G28800.1 tRNA  gene_syn 51358.TRNA-PRO-19  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28800.1  
At1g28810	chr1:010094173	0.0	W/10094173-10094244	AT1G28810.1 tRNA  gene_syn 51358.TRNA-PRO-18  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28810.1  
At1g28815	chr1:010095812	0.0	W/10095812-10095913,10095999-10096244	AT1G28815.1 CDS  product unknown protein  note unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28815.1p  transcript_id AT1G28815.1  protein_id AT1G28815.1p  transcript_id AT1G28815.1  
At1g28820	chr1:010096951	0.0	W/10096951-10097022	AT1G28820.1 tRNA  gene_syn 51358.TRNA-PRO-17  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G28820.1  
At1g28830	chr1:010097114	0.0	W/10097114-10097185	AT1G28830.1 tRNA  gene_syn 51358.TRNA-PRO-16  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28830.1  
At1g28840	chr1:010097718	0.0	W/10097718-10097789	AT1G28840.1 tRNA  gene_syn 51358.TRNA-PRO-15  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28840.1  
At1g28850	chr1:010098653	0.0	W/10098653-10098724	AT1G28850.1 tRNA  gene_syn 51358.TRNA-PRO-14  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28850.1  
At1g28860	chr1:010099079	0.0	W/10099079-10099150	AT1G28860.1 tRNA  gene_syn 51358.TRNA-PRO-13  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28860.1  
At1g28870	chr1:010099425	0.0	W/10099425-10099496	AT1G28870.1 tRNA  gene_syn 51358.TRNA-PRO-12  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: AGG)  transcript_id AT1G28870.1  
At1g28880	chr1:010099827	0.0	W/10099827-10099898	AT1G28880.1 tRNA  gene_syn 51358.TRNA-PRO-11  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28880.1  
At1g28890	chr1:010100273	0.0	W/10100273-10100344	AT1G28890.1 tRNA  gene_syn 51358.TRNA-PRO-10  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28890.1  
At1g28900	chr1:010101028	0.0	W/10101028-10101099	AT1G28900.1 tRNA  gene_syn 51358.TRNA-PRO-9  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28900.1  
At1g28910	chr1:010101600	0.0	W/10101600-10101671	AT1G28910.1 tRNA  gene_syn 51358.TRNA-PRO-8  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28910.1  
At1g28920	chr1:010101993	0.0	W/10101993-10102064	AT1G28920.1 tRNA  gene_syn 51358.TRNA-PRO-7  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28920.1  
At1g28760	chr1:010103158	0.0	W/10103158-10104588	AT1G28760.1 CDS  gene_syn F1K23.6, F1K23_6  product unknown protein  note unknown protein; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67610.2); Has 101 Blast hits to 101 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G28760.1p  transcript_id AT1G28760.1  protein_id AT1G28760.1p  transcript_id AT1G28760.1  
At1g28930	chr1:010106090	0.0	W/10106090-10106161	AT1G28930.1 tRNA  gene_syn 51358.TRNA-PRO-6  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28930.1  
At1g28940	chr1:010106528	0.0	W/10106528-10106599	AT1G28940.1 tRNA  gene_syn 51358.TRNA-PRO-5  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28940.1  
At1g28950	chr1:010106898	0.0	W/10106898-10106969	AT1G28950.1 tRNA  gene_syn 51358.TRNA-PRO-4  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28950.1  
At1g28970	chr1:010107649	0.0	W/10107649-10107720	AT1G28970.1 tRNA  gene_syn 51358.TRNA-PRO-3  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28970.1  
At1g28980	chr1:010108389	0.0	W/10108389-10108460	AT1G28980.1 tRNA  gene_syn 51358.TRNA-PRO-2  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28980.1  
At1g28990	chr1:010108710	0.0	W/10108710-10108781	AT1G28990.1 tRNA  gene_syn 51358.TRNA-PRO-1, 52095.TRNA-PRO-1, AT1G28975  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Pro (anticodon: TGG)  transcript_id AT1G28990.1  
At1g28960	chr1:010110020	0.0	C/10110020-10110022,10110162-10110359,10110454-10110573,10110946-10111088,10111214-10111607	AT1G28960.2 CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, ATNUDT15, ATNUDX15, F1K23.5, F1K23_5  gene ATNUDX15  go_component mitochondrion|GO:0005739|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15 (ATNUDX15); FUNCTIONS IN: hydrolase activity, CoA pyrophosphatase activity (sent to SF); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase (TAIR:AT2G33980.1); Has 2486 Blast hits to 2486 proteins in 782 species: Archae - 27; Bacteria - 1315; Metazoa - 138; Fungi - 119; Plants - 57; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G28960.2p  transcript_id AT1G28960.2  protein_id AT1G28960.2p  transcript_id AT1G28960.2  
At1g28960	chr1:010110020	0.0	C/10110020-10110022,10110162-10110359,10110454-10110573,10110946-10111088,10111214-10111607	AT1G28960.4 CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, ATNUDT15, ATNUDX15, F1K23.5, F1K23_5  gene ATNUDX15  go_component mitochondrion|GO:0005739|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15 (ATNUDX15); FUNCTIONS IN: hydrolase activity, CoA pyrophosphatase activity (sent to SF); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase (TAIR:AT2G33980.1); Has 2486 Blast hits to 2486 proteins in 782 species: Archae - 27; Bacteria - 1315; Metazoa - 138; Fungi - 119; Plants - 57; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G28960.4p  transcript_id AT1G28960.4  protein_id AT1G28960.4p  transcript_id AT1G28960.4  
At1g28960	chr1:010110135	0.0	C/10110135-10110359,10110454-10110573,10110946-10111088,10111214-10111607	AT1G28960.1 CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, ATNUDT15, ATNUDX15, F1K23.5, F1K23_5  gene ATNUDX15  go_component mitochondrion|GO:0005739|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15 (ATNUDX15); FUNCTIONS IN: hydrolase activity, CoA pyrophosphatase activity (sent to SF); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase (TAIR:AT2G33980.1); Has 2486 Blast hits to 2486 proteins in 782 species: Archae - 27; Bacteria - 1315; Metazoa - 138; Fungi - 119; Plants - 57; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G28960.1p  transcript_id AT1G28960.1  protein_id AT1G28960.1p  transcript_id AT1G28960.1  
At1g28960	chr1:010110135	0.0	C/10110135-10110359,10110454-10110573,10110946-10111088,10111214-10111607	AT1G28960.3 CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, ATNUDT15, ATNUDX15, F1K23.5, F1K23_5  gene ATNUDX15  go_component mitochondrion|GO:0005739|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15 (ATNUDX15); FUNCTIONS IN: hydrolase activity, CoA pyrophosphatase activity (sent to SF); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase (TAIR:AT2G33980.1); Has 2486 Blast hits to 2486 proteins in 782 species: Archae - 27; Bacteria - 1315; Metazoa - 138; Fungi - 119; Plants - 57; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G28960.3p  transcript_id AT1G28960.3  protein_id AT1G28960.3p  transcript_id AT1G28960.3  
At1g28960	chr1:010110135	0.0	C/10110135-10110359,10110454-10110573,10110946-10111088,10111214-10111607	AT1G28960.5 CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, ATNUDT15, ATNUDX15, F1K23.5, F1K23_5  gene ATNUDX15  go_component mitochondrion|GO:0005739|18815383|IDA  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15 (ATNUDX15); FUNCTIONS IN: hydrolase activity, CoA pyrophosphatase activity (sent to SF); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086), Nudix hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: atnudt22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase (TAIR:AT2G33980.1); Has 2486 Blast hits to 2486 proteins in 782 species: Archae - 27; Bacteria - 1315; Metazoa - 138; Fungi - 119; Plants - 57; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).  protein_id AT1G28960.5p  transcript_id AT1G28960.5  protein_id AT1G28960.5p  transcript_id AT1G28960.5  
At1g29000	chr1:010113018	0.0	W/10113018-10113138,10113388-10113593,10113685-10113772,10113892-10114340	AT1G29000.1 CDS  gene_syn F1K23.4, F1K23_4  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_function metal ion binding|GO:0046872||ISS  product heavy-metal-associated domain-containing protein  note heavy-metal-associated domain-containing protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: ATFP3; metal ion binding / transition metal ion binding (TAIR:AT5G63530.2); Has 56039 Blast hits to 24050 proteins in 1217 species: Archae - 218; Bacteria - 3970; Metazoa - 23746; Fungi - 4979; Plants - 2054; Viruses - 503; Other Eukaryotes - 20569 (source: NCBI BLink).  protein_id AT1G29000.1p  transcript_id AT1G29000.1  protein_id AT1G29000.1p  transcript_id AT1G29000.1  
At1g29010	chr1:010117715	0.0	W/10117715-10118074,10118166-10118273,10118366-10118445,10118547-10118709,10118782-10118973	AT1G29010.1 CDS  gene_syn F28N24.31  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34010.1); Has 14 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29010.1p  transcript_id AT1G29010.1  protein_id AT1G29010.1p  transcript_id AT1G29010.1  
At1g29020	chr1:010120497	0.0	C/10120497-10120766,10120861-10121154,10121242-10121497,10121587-10121750,10121912-10121988,10122259-10122420,10122512-10122859,10124643-10124772,10124880-10125176,10125254-10125509,10125607-10125746,10125835-10126016,10126103-10126163,10126236-10126396,10126485-10126875	AT1G29020.1 CDS  gene_syn F28N24.34  go_component endomembrane system|GO:0012505||IEA  go_function calcium ion binding|GO:0005509||IEA  go_function calcium ion binding|GO:0005509||ISS  product calcium-binding EF hand family protein  note calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root, callus; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium ion binding (TAIR:AT2G34020.1); Has 277 Blast hits to 201 proteins in 49 species: Archae - 8; Bacteria - 0; Metazoa - 57; Fungi - 5; Plants - 154; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).  protein_id AT1G29020.1p  transcript_id AT1G29020.1  protein_id AT1G29020.1p  transcript_id AT1G29020.1  
At1g29030	chr1:010129201	0.0	C/10129201-10129411,10129512-10129615,10129734-10129799,10129885-10129999,10130108-10130214,10130293-10130382,10130529-10130639,10130906-10130971,10131070-10131135,10131778-10131927,10132013-10132087,10132444-10132535,10132830-10132895,10132978-10133077,10133208-10133369,10133608-10133697	AT1G29030.1 CDS  gene_syn F28N24.26, F28N24_26  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product apoptosis inhibitory 5 (API5) family protein  note apoptosis inhibitory 5 (API5) family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: apoptosis inhibitory 5 (API5) family protein (TAIR:AT2G34040.1); Has 774 Blast hits to 590 proteins in 143 species: Archae - 2; Bacteria - 48; Metazoa - 221; Fungi - 85; Plants - 108; Viruses - 7; Other Eukaryotes - 303 (source: NCBI BLink).  protein_id AT1G29030.1p  transcript_id AT1G29030.1  protein_id AT1G29030.1p  transcript_id AT1G29030.1  
At1g29040	chr1:010134120	0.0	W/10134120-10134397,10134505-10134536,10134686-10134797,10135051-10135180	AT1G29040.2 CDS  gene_syn F28N24.25, F28N24_25  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 107 Blast hits to 107 proteins in 44 species: Archae - 0; Bacteria - 78; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G29040.2p  transcript_id AT1G29040.2  protein_id AT1G29040.2p  transcript_id AT1G29040.2  
At1g29040	chr1:010134120	0.0	W/10134120-10134397,10134505-10134581,10134686-10134797,10135051-10135180	AT1G29040.1 CDS  gene_syn F28N24.25, F28N24_25  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 235 Blast hits to 235 proteins in 66 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G29040.1p  transcript_id AT1G29040.1  protein_id AT1G29040.1p  transcript_id AT1G29040.1  
At1g29040	chr1:010134120	0.0	W/10134120-10134397,10134505-10134581,10134686-10134797,10135051-10135180	AT1G29040.4 CDS  gene_syn F28N24.25, F28N24_25  product unknown protein  note unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719).  protein_id AT1G29040.4p  transcript_id AT1G29040.4  protein_id AT1G29040.4p  transcript_id AT1G29040.4  
At1g29040	chr1:010134120	0.0	W/10134120-10134397,10134505-10134621,10134727-10134797,10135051-10135064	AT1G29040.3 CDS  gene_syn F28N24.25, F28N24_25  go_component vacuole|GO:0005773|15539469|IDA  go_component chloroplast|GO:0009507|18431481|IDA  product unknown protein  note unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 63 Blast hits to 63 proteins in 27 species: Archae - 0; Bacteria - 41; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G29040.3p  transcript_id AT1G29040.3  protein_id AT1G29040.3p  transcript_id AT1G29040.3  
At1g29041	chr1:010135451	0.0	W/10135451-10135987	AT1G29041.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown.  protein_id AT1G29041.1p  transcript_id AT1G29041.1  protein_id AT1G29041.1p  transcript_id AT1G29041.1  
At1g29050	chr1:010136376	0.0	C/10136376-10136664,10136775-10136933,10137003-10137181,10138074-10138245,10138739-10139082	AT1G29050.1 CDS  gene_syn F28N24.24, F28N24_24  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34070.1); Has 710 Blast hits to 699 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 709; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G29050.1p  transcript_id AT1G29050.1  protein_id AT1G29050.1p  transcript_id AT1G29050.1  
At1g29060	chr1:010147857	0.0	W/10147857-10147918,10148042-10148165,10148603-10148659,10149298-10149459	AT1G29060.1 CDS  gene_syn F28N24.23, F28N24_23  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14600.1); Has 95 Blast hits to 95 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 15; Plants - 47; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G29060.1p  transcript_id AT1G29060.1  protein_id AT1G29060.1p  transcript_id AT1G29060.1  
At1g29070	chr1:010149884	0.0	W/10149884-10150097,10150896-10151155	AT1G29070.1 CDS  gene_syn F28N24.22, F28N24_22  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_component chloroplast|GO:0009507||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product ribosomal protein L34 family protein  note ribosomal protein L34 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34 (InterPro:IPR000271); Has 389 Blast hits to 389 proteins in 164 species: Archae - 0; Bacteria - 342; Metazoa - 0; Fungi - 9; Plants - 23; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).  protein_id AT1G29070.1p  transcript_id AT1G29070.1  protein_id AT1G29070.1p  transcript_id AT1G29070.1  
At1g29071	chr1:010151668	0.0	C/10151668-10151774	AT1G29071.1 snoRNA  gene_syn SMALL NUCLEOLAR RNA 105, SNOR105  gene SNOR105  function predicted to encode a C/D box type of snoRNA, also known as Ath-282 (GB:AJ505633). But, the submitted sequence of 106 nucleotides is only part of the 162 nucleotide sequence predicted by Northern blotting. It is assumed that a 5  portion of the gene is missing and its 5  end has not been conclusively mapped. Sequence analysis of this snoRNA suggests that it may not function like other C/D box family members that modify rRNAs or snRNAs. Its true biological target remains unknown. The promoter of this snoRNA has hallmarks of the snRNA promoters targeted by RNA polymerase II, indicating that it might also have a TMG (2,2,7 trimethyguanosine) cap. SnoRNA105 may also play a novel role in ribosome biogenesis (Marker 2002). Northern blotting reveals that snoRNA105 expression levels are higher in seedlings than in adult plants.  go_component cellular_component|GO:0005575||ND  go_process ribosome biogenesis|GO:0042254|12477388|TAS  go_function molecular_function|GO:0003674||ND  product SNOR105 (SMALL NUCLEOLAR RNA 105); snoRNA  transcript_id AT1G29071.1  
At1g29075	chr1:010153543	0.0	W/10153543-10154701	AT1G29075.1 mRNA_TE_gene  pseudo  gene_syn F28N24.21  note Transposable element gene, pseudogene, hypothetical protein, similar to mutator-like transposase GB:AAC97243 GI:4038062 from (Arabidopsis thaliana)  
At1g29080	chr1:010157494	0.0	C/10157494-10158080,10158221-10158674	AT1G29080.1 CDS  gene_syn F28N24.27, F28N24_27  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product peptidase C1A papain family protein  note peptidase C1A papain family protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: peptidase C1A papain family protein (TAIR:AT1G29090.1); Has 6127 Blast hits to 6088 proteins in 585 species: Archae - 29; Bacteria - 116; Metazoa - 2820; Fungi - 4; Plants - 1218; Viruses - 118; Other Eukaryotes - 1822 (source: NCBI BLink).  protein_id AT1G29080.1p  transcript_id AT1G29080.1  protein_id AT1G29080.1p  transcript_id AT1G29080.1  
At1g29090	chr1:010163103	0.0	C/10163103-10163689,10163905-10164385	AT1G29090.1 CDS  gene_syn F28N24.20, F28N24_20  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product peptidase C1A papain family protein  note peptidase C1A papain family protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: cysteine proteinase, putative (TAIR:AT2G34080.1); Has 6151 Blast hits to 6107 proteins in 580 species: Archae - 27; Bacteria - 101; Metazoa - 2851; Fungi - 4; Plants - 1232; Viruses - 120; Other Eukaryotes - 1816 (source: NCBI BLink).  protein_id AT1G29090.1p  transcript_id AT1G29090.1  protein_id AT1G29090.1p  transcript_id AT1G29090.1  
At1g29100	chr1:010169084	0.0	W/10169084-10169150,10169261-10169619	AT1G29100.1 CDS  gene_syn F28N24.19, F28N24_19  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  go_process copper ion transport|GO:0006825||ISS  go_function copper ion binding|GO:0005507||ISS  product copper-binding family protein  note copper-binding family protein; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: copper-binding family protein (TAIR:AT1G06330.1); Has 500 Blast hits to 488 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 12; Plants - 485; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29100.1p  transcript_id AT1G29100.1  protein_id AT1G29100.1p  transcript_id AT1G29100.1  
At1g29110	chr1:010171683	0.0	W/10171683-10172136,10172521-10173071	AT1G29110.1 CDS  gene_syn F28N24.18, F28N24_18  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function cysteine-type endopeptidase activity|GO:0004197||IEA  go_function cysteine-type peptidase activity|GO:0008234||IEA  go_process proteolysis|GO:0006508||ISS  go_function cysteine-type peptidase activity|GO:0008234||ISS  product cysteine proteinase, putative  note cysteine proteinase, putative; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: peptidase C1A papain family protein (TAIR:AT1G29080.1); Has 5899 Blast hits to 5864 proteins in 552 species: Archae - 17; Bacteria - 32; Metazoa - 2765; Fungi - 2; Plants - 1200; Viruses - 122; Other Eukaryotes - 1761 (source: NCBI BLink).  protein_id AT1G29110.1p  transcript_id AT1G29110.1  protein_id AT1G29110.1p  transcript_id AT1G29110.1  
At1g29120	chr1:010174481	0.0	W/10174481-10174670,10175213-10175363,10175592-10175659,10176001-10176071,10176188-10176433,10176741-10176904,10176987-10177042,10177138-10177190,10177614-10177811	AT1G29120.3 CDS  gene_syn AT1G29130, F28N24.29, F28N24_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 468 Blast hits to 468 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 197; Plants - 87; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G29120.3p  transcript_id AT1G29120.3  protein_id AT1G29120.3p  transcript_id AT1G29120.3  
At1g29120	chr1:010174481	0.0	W/10174481-10174670,10175216-10175363,10175592-10175659,10176001-10176071,10176188-10176433,10176741-10176904,10176987-10177042,10177138-10177190,10177614-10177782,10177861-10177958,10178039-10178143	AT1G29120.1 CDS  gene_syn AT1G29130, F28N24.29, F28N24_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 477 Blast hits to 470 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 197; Plants - 96; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G29120.1p  transcript_id AT1G29120.1  protein_id AT1G29120.1p  transcript_id AT1G29120.1  
At1g29120	chr1:010174481	0.0	W/10174481-10174670,10175216-10175363,10175592-10175659,10176001-10176071,10176188-10176433,10176741-10176904,10176987-10177042,10177138-10177190,10177614-10177782,10177861-10177958,10178039-10178143	AT1G29120.2 CDS  gene_syn AT1G29130, F28N24.29, F28N24_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 477 Blast hits to 470 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 197; Plants - 96; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G29120.2p  transcript_id AT1G29120.2  protein_id AT1G29120.2p  transcript_id AT1G29120.2  
At1g29120	chr1:010174481	0.0	W/10174481-10174670,10175216-10175363,10175592-10175659,10176001-10176071,10176188-10176433,10176741-10176904,10176987-10177042,10177138-10177190,10177614-10177784,10177861-10177869	AT1G29120.4 CDS  gene_syn AT1G29130, F28N24.29, F28N24_29  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25770.1); Has 468 Blast hits to 468 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 197; Plants - 87; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G29120.4p  transcript_id AT1G29120.4  protein_id AT1G29120.4p  transcript_id AT1G29120.4  
At1g29140	chr1:010179029	0.0	W/10179029-10179197,10179465-10179811	AT1G29140.1 CDS  gene_syn F28N24.16, F28N24_16  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pollen Ole e 1 allergen and extensin family protein  note pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen and extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: pollen Ole e 1 allergen and extensin family protein (TAIR:AT5G45880.1); Has 207 Blast hits to 207 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29140.1p  transcript_id AT1G29140.1  protein_id AT1G29140.1p  transcript_id AT1G29140.1  
At1g29150	chr1:010181240	0.0	W/10181240-10182499	AT1G29150.1 CDS  gene_syn ARABIDOPSIS NON-ATPASE SUBUNIT 9, ATS9, REGULATORY PARTICLE NON-ATPASE 6, RPN6  gene ATS9  function specifically interacts with FUS6/COP11 via the C-terminal domain of FUS6/COP11 and associates with an ATPase subunit of the 19S proteasome regulatory complex, AtS6A.  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_component nucleus|GO:0005634|11742986|TAS  go_component proteasome regulatory particle, lid subcomplex|GO:0008541||ISS  go_process ubiquitin-dependent protein catabolic process|GO:0006511|10363660|TAS  go_process protein catabolic process|GO:0030163|11742986|TAS  product ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)  note ARABIDOPSIS NON-ATPASE SUBUNIT 9 (ATS9); INVOLVED IN: response to cadmium ion, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Proteasome component region PCI (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: FUS12 (FUSCA 12) (TAIR:AT2G26990.1); Has 645 Blast hits to 630 proteins in 171 species: Archae - 0; Bacteria - 2; Metazoa - 250; Fungi - 153; Plants - 131; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).  protein_id AT1G29150.1p  transcript_id AT1G29150.1  protein_id AT1G29150.1p  transcript_id AT1G29150.1  
At1g29160	chr1:010183797	0.0	C/10183797-10184324	AT1G29160.1 CDS  gene_syn F28N24.35  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12475498|ISS  product Dof-type zinc finger domain-containing protein  note Dof-type zinc finger domain-containing protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT2G34140.1); Has 618 Blast hits to 614 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G29160.1p  transcript_id AT1G29160.1  protein_id AT1G29160.1p  transcript_id AT1G29160.1  
At1g29170	chr1:010190352	0.0	C/10190352-10190402,10190530-10190646,10190747-10190839,10190964-10193142,10193221-10193288,10193377-10193506,10193600-10193723,10194126-10194289,10194764-10194900	AT1G29170.1 CDS  gene_syn ATSCAR3, F28N24.14, F28N24_14, SCAR3, WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, WAVE2  gene WAVE2  function Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.  go_component SCAR complex|GO:0031209|18424615|TAS  go_process positive regulation of actin nucleation|GO:0051127|18424615|IMP  go_function molecular_function|GO:0003674||ND  product WAVE2  note WAVE2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex; BEST Arabidopsis thaliana protein match is: WAVE1; actin monomer binding (TAIR:AT2G34150.2); Has 1048 Blast hits to 798 proteins in 162 species: Archae - 0; Bacteria - 181; Metazoa - 457; Fungi - 58; Plants - 141; Viruses - 4; Other Eukaryotes - 207 (source: NCBI BLink).  protein_id AT1G29170.1p  transcript_id AT1G29170.1  protein_id AT1G29170.1p  transcript_id AT1G29170.1  
At1g29170	chr1:010190588	0.0	C/10190588-10190632,10190747-10190839,10190964-10193142,10193221-10193288,10193377-10193506,10193600-10193723,10194126-10194289,10194764-10194900	AT1G29170.3 CDS  gene_syn ATSCAR3, F28N24.14, F28N24_14, SCAR3, WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, WAVE2  gene WAVE2  function Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.  go_component SCAR complex|GO:0031209|18424615|TAS  go_process positive regulation of actin nucleation|GO:0051127|18424615|IMP  go_function molecular_function|GO:0003674||ND  product WAVE2  note WAVE2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex; BEST Arabidopsis thaliana protein match is: WAVE1; actin monomer binding (TAIR:AT2G34150.2); Has 931 Blast hits to 708 proteins in 141 species: Archae - 0; Bacteria - 189; Metazoa - 401; Fungi - 57; Plants - 109; Viruses - 4; Other Eukaryotes - 171 (source: NCBI BLink).  protein_id AT1G29170.3p  transcript_id AT1G29170.3  protein_id AT1G29170.3p  transcript_id AT1G29170.3  
At1g29170	chr1:010190720	0.0	C/10190720-10190839,10190964-10193142,10193221-10193288,10193377-10193506,10193600-10193723,10194126-10194289,10194764-10194900	AT1G29170.2 CDS  gene_syn ATSCAR3, F28N24.14, F28N24_14, SCAR3, WASP (WISKOTT-ALDRICH SYNDROME PROTEIN)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, WAVE2  gene WAVE2  function Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex.The SCAR subunit activates the ARP2/3 complex which in turn act as a nucleator for actin filaments.  go_component SCAR complex|GO:0031209|18424615|TAS  go_process positive regulation of actin nucleation|GO:0051127|18424615|IMP  go_function molecular_function|GO:0003674||ND  product WAVE2  note WAVE2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of actin nucleation; LOCATED IN: SCAR complex; BEST Arabidopsis thaliana protein match is: WAVE1; actin monomer binding (TAIR:AT2G34150.2); Has 933 Blast hits to 708 proteins in 141 species: Archae - 0; Bacteria - 189; Metazoa - 401; Fungi - 57; Plants - 109; Viruses - 4; Other Eukaryotes - 173 (source: NCBI BLink).  protein_id AT1G29170.2p  transcript_id AT1G29170.2  protein_id AT1G29170.2p  transcript_id AT1G29170.2  
At1g29179	chr1:010198862	0.0	W/10198862-10199578	AT1G29179.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT1G44020.1); Has 165 Blast hits to 57 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 144; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G29179.1p  transcript_id AT1G29179.1  protein_id AT1G29179.1p  transcript_id AT1G29179.1  
At1g29180	chr1:010199628	0.0	W/10199628-10200962	AT1G29180.1 CDS  gene_syn F28N24.13, F28N24_13  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product DC1 domain-containing protein  note DC1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, leaf whorl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: DC1 domain-containing protein (TAIR:AT5G48320.1); Has 1085 Blast hits to 487 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 1055; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).  protein_id AT1G29180.1p  transcript_id AT1G29180.1  protein_id AT1G29180.1p  transcript_id AT1G29180.1  
At1g29190	chr1:010201045	0.0	C/10201045-10201799	AT1G29190.1 pseudogenic_transcript  pseudo  gene_syn F28N24.33  note pseudogene, hypothetical protein  
At1g29195	chr1:010202673	0.0	C/10202673-10203254	AT1G29195.1 CDS  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 102 Blast hits to 102 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29195.1p  transcript_id AT1G29195.1  protein_id AT1G29195.1p  transcript_id AT1G29195.1  
At1g29210	chr1:010207306	0.0	C/10207306-10207378	AT1G29210.1 tRNA  gene_syn 52095.TRNA-GLU-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT1G29210.1  
At1g29200	chr1:010208002	0.0	W/10208002-10208361,10208437-10208511,10208589-10208765,10208843-10208931,10209014-10209131,10209215-10209358,10209438-10209763,10209847-10210087,10210183-10210488	AT1G29200.2 CDS  gene_syn F28N24.11, F28N24_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62330.1); Has 435 Blast hits to 422 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 435; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29200.2p  transcript_id AT1G29200.2  protein_id AT1G29200.2p  transcript_id AT1G29200.2  
At1g29200	chr1:010208425	0.0	W/10208425-10208511,10208589-10208765,10208843-10208931,10209014-10209131,10209215-10209358,10209438-10209763,10209847-10210087,10210183-10210488	AT1G29200.1 CDS  gene_syn F28N24.11, F28N24_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62330.1); Has 433 Blast hits to 420 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 433; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29200.1p  transcript_id AT1G29200.1  protein_id AT1G29200.1p  transcript_id AT1G29200.1  
At1g29200	chr1:010208724	0.0	W/10208724-10208765,10208843-10208931,10209014-10209131,10209215-10209358,10209438-10209763,10209847-10210087,10210183-10210488	AT1G29200.3 CDS  gene_syn F28N24.11, F28N24_11  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF246, plant (InterPro:IPR004348); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62330.1); Has 432 Blast hits to 419 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 432; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29200.3p  transcript_id AT1G29200.3  protein_id AT1G29200.3p  transcript_id AT1G29200.3  
At1g29220	chr1:010210678	0.0	C/10210678-10210744,10210842-10210963,10211064-10211158,10211242-10211373,10211606-10211807,10212134-10212571	AT1G29220.1 CDS  gene_syn F28N24.10, F28N24_10  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function transcription regulator activity|GO:0030528||ISS  product transcriptional regulator family protein  note transcriptional regulator family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HCNGP-like (InterPro:IPR012479); Has 10343 Blast hits to 2896 proteins in 211 species: Archae - 2; Bacteria - 122; Metazoa - 7536; Fungi - 402; Plants - 244; Viruses - 187; Other Eukaryotes - 1850 (source: NCBI BLink).  protein_id AT1G29220.1p  transcript_id AT1G29220.1  protein_id AT1G29220.1p  transcript_id AT1G29220.1  
At1g29230	chr1:010214860	0.0	W/10214860-10216422	AT1G29230.1 CDS  gene_syn ATWL1, CBL-INTERACTING PROTEIN KINASE 18, CIPK18, F28N24.9, F28N24_9, SNF1-RELATED PROTEIN KINASE 3.20, SnRK3.20, WL1, WPL4-LIKE 1  gene CIPK18  function Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18).  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process signal transduction|GO:0007165||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||ISS  product CIPK18 (CBL-INTERACTING PROTEIN KINASE 18); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 18 (CIPK18); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK13 (CBL-INTERACTING PROTEIN KINASE 13); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT2G34180.1); Has 95405 Blast hits to 93884 proteins in 3076 species: Archae - 79; Bacteria - 8678; Metazoa - 41027; Fungi - 8676; Plants - 18136; Viruses - 474; Other Eukaryotes - 18335 (source: NCBI BLink).  protein_id AT1G29230.1p  transcript_id AT1G29230.1  protein_id AT1G29230.1p  transcript_id AT1G29230.1  
At1g29240	chr1:010217023	0.0	C/10217023-10217061,10217150-10217887,10217968-10218924	AT1G29240.1 CDS  gene_syn F28N24.8, F28N24_8  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34170.2); Has 42 Blast hits to 42 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29240.1p  transcript_id AT1G29240.1  protein_id AT1G29240.1p  transcript_id AT1G29240.1  
At1g29250	chr1:010223461	0.0	C/10223461-10223556,10223681-10223745,10223846-10223908,10224142-10224190,10224473-10224592	AT1G29250.1 CDS  gene_syn F28N24.7, F28N24_7  go_component nucleus|GO:0005634|14617066|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_function nucleic acid binding|GO:0003676||IEA  go_process biological_process|GO:0008150||ND  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT2G34160.1); Has 89 Blast hits to 89 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G29250.1p  transcript_id AT1G29250.1  protein_id AT1G29250.1p  transcript_id AT1G29250.1  
At1g29260	chr1:010224923	0.0	W/10224923-10225876	AT1G29260.1 CDS  gene_syn F28N24.6, F28N24_6, PEROXISOMAL TARGETING SIGNAL TYPE 2 RECEPTOR, PEX7  gene PEX7  function Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function.  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process protein targeting to peroxisome|GO:0006625|15548601|IMP  go_function peroxisome matrix targeting signal-2 binding|GO:0005053||ISS  go_function protein binding|GO:0005515|11978862|IPI  go_function protein binding|GO:0005515|16813573|IPI  product PEX7; peroxisome matrix targeting signal-2 binding / protein binding  note PEX7; FUNCTIONS IN: protein binding, peroxisome matrix targeting signal-2 binding; INVOLVED IN: protein targeting to peroxisome; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein binding (TAIR:AT5G58230.1); Has 35339 Blast hits to 19300 proteins in 528 species: Archae - 36; Bacteria - 3429; Metazoa - 16548; Fungi - 7388; Plants - 3368; Viruses - 0; Other Eukaryotes - 4570 (source: NCBI BLink).  protein_id AT1G29260.1p  transcript_id AT1G29260.1  protein_id AT1G29260.1p  transcript_id AT1G29260.1  
At1g29265	chr1:010227073	0.0	W/10227073-10227195	AT1G29265.1 miRNA  gene_syn MICRORNA399A, MIR399A  gene MIR399A  function Encodes a phosphate starvation-responsive microRNA that targets PHO2, an E2-UBC that negatively affects shoot phosphate content. miR399 can be negatively regulated by members of the non-coding gene families IPS1 and At4. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGCCAAAGGAGAUUUGCCCUG  product MIR399A (MICRORNA399A); miRNA  transcript_id AT1G29265.1  
At1g29270	chr1:010230319	0.0	W/10230319-10230435,10230767-10231021	AT1G29270.1 CDS  gene_syn F28N24.5, F28N24_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 50 Blast hits to 50 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29270.1p  transcript_id AT1G29270.1  protein_id AT1G29270.1p  transcript_id AT1G29270.1  
At1g29280	chr1:010236589	0.0	W/10236589-10236722,10236822-10237467	AT1G29280.1 CDS  gene_syn AtWRKY65, F28N24.4, F28N24_4, WRKY65  gene WRKY65  function member of WRKY Transcription Factor; Group II-e  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY65; transcription factor  note WRKY65; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY69; transcription factor (TAIR:AT3G58710.1); Has 2252 Blast hits to 1954 proteins in 165 species: Archae - 4; Bacteria - 56; Metazoa - 46; Fungi - 23; Plants - 1945; Viruses - 4; Other Eukaryotes - 174 (source: NCBI BLink).  protein_id AT1G29280.1p  transcript_id AT1G29280.1  protein_id AT1G29280.1p  transcript_id AT1G29280.1  
At1g29290	chr1:010245055	0.0	W/10245055-10245378	AT1G29290.1 CDS  gene_syn F28N24.30, F28N24_30  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29290.1p  transcript_id AT1G29290.1  protein_id AT1G29290.1p  transcript_id AT1G29290.1  
At1g29300	chr1:010248120	0.0	C/10248120-10249499	AT1G29300.1 CDS  gene_syn F28N24.3, F28N24_3, UNE1, unfertilized embryo sac 1  gene UNE1  go_process double fertilization forming a zygote and endosperm|GO:0009567|15634699|IMP  product UNE1 (unfertilized embryo sac 1)  note unfertilized embryo sac 1 (UNE1); INVOLVED IN: double fertilization forming a zygote and endosperm; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14870.3); Has 202 Blast hits to 202 proteins in 24 species: Archae - 0; Bacteria - 19; Metazoa - 3; Fungi - 2; Plants - 172; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G29300.1p  transcript_id AT1G29300.1  protein_id AT1G29300.1p  transcript_id AT1G29300.1  
At1g29310	chr1:010252662	0.0	W/10252662-10253005,10253079-10253306,10253416-10253770,10253856-10253980,10254065-10254200,10254287-10254526	AT1G29310.1 CDS  gene_syn F28N24.2, F28N24_2  go_component mitochondrion|GO:0005739|15276431|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process protein transport|GO:0015031||IEA  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||IEA  go_component membrane|GO:0016020||ISS  go_process protein secretion|GO:0009306||ISS  go_function P-P-bond-hydrolysis-driven protein transmembrane transporter activity|GO:0015450||ISS  product P-P-bond-hydrolysis-driven protein transmembrane transporter  note P-P-bond-hydrolysis-driven protein transmembrane transporter; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: protein transport protein sec61, putative (TAIR:AT2G34250.2); Has 2785 Blast hits to 2779 proteins in 1207 species: Archae - 193; Bacteria - 1623; Metazoa - 225; Fungi - 153; Plants - 68; Viruses - 0; Other Eukaryotes - 523 (source: NCBI BLink).  protein_id AT1G29310.1p  transcript_id AT1G29310.1  protein_id AT1G29310.1p  transcript_id AT1G29310.1  
At1g29320	chr1:010255355	0.0	W/10255355-10255436,10255514-10255629,10256176-10256205,10256312-10256448,10256546-10256725,10256825-10256888,10256991-10257098,10257173-10257326,10257408-10257497,10257621-10257676,10257753-10257810,10257907-10258238	AT1G29320.1 CDS  gene_syn F28N24.28, F28N24_28  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18223036|ISS  go_component CUL4 RING ubiquitin ligase complex|GO:0080008|18552200|ISS  go_process biological_process|GO:0008150||ND  go_function nucleotide binding|GO:0000166||ISS  product transducin family protein / WD-40 repeat family protein  note transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like (InterPro:IPR015943); Has 11024 Blast hits to 5089 proteins in 332 species: Archae - 23; Bacteria - 931; Metazoa - 4413; Fungi - 1329; Plants - 526; Viruses - 46; Other Eukaryotes - 3756 (source: NCBI BLink).  protein_id AT1G29320.1p  transcript_id AT1G29320.1  protein_id AT1G29320.1p  transcript_id AT1G29320.1  
At1g29330	chr1:010258580	0.0	C/10258580-10258616,10258705-10258768,10258855-10258928,10259328-10259443,10260151-10260416,10260816-10260906	AT1G29330.1 CDS  gene_syn AERD2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ATERD2, ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ERD2, F28N24.1  gene ERD2  function Encodes a protein similar in sequence to animal and yeast endoplasmic reticulum retention signal receptor. This protein can functionally complement the yeast homologue. Transcript is detected in flower buds, stems, root, and leaves.  go_component endoplasmic reticulum|GO:0005783|16244155|IDA  go_component Golgi apparatus|GO:0005794|16244155|IDA  go_component cis-Golgi network|GO:0005801|10972878|IDA  go_component integral to membrane|GO:0016021||ISS  go_process protein retention in ER lumen|GO:0006621|8248265|IGI  go_process protein transport|GO:0015031||ISS  go_function receptor activity|GO:0004872||ISS  go_function KDEL sequence binding|GO:0005046|8248265|IGI  product ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2); KDEL sequence binding / receptor  note ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2 (ERD2); FUNCTIONS IN: receptor activity, KDEL sequence binding; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane, endoplasmic reticulum, Golgi apparatus, cis-Golgi network; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor, putative / HDEL receptor, putative (TAIR:AT3G25040.1); Has 640 Blast hits to 639 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 121; Plants - 119; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).  protein_id AT1G29330.1p  transcript_id AT1G29330.1  protein_id AT1G29330.1p  transcript_id AT1G29330.1  
At1g29340	chr1:010264412	0.0	W/10264412-10266601	AT1G29340.1 CDS  gene_syn ARABIDOPSIS THALIANA PLANT U-BOX 17, ATPUB17, F15D2.34, F15D2_34, PLANT U-BOX 17, PUB17  gene PUB17  function Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato.  go_component ubiquitin ligase complex|GO:0000151||IEA  go_process apoptosis|GO:0006915|16531496|IGI  go_process defense response, incompatible interaction|GO:0009814|16531496|IMP  go_process defense response to fungus, incompatible interaction|GO:0009817|16531496|IGI  go_process protein ubiquitination|GO:0016567|16531496|IDA  go_function ubiquitin-protein ligase activity|GO:0004842|16531496|IDA  product PUB17 (PLANT U-BOX 17); ubiquitin-protein ligase  note PLANT U-BOX 17 (PUB17); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: defense response to fungus, incompatible interaction, defense response, incompatible interaction, apoptosis, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box (InterPro:IPR003613), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo/beta-catenin repeat family protein / U-box domain-containing protein (TAIR:AT5G01830.1); Has 2503 Blast hits to 2087 proteins in 180 species: Archae - 2; Bacteria - 16; Metazoa - 432; Fungi - 274; Plants - 1457; Viruses - 3; Other Eukaryotes - 319 (source: NCBI BLink).  protein_id AT1G29340.1p  transcript_id AT1G29340.1  protein_id AT1G29340.1p  transcript_id AT1G29340.1  
At1g29350	chr1:010268761	0.0	C/10268761-10269087,10269186-10269677,10269888-10270052,10270267-10270552,10270642-10270879,10271239-10271768,10272282-10272396,10272479-10272596,10273007-10273050,10273433-10273613	AT1G29350.1 CDS  gene_syn F15D2.27, F15D2_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: kinase-related (TAIR:AT1G29370.1); Has 13611 Blast hits to 7582 proteins in 387 species: Archae - 0; Bacteria - 354; Metazoa - 5683; Fungi - 1538; Plants - 892; Viruses - 68; Other Eukaryotes - 5076 (source: NCBI BLink).  protein_id AT1G29350.1p  transcript_id AT1G29350.1  protein_id AT1G29350.1p  transcript_id AT1G29350.1  
At1g29355	chr1:010274048	0.0	W/10274048-10274049,10274394-10275090,10275315-10275539	AT1G29355.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 28 Blast hits to 28 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 4; Plants - 0; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G29355.1p  transcript_id AT1G29355.1  protein_id AT1G29355.1p  transcript_id AT1G29355.1  
At1g29357	chr1:010274102	0.0	C/10274102-10275656	AT1G29357.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G29355  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G29357.1  
At1g29357	chr1:010274141	0.0	C/10274141-10275718	AT1G29357.2 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G29355  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G29357.2  
At1g29360	chr1:010275979	0.0	W/10275979-10277747	AT1G29360.1 mRNA_TE_gene  pseudo  gene_syn F15D2.40  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 2.1e-24 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g29370	chr1:010278080	0.0	C/10278080-10278406,10278505-10278996,10279207-10279371,10279586-10279871,10279961-10280198,10280556-10281085,10281695-10281809,10281890-10282007,10282418-10282461,10282844-10283024	AT1G29370.1 CDS  gene_syn F15D2.28, F15D2_28  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kinase-related  note kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29350.1); Has 13654 Blast hits to 7528 proteins in 391 species: Archae - 0; Bacteria - 391; Metazoa - 5624; Fungi - 1558; Plants - 888; Viruses - 71; Other Eukaryotes - 5122 (source: NCBI BLink).  protein_id AT1G29370.1p  transcript_id AT1G29370.1  protein_id AT1G29370.1p  transcript_id AT1G29370.1  
At1g29380	chr1:010284209	0.0	W/10284209-10284275,10284386-10284991,10285311-10285353,10285440-10285671	AT1G29380.1 CDS  gene_syn F15D2.1, F15D2_1  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30933.2); Has 72661 Blast hits to 25630 proteins in 1396 species: Archae - 121; Bacteria - 23698; Metazoa - 22516; Fungi - 4473; Plants - 9059; Viruses - 967; Other Eukaryotes - 11827 (source: NCBI BLink).  protein_id AT1G29380.1p  transcript_id AT1G29380.1  protein_id AT1G29380.1p  transcript_id AT1G29380.1  
At1g29390	chr1:010286409	0.0	C/10286409-10286574,10286659-10286728,10286982-10287046,10287173-10287268,10287514-10287654,10287736-10287878	AT1G29390.1 CDS  gene_syn COR314-TM2, F15D2.42  gene COR314-TM2  function encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane.  go_component chloroplast|GO:0009507||IEA  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product COR314-TM2  note COR314-TM2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: COR414-TM1 (TAIR:AT1G29395.1); Has 90 Blast hits to 89 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29390.1p  transcript_id AT1G29390.1  protein_id AT1G29390.1p  transcript_id AT1G29390.1  
At1g29390	chr1:010286409	0.0	C/10286409-10286574,10286659-10286728,10286982-10287046,10287173-10287268,10287514-10287668	AT1G29390.2 CDS  gene_syn COR314-TM2, F15D2.42  gene COR314-TM2  function encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane.  go_process response to stress|GO:0006950||ISS  go_function molecular_function|GO:0003674||ND  product COR314-TM2  note COR314-TM2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: COR414-TM1 (TAIR:AT1G29395.1); Has 90 Blast hits to 89 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29390.2p  transcript_id AT1G29390.2  protein_id AT1G29390.2p  transcript_id AT1G29390.2  
At1g29395	chr1:010288345	0.0	C/10288345-10288510,10288604-10288673,10288742-10288806,10288935-10289030,10289176-10289313,10289397-10289539	AT1G29395.1 CDS  gene_syn COR414-TM1  gene COR414-TM1  function encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|12746512|ISS  go_process cold acclimation|GO:0009631|12746512|IEP  go_process response to abscisic acid stimulus|GO:0009737|12746512|IEP  go_process cellular response to water deprivation|GO:0042631|12746512|IEP  go_function molecular_function|GO:0003674||ND  product COR414-TM1  note COR414-TM1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, cellular response to water deprivation, response to abscisic acid stimulus; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: COR314-TM2 (TAIR:AT1G29390.1); Has 91 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29395.1p  transcript_id AT1G29395.1  protein_id AT1G29395.1p  transcript_id AT1G29395.1  
At1g29400	chr1:010290393	0.0	C/10290393-10290470,10290600-10290782,10290867-10290935,10291015-10291099,10291194-10292097,10292175-10292263,10292346-10292497,10292589-10292705,10292798-10292956,10293054-10293493,10293570-10293696	AT1G29400.1 CDS  gene_syn AML5, ARABIDOPSIS MEI2-LIKE PROTEIN 5, F15D2.30, F15D2_30  gene AML5  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML5 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML5 is the transcript with highest frequency of alternative splicing. Expression was detected during embryo development (heart and torpedo stage) and in vegetative and floral apices.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding / nucleotide binding  note ARABIDOPSIS MEI2-LIKE PROTEIN 5 (AML5); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML3 (ARABIDOPSIS MEI2-LIKE 3); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G18120.2); Has 4835 Blast hits to 4269 proteins in 272 species: Archae - 4; Bacteria - 55; Metazoa - 2779; Fungi - 713; Plants - 677; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT1G29400.1p  transcript_id AT1G29400.1  protein_id AT1G29400.1p  transcript_id AT1G29400.1  
At1g29400	chr1:010290393	0.0	C/10290393-10290470,10290600-10290782,10290867-10290935,10291015-10291099,10291194-10292097,10292175-10292263,10292346-10292497,10292589-10292705,10292798-10292956,10293054-10293493,10293570-10293696	AT1G29400.2 CDS  gene_syn AML5, ARABIDOPSIS MEI2-LIKE PROTEIN 5, F15D2.30, F15D2_30  gene AML5  function A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML5 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML5 is the transcript with highest frequency of alternative splicing. Expression was detected during embryo development (heart and torpedo stage) and in vegetative and floral apices.  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_function RNA binding|GO:0003723||ISS  product AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding / nucleotide binding  note ARABIDOPSIS MEI2-LIKE PROTEIN 5 (AML5); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: AML3 (ARABIDOPSIS MEI2-LIKE 3); RNA binding / nucleic acid binding / nucleotide binding (TAIR:AT4G18120.2); Has 4835 Blast hits to 4269 proteins in 272 species: Archae - 4; Bacteria - 55; Metazoa - 2779; Fungi - 713; Plants - 677; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).  protein_id AT1G29400.2p  transcript_id AT1G29400.2  protein_id AT1G29400.2p  transcript_id AT1G29400.2  
At1g29410	chr1:010298662	0.0	C/10298662-10298701,10298838-10299001,10299092-10299456,10299581-10299643,10299921-10299930	AT1G29410.1 CDS  gene_syn F15D2.31, F15D2_31, PAI3, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, phosphoribosylanthranilate isomerase 3  gene PAI3  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process multicellular organismal development|GO:0007275|11346937|IMP  go_process response to UV|GO:0009411|11346937|IEP  go_process response to abiotic stimulus|GO:0009628|11346937|IEP  go_process growth|GO:0040007|11346937|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|ISS  product PAI3 (phosphoribosylanthranilate isomerase 3); phosphoribosylanthranilate isomerase  note phosphoribosylanthranilate isomerase 3 (PAI3); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process, multicellular organismal development, response to UV, growth, response to abiotic stimulus; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: N-(5&apos;phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase (TAIR:AT1G07780.4); Has 2542 Blast hits to 2542 proteins in 951 species: Archae - 25; Bacteria - 1667; Metazoa - 2; Fungi - 181; Plants - 51; Viruses - 0; Other Eukaryotes - 616 (source: NCBI BLink).  protein_id AT1G29410.1p  transcript_id AT1G29410.1  protein_id AT1G29410.1p  transcript_id AT1G29410.1  
At1g29410	chr1:010298705	0.0	C/10298705-10299001,10299092-10299456,10299581-10299643,10299921-10299930	AT1G29410.2 CDS  gene_syn F15D2.31, F15D2_31, PAI3, PHOSPHORIBOSYLANTHRANILATE ISOMERASE, phosphoribosylanthranilate isomerase 3  gene PAI3  function Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.  go_component chloroplast|GO:0009507|7890741|IDA  go_process tryptophan biosynthetic process|GO:0000162|7773017|TAS  go_process multicellular organismal development|GO:0007275|11346937|IMP  go_process response to UV|GO:0009411|11346937|IEP  go_process response to abiotic stimulus|GO:0009628|11346937|IEP  go_process growth|GO:0040007|11346937|IMP  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|IGI  go_function phosphoribosylanthranilate isomerase activity|GO:0004640|7773017|ISS  product PAI3 (phosphoribosylanthranilate isomerase 3); phosphoribosylanthranilate isomerase  note phosphoribosylanthranilate isomerase 3 (PAI3); FUNCTIONS IN: phosphoribosylanthranilate isomerase activity; INVOLVED IN: tryptophan biosynthetic process, multicellular organismal development, response to UV, growth, response to abiotic stimulus; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: N-(5&apos;phosphoribosyl)anthranilate isomerase (PRAI) (InterPro:IPR001240), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1); phosphoribosylanthranilate isomerase (TAIR:AT1G07780.4); Has 2554 Blast hits to 2554 proteins in 959 species: Archae - 25; Bacteria - 1683; Metazoa - 2; Fungi - 181; Plants - 51; Viruses - 0; Other Eukaryotes - 612 (source: NCBI BLink).  protein_id AT1G29410.2p  transcript_id AT1G29410.2  protein_id AT1G29410.2p  transcript_id AT1G29410.2  
At1g29418	chr1:010300886	0.0	W/10300886-10301152	AT1G29418.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G29418.1p  transcript_id AT1G29418.1  protein_id AT1G29418.1p  transcript_id AT1G29418.1  
At1g29420	chr1:010301483	0.0	C/10301483-10301908	AT1G29420.1 CDS  gene_syn F15D2.32, F15D2_32  go_component cellular_component|GO:0005575||ND  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR68 (SMALL AUXIN UPREGULATED 68) (TAIR:AT1G29510.1); Has 372 Blast hits to 362 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 372; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29420.1p  transcript_id AT1G29420.1  protein_id AT1G29420.1p  transcript_id AT1G29420.1  
At1g29430	chr1:010302801	0.0	C/10302801-10303226	AT1G29430.1 CDS  gene_syn F15D2.2, F15D2_2  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive family protein (TAIR:AT5G27780.1); Has 320 Blast hits to 311 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29430.1p  transcript_id AT1G29430.1  protein_id AT1G29430.1p  transcript_id AT1G29430.1  
At1g29440	chr1:010304571	0.0	C/10304571-10304996	AT1G29440.1 CDS  gene_syn F15D2.3, F15D2_3  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR68 (SMALL AUXIN UPREGULATED 68) (TAIR:AT1G29510.1); Has 327 Blast hits to 317 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 327; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29440.1p  transcript_id AT1G29440.1  protein_id AT1G29440.1p  transcript_id AT1G29440.1  
At1g29450	chr1:010305981	0.0	C/10305981-10306406	AT1G29450.1 CDS  gene_syn F15D2.4, F15D2_4  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT1G29500.1); Has 339 Blast hits to 329 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29450.1p  transcript_id AT1G29450.1  protein_id AT1G29450.1p  transcript_id AT1G29450.1  
At1g29460	chr1:010307609	0.0	C/10307609-10308055	AT1G29460.1 CDS  gene_syn F15D2.35, F15D2_35  go_component mitochondrion|GO:0005739||IEA  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29440.1); Has 389 Blast hits to 380 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 389; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29460.1p  transcript_id AT1G29460.1  protein_id AT1G29460.1p  transcript_id AT1G29460.1  
At1g29465	chr1:010309626	0.0	W/10309626-10309736	AT1G29465.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29465.1p  transcript_id AT1G29465.1  protein_id AT1G29465.1p  transcript_id AT1G29465.1  
At1g29470	chr1:010310424	0.0	C/10310424-10310652,10310743-10310937,10311023-10311292,10311382-10311556,10311648-10311758,10311846-10312116,10312205-10312354,10312458-10313369	AT1G29470.1 CDS  gene_syn F15D2.5, F15D2_5  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G34300.2); Has 60693 Blast hits to 25760 proteins in 1331 species: Archae - 209; Bacteria - 12823; Metazoa - 19500; Fungi - 5083; Plants - 2714; Viruses - 653; Other Eukaryotes - 19711 (source: NCBI BLink).  protein_id AT1G29470.1p  transcript_id AT1G29470.1  protein_id AT1G29470.1p  transcript_id AT1G29470.1  
At1g29470	chr1:010310424	0.0	C/10310424-10310652,10310743-10310937,10311023-10311292,10311382-10311556,10311648-10311758,10311846-10312116,10312205-10312354,10312458-10313369	AT1G29470.2 CDS  gene_syn F15D2.5, F15D2_5  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein-related  note dehydration-responsive protein-related; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: dehydration-responsive protein-related (TAIR:AT2G34300.2); Has 60693 Blast hits to 25760 proteins in 1331 species: Archae - 209; Bacteria - 12823; Metazoa - 19500; Fungi - 5083; Plants - 2714; Viruses - 653; Other Eukaryotes - 19711 (source: NCBI BLink).  protein_id AT1G29470.2p  transcript_id AT1G29470.2  protein_id AT1G29470.2p  transcript_id AT1G29470.2  
At1g29475	chr1:010315834	0.0	W/10315834-10317528	AT1G29475.1 mRNA_TE_gene  pseudo  gene_syn F15D2.41  note Transposable element gene, copia-like retrotransposon family, has a 1.8e-91 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)  
At1g29480	chr1:010317936	0.0	W/10317936-10318109,10318208-10318711	AT1G29480.1 CDS  gene_syn F15D2.6, F15D2_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 4 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G29480.1p  transcript_id AT1G29480.1  protein_id AT1G29480.1p  transcript_id AT1G29480.1  
At1g29490	chr1:010319835	0.0	W/10319835-10320143	AT1G29490.1 CDS  gene_syn F15D2.7, F15D2_7  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive family protein  note auxin-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: petal, male gametophyte, sepal, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29420.1); Has 338 Blast hits to 328 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29490.1p  transcript_id AT1G29490.1  protein_id AT1G29490.1p  transcript_id AT1G29490.1  
At1g29500	chr1:010321290	0.0	W/10321290-10321697	AT1G29500.1 CDS  gene_syn F15D2.8, F15D2_8  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleolus|GO:0005730|15610358|IDA  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product auxin-responsive protein, putative  note auxin-responsive protein, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT1G29450.1); Has 431 Blast hits to 421 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 431; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29500.1p  transcript_id AT1G29500.1  protein_id AT1G29500.1p  transcript_id AT1G29500.1  
At1g29510	chr1:010322683	0.0	W/10322683-10323114	AT1G29510.1 CDS  gene_syn F15D2.9, F15D2_9, SAUR68, SMALL AUXIN UPREGULATED 68  gene SAUR68  go_process response to auxin stimulus|GO:0009733||ISS  go_function molecular_function|GO:0003674||ND  product SAUR68 (SMALL AUXIN UPREGULATED 68)  note SMALL AUXIN UPREGULATED 68 (SAUR68); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29440.1); Has 358 Blast hits to 348 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29510.1p  transcript_id AT1G29510.1  protein_id AT1G29510.1p  transcript_id AT1G29510.1  
At1g29520	chr1:010323735	0.0	W/10323735-10323861,10324000-10324219,10324298-10324343,10324442-10324525	AT1G29520.1 CDS  gene_syn F15D2.10, F15D2_10  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product AWPM-19-like membrane family protein  note AWPM-19-like membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46530.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29520.1p  transcript_id AT1G29520.1  protein_id AT1G29520.1p  transcript_id AT1G29520.1  
At1g29530	chr1:010325553	0.0	C/10325553-10325645,10325725-10326266,10326576-10326651	AT1G29530.1 CDS  gene_syn F15D2.11, F15D2_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34310.3); Has 62 Blast hits to 61 proteins in 19 species: Archae - 2; Bacteria - 4; Metazoa - 10; Fungi - 8; Plants - 33; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G29530.1p  transcript_id AT1G29530.1  protein_id AT1G29530.1p  transcript_id AT1G29530.1  
At1g29540	chr1:010327269	0.0	W/10327269-10327382,10327475-10327846	AT1G29540.1 CDS  gene_syn F15D2.12, F15D2_12  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34330.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29540.1p  transcript_id AT1G29540.1  protein_id AT1G29540.1p  transcript_id AT1G29540.1  
At1g29550	chr1:010330514	0.0	W/10330514-10330827,10331230-10331395,10331491-10331616,10331898-10331963,10332044-10332094	AT1G29550.1 CDS  gene_syn F15D2.13, F15D2_13  go_component cytoplasm|GO:0005737||IEA  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cytoplasm|GO:0005737||ISS  go_process translational initiation|GO:0006413||ISS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative  note eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative (TAIR:AT1G29590.1); Has 1315 Blast hits to 1315 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 605; Fungi - 223; Plants - 238; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).  protein_id AT1G29550.1p  transcript_id AT1G29550.1  protein_id AT1G29550.1p  transcript_id AT1G29550.1  
At1g29560	chr1:010332647	0.0	W/10332647-10332715,10332799-10332951,10333170-10333361,10333431-10333748,10333822-10333857,10333938-10334024,10334106-10334177,10334253-10334381,10334537-10334620,10334705-10334941,10335034-10335285,10335421-10335510	AT1G29560.1 CDS  gene_syn F15D2.14, F15D2_14  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G29570.1); Has 9629 Blast hits to 6369 proteins in 427 species: Archae - 10; Bacteria - 522; Metazoa - 4464; Fungi - 543; Plants - 269; Viruses - 72; Other Eukaryotes - 3749 (source: NCBI BLink).  protein_id AT1G29560.1p  transcript_id AT1G29560.1  protein_id AT1G29560.1p  transcript_id AT1G29560.1  
At1g29560	chr1:010333467	0.0	W/10333467-10333748,10333849-10333857,10333938-10334024,10334106-10334177,10334253-10334381,10334537-10334620,10334705-10334941,10335034-10335285,10335421-10335510	AT1G29560.2 CDS  gene_syn F15D2.14, F15D2_14  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  product nucleic acid binding / zinc ion binding  note nucleic acid binding / zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G29570.1); Has 9868 Blast hits to 6255 proteins in 427 species: Archae - 12; Bacteria - 532; Metazoa - 4554; Fungi - 541; Plants - 152; Viruses - 81; Other Eukaryotes - 3996 (source: NCBI BLink).  protein_id AT1G29560.2p  transcript_id AT1G29560.2  protein_id AT1G29560.2p  transcript_id AT1G29560.2  
At1g29570	chr1:010335910	0.0	W/10335910-10335990,10336078-10336126,10336278-10336405,10336485-10336508,10336723-10336761,10336838-10336957,10337028-10337105,10337189-10337428,10337556-10337660,10337753-10337854	AT1G29570.1 CDS  gene_syn F15D2.36, F15D2_36  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product zinc finger protein-related  note zinc finger protein-related; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: nucleic acid binding / zinc ion binding (TAIR:AT1G29560.1); Has 36841 Blast hits to 17048 proteins in 927 species: Archae - 40; Bacteria - 3548; Metazoa - 16010; Fungi - 2827; Plants - 1388; Viruses - 207; Other Eukaryotes - 12821 (source: NCBI BLink).  protein_id AT1G29570.1p  transcript_id AT1G29570.1  protein_id AT1G29570.1p  transcript_id AT1G29570.1  
At1g29580	chr1:010338443	0.0	W/10338443-10338532,10338622-10338684,10338940-10338998,10339089-10339146	AT1G29580.1 CDS  gene_syn F15D2.15, F15D2_15  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29580.1p  transcript_id AT1G29580.1  protein_id AT1G29580.1p  transcript_id AT1G29580.1  
At1g29590	chr1:010339937	0.0	W/10339937-10340385,10340716-10340881,10340975-10341100,10341430-10341495,10341578-10341628	AT1G29590.1 CDS  gene_syn F15D2.16, F15D2_16  go_component cytoplasm|GO:0005737||IEA  go_process translational initiation|GO:0006413||IEA  go_function RNA binding|GO:0003723||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_component cytoplasm|GO:0005737||ISS  go_process translational initiation|GO:0006413||ISS  go_function RNA binding|GO:0003723||ISS  go_function translation initiation factor activity|GO:0003743||ISS  product eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative  note eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative (TAIR:AT1G29550.1); Has 1303 Blast hits to 1303 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 607; Fungi - 223; Plants - 238; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).  protein_id AT1G29590.1p  transcript_id AT1G29590.1  protein_id AT1G29590.1p  transcript_id AT1G29590.1  
At1g29600	chr1:010344046	0.0	W/10344046-10344168,10344250-10344417,10344497-10344685,10344773-10344811,10344995-10345075,10345216-10345293,10345372-10345473,10345568-10345651	AT1G29600.1 CDS  gene_syn F15D2.17, F15D2_17  go_function nucleic acid binding|GO:0003676||IEA  go_function zinc ion binding|GO:0008270||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: ZFN2 (ZINC FINGER NUCLEASE 2); DNA binding / nuclease/ nucleic acid binding (TAIR:AT2G32930.1); Has 462 Blast hits to 181 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 5; Plants - 449; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G29600.1p  transcript_id AT1G29600.1  protein_id AT1G29600.1p  transcript_id AT1G29600.1  
At1g29610	chr1:010345763	0.0	W/10345763-10346002,10346103-10346243	AT1G29610.1 CDS  gene_syn F15D2.18, F15D2_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT1G29570.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29610.1p  transcript_id AT1G29610.1  protein_id AT1G29610.1p  transcript_id AT1G29610.1  
At1g29620	chr1:010347363	0.0	W/10347363-10347424,10347529-10347585,10347680-10347798,10348634-10348683,10348865-10349017	AT1G29620.1 CDS  gene_syn F15D2.19, F15D2_19  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32720.1); Has 11 Blast hits to 11 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29620.1p  transcript_id AT1G29620.1  protein_id AT1G29620.1p  transcript_id AT1G29620.1  
At1g29630	chr1:010349587	0.0	W/10349587-10349747,10350117-10350236,10350355-10350478,10350579-10350716,10350861-10351070,10351245-10351420,10351506-10351578,10351674-10351797,10351985-10352145,10352222-10352276,10352365-10352891,10352992-10353037,10353149-10353359,10353457-10353538	AT1G29630.2 CDS  gene_syn F15D2.37, F15D2_37  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product DNA binding / catalytic/ nuclease  note DNA binding / catalytic/ nuclease; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: exonuclease, putative (TAIR:AT1G18090.2); Has 1812 Blast hits to 1629 proteins in 272 species: Archae - 190; Bacteria - 0; Metazoa - 554; Fungi - 461; Plants - 125; Viruses - 28; Other Eukaryotes - 454 (source: NCBI BLink).  protein_id AT1G29630.2p  transcript_id AT1G29630.2  protein_id AT1G29630.2p  transcript_id AT1G29630.2  
At1g29630	chr1:010349587	0.0	W/10349587-10349747,10350117-10350236,10350355-10350478,10350579-10350716,10351245-10351420,10351506-10351578,10351674-10351797,10351985-10352145,10352222-10352276,10352365-10352891,10352992-10353037,10353149-10353359,10353457-10353538	AT1G29630.1 CDS  gene_syn F15D2.37, F15D2_37  go_process DNA repair|GO:0006281||IEA  go_function nuclease activity|GO:0004518||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product nuclease  note nuclease; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: exonuclease, putative (TAIR:AT1G18090.2); Has 1708 Blast hits to 1461 proteins in 261 species: Archae - 194; Bacteria - 0; Metazoa - 542; Fungi - 468; Plants - 132; Viruses - 8; Other Eukaryotes - 364 (source: NCBI BLink).  protein_id AT1G29630.1p  transcript_id AT1G29630.1  protein_id AT1G29630.1p  transcript_id AT1G29630.1  
At1g29630	chr1:010350636	0.0	W/10350636-10350716,10350861-10351070,10351245-10351420,10351506-10351578,10351674-10351797,10351985-10352145,10352222-10352276,10352365-10352891,10352992-10353037,10353149-10353359,10353457-10353538	AT1G29630.3 CDS  gene_syn F15D2.37, F15D2_37  go_process DNA repair|GO:0006281||IEA  go_function DNA binding|GO:0003677||IEA  go_function catalytic activity|GO:0003824||IEA  go_function nuclease activity|GO:0004518||IEA  go_process DNA repair|GO:0006281||ISS  go_function nuclease activity|GO:0004518||ISS  product DNA binding / catalytic/ nuclease  note DNA binding / catalytic/ nuclease; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG I (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: exonuclease, putative (TAIR:AT1G18090.2); Has 759 Blast hits to 756 proteins in 166 species: Archae - 9; Bacteria - 0; Metazoa - 263; Fungi - 173; Plants - 74; Viruses - 9; Other Eukaryotes - 231 (source: NCBI BLink).  protein_id AT1G29630.3p  transcript_id AT1G29630.3  protein_id AT1G29630.3p  transcript_id AT1G29630.3  
At1g29640	chr1:010355959	0.0	C/10355959-10356381	AT1G29640.1 CDS  gene_syn F15D2.20, F15D2_20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34340.1); Has 201 Blast hits to 201 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 201; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29640.1p  transcript_id AT1G29640.1  protein_id AT1G29640.1p  transcript_id AT1G29640.1  
At1g29650	chr1:010357606	0.0	W/10357606-10363195	AT1G29650.1 mRNA_TE_gene  pseudo  gene_syn F15D2.38, F15D2_38  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.5e-28 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g29660	chr1:010371955	0.0	W/10371955-10372198,10372359-10372483,10372595-10372840,10373029-10373284,10373401-10373624	AT1G29660.1 CDS  gene_syn F15D2.21, F15D2_21  go_component nucleus|GO:0005634|14617066|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G29670.1); Has 2112 Blast hits to 2093 proteins in 271 species: Archae - 0; Bacteria - 436; Metazoa - 1; Fungi - 65; Plants - 1585; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).  protein_id AT1G29660.1p  transcript_id AT1G29660.1  protein_id AT1G29660.1p  transcript_id AT1G29660.1  
At1g29670	chr1:010375843	0.0	W/10375843-10376086,10376200-10376324,10376429-10376674,10377146-10377398,10377494-10377717	AT1G29670.1 CDS  gene_syn F15D2.22, F15D2_22  go_component cell wall|GO:0005618|15593128|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  product GDSL-motif lipase/hydrolase family protein  note GDSL-motif lipase/hydrolase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast, cell wall, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-motif lipase/hydrolase family protein (TAIR:AT1G29660.1); Has 1995 Blast hits to 1979 proteins in 221 species: Archae - 0; Bacteria - 342; Metazoa - 1; Fungi - 54; Plants - 1578; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G29670.1p  transcript_id AT1G29670.1  protein_id AT1G29670.1p  transcript_id AT1G29670.1  
At1g29680	chr1:010377900	0.0	C/10377900-10378156,10378392-10378589,10378673-10378931	AT1G29680.1 CDS  gene_syn F15D2.23, F15D2_23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45690.1); Has 188 Blast hits to 188 proteins in 83 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 43; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29680.1p  transcript_id AT1G29680.1  protein_id AT1G29680.1p  transcript_id AT1G29680.1  
At1g29690	chr1:010379310	0.0	C/10379310-10379933,10380019-10380173,10380260-10380443,10380552-10380747,10380956-10381194,10381574-10381861	AT1G29690.1 CDS  gene_syn CAD1, F15D2.24, F15D2_24, constitutively activated cell death 1  gene CAD1  function Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic <i>cad1-1</i> mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.  go_component cellular_component|GO:0005575||ND  go_process immune response|GO:0006955|15799997|IMP  go_process cell death|GO:0008219|15799997|IMP  product CAD1 (constitutively activated cell death 1)  note constitutively activated cell death 1 (CAD1); INVOLVED IN: immune response, cell death; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin/complement C9 (InterPro:IPR001862); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24290.2); Has 122 Blast hits to 121 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G29690.1p  transcript_id AT1G29690.1  protein_id AT1G29690.1p  transcript_id AT1G29690.1  
At1g29700	chr1:010385196	0.0	C/10385196-10385288,10385380-10385470,10385570-10385761,10385875-10385993,10386105-10386263,10386421-10386546,10386634-10386906	AT1G29700.1 CDS  gene_syn F15D2.25  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 321 Blast hits to 321 proteins in 85 species: Archae - 0; Bacteria - 142; Metazoa - 0; Fungi - 2; Plants - 20; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G29700.1p  transcript_id AT1G29700.1  protein_id AT1G29700.1p  transcript_id AT1G29700.1  
At1g29710	chr1:010387673	0.0	W/10387673-10389100	AT1G29710.1 CDS  gene_syn T3M22.4, T3M22_4  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G34370.1); Has 6277 Blast hits to 3387 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 6242; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).  protein_id AT1G29710.1p  transcript_id AT1G29710.1  protein_id AT1G29710.1p  transcript_id AT1G29710.1  
At1g29715	chr1:010389294	0.0	C/10389294-10392668	AT1G29715.1 pseudogenic_transcript  pseudo  gene_syn T3M22.7  note pseudogene, putative receptor-related serine/threonine kinase, blastp match of 67% identity and 2.6e-98 P-value to GP|8671882|gb|AAF78445.1|AC018748_24|AC018748 Contains a weak similarity to disease resistance protein (cf-5) gene from Lycopersicon esculentum gb|AF053993 and contains multiple leucine rich PF|00560 repeats and protein kinase PF|00069 domain. EST gb|T0-TRUNCATED-  
At1g29720	chr1:010393894	0.0	C/10393894-10394292,10394385-10394535,10394617-10394848,10394961-10395081	AT1G29720.1 CDS  gene_syn CELLULOSE SYNTHASE LIKE D2, CLSD2, T3M22.6, T3M22_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G29740.1); Has 78271 Blast hits to 77498 proteins in 1979 species: Archae - 42; Bacteria - 6853; Metazoa - 34055; Fungi - 6262; Plants - 17602; Viruses - 390; Other Eukaryotes - 13067 (source: NCBI BLink).  protein_id AT1G29720.1p  transcript_id AT1G29720.1  protein_id AT1G29720.1p  transcript_id AT1G29720.1  
At1g29720	chr1:010393894	0.0	C/10393894-10394292,10394385-10394535,10394617-10394848,10394961-10395171,10395245-10395363,10395447-10395581,10395698-10395718,10395957-10396152,10396255-10396326	AT1G29720.2 CDS  gene_syn CELLULOSE SYNTHASE LIKE D2, CLSD2, T3M22.6, T3M22_6  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function ATP binding|GO:0005524||IEA  go_component cellular_component|GO:0005575||ND  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G29740.1).  protein_id AT1G29720.2p  transcript_id AT1G29720.2  protein_id AT1G29720.2p  transcript_id AT1G29720.2  
At1g29724	chr1:010397740	0.0	C/10397740-10397815,10397913-10397978,10398062-10398133,10398221-10398292,10398352-10398384,10398491-10398562,10398674-10398745,10398830-10398901,10398980-10399051,10399219-10399290,10399383-10399572,10400413-10400452	AT1G29724.1 CDS  go_function protein binding|GO:0005515||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product protein binding  note protein binding; FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G29740.1); Has 37057 Blast hits to 11678 proteins in 571 species: Archae - 15; Bacteria - 2005; Metazoa - 4198; Fungi - 249; Plants - 28173; Viruses - 0; Other Eukaryotes - 2417 (source: NCBI BLink).  protein_id AT1G29724.1p  transcript_id AT1G29724.1  protein_id AT1G29724.1p  transcript_id AT1G29724.1  
At1g29730	chr1:010400710	0.0	C/10400710-10401051,10401127-10401280,10401361-10401595,10401686-10401896,10401982-10402100,10402387-10402428,10402512-10402707,10402799-10403187,10403272-10403315,10403391-10403432,10403512-10403562,10403656-10403724,10403818-10403880,10403963-10404034,10404130-10404198,10404306-10404377,10404471-10404542,10404636-10404707,10404814-10404885,10404985-10405056,10405137-10405208,10405306-10405377,10405469-10405646,10405745-10405874	AT1G29730.1 CDS  gene_syn T3M22.3  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function protein kinase activity|GO:0004672||IEA  go_function protein serine/threonine kinase activity|GO:0004674||IEA  go_function protein tyrosine kinase activity|GO:0004713||IEA  go_function protein binding|GO:0005515||IEA  go_function ATP binding|GO:0005524||IEA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function kinase activity|GO:0016301||ISS  product ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase  note ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591); BEST Arabidopsis thaliana protein match is: kinase (TAIR:AT1G29740.1); Has 129909 Blast hits to 97029 proteins in 3358 species: Archae - 75; Bacteria - 9779; Metazoa - 46063; Fungi - 7311; Plants - 48462; Viruses - 421; Other Eukaryotes - 17798 (source: NCBI BLink).  protein_id AT1G29730.1p  transcript_id AT1G29730.1  protein_id AT1G29730.1p  transcript_id AT1G29730.1  
At1g29740	chr1:010407379	0.0	C/10407379-10407604,10407817-10408151,10408242-10408395,10408481-10408712,10408835-10409045,10409131-10409222,10409297-10409455,10409559-10409579,10409657-10409852,10409945-10410333,10410423-10410466,10410543-10410584,10410662-10410712,10410808-10410876,10410960-10411022,10411117-10411188,10411287-10411355,10411444-10411515,10411597-10411668,10411757-10411828,10411943-10412014,10412121-10412192,10412272-10412343,10412436-10412507,10412587-10412764,10412868-10412997	AT1G29740.1 CDS  gene_syn F1N18.20, F1N18_20  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product kinase  note kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (TAIR:AT1G29730.1); Has 129099 Blast hits to 97103 proteins in 3362 species: Archae - 78; Bacteria - 9723; Metazoa - 44899; Fungi - 7533; Plants - 48679; Viruses - 430; Other Eukaryotes - 17757 (source: NCBI BLink).  protein_id AT1G29740.1p  transcript_id AT1G29740.1  protein_id AT1G29740.1p  transcript_id AT1G29740.1  
At1g29750	chr1:010414071	0.0	C/10414071-10414445,10414541-10414691,10414789-10415026,10415119-10415329,10415418-10415536,10415670-10415816,10415933-10416128,10416208-10416596,10416846-10416889,10417062-10417106,10417197-10417259,10417379-10417444,10417533-10417601,10417770-10417841,10417927-10417998,10418108-10418179,10418256-10418327,10418416-10418487,10418602-10418673,10418973-10419041,10419116-10419184,10419280-10419348,10419545-10419719,10420331-10420469	AT1G29750.2 CDS  gene_syn F1N18.19, F1N18_19, RECEPTOR-LIKE KINASE IN FLOWERS 1, RECEPTOR-LIKE SERINE/THREONINE KINASE, RKF1  gene RKF1  function Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674|9687063|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|9687063|ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / kinase/ protein serine/threonine kinase/ receptor signaling protein serine/threonine kinase  note RECEPTOR-LIKE KINASE IN FLOWERS 1 (RKF1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT3G14840.2); Has 115759 Blast hits to 90809 proteins in 3173 species: Archae - 71; Bacteria - 8917; Metazoa - 40797; Fungi - 6856; Plants - 42592; Viruses - 366; Other Eukaryotes - 16160 (source: NCBI BLink).  protein_id AT1G29750.2p  transcript_id AT1G29750.2  protein_id AT1G29750.2p  transcript_id AT1G29750.2  
At1g29750	chr1:010414071	0.0	C/10414071-10414445,10414541-10414691,10414789-10415026,10415119-10415329,10415418-10415536,10415670-10415816,10415933-10416128,10416208-10416596,10416846-10416889,10417062-10417106,10417197-10417259,10417379-10417444,10417533-10417601,10417770-10417841,10417927-10417998,10418108-10418179,10418256-10418327,10418416-10418487,10418602-10418673,10418973-10419041,10419116-10419184,10419280-10419348,10419545-10419813	AT1G29750.1 CDS  gene_syn F1N18.19, F1N18_19, RECEPTOR-LIKE KINASE IN FLOWERS 1, RECEPTOR-LIKE SERINE/THREONINE KINASE, RKF1  gene RKF1  function Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_function protein serine/threonine kinase activity|GO:0004674|9687063|IDA  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function receptor signaling protein serine/threonine kinase activity|GO:0004702|9687063|ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301||ISS  product RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / kinase/ protein serine/threonine kinase/ receptor signaling protein serine/threonine kinase  note RECEPTOR-LIKE KINASE IN FLOWERS 1 (RKF1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: leucine-rich repeat family protein / protein kinase family protein (TAIR:AT3G14840.2); Has 115801 Blast hits to 90810 proteins in 3173 species: Archae - 71; Bacteria - 8927; Metazoa - 40797; Fungi - 6856; Plants - 42623; Viruses - 366; Other Eukaryotes - 16161 (source: NCBI BLink).  protein_id AT1G29750.1p  transcript_id AT1G29750.1  protein_id AT1G29750.1p  transcript_id AT1G29750.1  
At1g29760	chr1:010422381	0.0	W/10422381-10423490,10423646-10424116	AT1G29760.1 CDS  gene_syn CELLULOSE SYNTHASE LIKE D4, CLSD4, F1N18.18, F1N18_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adipose-regulatory protein, Seipin (InterPro:IPR009617); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34380.1); Has 396 Blast hits to 327 proteins in 54 species: Archae - 0; Bacteria - 233; Metazoa - 115; Fungi - 10; Plants - 31; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G29760.1p  transcript_id AT1G29760.1  protein_id AT1G29760.1p  transcript_id AT1G29760.1  
At1g29770	chr1:010424806	0.0	W/10424806-10425642	AT1G29770.1 CDS  gene_syn CELLULOSE SYNTHASE LIKE D1, CLSD1, F1N18.17, F1N18_17  go_function phosphatase activity|GO:0016791||IEA  go_process biological_process|GO:0008150||ND  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT1G29780.1); Has 1909 Blast hits to 1909 proteins in 191 species: Archae - 0; Bacteria - 12; Metazoa - 723; Fungi - 344; Plants - 165; Viruses - 20; Other Eukaryotes - 645 (source: NCBI BLink).  protein_id AT1G29770.1p  transcript_id AT1G29770.1  protein_id AT1G29770.1p  transcript_id AT1G29770.1  
At1g29780	chr1:010426950	0.0	W/10426950-10427615	AT1G29780.1 CDS  gene_syn CELLULOSE SYNTHASE LIKE D5, CLSD5, F1N18.16, F1N18_16  go_component mitochondrion|GO:0005739||IEA  go_function phosphatase activity|GO:0016791||IEA  product NLI interacting factor (NIF) family protein  note NLI interacting factor (NIF) family protein; FUNCTIONS IN: phosphatase activity; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: NLI interacting factor (NIF) family protein (TAIR:AT1G29770.1); Has 1933 Blast hits to 1933 proteins in 182 species: Archae - 0; Bacteria - 12; Metazoa - 752; Fungi - 320; Plants - 172; Viruses - 9; Other Eukaryotes - 668 (source: NCBI BLink).  protein_id AT1G29780.1p  transcript_id AT1G29780.1  protein_id AT1G29780.1p  transcript_id AT1G29780.1  
At1g29785	chr1:010427613	0.0	C/10427613-10429083	AT1G29785.2 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G29780  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G29785.2  
At1g29785	chr1:010428509	0.0	C/10428509-10429133	AT1G29785.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G29780  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G29785.1  
At1g29790	chr1:010430025	0.0	W/10430025-10431161	AT1G29790.1 CDS  gene_syn CELLULOSE SYNTHASE LIKE C5, CLSC5, F1N18.26, F1N18_26  go_component plasma membrane|GO:0005886|17644812|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT5G40830.2); Has 127 Blast hits to 127 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29790.1p  transcript_id AT1G29790.1  protein_id AT1G29790.1p  transcript_id AT1G29790.1  
At1g29790	chr1:010430025	0.0	W/10430025-10431161	AT1G29790.2 CDS  gene_syn CELLULOSE SYNTHASE LIKE C5, CLSC5, F1N18.26, F1N18_26  go_component plasma membrane|GO:0005886|17644812|IDA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: methyltransferase (TAIR:AT5G40830.2); Has 127 Blast hits to 127 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29790.2p  transcript_id AT1G29790.2  protein_id AT1G29790.2p  transcript_id AT1G29790.2  
At1g29800	chr1:010432736	0.0	W/10432736-10432738,10433086-10433991,10434155-10434355,10434430-10434625,10434862-10435042,10435132-10435177	AT1G29800.1 CDS  gene_syn F1N18.15, F1N18_15  go_process signal transduction|GO:0007165|15358268|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding / zinc ion binding  note phosphoinositide binding / zinc ion binding; FUNCTIONS IN: phosphoinositide binding, zinc ion binding; INVOLVED IN: signal transduction; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: zinc finger (FYVE type) family protein (TAIR:AT3G43230.1); Has 2856 Blast hits to 2789 proteins in 224 species: Archae - 0; Bacteria - 155; Metazoa - 1698; Fungi - 436; Plants - 186; Viruses - 3; Other Eukaryotes - 378 (source: NCBI BLink).  protein_id AT1G29800.1p  transcript_id AT1G29800.1  protein_id AT1G29800.1p  transcript_id AT1G29800.1  
At1g29800	chr1:010432736	0.0	W/10432736-10432738,10433086-10433991,10434155-10434355,10434430-10434625,10434862-10435046	AT1G29800.2 CDS  gene_syn F1N18.15, F1N18_15  go_process signal transduction|GO:0007165|15358268|ISS  go_function zinc ion binding|GO:0008270||ISS  go_function phosphoinositide binding|GO:0035091|15358268|ISS  product phosphoinositide binding / zinc ion binding  note phosphoinositide binding / zinc ion binding; FUNCTIONS IN: phosphoinositide binding, zinc ion binding; INVOLVED IN: signal transduction; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: zinc finger (FYVE type) family protein (TAIR:AT3G43230.1); Has 2855 Blast hits to 2788 proteins in 224 species: Archae - 0; Bacteria - 155; Metazoa - 1698; Fungi - 436; Plants - 186; Viruses - 3; Other Eukaryotes - 377 (source: NCBI BLink).  protein_id AT1G29800.2p  transcript_id AT1G29800.2  protein_id AT1G29800.2p  transcript_id AT1G29800.2  
At1g29810	chr1:010435606	0.0	C/10435606-10435697,10435807-10435875,10436001-10436124,10436199-10436284,10436862-10436959,10437219-10437265,10437359-10437406	AT1G29810.1 CDS  gene_syn CELLULOSE SYNTHASE LIKE B5, F1N18.100, F1N18_100  go_process tetrahydrobiopterin biosynthetic process|GO:0006729||IEA  go_function 4-alpha-hydroxytetrahydrobiopterin dehydratase activity|GO:0008124||IEA  go_function dihydroxy-acid dehydratase activity|GO:0004160||ISS  product dehydratase family  note dehydratase family; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, dihydroxy-acid dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: 4-alpha-hydroxytetrahydrobiopterin dehydratase (TAIR:AT5G51110.1); Has 3240 Blast hits to 3238 proteins in 657 species: Archae - 39; Bacteria - 1216; Metazoa - 166; Fungi - 12; Plants - 43; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).  protein_id AT1G29810.1p  transcript_id AT1G29810.1  protein_id AT1G29810.1p  transcript_id AT1G29810.1  
At1g29820	chr1:010438219	0.0	W/10438219-10438857,10439107-10439295,10439412-10439503,10439638-10439697,10439779-10439848,10439963-10440166,10440257-10440625	AT1G29820.1 CDS  gene_syn CELLULOSE SYNTHASE LIKE B4, CSLB4, F1N18.14, F1N18_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29830.1); Has 257 Blast hits to 257 proteins in 116 species: Archae - 0; Bacteria - 201; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G29820.1p  transcript_id AT1G29820.1  protein_id AT1G29820.1p  transcript_id AT1G29820.1  
At1g29820	chr1:010438219	0.0	W/10438219-10438857,10439107-10439295,10439412-10439503,10439638-10439697,10439779-10439848,10439963-10440166,10440257-10440625	AT1G29820.2 CDS  gene_syn CELLULOSE SYNTHASE LIKE B4, CSLB4, F1N18.14, F1N18_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29830.1); Has 257 Blast hits to 257 proteins in 116 species: Archae - 0; Bacteria - 201; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).  protein_id AT1G29820.2p  transcript_id AT1G29820.2  protein_id AT1G29820.2p  transcript_id AT1G29820.2  
At1g29830	chr1:010441053	0.0	W/10441053-10441185,10442209-10442798,10443519-10443707,10443821-10443912,10444146-10444205,10444294-10444363,10444486-10444689,10444761-10445129	AT1G29830.3 CDS  gene_syn F1N18.13, F1N18_13  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29820.2).  protein_id AT1G29830.3p  transcript_id AT1G29830.3  protein_id AT1G29830.3p  transcript_id AT1G29830.3  
At1g29830	chr1:010442181	0.0	W/10442181-10442798,10443519-10443707,10443821-10443912,10444146-10444205,10444294-10444363,10444486-10444689,10444761-10444882,10444960-10444999	AT1G29830.2 CDS  gene_syn F1N18.13, F1N18_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29820.2); Has 71 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G29830.2p  transcript_id AT1G29830.2  protein_id AT1G29830.2p  transcript_id AT1G29830.2  
At1g29830	chr1:010442181	0.0	W/10442181-10442798,10443519-10443707,10443821-10443912,10444146-10444205,10444294-10444363,10444486-10444689,10444761-10445129	AT1G29830.1 CDS  gene_syn F1N18.13, F1N18_13  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29820.2); Has 152 Blast hits to 152 proteins in 65 species: Archae - 0; Bacteria - 106; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).  protein_id AT1G29830.1p  transcript_id AT1G29830.1  protein_id AT1G29830.1p  transcript_id AT1G29830.1  
At1g29840	chr1:010445735	0.0	C/10445735-10445924,10446002-10446095,10446180-10446338,10446438-10446559,10446645-10446727,10447279-10447422	AT1G29840.1 CDS  gene_syn F1N18.12, F1N18_12  go_function catalytic activity|GO:0003824||ISS  product esterase/lipase/thioesterase family protein  note esterase/lipase/thioesterase family protein; FUNCTIONS IN: catalytic activity; BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G47560.1); Has 2153 Blast hits to 2152 proteins in 431 species: Archae - 25; Bacteria - 868; Metazoa - 5; Fungi - 50; Plants - 119; Viruses - 2; Other Eukaryotes - 1084 (source: NCBI BLink).  protein_id AT1G29840.1p  transcript_id AT1G29840.1  protein_id AT1G29840.1p  transcript_id AT1G29840.1  
At1g29850	chr1:010447866	0.0	W/10447866-10447868,10448680-10448745,10448846-10448907,10449005-10449069,10449180-10449271,10449409-10449480,10449598-10449630	AT1G29850.2 CDS  gene_syn F1N18.11, F1N18_11  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function double-stranded DNA binding|GO:0003690||ISS  product double-stranded DNA-binding family protein  note double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 498 Blast hits to 498 proteins in 233 species: Archae - 166; Bacteria - 0; Metazoa - 120; Fungi - 83; Plants - 30; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G29850.2p  transcript_id AT1G29850.2  protein_id AT1G29850.2p  transcript_id AT1G29850.2  
At1g29850	chr1:010447866	0.0	W/10447866-10447868,10448680-10448745,10448849-10448907,10449005-10449069,10449180-10449271,10449409-10449480,10449598-10449630	AT1G29850.1 CDS  gene_syn F1N18.11, F1N18_11  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function double-stranded DNA binding|GO:0003690||ISS  product double-stranded DNA-binding family protein  note double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836); Has 495 Blast hits to 495 proteins in 234 species: Archae - 166; Bacteria - 2; Metazoa - 117; Fungi - 83; Plants - 30; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).  protein_id AT1G29850.1p  transcript_id AT1G29850.1  protein_id AT1G29850.1p  transcript_id AT1G29850.1  
At1g29850	chr1:010447866	0.0	W/10447866-10447868,10448680-10448745,10448849-10448907,10449005-10449069,10449180-10449271,10449409-10449485,10449598-10449691	AT1G29850.3 CDS  gene_syn F1N18.11, F1N18_11  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function double-stranded DNA binding|GO:0003690||ISS  product double-stranded DNA-binding family protein  note double-stranded DNA-binding family protein; FUNCTIONS IN: double-stranded DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding TFAR19-related protein (InterPro:IPR002836).  protein_id AT1G29850.3p  transcript_id AT1G29850.3  protein_id AT1G29850.3p  transcript_id AT1G29850.3  
At1g29860	chr1:010454482	0.0	W/10454482-10454801,10454995-10455141,10455271-10455652	AT1G29860.1 CDS  gene_syn AtWRKY71, F1N18.10, F1N18_10, WRKY71  gene WRKY71  function member of WRKY Transcription Factor; Group II-c  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY71; transcription factor  note WRKY71; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY28; transcription factor (TAIR:AT4G18170.1); Has 2033 Blast hits to 1744 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2020; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G29860.1p  transcript_id AT1G29860.1  protein_id AT1G29860.1p  transcript_id AT1G29860.1  
At1g29870	chr1:010456902	0.0	C/10456902-10456991,10457065-10457124,10457215-10457439,10457527-10457724,10457810-10457927,10457998-10458377,10458462-10458782	AT1G29870.1 CDS  gene_syn CELLULOSE SYNTHASE LIKE D3, CLSD3, F1N18.9, F1N18_9  go_component cytoplasm|GO:0005737||IEA  go_process translation|GO:0006412||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||IEA  go_process glycyl-tRNA aminoacylation|GO:0006426||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function glycine-tRNA ligase activity|GO:0004820||IEA  go_function ATP binding|GO:0005524||IEA  go_process tRNA aminoacylation for protein translation|GO:0006418||ISS  go_function aminoacyl-tRNA ligase activity|GO:0004812||ISS  go_function ATP binding|GO:0005524||ISS  product tRNA synthetase class II (G, H, P and S) family protein  note tRNA synthetase class II (G, H, P and S) family protein; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: glycyl-tRNA synthetase / glycine--tRNA ligase (TAIR:AT1G29880.1); Has 2537 Blast hits to 2522 proteins in 623 species: Archae - 136; Bacteria - 771; Metazoa - 133; Fungi - 119; Plants - 32; Viruses - 0; Other Eukaryotes - 1346 (source: NCBI BLink).  protein_id AT1G29870.1p  transcript_id AT1G29870.1  protein_id AT1G29870.1p  transcript_id AT1G29870.1  
At1g29880	chr1:010459662	0.0	C/10459662-10459894,10459985-10460390,10460486-10460566,10460639-10460698,10460828-10461052,10461157-10461351,10461460-10461577,10461662-10462044,10462293-10462781	AT1G29880.1 CDS  gene_syn CELLULOSE SYNTHASE LIKE C12, CLSC12, F1N18.8, F1N18_8  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function nucleotide binding|GO:0000166||IEA  go_function aminoacyl-tRNA ligase activity|GO:0004812||IEA  go_function glycine-tRNA ligase activity|GO:0004820||IEA  go_function ATP binding|GO:0005524||IEA  go_component mitochondrion|GO:0005739|16251277|IDA  go_process glycyl-tRNA aminoacylation|GO:0006426||ISS  go_function glycine-tRNA ligase activity|GO:0004820||ISS  product glycyl-tRNA synthetase / glycine--tRNA ligase  note glycyl-tRNA synthetase / glycine--tRNA ligase; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: response to cadmium ion, glycyl-tRNA aminoacylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G, H, P and S), conserved region (InterPro:IPR002314), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved region (InterPro:IPR006195), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), Anticodon-binding (InterPro:IPR004154), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: tRNA synthetase class II (G, H, P and S) family protein (TAIR:AT1G29870.1); Has 4267 Blast hits to 3231 proteins in 634 species: Archae - 169; Bacteria - 1528; Metazoa - 158; Fungi - 116; Plants - 33; Viruses - 0; Other Eukaryotes - 2263 (source: NCBI BLink).  protein_id AT1G29880.1p  transcript_id AT1G29880.1  protein_id AT1G29880.1p  transcript_id AT1G29880.1  
At1g29890	chr1:010463532	0.0	W/10463532-10463579,10464111-10464202,10464320-10464457,10464544-10464600,10464676-10464748,10464932-10465090,10465263-10465785,10465932-10466047,10466127-10466213,10466307-10466395,10466501-10466563,10466647-10466703,10466821-10466917,10466998-10467153	AT1G29890.2 CDS  gene_syn CELLULOSE SYNTHASE LIKE C4, CLSC4, F1N18.7, F1N18_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product acetyltransferase-related  note acetyltransferase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cas1p-like (InterPro:IPR012419); BEST Arabidopsis thaliana protein match is: O-acetyltransferase family protein (TAIR:AT2G34410.2); Has 188 Blast hits to 184 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 25; Plants - 57; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G29890.2p  transcript_id AT1G29890.2  protein_id AT1G29890.2p  transcript_id AT1G29890.2  
At1g29890	chr1:010464491	0.0	W/10464491-10464600,10464676-10464748,10464932-10465090,10465263-10465412,10465530-10465785,10465932-10466047,10466127-10466213,10466307-10466395,10466501-10466563,10466647-10466703,10466821-10466917,10466998-10467153	AT1G29890.1 CDS  gene_syn CELLULOSE SYNTHASE LIKE C4, CLSC4, F1N18.7, F1N18_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product acetyltransferase-related  note acetyltransferase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cas1p-like (InterPro:IPR012419); BEST Arabidopsis thaliana protein match is: O-acetyltransferase family protein (TAIR:AT2G34410.2); Has 186 Blast hits to 184 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 25; Plants - 57; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G29890.1p  transcript_id AT1G29890.1  protein_id AT1G29890.1p  transcript_id AT1G29890.1  
At1g29900	chr1:010468164	0.0	W/10468164-10469510,10469656-10470348,10470453-10471976	AT1G29900.1 CDS  gene_syn CARB, CARBAMOYL PHOSPHATE SYNTHETASE B, CARBAMOYL PHOSPHATE SYNTHETASE LARGE SUBUNIT, CELLULOSE SYNTHASE LIKE B6, CLSB6, F1N18.6, F1N18_6  gene CARB  function carbamoyl phosphate synthetase large chain (CARB) mRNA,  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component membrane|GO:0016020|17432890|IDA  go_function catalytic activity|GO:0003824||IEA  go_function carbamoyl-phosphate synthase activity|GO:0004086||IEA  go_function ATP binding|GO:0005524||IEA  go_process arginine biosynthetic process|GO:0006526|16545809|NAS  go_function carbamoyl-phosphate synthase activity|GO:0004086||ISS  go_function ATP binding|GO:0005524||ISS  product CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase/ catalytic  note CARBAMOYL PHOSPHATE SYNTHETASE B (CARB); FUNCTIONS IN: carbamoyl-phosphate synthase activity, catalytic activity, ATP binding; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), MGS-like (InterPro:IPR011607), PreATP-grasp-like fold (InterPro:IPR016185), Carbamoyl phosphate synthetase, large subunit, oligomerisation (InterPro:IPR005480), Carbamoyl phosphate synthase, large subunit, glutamine-dependent (InterPro:IPR006275), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Carbamoyl phosphate synthase, large subunit (InterPro:IPR005483), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: MCCA; methylcrotonoyl-CoA carboxylase (TAIR:AT1G03090.2); Has 34717 Blast hits to 20742 proteins in 2695 species: Archae - 428; Bacteria - 11731; Metazoa - 3334; Fungi - 684; Plants - 273; Viruses - 0; Other Eukaryotes - 18267 (source: NCBI BLink).  protein_id AT1G29900.1p  transcript_id AT1G29900.1  protein_id AT1G29900.1p  transcript_id AT1G29900.1  
At1g29910	chr1:010472443	0.0	C/10472443-10473246	AT1G29910.1 CDS  gene_syn AB180, CAB3, CELLULOSE SYNTHASE LIKE B3, CHLOROPHYLL A/B BINDING PROTEIN 3, CSLB3, F1N18.5, LHCB1.2, LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2  gene CAB3  function member of Chlorophyll a/b-binding protein family  go_component mitochondrion|GO:0005739|15276431|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_process photosynthesis, light harvesting|GO:0009765||IEA  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168|2204948|TAS  go_function chlorophyll binding|GO:0016168||ISS  product CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding  note CHLOROPHYLL A/B BINDING PROTEIN 3 (CAB3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: cotyledon, guard cell, juvenile leaf, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding (TAIR:AT1G29920.1); Has 1799 Blast hits to 1721 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1555; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT1G29910.1p  transcript_id AT1G29910.1  protein_id AT1G29910.1p  transcript_id AT1G29910.1  
At1g29920	chr1:010475089	0.0	C/10475089-10475892	AT1G29920.1 CDS  gene_syn AB165, CAB2, CHLOROPHYLL A/B-BINDING PROTEIN 2, F1N18.4, F1N18_4, LHCB1.1, LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1  gene CAB2  function Encodes lhcb1.1 a component of the LHCIIb light harvesting complex associated with photosystem II.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process response to blue light|GO:0009637|18820083|IEP  go_process response to red light|GO:0010114|18820083|IEP  go_process response to far red light|GO:0010218|18820083|IEP  go_process photosynthesis|GO:0015979||ISS  go_function chlorophyll binding|GO:0016168|2204948|TAS  go_function chlorophyll binding|GO:0016168||ISS  product CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding  note CHLOROPHYLL A/B-BINDING PROTEIN 2 (CAB2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast; EXPRESSED IN: 13 plant structures; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding (TAIR:AT1G29910.1); Has 1799 Blast hits to 1721 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1555; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).  protein_id AT1G29920.1p  transcript_id AT1G29920.1  protein_id AT1G29920.1p  transcript_id AT1G29920.1  
At1g29930	chr1:010478071	0.0	W/10478071-10478874	AT1G29930.1 CDS  gene_syn AB140, CAB1, CAB140, CELLULOSE SYNTHASE LIKE C8, CHLOROPHYLL A/B BINDING PROTEIN 1, CHLOROPHYLL A/B PROTEIN 140, CLSC8, F1N18.3, F1N18_3, LHCB1.3, LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3  gene CAB1  function Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component light-harvesting complex|GO:0030076||ISS  go_process photosynthesis|GO:0015979|3012462|ISS  go_function chlorophyll binding|GO:0016168|12232164|TAS  go_function chlorophyll binding|GO:0016168||ISS  product CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding  note CHLOROPHYLL A/B BINDING PROTEIN 1 (CAB1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: guard cell, juvenile leaf, cultured cell; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding (TAIR:AT1G29920.1); Has 1798 Blast hits to 1720 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1555; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).  protein_id AT1G29930.1p  transcript_id AT1G29930.1  protein_id AT1G29930.1p  transcript_id AT1G29930.1  
At1g29940	chr1:010479322	0.0	C/10479322-10479744,10479855-10480109,10480271-10480483,10480558-10480698,10480806-10480931,10481204-10481279,10481377-10481480,10481588-10481662,10481736-10481900,10481985-10482140,10482228-10482469,10482909-10482988,10483088-10483215,10483329-10483444,10483640-10483727,10483924-10484041,10484128-10484201,10484474-10484526,10484601-10484781,10484942-10484987,10485073-10485150,10485265-10485335,10485467-10485530,10485778-10485854,10486099-10486218,10486308-10486393,10486490-10486670	AT1G29940.1 CDS  gene_syn F1N18.2, NRPA2  gene NRPA2  function Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).  go_component nucleus|GO:0005634||IEA  go_process transcription|GO:0006350||IEA  go_function DNA binding|GO:0003677||IEA  go_function DNA-directed RNA polymerase activity|GO:0003899||IEA  go_function ribonucleoside binding|GO:0032549||IEA  go_process transcription|GO:0006350||ISS  go_function DNA-directed RNA polymerase activity|GO:0003899||ISS  product NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding  note NRPA2; FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding (TAIR:AT5G45140.1); Has 13869 Blast hits to 13448 proteins in 4504 species: Archae - 270; Bacteria - 4634; Metazoa - 391; Fungi - 2384; Plants - 1358; Viruses - 213; Other Eukaryotes - 4619 (source: NCBI BLink).  protein_id AT1G29940.1p  transcript_id AT1G29940.1  protein_id AT1G29940.1p  transcript_id AT1G29940.1  
At1g29952	chr1:010492498	0.0	W/10492498-10492575	AT1G29952.1 CDS  gene_syn CPuORF34, Conserved peptide upstream open reading frame 34  gene CPuORF34  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF34 represents a conserved upstream opening reading frame relative to major ORF AT1G29950.2  product CPuORF34 (Conserved peptide upstream open reading frame 34)  note Conserved peptide upstream open reading frame 34 (CPuORF34); Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G29952.1p  transcript_id AT1G29952.1  protein_id AT1G29952.1p  transcript_id AT1G29952.1  
At1g29951	chr1:010492790	0.0	W/10492790-10492897,10493066-10493104	AT1G29951.1 CDS  gene_syn CPuORF35, Conserved peptide upstream open reading frame 35  gene CPuORF35  function Upstream open reading frames (uORFs) are small open reading frames found in the 5  UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF35 represents a conserved upstream opening reading frame relative to major ORF AT1G29950.2  product CPuORF35 (Conserved peptide upstream open reading frame 35)  note Conserved peptide upstream open reading frame 35 (CPuORF35); Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29951.1p  transcript_id AT1G29951.1  protein_id AT1G29951.1p  transcript_id AT1G29951.1  
At1g29950	chr1:010493461	0.0	W/10493461-10494216	AT1G29950.1 CDS  gene_syn T1P2.2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription regulator activity|GO:0030528|12897250|TAS  product transcription factor/ transcription regulator  note transcription factor/ transcription regulator; FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); Has 669 Blast hits to 563 proteins in 55 species: Archae - 0; Bacteria - 2; Metazoa - 111; Fungi - 22; Plants - 211; Viruses - 2; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT1G29950.1p  transcript_id AT1G29950.1  protein_id AT1G29950.1p  transcript_id AT1G29950.1  
At1g29950	chr1:010493461	0.0	W/10493461-10494216	AT1G29950.2 CDS  gene_syn T1P2.2  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription regulator activity|GO:0030528|12897250|TAS  product transcription factor/ transcription regulator  note transcription factor/ transcription regulator; FUNCTIONS IN: transcription factor activity, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); Has 669 Blast hits to 563 proteins in 55 species: Archae - 0; Bacteria - 2; Metazoa - 111; Fungi - 22; Plants - 211; Viruses - 2; Other Eukaryotes - 321 (source: NCBI BLink).  protein_id AT1G29950.2p  transcript_id AT1G29950.2  protein_id AT1G29950.2p  transcript_id AT1G29950.2  
At1g29960	chr1:010494813	0.0	W/10494813-10494938,10495027-10495251,10495565-10495675,10495804-10495851	AT1G29960.1 CDS  gene_syn AGAMOUS-LIKE 64, AGL64, T1P2.16, T1P2_16  go_component membrane|GO:0016020||IEA  go_process proteolysis|GO:0006508||IEA  go_function serine-type peptidase activity|GO:0008236||IEA  go_component membrane|GO:0016020||ISS  go_process proteolysis|GO:0006508||ISS  go_function peptidase activity|GO:0008233||ISS  product peptidase/ serine-type peptidase  note peptidase/ serine-type peptidase; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056), Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A (InterPro:IPR014037); BEST Arabidopsis thaliana protein match is: signal peptidase-related (TAIR:AT1G23465.1); Has 2938 Blast hits to 2935 proteins in 757 species: Archae - 0; Bacteria - 1866; Metazoa - 211; Fungi - 145; Plants - 138; Viruses - 0; Other Eukaryotes - 578 (source: NCBI BLink).  protein_id AT1G29960.1p  transcript_id AT1G29960.1  protein_id AT1G29960.1p  transcript_id AT1G29960.1  
At1g29962	chr1:010496730	0.0	W/10496730-10497287	AT1G29962.1 CDS  gene_syn AGAMOUS-LIKE 64, AGL64  gene AGL64  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL64 (AGAMOUS-LIKE 64); transcription factor  note AGAMOUS-LIKE 64 (AGL64); FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL59 (AGAMOUS-LIKE 59); DNA binding / transcription factor (TAIR:AT1G28460.1); Has 3791 Blast hits to 3791 proteins in 514 species: Archae - 0; Bacteria - 0; Metazoa - 521; Fungi - 174; Plants - 3059; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).  protein_id AT1G29962.1p  transcript_id AT1G29962.1  protein_id AT1G29962.1p  transcript_id AT1G29962.1  
At1g29965	chr1:010498458	0.0	C/10498458-10498799,10498970-10499033,10499129-10499244,10499359-10499373	AT1G29965.1 CDS  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component ribosome|GO:0005840||ISS  go_component cytosolic large ribosomal subunit|GO:0022625|17934214|IDA  go_process translation|GO:0006412||ISS  go_process ribosome biogenesis|GO:0042254||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product 60S ribosomal protein L18A  (RPL18aA)  note 60S ribosomal protein L18A (RPL18aA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic large ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18ae (InterPro:IPR002670); BEST Arabidopsis thaliana protein match is: RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome (TAIR:AT1G29970.2); Has 545 Blast hits to 543 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 102; Plants - 93; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G29965.1p  transcript_id AT1G29965.1  protein_id AT1G29965.1p  transcript_id AT1G29965.1  
At1g29970	chr1:010498458	0.0	C/10498458-10498799,10498970-10499033,10499129-10499244,10500120-10500234,10500819-10500894,10501004-10501054,10501137-10501311	AT1G29970.2 CDS  gene_syn 60S RIBOSOMAL PROTEIN L18A-1, RPL18AA, T1P2.8, T1P2_8  gene RPL18AA  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  product RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome  note 60S RIBOSOMAL PROTEIN L18A-1 (RPL18AA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18ae (InterPro:IPR002670); BEST Arabidopsis thaliana protein match is: 60S ribosomal protein L18A (RPL18aA) (TAIR:AT1G29965.1); Has 615 Blast hits to 613 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 102; Plants - 163; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).  protein_id AT1G29970.2p  transcript_id AT1G29970.2  protein_id AT1G29970.2p  transcript_id AT1G29970.2  
At1g29970	chr1:010499952	0.0	C/10499952-10500011,10500120-10500234,10500492-10500574,10500673-10500715,10500819-10500894,10501004-10501054,10501137-10501311	AT1G29970.3 CDS  gene_syn 60S RIBOSOMAL PROTEIN L18A-1, RPL18AA, T1P2.8, T1P2_8  gene RPL18AA  product RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)  note 60S RIBOSOMAL PROTEIN L18A-1 (RPL18AA); EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17080.1).  protein_id AT1G29970.3p  transcript_id AT1G29970.3  protein_id AT1G29970.3p  transcript_id AT1G29970.3  
At1g29970	chr1:010499952	0.0	C/10499952-10500011,10500120-10500234,10500819-10500894,10501004-10501054,10501137-10501311	AT1G29970.1 CDS  gene_syn 60S RIBOSOMAL PROTEIN L18A-1, RPL18AA, T1P2.8, T1P2_8  gene RPL18AA  product RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)  note 60S RIBOSOMAL PROTEIN L18A-1 (RPL18AA); EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17080.1); Has 75 Blast hits to 75 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29970.1p  transcript_id AT1G29970.1  protein_id AT1G29970.1p  transcript_id AT1G29970.1  
At1g29980	chr1:010503411	0.0	C/10503411-10503994,10504086-10504610,10505880-10505994	AT1G29980.1 CDS  gene_syn T1P2.9, T1P2_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34510.1); Has 180 Blast hits to 163 proteins in 15 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29980.1p  transcript_id AT1G29980.1  protein_id AT1G29980.1p  transcript_id AT1G29980.1  
At1g29980	chr1:010503411	0.0	C/10503411-10503994,10504086-10504617	AT1G29980.2 CDS  gene_syn T1P2.9, T1P2_9  go_component plasma membrane|GO:0005886|17317660|IDA  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_process biological_process|GO:0008150||ND  product unknown protein  note INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34510.1); Has 174 Blast hits to 163 proteins in 15 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G29980.2p  transcript_id AT1G29980.2  protein_id AT1G29980.2p  transcript_id AT1G29980.2  
At1g29990	chr1:010507666	0.0	W/10507666-10507741,10507836-10507906,10508026-10508150,10508388-10508448,10508765-10508821	AT1G29990.1 CDS  gene_syn PDF6, PREFOLDIN 6, T1P2.3, T1P2_3  gene PDF6  function Encodes a cytoplastic protein with similarity to yeast prefoldin6, a subunit of the prefoldin complex. The PFD complex is thought to function along with the TCP ring complex to properly fold microtubule proteins.  go_function unfolded protein binding|GO:0051082||IEA  go_component cytoplasm|GO:0005737|19004800|IDA  go_component prefoldin complex|GO:0016272|19004800|IPI  go_process protein folding|GO:0006457||ISS  go_process cortical microtubule organization|GO:0043622|19004800|IMP  product PDF6 (PREFOLDIN 6); unfolded protein binding  note PREFOLDIN 6 (PDF6); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: cortical microtubule organization, protein folding; LOCATED IN: prefoldin complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 341 Blast hits to 341 proteins in 165 species: Archae - 40; Bacteria - 4; Metazoa - 132; Fungi - 77; Plants - 19; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).  protein_id AT1G29990.1p  transcript_id AT1G29990.1  protein_id AT1G29990.1p  transcript_id AT1G29990.1  
At1g30000	chr1:010509532	0.0	C/10509532-10509781,10509873-10510021,10510110-10510307,10510441-10510702,10510808-10511745,10512243-10512320	AT1G30000.1 CDS  gene_syn T1P2.10, T1P2_10  go_function mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|GO:0004571||IEA  go_function calcium ion binding|GO:0005509||IEA  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process protein amino acid N-linked glycosylation|GO:0006487||ISS  go_function alpha-mannosidase activity|GO:0004559||ISS  product glycoside hydrolase family 47 protein  note glycoside hydrolase family 47 protein; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana protein match is: mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (TAIR:AT1G51590.1); Has 1507 Blast hits to 1364 proteins in 137 species: Archae - 0; Bacteria - 8; Metazoa - 700; Fungi - 557; Plants - 86; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).  protein_id AT1G30000.1p  transcript_id AT1G30000.1  protein_id AT1G30000.1p  transcript_id AT1G30000.1  
At1g30010	chr1:010513194	0.0	W/10513194-10515329	AT1G30010.1 CDS  gene_syn T1P2.4, T1P2_4  go_process RNA-dependent DNA replication|GO:0006278||IEA  go_process RNA splicing|GO:0008380||IEA  go_function RNA binding|GO:0003723||IEA  go_function RNA-directed DNA polymerase activity|GO:0003964||IEA  go_process RNA-dependent DNA replication|GO:0006278||ISS  go_process RNA splicing|GO:0008380||ISS  go_function RNA binding|GO:0003723||ISS  go_function RNA-directed DNA polymerase activity|GO:0003964||ISS  product intron maturase, type II family protein  note intron maturase, type II family protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: intron maturase, type II family protein (TAIR:AT5G46920.1); Has 2543 Blast hits to 2478 proteins in 473 species: Archae - 11; Bacteria - 2127; Metazoa - 5; Fungi - 45; Plants - 195; Viruses - 2; Other Eukaryotes - 158 (source: NCBI BLink).  protein_id AT1G30010.1p  transcript_id AT1G30010.1  protein_id AT1G30010.1p  transcript_id AT1G30010.1  
At1g30020	chr1:010515874	0.0	C/10515874-10516347	AT1G30020.1 CDS  gene_syn T1P2.11, T1P2_11  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46230.1); Has 160 Blast hits to 158 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30020.1p  transcript_id AT1G30020.1  protein_id AT1G30020.1p  transcript_id AT1G30020.1  
At1g30016	chr1:010521120	0.0	C/10521120-10521215	AT1G30016.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G30016.1p  transcript_id AT1G30016.1  protein_id AT1G30016.1p  transcript_id AT1G30016.1  
At1g30030	chr1:010531831	0.0	W/10531831-10534842	AT1G30030.1 mRNA_TE_gene  pseudo  gene_syn T1P2.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.5e-30 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)  
At1g30040	chr1:010537769	0.0	W/10537769-10538181,10538388-10538730,10539301-10539570	AT1G30040.1 CDS  gene_syn ATGA2OX2, GIBBERELLIN 2-OXIDASE, T1P2.6, T1P2_6  gene ATGA2OX2  function Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process response to red light|GO:0010114|17449805|IEP  go_process gibberellin catabolic process|GO:0045487|10200325|IDA  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|10200325|IDA  product ATGA2OX2 (GIBBERELLIN 2-OXIDASE); gibberellin 2-beta-dioxygenase  note GIBBERELLIN 2-OXIDASE (ATGA2OX2); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; INVOLVED IN: response to red or far red light, response to red light, gibberellin catabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ATGA2OX3 (gibberellin 2-oxidase 3); gibberellin 2-beta-dioxygenase (TAIR:AT2G34555.1); Has 5858 Blast hits to 5836 proteins in 673 species: Archae - 0; Bacteria - 720; Metazoa - 88; Fungi - 656; Plants - 3065; Viruses - 0; Other Eukaryotes - 1329 (source: NCBI BLink).  protein_id AT1G30040.1p  transcript_id AT1G30040.1  protein_id AT1G30040.1p  transcript_id AT1G30040.1  
At1g30040	chr1:010537769	0.0	W/10537769-10538181,10538388-10538781	AT1G30040.2 CDS  gene_syn ATGA2OX2, GIBBERELLIN 2-OXIDASE, T1P2.6, T1P2_6  gene ATGA2OX2  function Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.  go_process response to red or far red light|GO:0009639|17010113|IEP  go_process response to red light|GO:0010114|17449805|IEP  go_process gibberellin catabolic process|GO:0045487|10200325|IDA  go_function gibberellin 2-beta-dioxygenase activity|GO:0045543|10200325|IDA  product ATGA2OX2 (GIBBERELLIN 2-OXIDASE); gibberellin 2-beta-dioxygenase  note GIBBERELLIN 2-OXIDASE (ATGA2OX2); FUNCTIONS IN: gibberellin 2-beta-dioxygenase activity; INVOLVED IN: response to red or far red light, response to red light, gibberellin catabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: ATGA2OX3 (gibberellin 2-oxidase 3); gibberellin 2-beta-dioxygenase (TAIR:AT2G34555.1); Has 4904 Blast hits to 4889 proteins in 631 species: Archae - 0; Bacteria - 659; Metazoa - 74; Fungi - 396; Plants - 2863; Viruses - 0; Other Eukaryotes - 912 (source: NCBI BLink).  protein_id AT1G30040.2p  transcript_id AT1G30040.2  protein_id AT1G30040.2p  transcript_id AT1G30040.2  
At1g30050	chr1:010543177	0.0	W/10543177-10543362,10543435-10544418	AT1G30050.1 CDS  gene_syn T1P2.7, T1P2_7  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 168 Blast hits to 166 proteins in 45 species: Archae - 0; Bacteria - 4; Metazoa - 70; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).  protein_id AT1G30050.1p  transcript_id AT1G30050.1  protein_id AT1G30050.1p  transcript_id AT1G30050.1  
At1g30060	chr1:010545087	0.0	C/10545087-10545256,10545368-10545557,10545638-10545705,10545804-10545906	AT1G30060.1 CDS  gene_syn T1P2.17, T1P2_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product COP1-interacting protein-related  note COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SGS (InterPro:IPR007699); BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT2G01800.3); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30060.1p  transcript_id AT1G30060.1  protein_id AT1G30060.1p  transcript_id AT1G30060.1  
At1g30070	chr1:010546794	0.0	C/10546794-10546895,10546991-10547050,10547141-10547380,10547495-10547650,10547962-10548072	AT1G30070.1 CDS  gene_syn T1P2.12, T1P2_12  go_component plasma membrane|GO:0005886|17644812|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SGS domain-containing protein  note SGS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CS domain (InterPro:IPR007052), SGS (InterPro:IPR007699), HSP20-like chaperone (InterPro:IPR008978), CS (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G30060.1); Has 228 Blast hits to 227 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 14; Plants - 46; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).  protein_id AT1G30070.1p  transcript_id AT1G30070.1  protein_id AT1G30070.1p  transcript_id AT1G30070.1  
At1g30080	chr1:010551231	0.0	C/10551231-10551317,10551740-10552463,10552636-10552978,10553095-10553167	AT1G30080.1 CDS  gene_syn T1P2.13, T1P2_13  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function catalytic activity|GO:0003824||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function cation binding|GO:0043169||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||ISS  product glycosyl hydrolase family 17 protein  note glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 17 protein (TAIR:AT4G18340.1); Has 1394 Blast hits to 1382 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 1378; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G30080.1p  transcript_id AT1G30080.1  protein_id AT1G30080.1p  transcript_id AT1G30080.1  
At1g30090	chr1:010559746	0.0	C/10559746-10560942	AT1G30090.1 CDS  gene_syn T2H7.11, T2H7_11  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product kelch repeat-containing F-box family protein  note kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: AFR (ATTENUATED FAR-RED RESPONSE) (TAIR:AT2G24540.1); Has 5225 Blast hits to 3208 proteins in 143 species: Archae - 14; Bacteria - 216; Metazoa - 4256; Fungi - 0; Plants - 542; Viruses - 9; Other Eukaryotes - 188 (source: NCBI BLink).  protein_id AT1G30090.1p  transcript_id AT1G30090.1  protein_id AT1G30090.1p  transcript_id AT1G30090.1  
At1g30100	chr1:010571383	0.0	W/10571383-10573152	AT1G30100.1 CDS  gene_syn ATNCED5, NCED5, NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5, T2H7.10, T2H7_10  gene NCED5  function Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.  go_component thylakoid|GO:0009579|12834401|IDA  go_process abscisic acid biosynthetic process|GO:0009688|12834401|TAS  go_function 9-cis-epoxycarotenoid dioxygenase activity|GO:0045549|12834401|TAS  product NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5); 9-cis-epoxycarotenoid dioxygenase  note NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5 (NCED5); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: abscisic acid biosynthetic process; LOCATED IN: thylakoid; EXPRESSED IN: leaf whorl, sepal, flower, stamen, seed; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2); 9-cis-epoxycarotenoid dioxygenase (TAIR:AT4G18350.1); Has 2137 Blast hits to 2117 proteins in 355 species: Archae - 10; Bacteria - 525; Metazoa - 208; Fungi - 116; Plants - 570; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink).  protein_id AT1G30100.1p  transcript_id AT1G30100.1  protein_id AT1G30100.1p  transcript_id AT1G30100.1  
At1g30110	chr1:010582700	0.0	W/10582700-10582765,10582870-10582920,10583246-10583338,10583426-10583520,10583599-10583821	AT1G30110.1 CDS  gene_syn ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25, ATNUDX25, T2H7.9, T2H7_9  gene ATNUDX25  go_component cellular_component|GO:0005575||ND  go_process diadenosine tetraphosphate catabolic process|GO:0015967|18345354|IDA  go_function bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) activity|GO:0004081|18345354|IDA  go_function bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) activity|GO:0004081||ISS  product ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25); bis(5 -nucleosyl)-tetraphosphatase (asymmetrical)  note ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25 (ATNUDX25); FUNCTIONS IN: bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) activity; INVOLVED IN: diadenosine tetraphosphate catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX (InterPro:IPR015797), NUDIX hydrolase, core (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26); bis(5 -adenosyl)-pentaphosphatase/ bis(5 -nucleosyl)-tetraphosphatase (asymmetrical) (TAIR:AT3G10620.1); Has 4194 Blast hits to 4194 proteins in 805 species: Archae - 14; Bacteria - 2251; Metazoa - 23; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 1859 (source: NCBI BLink).  protein_id AT1G30110.1p  transcript_id AT1G30110.1  protein_id AT1G30110.1p  transcript_id AT1G30110.1  
At1g30120	chr1:010584350	0.0	C/10584350-10585322,10586030-10586061,10586141-10586247,10586369-10586477	AT1G30120.1 CDS  gene_syn PDH-E1 BETA, PYRUVATE DEHYDROGENASE E1 BETA  gene PDH-E1 BETA  function Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast|GO:0009507|9393637|TAS  go_component plastid pyruvate dehydrogenase complex|GO:0010240|9393637|TAS  go_process fatty acid biosynthetic process|GO:0006633|9393637|TAS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739|9393637|TAS  go_function pyruvate dehydrogenase (acetyl-transferring) activity|GO:0004739||ISS  product PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring)  note PYRUVATE DEHYDROGENASE E1 BETA (PDH-E1 BETA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plastid pyruvate dehydrogenase complex, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase C-terminal-like (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase, central region (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: transketolase family protein (TAIR:AT2G34590.1); Has 9549 Blast hits to 9541 proteins in 1369 species: Archae - 95; Bacteria - 4698; Metazoa - 391; Fungi - 143; Plants - 162; Viruses - 0; Other Eukaryotes - 4060 (source: NCBI BLink).  protein_id AT1G30120.1p  transcript_id AT1G30120.1  protein_id AT1G30120.1p  transcript_id AT1G30120.1  
At1g30130	chr1:010587666	0.0	W/10587666-10587964,10588280-10588391,10588525-10588617,10588707-10588907,10588992-10589222	AT1G30130.1 CDS  gene_syn T2H7.7, T2H7_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775); Has 1416 Blast hits to 1416 proteins in 265 species: Archae - 0; Bacteria - 477; Metazoa - 0; Fungi - 4; Plants - 20; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).  protein_id AT1G30130.1p  transcript_id AT1G30130.1  protein_id AT1G30130.1p  transcript_id AT1G30130.1  
At1g30130	chr1:010587666	0.0	W/10587666-10587964,10588280-10588391,10588525-10588617,10588707-10588907,10588992-10589222	AT1G30130.2 CDS  gene_syn T2H7.7, T2H7_7  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775); Has 1416 Blast hits to 1416 proteins in 265 species: Archae - 0; Bacteria - 477; Metazoa - 0; Fungi - 4; Plants - 20; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).  protein_id AT1G30130.2p  transcript_id AT1G30130.2  protein_id AT1G30130.2p  transcript_id AT1G30130.2  
At1g30135	chr1:010596516	0.0	W/10596516-10596595,10596696-10596807,10596892-10597095	AT1G30135.1 CDS  gene_syn JASMONATE-ZIM-DOMAIN PROTEIN 8, JAZ8, TIFY5A  gene JAZ8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8)  note JASMONATE-ZIM-DOMAIN PROTEIN 8 (JAZ8); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7) (TAIR:AT2G34600.1); Has 60 Blast hits to 60 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30135.1p  transcript_id AT1G30135.1  protein_id AT1G30135.1p  transcript_id AT1G30135.1  
At1g30140	chr1:010598764	0.0	W/10598764-10599096,10599192-10599527	AT1G30140.1 CDS  gene_syn T2H7.6, T2H7_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 169 Blast hits to 146 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30140.1p  transcript_id AT1G30140.1  protein_id AT1G30140.1p  transcript_id AT1G30140.1  
At1g30150	chr1:010602178	0.0	W/10602178-10605159	AT1G30150.1 mRNA_TE_gene  pseudo  gene_syn T2H7.5, T2H7_5  note Transposable element gene, CACTA-like transposase family (Tnp1/En/Spm), has a 2.2e-24 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)  
At1g30160	chr1:010606274	0.0	W/10606274-10606306,10606480-10607216,10607305-10607635	AT1G30160.2 CDS  gene_syn T2H7.4, T2H7_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05540.1); Has 115 Blast hits to 112 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30160.2p  transcript_id AT1G30160.2  protein_id AT1G30160.2p  transcript_id AT1G30160.2  
At1g30160	chr1:010606612	0.0	W/10606612-10607216,10607305-10607635	AT1G30160.1 CDS  gene_syn T2H7.4, T2H7_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05540.1); Has 115 Blast hits to 112 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30160.1p  transcript_id AT1G30160.1  protein_id AT1G30160.1p  transcript_id AT1G30160.1  
At1g30170	chr1:010608068	0.0	C/10608068-10608395,10608480-10609219,10609497-10609529	AT1G30170.1 CDS  gene_syn T2H7.3, T2H7_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30160.2); Has 139 Blast hits to 136 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30170.1p  transcript_id AT1G30170.1  protein_id AT1G30170.1p  transcript_id AT1G30170.1  
At1g30180	chr1:010610685	0.0	W/10610685-10614013	AT1G30180.1 mRNA_TE_gene  pseudo  note Transposable element gene, copia-like retrotransposon family, has a 9.5e-115 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g30190	chr1:010618966	0.0	W/10618966-10619802	AT1G30190.1 CDS  gene_syn T2H7.2, T2H7_2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34610.1); Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).  protein_id AT1G30190.1p  transcript_id AT1G30190.1  protein_id AT1G30190.1p  transcript_id AT1G30190.1  
At1g30200	chr1:010625147	0.0	W/10625147-10626286	AT1G30200.1 CDS  gene_syn F12P21.1, F12P21_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G46170.1); Has 84 Blast hits to 83 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30200.1p  transcript_id AT1G30200.1  protein_id AT1G30200.1p  transcript_id AT1G30200.1  
At1g30200	chr1:010625147	0.0	W/10625147-10626286	AT1G30200.2 CDS  gene_syn F12P21.1, F12P21_1  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G46170.1); Has 84 Blast hits to 83 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30200.2p  transcript_id AT1G30200.2  protein_id AT1G30200.2p  transcript_id AT1G30200.2  
At1g30210	chr1:010628754	0.0	C/10628754-10629728	AT1G30210.1 CDS  gene_syn ATTCP24, F12P21.11, F12P21_11, TCP24, TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24  gene TCP24  function TCP family protein involved in heterochronic regulation of leaf differentiation.  go_component cellular_component|GO:0005575||ND  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_process leaf development|GO:0048366|16169896|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor  note TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24 (TCP24); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, leaf development, leaf morphogenesis, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT4G18390.2); Has 2169 Blast hits to 1327 proteins in 305 species: Archae - 0; Bacteria - 5; Metazoa - 389; Fungi - 14; Plants - 1216; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).  protein_id AT1G30210.1p  transcript_id AT1G30210.1  protein_id AT1G30210.1p  transcript_id AT1G30210.1  
At1g30210	chr1:010628754	0.0	C/10628754-10629728	AT1G30210.2 CDS  gene_syn ATTCP24, F12P21.11, F12P21_11, TCP24, TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24  gene TCP24  function TCP family protein involved in heterochronic regulation of leaf differentiation.  go_component cellular_component|GO:0005575||ND  go_process leaf morphogenesis|GO:0009965|18805992|IGI  go_process cell differentiation|GO:0030154|18805992|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process positive regulation of development, heterochronic|GO:0045962|18805992|IGI  go_process leaf development|GO:0048366|16169896|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor  note TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24 (TCP24); FUNCTIONS IN: transcription factor activity; INVOLVED IN: cell differentiation, positive regulation of development, heterochronic, leaf development, leaf morphogenesis, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), CYC/TB1, R domain (InterPro:IPR017888), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor, putative (TAIR:AT4G18390.2); Has 2169 Blast hits to 1327 proteins in 305 species: Archae - 0; Bacteria - 5; Metazoa - 389; Fungi - 14; Plants - 1216; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink).  protein_id AT1G30210.2p  transcript_id AT1G30210.2  protein_id AT1G30210.2p  transcript_id AT1G30210.2  
At1g30220	chr1:010632957	0.0	C/10632957-10633442,10633513-10634115,10634188-10634295,10634382-10634717,10635141-10635211,10635301-10635439	AT1G30220.1 CDS  gene_syn ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, ATINT2, F12P21.2, F12P21_2, INOSITOL TRANSPORTER 2, INT2  gene INT2  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_process transmembrane transport|GO:0055085||IEA  go_component membrane|GO:0016020||ISS  go_function sugar:hydrogen symporter activity|GO:0005351||ISS  go_function carbohydrate transmembrane transporter activity|GO:0015144||ISS  product INT2 (INOSITOL TRANSPORTER 2); carbohydrate transmembrane transporter/ sugar:hydrogen symporter  note INOSITOL TRANSPORTER 2 (INT2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: INT4 (INOSITOL TRANSPORTER 4); carbohydrate transmembrane transporter/ myo-inositol:hydrogen symporter/ sugar:hydrogen symporter (TAIR:AT4G16480.1); Has 32781 Blast hits to 26138 proteins in 1411 species: Archae - 356; Bacteria - 14031; Metazoa - 6350; Fungi - 7762; Plants - 2596; Viruses - 2; Other Eukaryotes - 1684 (source: NCBI BLink).  protein_id AT1G30220.1p  transcript_id AT1G30220.1  protein_id AT1G30220.1p  transcript_id AT1G30220.1  
At1g30230	chr1:010639286	0.0	W/10639286-10639368,10639512-10639628,10639743-10639836,10639925-10640048,10640139-10640414,10640514-10640515	AT1G30230.1 CDS  gene_syn F12P21.12, F12P21_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function translation elongation factor activity|GO:0003746||IEA  go_component eukaryotic translation elongation factor 1 complex|GO:0005853||ISS  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1-beta / EF-1-beta  note elongation factor 1-beta / EF-1-beta; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (InterPro:IPR014038), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: elongation factor 1-beta, putative / EF-1-beta, putative (TAIR:AT2G18110.1); Has 758 Blast hits to 758 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 410; Fungi - 111; Plants - 109; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G30230.1p  transcript_id AT1G30230.1  protein_id AT1G30230.1p  transcript_id AT1G30230.1  
At1g30230	chr1:010639286	0.0	W/10639286-10639368,10639512-10639628,10639743-10639836,10639925-10640048,10640139-10640418,10640517-10640601	AT1G30230.2 CDS  gene_syn F12P21.12, F12P21_12  go_component plasma membrane|GO:0005886|17317660|IDA  go_function translation elongation factor activity|GO:0003746||IEA  go_component eukaryotic translation elongation factor 1 complex|GO:0005853||ISS  go_process translational elongation|GO:0006414||ISS  go_function translation elongation factor activity|GO:0003746||ISS  product elongation factor 1-beta / EF-1-beta  note elongation factor 1-beta / EF-1-beta; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (InterPro:IPR014038), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: elongation factor 1-beta, putative / EF-1-beta, putative (TAIR:AT2G18110.1); Has 758 Blast hits to 758 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 410; Fungi - 111; Plants - 109; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).  protein_id AT1G30230.2p  transcript_id AT1G30230.2  protein_id AT1G30230.2p  transcript_id AT1G30230.2  
At1g30240	chr1:010641241	0.0	C/10641241-10641896,10641985-10642228,10642405-10642673,10642748-10642875,10643155-10643339,10643631-10643815,10643898-10644027,10644110-10644169,10644354-10644425,10644759-10644864,10645202-10645266,10645356-10645472,10645572-10645838	AT1G30240.2 CDS  gene_syn F12P21.4, F12P21_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 120 Blast hits to 120 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 41; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G30240.2p  transcript_id AT1G30240.2  protein_id AT1G30240.2p  transcript_id AT1G30240.2  
At1g30240	chr1:010641241	0.0	C/10641241-10641896,10641985-10642228,10642405-10642673,10642754-10642875,10643155-10643339,10643631-10643815,10643898-10644027,10644110-10644169,10644354-10644425,10644759-10644864,10645202-10645266,10645356-10645472,10645572-10645838	AT1G30240.1 CDS  gene_syn F12P21.4, F12P21_4  go_function binding|GO:0005488||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product binding  note binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 116 Blast hits to 116 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 41; Plants - 27; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G30240.1p  transcript_id AT1G30240.1  protein_id AT1G30240.1p  transcript_id AT1G30240.1  
At1g30250	chr1:010647253	0.0	C/10647253-10647501	AT1G30250.1 CDS  gene_syn F12P21.5, F12P21_5  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30250.1p  transcript_id AT1G30250.1  protein_id AT1G30250.1p  transcript_id AT1G30250.1  
At1g30260	chr1:010651159	0.0	W/10651159-10651452	AT1G30260.1 CDS  gene_syn AGAMOUS-LIKE 79, AGL79, F12P21.9, F12P21_9  go_process response to cytokinin stimulus|GO:0009735|16212609|IEP  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cytokinin stimulus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT4G21060.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30260.1p  transcript_id AT1G30260.1  protein_id AT1G30260.1p  transcript_id AT1G30260.1  
At1g30270	chr1:010655270	0.0	W/10655270-10655494,10655586-10655648,10655946-10656017,10656104-10656211,10656320-10656400,10656540-10656593,10656691-10656816,10656993-10657082,10657202-10657321,10657401-10657526,10657741-10657857,10657954-10658010,10658091-10658165,10658284-10658365,10658472-10658524	AT1G30270.1 CDS  gene_syn ATCIPK23, CBL-INTERACTING PROTEIN KINASE 23, CIPK23, F12P21.6, F12P21_6, LKS1, LOW-K+-SENSITIVE 1, SNF1-RELATED PROTEIN KINASE 3.23, SnRK3.23  gene CIPK23  function Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylates AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9.  go_component nucleus|GO:0005634|15610358|IDA  go_component nucleus|GO:0005634|17922773|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component cytosol|GO:0005829|17922773|IDA  go_component plasma membrane|GO:0005886|17922773|IPI  go_process response to nutrient|GO:0007584|17922773|IMP  go_process response to water deprivation|GO:0009414|17922773|IMP  go_process potassium ion import|GO:0010107|16814720|IMP  go_process stomatal movement|GO:0010118|17922773|IMP  go_function protein serine/threonine kinase activity|GO:0004674|16814720|IDA  go_function protein binding|GO:0005515|16814720|IPI  go_function kinase activity|GO:0016301||ISS  product CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase/ protein binding / protein serine/threonine kinase  note CBL-INTERACTING PROTEIN KINASE 23 (CIPK23); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, kinase activity; INVOLVED IN: response to water deprivation, potassium ion import, stomatal movement, response to nutrient; LOCATED IN: cytosol, plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), NAF (InterPro:IPR004041), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (TAIR:AT1G01140.1); Has 96554 Blast hits to 94841 proteins in 3068 species: Archae - 76; Bacteria - 8641; Metazoa - 41672; Fungi - 8845; Plants - 18335; Viruses - 484; Other Eukaryotes - 18501 (source: NCBI BLink).  protein_id AT1G30270.1p  transcript_id AT1G30270.1  protein_id AT1G30270.1p  transcript_id AT1G30270.1  
At1g30280	chr1:010662851	0.0	C/10662851-10662895,10662984-10663163,10663249-10663338,10663424-10663994,10664089-10664570	AT1G30280.1 CDS  gene_syn F12P21.7, F12P21_7  go_function heat shock protein binding|GO:0031072||IEA  go_component cellular_component|GO:0005575||ND  product heat shock protein binding  note heat shock protein binding; FUNCTIONS IN: heat shock protein binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1); heat shock protein binding (TAIR:AT1G75100.1); Has 2605 Blast hits to 1437 proteins in 169 species: Archae - 0; Bacteria - 42; Metazoa - 1533; Fungi - 237; Plants - 165; Viruses - 69; Other Eukaryotes - 559 (source: NCBI BLink).  protein_id AT1G30280.1p  transcript_id AT1G30280.1  protein_id AT1G30280.1p  transcript_id AT1G30280.1  
At1g30282	chr1:010663332	0.0	W/10663332-10664763	AT1G30282.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G30280  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G30282.1  
At1g30290	chr1:010670320	0.0	C/10670320-10672740	AT1G30290.1 CDS  gene_syn F12P21.10, F12P21_10  function unknown protein  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1).  protein_id AT1G30290.1p  transcript_id AT1G30290.1  protein_id AT1G30290.1p  transcript_id AT1G30290.1  
At1g30300	chr1:010673084	0.0	W/10673084-10673277,10673541-10673676,10673867-10673994,10674094-10674241,10674329-10674434,10674521-10674579,10674684-10674719,10674792-10674901,10675004-10675061	AT1G30300.1 CDS  gene_syn F12P21.8, F12P21_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03610.1); Has 1586 Blast hits to 1576 proteins in 327 species: Archae - 19; Bacteria - 528; Metazoa - 0; Fungi - 17; Plants - 57; Viruses - 0; Other Eukaryotes - 965 (source: NCBI BLink).  protein_id AT1G30300.1p  transcript_id AT1G30300.1  protein_id AT1G30300.1p  transcript_id AT1G30300.1  
At1g30310	chr1:010675489	0.0	C/10675489-10675935	AT1G30310.1 mRNA_TE_gene  pseudo  gene_syn F26G16.1  note Transposable element gene, copia-like retrotransposon family, has a 7.6e-19 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g30320	chr1:010680348	0.0	W/10680348-10680377,10680709-10680895,10681236-10681850,10681939-10682344,10682458-10682539,10682643-10682852	AT1G30320.1 CDS  gene_syn T4K22.7, T4K22_7  go_component plasma membrane|GO:0005886|17317660|IDA  go_function DNA binding|GO:0003677||ISS  product remorin family protein  note remorin family protein; FUNCTIONS IN: DNA binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal region (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: remorin family protein (TAIR:AT2G02170.2); Has 11227 Blast hits to 6329 proteins in 787 species: Archae - 19; Bacteria - 2109; Metazoa - 2795; Fungi - 948; Plants - 557; Viruses - 39; Other Eukaryotes - 4760 (source: NCBI BLink).  protein_id AT1G30320.1p  transcript_id AT1G30320.1  protein_id AT1G30320.1p  transcript_id AT1G30320.1  
At1g30330	chr1:010686125	0.0	C/10686125-10686341,10686427-10686617,10686699-10687936,10688018-10688165,10688258-10688333,10688414-10688536,10688618-10688782,10688866-10688956,10689046-10689130,10689215-10689370,10689455-10689511,10689605-10689703,10689789-10689901,10689994-10690036	AT1G30330.1 CDS  gene_syn ARF6, AUXIN RESPONSE FACTOR 6, T4K22.6, T4K22_6  gene ARF6  function Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16107481|IMP  go_process flower development|GO:0009908|16107481|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor  note AUXIN RESPONSE FACTOR 6 (ARF6); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor (TAIR:AT5G37020.2); Has 60878 Blast hits to 24471 proteins in 1009 species: Archae - 8; Bacteria - 3128; Metazoa - 21947; Fungi - 6356; Plants - 4892; Viruses - 657; Other Eukaryotes - 23890 (source: NCBI BLink).  protein_id AT1G30330.1p  transcript_id AT1G30330.1  protein_id AT1G30330.1p  transcript_id AT1G30330.1  
At1g30330	chr1:010686125	0.0	C/10686125-10686341,10686427-10686617,10686699-10687936,10688018-10688165,10688258-10688333,10688414-10688536,10688618-10688782,10688866-10688956,10689046-10689130,10689215-10689370,10689455-10689511,10689605-10689703,10689789-10689907,10689994-10690036	AT1G30330.2 CDS  gene_syn ARF6, AUXIN RESPONSE FACTOR 6, T4K22.6, T4K22_6  gene ARF6  function Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process response to auxin stimulus|GO:0009733|16107481|IMP  go_process flower development|GO:0009908|16107481|IGI  go_function transcription factor activity|GO:0003700|11118137|ISS  product ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor  note AUXIN RESPONSE FACTOR 6 (ARF6); FUNCTIONS IN: transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor (TAIR:AT5G37020.2); Has 60979 Blast hits to 24485 proteins in 1010 species: Archae - 8; Bacteria - 3114; Metazoa - 22033; Fungi - 6336; Plants - 4903; Viruses - 658; Other Eukaryotes - 23927 (source: NCBI BLink).  protein_id AT1G30330.2p  transcript_id AT1G30330.2  protein_id AT1G30330.2p  transcript_id AT1G30330.2  
At1g30340	chr1:010696999	0.0	W/10696999-10701393	AT1G30340.1 mRNA_TE_gene  pseudo  gene_syn T4K22.10  note Transposable element gene, copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)  
At1g30350	chr1:010710194	0.0	C/10710194-10710412,10710590-10710728,10710831-10710934,10711020-10711664	AT1G30350.1 CDS  gene_syn T4K22.5, T4K22_5  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function lyase activity|GO:0016829||ISS  go_function pectate lyase activity|GO:0030570||ISS  product pectate lyase family protein  note pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, petal, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectate lyase family protein (TAIR:AT1G11920.1); Has 967 Blast hits to 962 proteins in 167 species: Archae - 0; Bacteria - 429; Metazoa - 0; Fungi - 135; Plants - 393; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G30350.1p  transcript_id AT1G30350.1  protein_id AT1G30350.1p  transcript_id AT1G30350.1  
At1g30360	chr1:010715892	0.0	W/10715892-10716162,10716534-10716691,10716786-10717061,10717159-10717988,10718072-10718327,10718416-10718799	AT1G30360.1 CDS  gene_syn ERD4, T4K22.4, T4K22_4, early-responsive to dehydration 4  gene ERD4  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process response to water deprivation|GO:0009414|8075396|IEP  product ERD4 (early-responsive to dehydration 4)  note early-responsive to dehydration 4 (ERD4); INVOLVED IN: response to water deprivation; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT1G32090.1); Has 875 Blast hits to 823 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 414; Plants - 234; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G30360.1p  transcript_id AT1G30360.1  protein_id AT1G30360.1p  transcript_id AT1G30360.1  
At1g30370	chr1:010719169	0.0	C/10719169-10720758	AT1G30370.1 CDS  gene_syn T4K22.3, T4K22_3  go_process lipid metabolic process|GO:0006629||IEA  go_function triacylglycerol lipase activity|GO:0004806||IEA  go_process lipid metabolic process|GO:0006629||ISS  go_function triacylglycerol lipase activity|GO:0004806||ISS  product lipase class 3 family protein  note lipase class 3 family protein; FUNCTIONS IN: triacylglycerol lipase activity; INVOLVED IN: lipid metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: lipase class 3 family protein (TAIR:AT1G06800.1); Has 1224 Blast hits to 1220 proteins in 234 species: Archae - 0; Bacteria - 275; Metazoa - 63; Fungi - 247; Plants - 361; Viruses - 8; Other Eukaryotes - 270 (source: NCBI BLink).  protein_id AT1G30370.1p  transcript_id AT1G30370.1  protein_id AT1G30370.1p  transcript_id AT1G30370.1  
At1g30380	chr1:010722325	0.0	W/10722325-10722408,10722628-10722708,10722786-10723013	AT1G30380.1 CDS  gene_syn PSAK, PSI-K, T4K22.2, T4K22_2, photosystem I subunit K  gene PSAK  function Encodes subunit K of photosystem I reaction center.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem I|GO:0009522||ISS  go_component membrane|GO:0016020||ISS  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSAK (photosystem I subunit K)  note photosystem I subunit K (PSAK); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, photosystem I, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I PsaG/PsaK protein (InterPro:IPR000549), Photosystem I reaction centre, PsaG/PsaK, plant (InterPro:IPR016370), Photosystem I reaction center, PsaK, plant (InterPro:IPR017493); Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30380.1p  transcript_id AT1G30380.1  protein_id AT1G30380.1p  transcript_id AT1G30380.1  
At1g30390	chr1:010723454	0.0	W/10723454-10725016	AT1G30390.1 mRNA_TE_gene  pseudo  gene_syn T4K22.11, T4K22_11  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.9e-17 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)  
At1g30400	chr1:010728139	0.0	W/10728139-10728468,10728561-10728739,10728836-10728875,10729002-10729158,10729578-10729692,10729775-10729855,10730113-10730137,10730295-10730351,10730571-10730636,10730993-10731067,10731227-10731334,10731721-10731855,10731987-10732093,10732193-10732286,10732617-10732784,10732961-10733101,10733205-10733405,10733572-10733670,10733860-10734012,10734207-10734589,10734856-10735036,10735238-10735561,10735696-10736452,10736558-10736679,10736752-10736997,10737082-10737508,10737600-10737697	AT1G30400.1 CDS  gene_syn ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, ATABCC1, ATMRP1, EST1, GLUTATHIONE S-CONJUGATE TRANSPORTING ATPASE, MRP1, T4K22.12, T4K22_12  gene MRP1  function glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|14760709|IDA  go_component vacuole|GO:0005773|15215502|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function xenobiotic-transporting ATPase activity|GO:0008559|9223346|IMP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase  note ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 (MRP1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, xenobiotic-transporting ATPase activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2); ATPase, coupled to transmembrane movement of substances (TAIR:AT2G34660.1); Has 391321 Blast hits to 207720 proteins in 2563 species: Archae - 7220; Bacteria - 278351; Metazoa - 10740; Fungi - 5071; Plants - 2959; Viruses - 19; Other Eukaryotes - 86961 (source: NCBI BLink).  protein_id AT1G30400.1p  transcript_id AT1G30400.1  protein_id AT1G30400.1p  transcript_id AT1G30400.1  
At1g30400	chr1:010728139	0.0	W/10728139-10728468,10728561-10728739,10728836-10728875,10729002-10729158,10729578-10729692,10729775-10729855,10730113-10730137,10730295-10730351,10730571-10730636,10730993-10731067,10731227-10731334,10731721-10731855,10731987-10732093,10732193-10732286,10732617-10732784,10732961-10733101,10733205-10733405,10733572-10733670,10733860-10734012,10734207-10734589,10734856-10735036,10735238-10735561,10735696-10736452,10736558-10736679,10736752-10736997,10737082-10737508,10737600-10737697	AT1G30400.2 CDS  gene_syn ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, ATABCC1, ATMRP1, EST1, GLUTATHIONE S-CONJUGATE TRANSPORTING ATPASE, MRP1, T4K22.12, T4K22_12  gene MRP1  function glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.  go_component plant-type vacuole|GO:0000325|16618929|IDA  go_component vacuole|GO:0005773|15539469|IDA  go_component plasma membrane|GO:0005886|17151019|IDA  go_component vacuolar membrane|GO:0005774|16618929|IDA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_function xenobiotic-transporting ATPase activity|GO:0008559|9223346|IMP  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase  note ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 (ATMRP1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, xenobiotic-transporting ATPase activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2); ATPase, coupled to transmembrane movement of substances (TAIR:AT2G34660.1); Has 391321 Blast hits to 207720 proteins in 2563 species: Archae - 7220; Bacteria - 278351; Metazoa - 10740; Fungi - 5071; Plants - 2959; Viruses - 19; Other Eukaryotes - 86961 (source: NCBI BLink).  protein_id AT1G30400.2p  transcript_id AT1G30400.2  protein_id AT1G30400.2p  transcript_id AT1G30400.2  
At1g30410	chr1:010739357	0.0	W/10739357-10739498,10739589-10739689,10739823-10740001,10740163-10740202,10740326-10740482,10740648-10740762,10740866-10740946,10741056-10741080,10741237-10741293,10741611-10741676,10741805-10741879,10741971-10742078,10742158-10742292,10742377-10742483,10742589-10742682,10742807-10742974,10743077-10743217,10743333-10743533,10743669-10743767,10743847-10743999,10744177-10744550,10744721-10744901,10744981-10745304,10745400-10746156,10746242-10746363,10746506-10746751,10746868-10747017	AT1G30410.1 CDS  gene_syn ATMRP13, T4K22.13, T4K22_13  gene ATMRP13  function member of MRP subfamily  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP13; ATPase, coupled to transmembrane movement of substances  note ATMRP13; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP12; ATPase, coupled to transmembrane movement of substances (TAIR:AT1G30420.1); Has 356920 Blast hits to 201842 proteins in 2582 species: Archae - 6606; Bacteria - 254207; Metazoa - 10708; Fungi - 4812; Plants - 2967; Viruses - 12; Other Eukaryotes - 77608 (source: NCBI BLink).  protein_id AT1G30410.1p  transcript_id AT1G30410.1  protein_id AT1G30410.1p  transcript_id AT1G30410.1  
At1g30420	chr1:010748816	0.0	W/10748816-10749148,10749269-10749447,10749598-10749637,10749741-10749897,10750020-10750134,10750253-10750333,10750440-10750464,10750661-10750717,10750919-10750984,10751171-10751245,10751337-10751444,10751552-10751686,10751792-10751898,10752002-10752095,10752226-10752393,10752499-10752639,10752750-10752950,10753079-10753177,10753252-10753404,10753542-10753915,10754102-10754282,10754361-10754684,10754778-10755534,10755604-10755725,10755819-10756064,10756167-10756316	AT1G30420.1 CDS  gene_syn ATMRP12, T4K22.1, T4K22_1  gene ATMRP12  function member of MRP subfamily  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626|11346655|ISS  product ATMRP12; ATPase, coupled to transmembrane movement of substances  note ATMRP12; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane region, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane region (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATMRP13; ATPase, coupled to transmembrane movement of substances (TAIR:AT1G30410.1); Has 381012 Blast hits to 206564 proteins in 2586 species: Archae - 7076; Bacteria - 269667; Metazoa - 11239; Fungi - 5118; Plants - 3231; Viruses - 10; Other Eukaryotes - 84671 (source: NCBI BLink).  protein_id AT1G30420.1p  transcript_id AT1G30420.1  protein_id AT1G30420.1p  transcript_id AT1G30420.1  
At1g30430	chr1:010756722	0.0	W/10756722-10756794	AT1G30430.1 tRNA  gene_syn 51682.TRNA-GLU-1, 60744.TRNA-GLU-1, AT1G30435  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Glu (anticodon: CTC)  transcript_id AT1G30430.1  
At1g30440	chr1:010759475	0.0	W/10759475-10759533,10759725-10759794,10760240-10761481,10761573-10762199	AT1G30440.1 CDS  gene_syn F26G16.2, F26G16_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process response to light stimulus|GO:0009416||IEA  go_function signal transducer activity|GO:0004871||IEA  go_function protein binding|GO:0005515||IEA  go_process response to light stimulus|GO:0009416||ISS  go_function signal transducer activity|GO:0004871||ISS  product phototropic-responsive NPH3 family protein  note phototropic-responsive NPH3 family protein; FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: phototropic-responsive NPH3 family protein (TAIR:AT5G03250.1); Has 439 Blast hits to 428 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 436; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30440.1p  transcript_id AT1G30440.1  protein_id AT1G30440.1p  transcript_id AT1G30440.1  
At1g30450	chr1:010762905	0.0	W/10762905-10763065,10763507-10763644,10764072-10764150,10764792-10764883,10764962-10765076,10765273-10765373,10765524-10765585,10765964-10766191,10766289-10766403,10766535-10766729,10767077-10767477,10767656-10767817,10767983-10769061	AT1G30450.1 CDS  gene_syn ATCCC1, CATION-CHLORIDE CO-TRANSPORTER 1, CCC1, F26G16.4, F26G16_4, HAP5, HAPLESS 5  gene CCC1  function member of Cation-chloride co-transporter family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process chloride transport|GO:0006821||IEA  go_process cation transport|GO:0006812||ISS  go_function sodium:potassium:chloride symporter activity|GO:0008511|17355435|IDA  go_function cation:chloride symporter activity|GO:0015377||ISS  product CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1); cation:chloride symporter/ sodium:potassium:chloride symporter  note CATION-CHLORIDE CO-TRANSPORTER 1 (CCC1); FUNCTIONS IN: sodium:potassium:chloride symporter activity, cation:chloride symporter activity; INVOLVED IN: transport, chloride transport, cation transport, sodium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: root vascular system, root tip, cultured cell; CONTAINS InterPro DOMAIN/s: Amino acid permease-associated region (InterPro:IPR004841), Na/K/Cl co-transporter superfamily (InterPro:IPR004842); Has 2712 Blast hits to 2398 proteins in 465 species: Archae - 62; Bacteria - 914; Metazoa - 1320; Fungi - 105; Plants - 75; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G30450.1p  transcript_id AT1G30450.1  protein_id AT1G30450.1p  transcript_id AT1G30450.1  
At1g30450	chr1:010762905	0.0	W/10762905-10763065,10763507-10763644,10764072-10764150,10764792-10764883,10764962-10765076,10765273-10765373,10765524-10765585,10765964-10766191,10766289-10766403,10766535-10766729,10767077-10767477,10767656-10767817,10767983-10769061	AT1G30450.2 CDS  gene_syn ATCCC1, CATION-CHLORIDE CO-TRANSPORTER 1, CCC1, F26G16.4, F26G16_4, HAP5, HAPLESS 5  gene CCC1  function member of Cation-chloride co-transporter family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process chloride transport|GO:0006821||IEA  go_process cation transport|GO:0006812||ISS  go_function sodium:potassium:chloride symporter activity|GO:0008511|17355435|IDA  go_function cation:chloride symporter activity|GO:0015377||ISS  product CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1); cation:chloride symporter/ sodium:potassium:chloride symporter  note CATION-CHLORIDE CO-TRANSPORTER 1 (CCC1); FUNCTIONS IN: sodium:potassium:chloride symporter activity, cation:chloride symporter activity; INVOLVED IN: transport, chloride transport, cation transport, sodium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: root vascular system, root tip, cultured cell; CONTAINS InterPro DOMAIN/s: Amino acid permease-associated region (InterPro:IPR004841), Na/K/Cl co-transporter superfamily (InterPro:IPR004842); Has 2712 Blast hits to 2398 proteins in 465 species: Archae - 62; Bacteria - 914; Metazoa - 1320; Fungi - 105; Plants - 75; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G30450.2p  transcript_id AT1G30450.2  protein_id AT1G30450.2p  transcript_id AT1G30450.2  
At1g30450	chr1:010762905	0.0	W/10762905-10763065,10763507-10763644,10764072-10764150,10764792-10764883,10764962-10765076,10765273-10765373,10765524-10765585,10765964-10766191,10766289-10766403,10766535-10766729,10767077-10767477,10767656-10767817,10767983-10769061	AT1G30450.3 CDS  gene_syn ATCCC1, CATION-CHLORIDE CO-TRANSPORTER 1, CCC1, F26G16.4, F26G16_4, HAP5, HAPLESS 5  gene CCC1  function member of Cation-chloride co-transporter family  go_component plasma membrane|GO:0005886|17317660|IDA  go_process transport|GO:0006810||IEA  go_process sodium ion transport|GO:0006814||IEA  go_process chloride transport|GO:0006821||IEA  go_process cation transport|GO:0006812||ISS  go_function sodium:potassium:chloride symporter activity|GO:0008511|17355435|IDA  go_function cation:chloride symporter activity|GO:0015377||ISS  product CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1); cation:chloride symporter/ sodium:potassium:chloride symporter  note CATION-CHLORIDE CO-TRANSPORTER 1 (CCC1); FUNCTIONS IN: sodium:potassium:chloride symporter activity, cation:chloride symporter activity; INVOLVED IN: transport, chloride transport, cation transport, sodium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: root vascular system, root tip, cultured cell; CONTAINS InterPro DOMAIN/s: Amino acid permease-associated region (InterPro:IPR004841), Na/K/Cl co-transporter superfamily (InterPro:IPR004842); Has 2712 Blast hits to 2398 proteins in 465 species: Archae - 62; Bacteria - 914; Metazoa - 1320; Fungi - 105; Plants - 75; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G30450.3p  transcript_id AT1G30450.3  protein_id AT1G30450.3p  transcript_id AT1G30450.3  
At1g30455	chr1:010769722	0.0	W/10769722-10769941,10770231-10770775	AT1G30455.1 CDS  go_component nucleus|GO:0005634||IEA  go_component transcription factor complex|GO:0005667||IEA  go_process transcription initiation|GO:0006352||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process translational initiation|GO:0006413||IEA  go_process positive regulation of transcription|GO:0045941||IEA  go_function translation initiation factor activity|GO:0003743||IEA  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_function transcription activator activity|GO:0016563||IEA  go_function transcription regulator activity|GO:0030528||IEA  product protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding  note protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding; FUNCTIONS IN: protein binding, transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: transcription factor complex, nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding (TAIR:AT2G45100.1); Has 364 Blast hits to 336 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 91; Plants - 40; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).  protein_id AT1G30455.1p  transcript_id AT1G30455.1  protein_id AT1G30455.1p  transcript_id AT1G30455.1  
At1g30460	chr1:010771469	0.0	C/10771469-10772221,10772415-10772501,10772819-10772887,10773079-10773189,10773353-10773515,10774486-10774833,10774959-10775323	AT1G30460.1 CDS  gene_syn ATCPSF30, CPSF30, F26G16.6, F26G16_6  gene CPSF30  function Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.  go_component nucleus|GO:0005634|16500995|IDA  go_component mRNA cleavage and polyadenylation specificity factor complex|GO:0005847|16500995|ISS  go_process RNA processing|GO:0006396|16500995|TAS  go_process RNA processing|GO:0006396|17576667|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723|16500995|IDA  go_function endonuclease activity|GO:0004519|17576667|IDA  go_function protein binding|GO:0005515|16897494|IPI  go_function calmodulin binding|GO:0005516|16500995|IDA  product CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding  note CPSF30; FUNCTIONS IN: protein binding, RNA binding, calmodulin binding, nucleic acid binding, endonuclease activity; INVOLVED IN: RNA processing; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex, nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: YT521-B-like family protein (TAIR:AT4G11970.2); Has 10997 Blast hits to 7228 proteins in 434 species: Archae - 4; Bacteria - 558; Metazoa - 7699; Fungi - 921; Plants - 539; Viruses - 118; Other Eukaryotes - 1158 (source: NCBI BLink).  protein_id AT1G30460.1p  transcript_id AT1G30460.1  protein_id AT1G30460.1p  transcript_id AT1G30460.1  
At1g30460	chr1:010774446	0.0	C/10774446-10774833,10774959-10775323	AT1G30460.2 CDS  gene_syn ATCPSF30, CPSF30, F26G16.6, F26G16_6  gene CPSF30  function Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion.  go_component nucleus|GO:0005634|16500995|IDA  go_component mRNA cleavage and polyadenylation specificity factor complex|GO:0005847|16500995|ISS  go_process RNA processing|GO:0006396|16500995|TAS  go_process RNA processing|GO:0006396|17576667|IDA  go_function nucleic acid binding|GO:0003676||ISS  go_function RNA binding|GO:0003723|16500995|IDA  go_function endonuclease activity|GO:0004519|17576667|IDA  go_function protein binding|GO:0005515|16897494|IPI  go_function calmodulin binding|GO:0005516|16500995|IDA  product CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding  note CPSF30; FUNCTIONS IN: protein binding, RNA binding, calmodulin binding, nucleic acid binding, endonuclease activity; INVOLVED IN: RNA processing; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex, nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT1G21570.1); Has 1169 Blast hits to 1115 proteins in 172 species: Archae - 0; Bacteria - 2; Metazoa - 485; Fungi - 243; Plants - 83; Viruses - 10; Other Eukaryotes - 346 (source: NCBI BLink).  protein_id AT1G30460.2p  transcript_id AT1G30460.2  protein_id AT1G30460.2p  transcript_id AT1G30460.2  
At1g30470	chr1:010779423	0.0	W/10779423-10779461,10780167-10780270,10780688-10780774,10780899-10780974,10781071-10781145,10781263-10781316,10781694-10781753,10782075-10782191,10782335-10782429,10782535-10782734,10783110-10783207,10783341-10783444,10783521-10783689,10783764-10783892,10784203-10784285,10784617-10784758,10785297-10785326,10785530-10785600,10785713-10786415	AT1G30470.1 CDS  gene_syn F26G16.8, F26G16_8  go_component plasma membrane|GO:0005886|17151019|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SIT4 phosphatase-associated family protein  note SIT4 phosphatase-associated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1); Has 12516 Blast hits to 6210 proteins in 533 species: Archae - 74; Bacteria - 4701; Metazoa - 3496; Fungi - 1722; Plants - 304; Viruses - 104; Other Eukaryotes - 2115 (source: NCBI BLink).  protein_id AT1G30470.1p  transcript_id AT1G30470.1  protein_id AT1G30470.1p  transcript_id AT1G30470.1  
At1g30473	chr1:010787215	0.0	W/10787215-10787241,10787329-10787407,10787494-10788107	AT1G30473.1 CDS  go_process metal ion transport|GO:0030001||IEA  go_function metal ion binding|GO:0046872||IEA  product metal ion binding  note metal ion binding; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT4G23882.1); Has 160 Blast hits to 160 proteins in 27 species: Archae - 0; Bacteria - 4; Metazoa - 8; Fungi - 4; Plants - 139; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).  protein_id AT1G30473.1p  transcript_id AT1G30473.1  protein_id AT1G30473.1p  transcript_id AT1G30473.1  
At1g30475	chr1:010788501	0.0	C/10788501-10788682,10788913-10788988,10789232-10789377,10789633-10789717	AT1G30475.2 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 121 Blast hits to 121 proteins in 30 species: Archae - 0; Bacteria - 14; Metazoa - 59; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G30475.2p  transcript_id AT1G30475.2  protein_id AT1G30475.2p  transcript_id AT1G30475.2  
At1g30475	chr1:010788501	0.0	C/10788501-10788682,10788913-10788988,10789232-10789377,10789633-10789717	AT1G30475.3 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 121 Blast hits to 121 proteins in 30 species: Archae - 0; Bacteria - 14; Metazoa - 59; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G30475.3p  transcript_id AT1G30475.3  protein_id AT1G30475.3p  transcript_id AT1G30475.3  
At1g30475	chr1:010788501	0.0	C/10788501-10788682,10788913-10788988,10789232-10789377,10789633-10789719,10789859-10789943	AT1G30475.1 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 127 Blast hits to 127 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 65; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G30475.1p  transcript_id AT1G30475.1  protein_id AT1G30475.1p  transcript_id AT1G30475.1  
At1g30475	chr1:010788821	0.0	C/10788821-10788988,10789232-10789377,10789633-10789717	AT1G30475.4 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: emb1303 (embryo defective 1303) (TAIR:AT1G56200.1); Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30475.4p  transcript_id AT1G30475.4  protein_id AT1G30475.4p  transcript_id AT1G30475.4  
At1g30480	chr1:010790315	0.0	W/10790315-10791184,10792130-10792423	AT1G30480.1 CDS  gene_syn DRT111, F26G16.10, F26G16_10  gene DRT111  function recombination and DNA-damage resistance protein (DRT111)  go_function nucleotide binding|GO:0000166||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_component nucleus|GO:0005634|15610358|IDA  go_component cytoplasm|GO:0005737|15610358|IDA  go_component chloroplast|GO:0009507|8479917|ISS  go_process DNA repair|GO:0006281|8479917|IGI  product DRT111; nucleic acid binding / nucleotide binding  note DRT111; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: DNA repair; LOCATED IN: nucleus, chloroplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Splicing factor, SPF45 (InterPro:IPR016967); Has 6554 Blast hits to 5119 proteins in 344 species: Archae - 14; Bacteria - 274; Metazoa - 3622; Fungi - 868; Plants - 423; Viruses - 37; Other Eukaryotes - 1316 (source: NCBI BLink).  protein_id AT1G30480.1p  transcript_id AT1G30480.1  protein_id AT1G30480.1p  transcript_id AT1G30480.1  
At1g30490	chr1:010796328	0.0	C/10796328-10796474,10796547-10796696,10796780-10796897,10796996-10797285,10797374-10797514,10797601-10797681,10797765-10797953,10798046-10798235,10798308-10798414,10798489-10798563,10798650-10798805,10798884-10798967,10799044-10799157,10799244-10799339,10799435-10799525,10799607-10799722,10799853-10800012,10800524-10800744	AT1G30490.1 CDS  gene_syn ATHB9, F26G16.11, F26G16_11, PHAVOLUTA, PHV  gene PHV  function Dominant PHV mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Has overlapping functions with PHABULOSA, REVOLUTA and CORONA/ATHB15 in patterning the apical portion of the embryo. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain.  go_component nucleus|GO:0005634||IEA  go_component nucleus|GO:0005634||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process determination of bilateral symmetry|GO:0009855|15598805|IMP  go_process embryonic pattern specification|GO:0009880|17376809|IGI  go_process adaxial/abaxial axis specification|GO:0009943|11395776|IMP  go_process polarity specification of adaxial/abaxial axis|GO:0009944|15598805|IMP  go_process meristem initiation|GO:0010014|15598805|IMP  go_process primary shoot apical meristem specification|GO:0010072|15598805|IMP  go_process integument development|GO:0080060|19054366|IGI  go_function DNA binding|GO:0003677|11395776|ISS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein binding|GO:0005515||NAS  product PHV (PHAVOLUTA); DNA binding / protein binding / transcription factor  note PHAVOLUTA (PHV); FUNCTIONS IN: protein binding, transcription factor activity, DNA binding; INVOLVED IN: in 8 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: PHB (PHABULOSA); DNA binding / transcription factor (TAIR:AT2G34710.1); Has 2613 Blast hits to 2543 proteins in 222 species: Archae - 0; Bacteria - 22; Metazoa - 803; Fungi - 79; Plants - 1690; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).  protein_id AT1G30490.1p  transcript_id AT1G30490.1  protein_id AT1G30490.1p  transcript_id AT1G30490.1  
At1g30500	chr1:010804736	0.0	C/10804736-10804909,10804989-10805141,10805233-10805307,10805569-10805699,10805869-10805896	AT1G30500.1 CDS  gene_syn F26G16.12, F26G16_12, NF-YA7, NUCLEAR FACTOR Y, SUBUNIT A7  gene NF-YA7  go_component nucleus|GO:0005634||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process negative regulation of gene-specific transcription|GO:0032582|19207209|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function specific transcriptional repressor activity|GO:0016566|19207209|IDA  product NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7); specific transcriptional repressor/ transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A7 (NF-YA7); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289); BEST Arabidopsis thaliana protein match is: NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4); specific transcriptional repressor/ transcription factor (TAIR:AT2G34720.1); Has 441 Blast hits to 441 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G30500.1p  transcript_id AT1G30500.1  protein_id AT1G30500.1p  transcript_id AT1G30500.1  
At1g30500	chr1:010804736	0.0	C/10804736-10804909,10804989-10805153,10805233-10805307,10805569-10805699,10805869-10805896	AT1G30500.2 CDS  gene_syn F26G16.12, F26G16_12, NF-YA7, NUCLEAR FACTOR Y, SUBUNIT A7  gene NF-YA7  go_component nucleus|GO:0005634||IEA  go_component CCAAT-binding factor complex|GO:0016602||ISS  go_process regulation of transcription, DNA-dependent|GO:0006355||ISS  go_process negative regulation of gene-specific transcription|GO:0032582|19207209|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  go_function specific transcriptional repressor activity|GO:0016566|19207209|IDA  product NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7); specific transcriptional repressor/ transcription factor  note NUCLEAR FACTOR Y, SUBUNIT A7 (NF-YA7); FUNCTIONS IN: transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289); BEST Arabidopsis thaliana protein match is: NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4); specific transcriptional repressor/ transcription factor (TAIR:AT2G34720.1); Has 441 Blast hits to 441 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 88; Plants - 215; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G30500.2p  transcript_id AT1G30500.2  protein_id AT1G30500.2p  transcript_id AT1G30500.2  
At1g30510	chr1:010807150	0.0	C/10807150-10807649,10807742-10807961,10808059-10808292	AT1G30510.3 CDS  gene_syn ATRFNR2, F26G16.13, F26G16_13, FERREDOXIN:NADP(H) OXIDOREDUCTASE, ROOT FNR 2  gene ATRFNR2  function Encodes a root-type ferredoxin:NADP(H) oxidoreductase.  go_component thylakoid membrane|GO:0042651||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ferredoxin-NADP+ reductase activity|GO:0004324||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product ATRFNR2 (ROOT FNR 2); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase  note ROOT FNR 2 (ATRFNR2); FUNCTIONS IN: ferredoxin-NADP+ reductase activity, NADP or NADPH binding, electron carrier activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ATRFNR1 (ROOT FNR 1); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase (TAIR:AT4G05390.1); Has 4574 Blast hits to 4574 proteins in 1034 species: Archae - 6; Bacteria - 2086; Metazoa - 658; Fungi - 507; Plants - 408; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT1G30510.3p  transcript_id AT1G30510.3  protein_id AT1G30510.3p  transcript_id AT1G30510.3  
At1g30510	chr1:010807150	0.0	C/10807150-10807649,10807742-10807961,10808059-10808400,10808573-10808632,10808961-10808984	AT1G30510.1 CDS  gene_syn ATRFNR2, F26G16.13, F26G16_13, FERREDOXIN:NADP(H) OXIDOREDUCTASE, ROOT FNR 2  gene ATRFNR2  function Encodes a root-type ferredoxin:NADP(H) oxidoreductase.  go_component chloroplast|GO:0009507||IEA  go_component thylakoid membrane|GO:0042651||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ferredoxin-NADP+ reductase activity|GO:0004324||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product ATRFNR2 (ROOT FNR 2); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase  note ROOT FNR 2 (ATRFNR2); FUNCTIONS IN: electron carrier activity, NADP or NADPH binding, ferredoxin-NADP+ reductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ATRFNR1 (ROOT FNR 1); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase (TAIR:AT4G05390.1); Has 4575 Blast hits to 4575 proteins in 1035 species: Archae - 6; Bacteria - 2087; Metazoa - 658; Fungi - 507; Plants - 408; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT1G30510.1p  transcript_id AT1G30510.1  protein_id AT1G30510.1p  transcript_id AT1G30510.1  
At1g30510	chr1:010807150	0.0	C/10807150-10807649,10807742-10807961,10808059-10808403,10808573-10808632,10808961-10808984	AT1G30510.2 CDS  gene_syn ATRFNR2, F26G16.13, F26G16_13, FERREDOXIN:NADP(H) OXIDOREDUCTASE, ROOT FNR 2  gene ATRFNR2  function Encodes a root-type ferredoxin:NADP(H) oxidoreductase.  go_component chloroplast|GO:0009507||IEA  go_component thylakoid membrane|GO:0042651||IEA  go_process oxidation reduction|GO:0055114||IEA  go_function ferredoxin-NADP+ reductase activity|GO:0004324||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function NADP or NADPH binding|GO:0050661||IEA  go_function oxidoreductase activity|GO:0016491||ISS  product ATRFNR2 (ROOT FNR 2); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase  note ROOT FNR 2 (ATRFNR2); FUNCTIONS IN: electron carrier activity, ferredoxin-NADP+ reductase activity, NADP or NADPH binding, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ATRFNR1 (ROOT FNR 1); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase (TAIR:AT4G05390.1); Has 4575 Blast hits to 4575 proteins in 1035 species: Archae - 6; Bacteria - 2087; Metazoa - 658; Fungi - 507; Plants - 408; Viruses - 0; Other Eukaryotes - 909 (source: NCBI BLink).  protein_id AT1G30510.2p  transcript_id AT1G30510.2  protein_id AT1G30510.2p  transcript_id AT1G30510.2  
At1g30515	chr1:010809432	0.0	C/10809432-10809866	AT1G30515.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30515.1p  transcript_id AT1G30515.1  protein_id AT1G30515.1p  transcript_id AT1G30515.1  
At1g30520	chr1:010811039	0.0	W/10811039-10811238,10811365-10811437,10811566-10811737,10811819-10811917,10812007-10812104,10812200-10812393,10812464-10812591,10812666-10813051,10813120-10813322,10813417-10813546	AT1G30520.1 CDS  gene_syn AAE14, Acyl-Activating Enzyme 14, F26G16.14, F26G16_14  gene AAE14  function Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.  go_component chloroplast|GO:0009507|18208520|IDA  go_process phylloquinone biosynthetic process|GO:0042372|18208520|IMP  go_function o-succinylbenzoate-CoA ligase activity|GO:0008756|18208520|IGI  go_function AMP binding|GO:0016208||ISS  product AAE14 (Acyl-Activating Enzyme 14); AMP binding / o-succinylbenzoate-CoA ligase  note Acyl-Activating Enzyme 14 (AAE14); FUNCTIONS IN: o-succinylbenzoate-CoA ligase activity, AMP binding; INVOLVED IN: phylloquinone biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase and ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl-activating enzyme 13 (AAE13) (TAIR:AT3G16170.1); Has 47598 Blast hits to 44432 proteins in 2224 species: Archae - 532; Bacteria - 27306; Metazoa - 2826; Fungi - 2344; Plants - 1184; Viruses - 1; Other Eukaryotes - 13405 (source: NCBI BLink).  protein_id AT1G30520.1p  transcript_id AT1G30520.1  protein_id AT1G30520.1p  transcript_id AT1G30520.1  
At1g30530	chr1:010814917	0.0	W/10814917-10815406,10815503-10816374	AT1G30530.1 CDS  gene_syn F26G16.15, F26G16_15, UDP-GLUCOSYL TRANSFERASE 78D1, UGT78D1  gene UGT78D1  function The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetin  go_process flavonol biosynthetic process|GO:0051555|12900416|IDA  go_process flavonol biosynthetic process|GO:0051555|12900416|IMP  go_function UDP-glycosyltransferase activity|GO:0008194|12900416|IDA  go_function UDP-glycosyltransferase activity|GO:0008194||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function quercetin 3-O-glucosyltransferase activity|GO:0080043|15352060|IDA  product UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1); UDP-glycosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups  note UDP-GLUCOSYL TRANSFERASE 78D1 (UGT78D1); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: flavonol biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2); UDP-glycosyltransferase/ anthocyanidin 3-O-glucosyltransferase/ quercetin 3-O-glucosyltransferase/ transferase, transferring glycosyl groups (TAIR:AT5G17050.1); Has 4523 Blast hits to 4507 proteins in 310 species: Archae - 0; Bacteria - 145; Metazoa - 1650; Fungi - 10; Plants - 2619; Viruses - 71; Other Eukaryotes - 28 (source: NCBI BLink).  protein_id AT1G30530.1p  transcript_id AT1G30530.1  protein_id AT1G30530.1p  transcript_id AT1G30530.1  
At1g30540	chr1:010816951	0.0	C/10816951-10817004,10817105-10817235,10817322-10817491,10817673-10817801,10818107-10818298,10818386-10818533,10818941-10819172	AT1G30540.1 CDS  gene_syn F26G16.16, F26G16_16  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function ATPase activity|GO:0016887||ISS  product ATPase, BadF/BadG/BcrA/BcrD-type family  note ATPase, BadF/BadG/BcrA/BcrD-type family; FUNCTIONS IN: ATPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, BadF/BadG/BcrA/BcrD type (InterPro:IPR002731); Has 975 Blast hits to 975 proteins in 386 species: Archae - 31; Bacteria - 696; Metazoa - 107; Fungi - 20; Plants - 23; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).  protein_id AT1G30540.1p  transcript_id AT1G30540.1  protein_id AT1G30540.1p  transcript_id AT1G30540.1  
At1g30550	chr1:010820838	0.0	C/10820838-10820906,10820993-10821116,10821194-10821285,10821387-10821522,10821595-10821829,10821915-10822003,10822743-10822834,10823090-10823208,10823340-10823549,10823632-10823641	AT1G30550.1 CDS  gene_syn F26G16.17, F26G16_17  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: WW domain-containing protein (TAIR:AT1G45231.2); Has 891 Blast hits to 591 proteins in 275 species: Archae - 68; Bacteria - 248; Metazoa - 211; Fungi - 176; Plants - 45; Viruses - 3; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G30550.1p  transcript_id AT1G30550.1  protein_id AT1G30550.1p  transcript_id AT1G30550.1  
At1g30550	chr1:010822341	0.0	C/10822341-10822409,10822498-10822621,10822743-10822834,10823090-10823225,10823315-10823613	AT1G30550.2 CDS  gene_syn F26G16.17, F26G16_17  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: WW domain-containing protein (TAIR:AT1G45231.2).  protein_id AT1G30550.2p  transcript_id AT1G30550.2  protein_id AT1G30550.2p  transcript_id AT1G30550.2  
At1g30560	chr1:010824761	0.0	W/10824761-10826293	AT1G30560.1 CDS  gene_syn T5I8.1, T5I8_1  go_process transport|GO:0006810||ISS  go_process glycerol-3-phosphate transport|GO:0015794||ISS  go_function transporter activity|GO:0005215||ISS  go_function glycerol-3-phosphate transmembrane transporter activity|GO:0015169||ISS  product transporter, putative  note transporter, putative; FUNCTIONS IN: transporter activity, glycerol-3-phosphate transmembrane transporter activity; INVOLVED IN: transport, glycerol-3-phosphate transport; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: transporter, putative (TAIR:AT4G25220.1); Has 11955 Blast hits to 11911 proteins in 1226 species: Archae - 189; Bacteria - 9403; Metazoa - 713; Fungi - 702; Plants - 183; Viruses - 0; Other Eukaryotes - 765 (source: NCBI BLink).  protein_id AT1G30560.1p  transcript_id AT1G30560.1  protein_id AT1G30560.1p  transcript_id AT1G30560.1  
At1g30570	chr1:010828933	0.0	W/10828933-10831482	AT1G30570.1 CDS  gene_syn T5I8.2, T5I8_2  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function kinase activity|GO:0016301||ISS  product protein kinase family protein  note protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: THE1 (THESEUS1); kinase/ protein kinase (TAIR:AT5G54380.1); Has 82566 Blast hits to 81527 proteins in 3120 species: Archae - 48; Bacteria - 7102; Metazoa - 36469; Fungi - 6499; Plants - 18648; Viruses - 325; Other Eukaryotes - 13475 (source: NCBI BLink).  protein_id AT1G30570.1p  transcript_id AT1G30570.1  protein_id AT1G30570.1p  transcript_id AT1G30570.1  
At1g30580	chr1:010831953	0.0	C/10831953-10832051,10832248-10832298,10832619-10832711,10832906-10832981,10833089-10833205,10833365-10833429,10833748-10833861,10833961-10834059,10834221-10834312,10834640-10834763,10834867-10835034,10835368-10835454	AT1G30580.1 CDS  gene_syn T5I8.3, T5I8_3  go_component intracellular|GO:0005622||IEA  go_process response to cadmium ion|GO:0046686|16502469|IEP  go_function GTP binding|GO:0005525||IEA  product GTP binding  note GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP-binding protein-related (TAIR:AT1G56050.1); Has 12592 Blast hits to 12588 proteins in 1581 species: Archae - 216; Bacteria - 5420; Metazoa - 582; Fungi - 410; Plants - 148; Viruses - 0; Other Eukaryotes - 5816 (source: NCBI BLink).  protein_id AT1G30580.1p  transcript_id AT1G30580.1  protein_id AT1G30580.1p  transcript_id AT1G30580.1  
At1g30590	chr1:010835976	0.0	C/10835976-10836240,10836510-10836694,10836807-10836920,10837108-10837195,10837289-10837372,10837482-10837588,10837705-10837773,10837870-10837995,10838176-10838265,10838347-10838457,10838550-10838783,10838877-10838945,10839057-10839128,10839217-10839300,10839408-10839524	AT1G30590.1 CDS  gene_syn T5I8.4, T5I8_4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function RNA polymerase I transcription factor activity|GO:0003701||ISS  product RNA polymerase I specific transcription initiation factor RRN3 family protein  note RNA polymerase I specific transcription initiation factor RRN3 family protein; FUNCTIONS IN: RNA polymerase I transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA polymerase I specific transcription initiation factor RRN3 (InterPro:IPR007991); BEST Arabidopsis thaliana protein match is: RNA polymerase I specific transcription initiation factor RRN3 family protein (TAIR:AT2G34750.1); Has 244 Blast hits to 239 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 85; Plants - 33; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).  protein_id AT1G30590.1p  transcript_id AT1G30590.1  protein_id AT1G30590.1p  transcript_id AT1G30590.1  
At1g30600	chr1:010841341	0.0	C/10841341-10841762,10841861-10842142,10842229-10842499,10842585-10842910,10842997-10843279,10843367-10843439,10843518-10843613,10843697-10844094,10844197-10844329,10844692-10844906	AT1G30600.1 CDS  gene_syn T5I8.5, T5I8_5  go_component plant-type cell wall|GO:0009505|17526915|IDA  go_process proteolysis|GO:0006508||IEA  go_process negative regulation of catalytic activity|GO:0043086||IEA  go_function serine-type endopeptidase activity|GO:0004252||IEA  go_function identical protein binding|GO:0042802||IEA  go_process proteolysis|GO:0006508||ISS  product subtilase family protein  note subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8A, DUF1034 C-terminal (InterPro:IPR010435), Peptidase S8 and S53, subtilisin, kexin, sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilase family protein (TAIR:AT5G44530.1); Has 5041 Blast hits to 4469 proteins in 811 species: Archae - 129; Bacteria - 3008; Metazoa - 40; Fungi - 379; Plants - 863; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).  protein_id AT1G30600.1p  transcript_id AT1G30600.1  protein_id AT1G30600.1p  transcript_id AT1G30600.1  
At1g30610	chr1:010846676	0.0	W/10846676-10848003,10848200-10848391,10848529-10848610,10848699-10848890,10849002-10849115,10849201-10849291,10849381-10850054,10850170-10850517	AT1G30610.1 CDS  gene_syn T5I8.6, T5I8_6, emb2279, embryo defective 2279  gene emb2279  go_process embryonic development ending in seed dormancy|GO:0009793|15647901|IMP  go_process embryonic development ending in seed dormancy|GO:0009793||NAS  product emb2279 (embryo defective 2279)  note embryo defective 2279 (emb2279); INVOLVED IN: embryonic development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: DG1 (DELAYED GREENING 1) (TAIR:AT5G67570.1); Has 7842 Blast hits to 3381 proteins in 140 species: Archae - 1; Bacteria - 6; Metazoa - 162; Fungi - 38; Plants - 7154; Viruses - 0; Other Eukaryotes - 481 (source: NCBI BLink).  protein_id AT1G30610.1p  transcript_id AT1G30610.1  protein_id AT1G30610.1p  transcript_id AT1G30610.1  
At1g30620	chr1:010855496	0.0	W/10855496-10855556,10855815-10855936,10856041-10856154,10856247-10856446,10856530-10856671,10856752-10856846,10856940-10857069,10857474-10857618,10857723-10857970	AT1G30620.3 CDS  gene_syn HIGH SUGAR RESPONSE8, HSR8, MUR4, MURUS 4, T5I8.7, T5I8_7, UDP-D-XYLOSE 4-EPIMERASE 1, UXE1  gene MUR4  function encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.  go_component Golgi apparatus|GO:0005794|12566589|IDA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process plant-type cell wall biogenesis|GO:0009832|9301086|IMP  go_process arabinose biosynthetic process|GO:0019567|10517829|IMP  go_process arabinose biosynthetic process|GO:0019567|17693536|IMP  go_function catalytic activity|GO:0003824||ISS  go_function UDP-arabinose 4-epimerase activity|GO:0050373|12566589|IDA  product MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic  note MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT4G20460.2); Has 30145 Blast hits to 30139 proteins in 1699 species: Archae - 464; Bacteria - 14522; Metazoa - 629; Fungi - 394; Plants - 679; Viruses - 26; Other Eukaryotes - 13431 (source: NCBI BLink).  protein_id AT1G30620.3p  transcript_id AT1G30620.3  protein_id AT1G30620.3p  transcript_id AT1G30620.3  
At1g30620	chr1:010855496	0.0	W/10855496-10855556,10855815-10855939,10856041-10856154,10856247-10856446,10856530-10856671,10856752-10856846,10856940-10857069,10857474-10857618,10857723-10857970	AT1G30620.1 CDS  gene_syn HIGH SUGAR RESPONSE8, HSR8, MUR4, MURUS 4, T5I8.7, T5I8_7, UDP-D-XYLOSE 4-EPIMERASE 1, UXE1  gene MUR4  function encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.  go_component Golgi apparatus|GO:0005794|12566589|IDA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process plant-type cell wall biogenesis|GO:0009832|9301086|IMP  go_process arabinose biosynthetic process|GO:0019567|10517829|IMP  go_process arabinose biosynthetic process|GO:0019567|17693536|IMP  go_function catalytic activity|GO:0003824||ISS  go_function UDP-arabinose 4-epimerase activity|GO:0050373|12566589|IDA  product MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic  note MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT4G20460.2); Has 30162 Blast hits to 30156 proteins in 1698 species: Archae - 464; Bacteria - 14523; Metazoa - 619; Fungi - 396; Plants - 676; Viruses - 26; Other Eukaryotes - 13458 (source: NCBI BLink).  protein_id AT1G30620.1p  transcript_id AT1G30620.1  protein_id AT1G30620.1p  transcript_id AT1G30620.1  
At1g30620	chr1:010855496	0.0	W/10855496-10855556,10855815-10855939,10856041-10856154,10856247-10856446,10856530-10856671,10856752-10856846,10856940-10857069,10857474-10857618,10857723-10857970	AT1G30620.2 CDS  gene_syn HIGH SUGAR RESPONSE8, HSR8, MUR4, MURUS 4, T5I8.7, T5I8_7, UDP-D-XYLOSE 4-EPIMERASE 1, UXE1  gene MUR4  function encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.  go_component Golgi apparatus|GO:0005794|12566589|IDA  go_process nucleotide-sugar metabolic process|GO:0009225||ISS  go_process plant-type cell wall biogenesis|GO:0009832|9301086|IMP  go_process arabinose biosynthetic process|GO:0019567|10517829|IMP  go_process arabinose biosynthetic process|GO:0019567|17693536|IMP  go_function catalytic activity|GO:0003824||ISS  go_function UDP-arabinose 4-epimerase activity|GO:0050373|12566589|IDA  product MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic  note MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT4G20460.2); Has 30162 Blast hits to 30156 proteins in 1698 species: Archae - 464; Bacteria - 14523; Metazoa - 619; Fungi - 396; Plants - 676; Viruses - 26; Other Eukaryotes - 13458 (source: NCBI BLink).  protein_id AT1G30620.2p  transcript_id AT1G30620.2  protein_id AT1G30620.2p  transcript_id AT1G30620.2  
At1g30630	chr1:010858546	0.0	C/10858546-10858639,10858730-10858809,10859011-10859166,10859259-10859394,10859479-10859630,10859824-10859913,10860003-10860173	AT1G30630.1 CDS  gene_syn T5I8.8, T5I8_8  go_component plasma membrane|GO:0005886|17151019|IDA  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890||IEA  go_function structural molecule activity|GO:0005198||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_process retrograde vesicle-mediated transport, Golgi to ER|GO:0006890||ISS  go_function protein transporter activity|GO:0008565||ISS  product coatomer protein epsilon subunit family protein / COPE family protein  note coatomer protein epsilon subunit family protein / COPE family protein; FUNCTIONS IN: protein transporter activity, protein binding, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: coatomer protein epsilon subunit family protein / COPE family protein (TAIR:AT2G34840.1); Has 326 Blast hits to 326 proteins in 131 species: Archae - 2; Bacteria - 5; Metazoa - 149; Fungi - 59; Plants - 65; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).  protein_id AT1G30630.1p  transcript_id AT1G30630.1  protein_id AT1G30630.1p  transcript_id AT1G30630.1  
At1g30640	chr1:010861297	0.0	W/10861297-10861520,10861697-10861871,10862109-10862192,10862309-10862550,10862732-10862963,10863237-10863316,10863396-10863480,10863705-10863836,10863920-10864033,10864133-10864180,10864257-10864341,10864436-10864492,10864570-10864700	AT1G30640.1 CDS  gene_syn T5I8.9, T5I8_9  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_component cellular_component|GO:0005575||ND  go_function protein kinase activity|GO:0004672||ISS  go_function kinase activity|GO:0016301|13678909|ISS  product protein kinase, putative  note protein kinase, putative; FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase-like (InterPro:IPR011009), Protein kinase, C-terminal (InterPro:IPR017892), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT4G14350.3); Has 82196 Blast hits to 81189 proteins in 2930 species: Archae - 64; Bacteria - 7641; Metazoa - 35591; Fungi - 7931; Plants - 14313; Viruses - 376; Other Eukaryotes - 16280 (source: NCBI BLink).  protein_id AT1G30640.1p  transcript_id AT1G30640.1  protein_id AT1G30640.1p  transcript_id AT1G30640.1  
At1g30650	chr1:010868612	0.0	W/10868612-10869180,10869831-10869971,10870391-10870973	AT1G30650.1 CDS  gene_syn AR411, AtWRKY14, T5I8.10, T5I8_10, WRKY14  gene WRKY14  function member of WRKY Transcription Factor; Group II-e  go_component nucleus|GO:0005634|16581911|IDA  go_process regulation of transcription, DNA-dependent|GO:0006355|10785665|ISS  go_function transcription factor activity|GO:0003700|10785665|ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product WRKY14; transcription factor  note WRKY14; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group Iie (InterPro:IPR017412); BEST Arabidopsis thaliana protein match is: WRKY35 (WRKY DNA-binding protein 35); transcription factor (TAIR:AT2G34830.1); Has 2000 Blast hits to 1709 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 7; Plants - 1930; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G30650.1p  transcript_id AT1G30650.1  protein_id AT1G30650.1p  transcript_id AT1G30650.1  
At1g30660	chr1:010876853	0.0	W/10876853-10876910,10877056-10877189,10877300-10877355,10877458-10877512,10877606-10877698,10877814-10877897,10878049-10878129,10878210-10878275,10878377-10878493,10878577-10878624,10878710-10878856,10878943-10879017	AT1G30660.1 CDS  gene_syn T5I8.11, T5I8_11  go_process DNA metabolic process|GO:0006259||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_process DNA modification|GO:0006304||ISS  go_function nucleic acid binding|GO:0003676||ISS  product nucleic acid binding  note nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: DNA modification, DNA metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Toprim subdomain (InterPro:IPR006154); BEST Arabidopsis thaliana protein match is: toprim domain-containing protein (TAIR:AT1G30680.1); Has 504 Blast hits to 504 proteins in 84 species: Archae - 5; Bacteria - 109; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 36; Other Eukaryotes - 334 (source: NCBI BLink).  protein_id AT1G30660.1p  transcript_id AT1G30660.1  protein_id AT1G30660.1p  transcript_id AT1G30660.1  
At1g30670	chr1:010879311	0.0	C/10879311-10879511,10879595-10880188	AT1G30670.1 CDS  gene_syn T5I8.12, T5I8_12  go_component nucleus|GO:0005634|14617066|IDA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  go_function transcription factor activity|GO:0003700||ISS  product basic helix-loop-helix (bHLH) family protein  note basic helix-loop-helix (bHLH) family protein; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix dimerisation region bHLH (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) family protein (TAIR:AT2G34820.1); Has 574 Blast hits to 574 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 568; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30670.1p  transcript_id AT1G30670.1  protein_id AT1G30670.1p  transcript_id AT1G30670.1  
At1g30680	chr1:010881665	0.0	W/10881665-10881944,10882178-10882311,10882470-10882525,10882609-10882666,10882764-10882856,10883019-10883102,10883328-10883408,10883515-10883580,10883671-10883787,10883885-10883932,10884008-10884154,10884249-10884431,10884518-10884649,10884732-10884793,10884930-10885013,10885142-10885273,10885350-10885581,10885676-10885743,10885988-10886060	AT1G30680.1 CDS  go_process DNA metabolic process|GO:0006259||IEA  go_process DNA replication|GO:0006260||IEA  go_function nucleic acid binding|GO:0003676||IEA  go_function DNA helicase activity|GO:0003678||IEA  go_function ATP binding|GO:0005524||IEA  product toprim domain-containing protein  note toprim domain-containing protein; FUNCTIONS IN: DNA helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: DNA replication, DNA metabolic process; CONTAINS InterPro DOMAIN/s: Toprim subdomain (InterPro:IPR006154), DNA helicase, DnaB-like, C-terminal (InterPro:IPR007694); BEST Arabidopsis thaliana protein match is: nucleic acid binding (TAIR:AT1G30660.1); Has 875 Blast hits to 869 proteins in 115 species: Archae - 0; Bacteria - 107; Metazoa - 40; Fungi - 0; Plants - 35; Viruses - 109; Other Eukaryotes - 584 (source: NCBI BLink).  protein_id AT1G30680.1p  transcript_id AT1G30680.1  protein_id AT1G30680.1p  transcript_id AT1G30680.1  
At1g30690	chr1:010888284	0.0	W/10888284-10889384,10889471-10889734,10889828-10890085	AT1G30690.1 CDS  gene_syn T5I8.14, T5I8_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 52659 Blast hits to 27496 proteins in 1404 species: Archae - 277; Bacteria - 6323; Metazoa - 18776; Fungi - 4501; Plants - 1964; Viruses - 383; Other Eukaryotes - 20435 (source: NCBI BLink).  protein_id AT1G30690.1p  transcript_id AT1G30690.1  protein_id AT1G30690.1p  transcript_id AT1G30690.1  
At1g30690	chr1:010888284	0.0	W/10888284-10889384,10889471-10889734,10889828-10890085	AT1G30690.2 CDS  gene_syn T5I8.14, T5I8_14  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|17644812|IDA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein  note SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 52659 Blast hits to 27496 proteins in 1404 species: Archae - 277; Bacteria - 6323; Metazoa - 18776; Fungi - 4501; Plants - 1964; Viruses - 383; Other Eukaryotes - 20435 (source: NCBI BLink).  protein_id AT1G30690.2p  transcript_id AT1G30690.2  protein_id AT1G30690.2p  transcript_id AT1G30690.2  
At1g30700	chr1:010892623	0.0	W/10892623-10893250,10893482-10894437	AT1G30700.1 CDS  gene_syn T5I8.15, T5I8_15  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: stem, hypocotyl, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT4G20830.2); Has 2759 Blast hits to 2741 proteins in 499 species: Archae - 11; Bacteria - 1200; Metazoa - 0; Fungi - 1065; Plants - 335; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G30700.1p  transcript_id AT1G30700.1  protein_id AT1G30700.1p  transcript_id AT1G30700.1  
At1g30710	chr1:010895280	0.0	W/10895280-10896875	AT1G30710.1 CDS  gene_syn T5I8.16, T5I8_16  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G34575.1); Has 2393 Blast hits to 2352 proteins in 381 species: Archae - 6; Bacteria - 874; Metazoa - 0; Fungi - 1058; Plants - 338; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).  protein_id AT1G30710.1p  transcript_id AT1G30710.1  protein_id AT1G30710.1p  transcript_id AT1G30710.1  
At1g30720	chr1:010898197	0.0	W/10898197-10899780	AT1G30720.1 CDS  gene_syn T5I8.17, T5I8_17  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G30730.1); Has 2312 Blast hits to 2301 proteins in 375 species: Archae - 6; Bacteria - 828; Metazoa - 0; Fungi - 1018; Plants - 369; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).  protein_id AT1G30720.1p  transcript_id AT1G30720.1  protein_id AT1G30720.1p  transcript_id AT1G30720.1  
At1g30730	chr1:010900854	0.0	W/10900854-10902434	AT1G30730.1 CDS  gene_syn T5I8.18, T5I8_18  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT1G30720.1); Has 2836 Blast hits to 2826 proteins in 501 species: Archae - 26; Bacteria - 1106; Metazoa - 7; Fungi - 1085; Plants - 423; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).  protein_id AT1G30730.1p  transcript_id AT1G30730.1  protein_id AT1G30730.1p  transcript_id AT1G30730.1  
At1g30740	chr1:010903029	0.0	W/10903029-10904630	AT1G30740.1 CDS  gene_syn T5I8.19, T5I8_19  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: ATSEC1A; FAD binding / catalytic/ electron carrier/ oxidoreductase (TAIR:AT1G01980.1); Has 2830 Blast hits to 2698 proteins in 479 species: Archae - 8; Bacteria - 1236; Metazoa - 1; Fungi - 1125; Plants - 347; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).  protein_id AT1G30740.1p  transcript_id AT1G30740.1  protein_id AT1G30740.1p  transcript_id AT1G30740.1  
At1g30750	chr1:010905050	0.0	C/10905050-10905688	AT1G30750.1 CDS  gene_syn T5I8.20  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, pollen tube; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1720 (InterPro:IPR013182); Has 1056 Blast hits to 518 proteins in 153 species: Archae - 0; Bacteria - 268; Metazoa - 168; Fungi - 142; Plants - 17; Viruses - 16; Other Eukaryotes - 445 (source: NCBI BLink).  protein_id AT1G30750.1p  transcript_id AT1G30750.1  protein_id AT1G30750.1p  transcript_id AT1G30750.1  
At1g30755	chr1:010905991	0.0	C/10905991-10906477,10906563-10906607,10906684-10906760,10906856-10906972,10907053-10907150,10907240-10907309,10907386-10907483,10907560-10907653,10907737-10907827,10907925-10908017,10908098-10908426,10908525-10908773	AT1G30755.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34320.1); Has 262 Blast hits to 228 proteins in 50 species: Archae - 0; Bacteria - 7; Metazoa - 53; Fungi - 15; Plants - 160; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G30755.1p  transcript_id AT1G30755.1  protein_id AT1G30755.1p  transcript_id AT1G30755.1  
At1g30757	chr1:010909287	0.0	W/10909287-10909391	AT1G30757.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30757.1p  transcript_id AT1G30757.1  protein_id AT1G30757.1p  transcript_id AT1G30757.1  
At1g30760	chr1:010918321	0.0	W/10918321-10918817,10919198-10919684,10919821-10920441	AT1G30760.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_function catalytic activity|GO:0003824||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  go_function electron carrier activity|GO:0009055||ISS  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, pedicel, flower, root; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: MEE23 (MATERNAL EFFECT EMBRYO ARREST 23); FAD binding / catalytic/ electron carrier/ oxidoreductase (TAIR:AT2G34790.1); Has 3105 Blast hits to 3071 proteins in 519 species: Archae - 32; Bacteria - 1387; Metazoa - 30; Fungi - 1091; Plants - 347; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).  protein_id AT1G30760.1p  transcript_id AT1G30760.1  protein_id AT1G30760.1p  transcript_id AT1G30760.1  
At1g30780	chr1:010923919	0.0	C/10923919-10924055,10924160-10924290,10924365-10924691,10925182-10925580,10926107-10926561	AT1G30780.1 CDS  gene_syn T17H7.3, T17H7_3  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G30790.1); Has 2732 Blast hits to 1596 proteins in 186 species: Archae - 2; Bacteria - 159; Metazoa - 678; Fungi - 148; Plants - 1244; Viruses - 151; Other Eukaryotes - 350 (source: NCBI BLink).  protein_id AT1G30780.1p  transcript_id AT1G30780.1  protein_id AT1G30780.1p  transcript_id AT1G30780.1  
At1g30784	chr1:010929536	0.0	C/10929536-10930090	AT1G30784.1 pseudogenic_transcript  pseudo  function Pseudogene of AT5G01080; beta-galactosidase  
At1g30790	chr1:010932713	0.0	W/10932713-10933912	AT1G30790.1 CDS  gene_syn T17H7.6, T17H7_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G32660.1); Has 1008 Blast hits to 974 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1008; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30790.1p  transcript_id AT1G30790.1  protein_id AT1G30790.1p  transcript_id AT1G30790.1  
At1g30795	chr1:010935831	0.0	W/10935831-10936160	AT1G30795.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 34 Blast hits to 32 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 20; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G30795.1p  transcript_id AT1G30795.1  protein_id AT1G30795.1p  transcript_id AT1G30795.1  
At1g30800	chr1:010936995	0.0	W/10936995-10937714	AT1G30800.1 CDS  gene_syn T17H7.8, T17H7_8  go_component anchored to membrane|GO:0031225|12068095|TAS  go_component anchored to membrane|GO:0031225|12805588|TAS  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29980.1); Has 38 Blast hits to 38 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G30800.1p  transcript_id AT1G30800.1  protein_id AT1G30800.1p  transcript_id AT1G30800.1  
At1g30810	chr1:010938139	0.0	C/10938139-10938288,10938377-10938660,10938748-10939321,10939418-10939951,10940041-10940757,10940843-10940920,10941019-10941105,10941470-10941505	AT1G30810.1 CDS  gene_syn T17H7.10, T17H7_10  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: MEE27 (maternal effect embryo arrest 27); transcription factor (TAIR:AT2G34880.1); Has 1543 Blast hits to 1140 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 960; Fungi - 297; Plants - 152; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).  protein_id AT1G30810.1p  transcript_id AT1G30810.1  protein_id AT1G30810.1p  transcript_id AT1G30810.1  
At1g30814	chr1:010942826	0.0	C/10942826-10942909,10943007-10943060,10943154-10943561,10943644-10943750,10943868-10943984,10944078-10944225	AT1G30814.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); Has 78 Blast hits to 78 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G30814.1p  transcript_id AT1G30814.1  protein_id AT1G30814.1p  transcript_id AT1G30814.1  
At1g30814	chr1:010942826	0.0	C/10942826-10942909,10943007-10943060,10943154-10943561,10943644-10943750,10943868-10943984,10944078-10944225	AT1G30814.3 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); Has 78 Blast hits to 78 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G30814.3p  transcript_id AT1G30814.3  protein_id AT1G30814.3p  transcript_id AT1G30814.3  
At1g30814	chr1:010943139	0.0	C/10943139-10943561,10943644-10943750,10943868-10943984,10944078-10944225	AT1G30814.2 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); Has 71 Blast hits to 71 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G30814.2p  transcript_id AT1G30814.2  protein_id AT1G30814.2p  transcript_id AT1G30814.2  
At1g30820	chr1:010945251	0.0	C/10945251-10945432,10945516-10945609,10945697-10945777,10945859-10945907,10946001-10946086,10946176-10946403,10946484-10946522,10946616-10946705,10946797-10946859,10946938-10947007,10947099-10947145,10947227-10947289,10947372-10947422,10947534-10947617,10947712-10947776,10947884-10947940,10948025-10948142,10948225-10948275,10948368-10948454,10948550-10948629,10948708-10948825	AT1G30820.1 CDS  gene_syn T17H7.12, T17H7_12  go_process pyrimidine nucleotide biosynthetic process|GO:0006221||IEA  go_process pyrimidine ribonucleotide metabolic process|GO:0009218||IEA  go_function catalytic activity|GO:0003824||IEA  go_function CTP synthase activity|GO:0003883||IEA  go_function CTP synthase activity|GO:0003883||ISS  product CTP synthase, putative / UTP--ammonia ligase, putative  note CTP synthase, putative / UTP--ammonia ligase, putative; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase/ catalytic (TAIR:AT4G20320.2); Has 8060 Blast hits to 8030 proteins in 1726 species: Archae - 146; Bacteria - 2991; Metazoa - 225; Fungi - 172; Plants - 89; Viruses - 0; Other Eukaryotes - 4437 (source: NCBI BLink).  protein_id AT1G30820.1p  transcript_id AT1G30820.1  protein_id AT1G30820.1p  transcript_id AT1G30820.1  
At1g30825	chr1:010961106	0.0	W/10961106-10961167,10961358-10961424,10961518-10961725,10961821-10961978,10962082-10962159,10962238-10962370,10962467-10962558,10962685-10962741,10962812-10962877,10962964-10962999	AT1G30825.1 CDS  gene_syn ACTIN-RELATED PROTEIN C2A, ARPC2A, DIS2, DISTORTED TRICHOMES 2  gene DIS2  function Involved in trichome maturation. mutant displays enlarged trichomes  go_component Arp2/3 protein complex|GO:0005885|15653407|TAS  go_process actin filament organization|GO:0007015|10572033|TAS  go_process trichome morphogenesis|GO:0010090|1843415|NAS  go_function structural molecule activity|GO:0005198||ISS  product DIS2 (DISTORTED TRICHOMES 2); structural molecule  note DISTORTED TRICHOMES 2 (DIS2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: actin filament organization, trichome morphogenesis; LOCATED IN: Arp2/3 protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arp2/3 complex, 34kDa subunit p34-Arc (InterPro:IPR007188); BEST Arabidopsis thaliana protein match is: arpc2b (actin-related protein C2B); structural molecule (TAIR:AT2G33385.1); Has 274 Blast hits to 274 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 87; Plants - 29; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).  protein_id AT1G30825.1p  transcript_id AT1G30825.1  protein_id AT1G30825.1p  transcript_id AT1G30825.1  
At1g30830	chr1:010963573	0.0	C/10963573-10963646	AT1G30830.1 tRNA  gene_syn 50967.TRNA-VAL-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Val (anticodon: AAC)  transcript_id AT1G30830.1  
At1g30835	chr1:010966907	0.0	W/10966907-10968851	AT1G30835.1 mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU1-2  gene SADHU1-2  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  
At1g30835	chr1:010966907	0.0	W/10966907-10968878	AT1G30835.2 mRNA_TE_gene  pseudo  gene_syn SADHU NON-CODING RETROTRANSPOSON, SADHU1-2  gene SADHU1-2  function Member of Sadhu non-coding retrotransposon family  note Transposable element gene  transcript_id AT1G30835.2  
At1g30840	chr1:010974581	0.0	W/10974581-10975729	AT1G30840.1 CDS  gene_syn ATPUP4, T17H7.15, T17H7_15  gene ATPUP4  function Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.  go_component membrane|GO:0016020|10662864|TAS  go_process purine transport|GO:0006863|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345|10662864|TAS  go_function purine transmembrane transporter activity|GO:0005345||ISS  product ATPUP4; purine transmembrane transporter  note ATPUP4; FUNCTIONS IN: purine transmembrane transporter activity; INVOLVED IN: purine transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: PUP1 (PURINE PERMEASE 1); purine nucleoside transmembrane transporter/ purine transmembrane transporter (TAIR:AT1G28230.1); Has 400 Blast hits to 393 proteins in 76 species: Archae - 5; Bacteria - 67; Metazoa - 35; Fungi - 5; Plants - 211; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G30840.1p  transcript_id AT1G30840.1  protein_id AT1G30840.1p  transcript_id AT1G30840.1  
At1g30845	chr1:010979856	0.0	W/10979856-10979957,10980044-10980214,10980344-10980427	AT1G30845.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 71 Blast hits to 71 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 19; Plants - 11; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G30845.1p  transcript_id AT1G30845.1  protein_id AT1G30845.1p  transcript_id AT1G30845.1  
At1g30850	chr1:010985116	0.0	W/10985116-10986018	AT1G30850.1 CDS  gene_syn T17H7.17, T17H7_17  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34910.1); Has 26 Blast hits to 25 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30850.1p  transcript_id AT1G30850.1  protein_id AT1G30850.1p  transcript_id AT1G30850.1  
At1g30860	chr1:010986696	0.0	C/10986696-10987010,10987099-10987420,10987505-10988188,10988276-10988394,10988494-10989246	AT1G30860.1 CDS  gene_syn T17H7.18  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product protein binding / zinc ion binding  note protein binding / zinc ion binding; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: stem, pollen tube, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: EDA18 (embryo sac development arrest 18); protein binding / zinc ion binding (TAIR:AT2G34920.1); Has 4323 Blast hits to 3617 proteins in 281 species: Archae - 9; Bacteria - 116; Metazoa - 1982; Fungi - 233; Plants - 277; Viruses - 96; Other Eukaryotes - 1610 (source: NCBI BLink).  protein_id AT1G30860.1p  transcript_id AT1G30860.1  protein_id AT1G30860.1p  transcript_id AT1G30860.1  
At1g30870	chr1:010991535	0.0	W/10991535-10991822,10992124-10992885	AT1G30870.1 CDS  gene_syn T17H7.19  go_component endomembrane system|GO:0012505||IEA  go_process response to oxidative stress|GO:0006979||IEA  go_function peroxidase activity|GO:0004601||IEA  go_function electron carrier activity|GO:0009055||IEA  go_function heme binding|GO:0020037||IEA  go_function peroxidase activity|GO:0004601||ISS  product cationic peroxidase, putative  note cationic peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT1G49570.1); Has 3070 Blast hits to 3058 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 288; Plants - 2733; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).  protein_id AT1G30870.1p  transcript_id AT1G30870.1  protein_id AT1G30870.1p  transcript_id AT1G30870.1  
At1g30880	chr1:010993379	0.0	C/10993379-10993506,10993822-10994056	AT1G30880.1 CDS  gene_syn F17F8.25  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30880.1p  transcript_id AT1G30880.1  protein_id AT1G30880.1p  transcript_id AT1G30880.1  
At1g30890	chr1:010994890	0.0	W/10994890-10995060,10995144-10995242,10995338-10995489,10995612-10995999	AT1G30890.1 CDS  gene_syn F17F8.24  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane HRF1 family protein  note integral membrane HRF1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Hrf1 (InterPro:IPR005578); BEST Arabidopsis thaliana protein match is: integral membrane HRF1 family protein (TAIR:AT3G59500.1); Has 338 Blast hits to 338 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 89; Plants - 40; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G30890.1p  transcript_id AT1G30890.1  protein_id AT1G30890.1p  transcript_id AT1G30890.1  
At1g30890	chr1:010994890	0.0	W/10994890-10995060,10995144-10995242,10995338-10995489,10995612-10995999	AT1G30890.2 CDS  gene_syn F17F8.24  go_component integral to membrane|GO:0016021||ISS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product integral membrane HRF1 family protein  note integral membrane HRF1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Hrf1 (InterPro:IPR005578); BEST Arabidopsis thaliana protein match is: integral membrane HRF1 family protein (TAIR:AT3G59500.1); Has 338 Blast hits to 338 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 89; Plants - 40; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).  protein_id AT1G30890.2p  transcript_id AT1G30890.2  protein_id AT1G30890.2p  transcript_id AT1G30890.2  
At1g30900	chr1:010997275	0.0	W/10997275-10997569,10998088-10998780,10998853-10998941,10999027-10999096,10999178-10999261,10999350-10999426,10999508-10999589,10999674-10999756,10999844-10999907,10999984-11000112,11000199-11000302,11000418-11000543	AT1G30900.1 CDS  gene_syn F17F8.23  go_function calcium ion binding|GO:0005509||IEA  go_component integral to plasma membrane|GO:0005887||ISS  go_component Golgi transport complex|GO:0017119|10888666|IPI  go_process protein targeting to vacuole|GO:0006623|10871276|TAS  go_process protein targeting to vacuole|GO:0006623||ISS  product vacuolar sorting receptor, putative  note vacuolar sorting receptor, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: vacuolar sorting receptor, putative (TAIR:AT2G34940.1); Has 11009 Blast hits to 5251 proteins in 178 species: Archae - 2; Bacteria - 38; Metazoa - 10235; Fungi - 4; Plants - 219; Viruses - 0; Other Eukaryotes - 511 (source: NCBI BLink).  protein_id AT1G30900.1p  transcript_id AT1G30900.1  protein_id AT1G30900.1p  transcript_id AT1G30900.1  
At1g30910	chr1:011000912	0.0	W/11000912-11001047,11001471-11001620,11001708-11001884,11001984-11002072,11002138-11002202,11002279-11002381,11002484-11002594,11002676-11002801	AT1G30910.1 CDS  gene_syn F17F8.22  go_component chloroplast|GO:0009507||IEA  go_function catalytic activity|GO:0003824||IEA  go_function molybdenum ion binding|GO:0030151||IEA  go_function pyridoxal phosphate binding|GO:0030170||IEA  go_process biological_process|GO:0008150||ND  go_function Mo-molybdopterin cofactor sulfurase activity|GO:0008265||ISS  product molybdenum cofactor sulfurase family protein  note molybdenum cofactor sulfurase family protein; FUNCTIONS IN: molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), MOSC, N-terminal beta barrel (InterPro:IPR005303), Molybdenum cofactor sulfurase, C-terminal (InterPro:IPR005302); BEST Arabidopsis thaliana protein match is: molybdenum cofactor sulfurase family protein (TAIR:AT5G44720.1); Has 1290 Blast hits to 1272 proteins in 428 species: Archae - 6; Bacteria - 645; Metazoa - 290; Fungi - 172; Plants - 53; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT1G30910.1p  transcript_id AT1G30910.1  protein_id AT1G30910.1p  transcript_id AT1G30910.1  
At1g30920	chr1:011004242	0.0	C/11004242-11005444	AT1G30920.1 CDS  gene_syn F17F8.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G42430.1); Has 758 Blast hits to 718 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 758; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30920.1p  transcript_id AT1G30920.1  protein_id AT1G30920.1p  transcript_id AT1G30920.1  
At1g30921	chr1:011007112	0.0	C/11007112-11008238	AT1G30921.1 pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At1g30925	chr1:011009888	0.0	C/11009888-11010303,11010436-11010547,11011196-11011792	AT1G30925.1 CDS  gene_syn F17F8.41, F17F8_41  go_process lipid metabolic process|GO:0006629||IEA  go_process intracellular signaling cascade|GO:0007242||IEA  go_function phospholipase C activity|GO:0004629||IEA  go_component cellular_component|GO:0005575||ND  product phospholipase C  note phospholipase C; FUNCTIONS IN: phospholipase C activity; INVOLVED IN: intracellular signaling cascade, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X region (InterPro:IPR000909), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G33020.1).  protein_id AT1G30925.1p  transcript_id AT1G30925.1  protein_id AT1G30925.1p  transcript_id AT1G30925.1  
At1g30930	chr1:011014783	0.0	C/11014783-11015913	AT1G30930.1 CDS  gene_syn F17F8.42, F17F8_42  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G33020.1); Has 517 Blast hits to 495 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 517; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30930.1p  transcript_id AT1G30930.1  protein_id AT1G30930.1p  transcript_id AT1G30930.1  
At1g30935	chr1:011017436	0.0	C/11017436-11018990	AT1G30935.1 pseudogenic_transcript  pseudo  gene_syn F17F8.20  note pseudogene, F-box protein family, contains F-box domain Pfam:PF00646  
At1g30940	chr1:011021984	0.0	C/11021984-11023320	AT1G30940.1 pseudogenic_transcript  pseudo  gene_syn F17F8.19  note pseudogene, F-box protein -related, contains TIGRfam:TIGR01640 F-box protein interaction domain  
At1g30945	chr1:011026338	0.0	C/11026338-11026784	AT1G30945.1 pseudogenic_transcript  pseudo  note pseudogene, hypothetical protein  
At1g30950	chr1:011036180	0.0	W/11036180-11037508	AT1G30950.1 CDS  gene_syn F17F8.16, UFO, UNUSUAL FLORAL ORGANS  gene UFO  function Required for the proper identity of the floral meristem. Involved in establishing the whorled pattern of floral organs, in the control of specification of the floral meristem, and in the activation of APETALA3 and PISTILLATA. UFO is found at the AP3 promoter in a LFY-dependent manner, suggesting that it works with LFY to regulate AP3 expression. UFO may also promote the ubiquitylation of LFY.  go_component ubiquitin ligase complex|GO:0000151|10607296|IPI  go_process regulation of transcription, DNA-dependent|GO:0006355|18287201|IDA  go_process ubiquitin-dependent protein catabolic process|GO:0006511|11019805|TAS  go_process meristem structural organization|GO:0009933|10607296|IMP  go_process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|GO:0031146|15047903|IGI  go_function ubiquitin-protein ligase activity|GO:0004842|18287201|IMP  go_function ubiquitin-protein ligase activity|GO:0004842||ISS  go_function transcription factor binding|GO:0008134|18287201|IPI  product UFO (UNUSUAL FLORAL ORGANS); transcription factor binding / ubiquitin-protein ligase  note UNUSUAL FLORAL ORGANS (UFO); FUNCTIONS IN: ubiquitin-protein ligase activity, transcription factor binding; INVOLVED IN: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process, meristem structural organization, regulation of transcription, DNA-dependent, ubiquitin-dependent protein catabolic process; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: shoot apex, embryo, floral meristem, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G15710.1); Has 278 Blast hits to 278 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30950.1p  transcript_id AT1G30950.1  protein_id AT1G30950.1p  transcript_id AT1G30950.1  
At1g30960	chr1:011037755	0.0	C/11037755-11037839,11037926-11038065,11038159-11038333,11038428-11038586,11038920-11039065,11039173-11039262,11039459-11039977	AT1G30960.1 CDS  gene_syn F17F8.15  go_function RNA binding|GO:0003723||IEA  go_function GTP binding|GO:0005525||IEA  go_component cytosol|GO:0005829|18433157|IDA  go_function GTP binding|GO:0005525||ISS  product GTP-binding protein (ERG)  note GTP-binding protein (ERG); FUNCTIONS IN: RNA binding, GTP binding; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein Era (InterPro:IPR005662), GTP-binding protein, HSR1-related (InterPro:IPR002917), K homology-like, alpha/beta (InterPro:IPR015946); BEST Arabidopsis thaliana protein match is: GTP binding / RNA binding (TAIR:AT5G66470.1); Has 13331 Blast hits to 12332 proteins in 1608 species: Archae - 46; Bacteria - 8318; Metazoa - 351; Fungi - 89; Plants - 122; Viruses - 0; Other Eukaryotes - 4405 (source: NCBI BLink).  protein_id AT1G30960.1p  transcript_id AT1G30960.1  protein_id AT1G30960.1p  transcript_id AT1G30960.1  
At1g30970	chr1:011040613	0.0	C/11040613-11040684,11041204-11041257,11041371-11041513,11041607-11042016,11042483-11042612,11042848-11042948,11043396-11043433	AT1G30970.2 CDS  gene_syn F17F8.14, SUF4, suppressor of FRIGIDA4  gene SUF4  function Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.  go_component nucleus|GO:0005634|17079264|IDA  go_component nucleus|GO:0005634|17138694|IDA  go_process negative regulation of flower development|GO:0009910|17079264|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|17138694|IMP  go_process histone H3-K4 methylation|GO:0051568|17079264|IDA  go_function DNA binding|GO:0003677|17138694|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|17138694|IPI  go_function protein heterodimerization activity|GO:0046982|17138694|IPI  product SUF4 (suppressor of FRIGIDA4); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor  note suppressor of FRIGIDA4 (SUF4); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding; INVOLVED IN: histone H3-K4 methylation, negative regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT3G19430.1); Has 18571 Blast hits to 12304 proteins in 775 species: Archae - 31; Bacteria - 2361; Metazoa - 8002; Fungi - 2676; Plants - 2885; Viruses - 618; Other Eukaryotes - 1998 (source: NCBI BLink).  protein_id AT1G30970.2p  transcript_id AT1G30970.2  protein_id AT1G30970.2p  transcript_id AT1G30970.2  
At1g30970	chr1:011040613	0.0	C/11040613-11040684,11041204-11041257,11041371-11041513,11041607-11042016,11042483-11042612,11042848-11042948,11043400-11043593	AT1G30970.1 CDS  gene_syn F17F8.14, SUF4, suppressor of FRIGIDA4  gene SUF4  function Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.  go_component nucleus|GO:0005634|17079264|IDA  go_component nucleus|GO:0005634|17138694|IDA  go_process negative regulation of flower development|GO:0009910|17079264|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process regulation of transcription|GO:0045449|17138694|IMP  go_process histone H3-K4 methylation|GO:0051568|17079264|IDA  go_function DNA binding|GO:0003677|17138694|IDA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function protein homodimerization activity|GO:0042803|17138694|IPI  go_function protein heterodimerization activity|GO:0046982|17138694|IPI  product SUF4 (suppressor of FRIGIDA4); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor  note suppressor of FRIGIDA4 (SUF4); FUNCTIONS IN: transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding; INVOLVED IN: histone H3-K4 methylation, negative regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, BED-type predicted (InterPro:IPR003656), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant protein-related / LEA protein-related (TAIR:AT3G19430.1); Has 18843 Blast hits to 12577 proteins in 789 species: Archae - 33; Bacteria - 2407; Metazoa - 8110; Fungi - 2711; Plants - 2911; Viruses - 628; Other Eukaryotes - 2043 (source: NCBI BLink).  protein_id AT1G30970.1p  transcript_id AT1G30970.1  protein_id AT1G30970.1p  transcript_id AT1G30970.1  
At1g30972	chr1:011044671	0.0	W/11044671-11044887,11045300-11045316	AT1G30972.2 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30974.2); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30972.2p  transcript_id AT1G30972.2  protein_id AT1G30972.2p  transcript_id AT1G30972.2  
At1g30972	chr1:011044671	0.0	W/11044671-11044910	AT1G30972.1 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30974.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30972.1p  transcript_id AT1G30972.1  protein_id AT1G30972.1p  transcript_id AT1G30972.1  
At1g30974	chr1:011047031	0.0	W/11047031-11047247,11047659-11047675	AT1G30974.2 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30972.2); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30974.2p  transcript_id AT1G30974.2  protein_id AT1G30974.2p  transcript_id AT1G30974.2  
At1g30974	chr1:011047031	0.0	W/11047031-11047270	AT1G30974.1 CDS  function Encodes a Plant thionin family protein  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30972.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30974.1p  transcript_id AT1G30974.1  protein_id AT1G30974.1p  transcript_id AT1G30974.1  
At1g30975	chr1:011048256	0.0	C/11048256-11048552	AT1G30975.1 mRNA_TE_gene  pseudo  note Transposable element gene, pseudogene, hypothetical protein  
At1g30980	chr1:011049583	0.0	C/11049583-11050729	AT1G30980.1 mRNA_TE_gene  pseudo  note Transposable element gene, Mutator-like transposase family, has a 4.2e-21 P-value blast match to O65231 /281-442 Pfam PF03108 MuDR family transposase (MuDr-element domain)  
At1g30990	chr1:011052130	0.0	W/11052130-11052316,11052792-11053063	AT1G30990.1 CDS  gene_syn F17F8.9  go_process defense response|GO:0006952||IEA  go_process response to biotic stimulus|GO:0009607||IEA  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product major latex protein-related / MLP-related  note major latex protein-related / MLP-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: major latex protein-related / MLP-related (TAIR:AT1G14960.1); Has 208 Blast hits to 187 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G30990.1p  transcript_id AT1G30990.1  protein_id AT1G30990.1p  transcript_id AT1G30990.1  
At1g31000	chr1:011053377	0.0	C/11053377-11054214,11054308-11054561	AT1G31000.1 CDS  gene_syn F17F8.8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G11590.1); Has 497 Blast hits to 485 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 497; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31000.1p  transcript_id AT1G31000.1  protein_id AT1G31000.1p  transcript_id AT1G31000.1  
At1g31010	chr1:011054926	0.0	C/11054926-11055069,11055149-11055216,11055351-11055486,11055586-11055689,11055803-11056074,11056515-11056873	AT1G31010.1 CDS  gene_syn F17F8.7, OSB4, organellar single-stranded DNA binding protein 4  gene OSB4  go_component chloroplast|GO:0009507||IEA  go_function single-stranded DNA binding|GO:0003697||IEA  go_process biological_process|GO:0008150||ND  product OSB4 (organellar single-stranded DNA binding protein 4); single-stranded DNA binding  note organellar single-stranded DNA binding protein 4 (OSB4); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9); single-stranded DNA binding (TAIR:AT4G20010.1); Has 125 Blast hits to 85 proteins in 15 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G31010.1p  transcript_id AT1G31010.1  protein_id AT1G31010.1p  transcript_id AT1G31010.1  
At1g31020	chr1:011057252	0.0	W/11057252-11057281,11057361-11057469,11057671-11057736,11057851-11057901,11057986-11058065,11058421-11058465,11058605-11058703	AT1G31020.1 CDS  gene_syn ATO2, Arabidopsis thioredoxin o2, F17F8.6  gene ATO2  go_process cell redox homeostasis|GO:0045454||IEA  product ATO2 (Arabidopsis thioredoxin o2)  note Arabidopsis thioredoxin o2 (ATO2); INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATO1 (Arabidopsis thioredoxin O1) (TAIR:AT2G35010.2); Has 8280 Blast hits to 8267 proteins in 1604 species: Archae - 109; Bacteria - 3630; Metazoa - 858; Fungi - 399; Plants - 738; Viruses - 3; Other Eukaryotes - 2543 (source: NCBI BLink).  protein_id AT1G31020.1p  transcript_id AT1G31020.1  protein_id AT1G31020.1p  transcript_id AT1G31020.1  
At1g31030	chr1:011064583	0.0	C/11064583-11067201	AT1G31030.1 mRNA_TE_gene  pseudo  gene_syn F17F8.5  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 1.0e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g31040	chr1:011069793	0.0	C/11069793-11070098,11070642-11070779,11070854-11070928,11071970-11072182	AT1G31040.1 CDS  gene_syn F17F8.4  go_process biological_process|GO:0008150||ND  product unknown protein  note unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12646.1); Has 192 Blast hits to 192 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31040.1p  transcript_id AT1G31040.1  protein_id AT1G31040.1p  transcript_id AT1G31040.1  
At1g31050	chr1:011076109	0.0	C/11076109-11076198,11076390-11076458,11076820-11076936,11077478-11078008	AT1G31050.1 CDS  gene_syn F17F8.3  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12679534|ISS  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: DNA binding / transcription factor (TAIR:AT4G05170.1); Has 66 Blast hits to 66 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31050.1p  transcript_id AT1G31050.1  protein_id AT1G31050.1p  transcript_id AT1G31050.1  
At1g31060	chr1:011078820	0.0	C/11078820-11079140	AT1G31060.1 CDS  gene_syn F17F8.2  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31060.1p  transcript_id AT1G31060.1  protein_id AT1G31060.1p  transcript_id AT1G31060.1  
At1g31070	chr1:011084951	0.0	W/11084951-11085157,11085267-11085321,11085398-11085549,11086287-11086326,11086435-11086527,11086626-11086738,11086823-11086897,11086979-11087018,11087108-11087190,11087273-11087350,11087440-11087583,11087669-11087736,11087804-11087918,11088005-11088161,11088264-11088361	AT1G31070.2 CDS  gene_syn F17F8.1  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  product UDP-N-acetylglucosamine pyrophosphorylase-related  note UDP-N-acetylglucosamine pyrophosphorylase-related; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UTP--glucose-1-phosphate uridylyltransferase family protein (TAIR:AT2G35020.1); Has 900 Blast hits to 897 proteins in 225 species: Archae - 0; Bacteria - 133; Metazoa - 353; Fungi - 180; Plants - 82; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).  protein_id AT1G31070.2p  transcript_id AT1G31070.2  protein_id AT1G31070.2p  transcript_id AT1G31070.2  
At1g31070	chr1:011084951	0.0	W/11084951-11085157,11085267-11085321,11085398-11085549,11086287-11086334	AT1G31070.1 CDS  gene_syn F17F8.1  go_component plasma membrane|GO:0005886|17644812|IDA  go_process metabolic process|GO:0008152||IEA  go_process peptidoglycan biosynthetic process|GO:0009252||IEA  go_process UDP-N-acetylgalactosamine biosynthetic process|GO:0019277||IEA  go_function nucleotidyltransferase activity|GO:0016779||IEA  product UDP-N-acetylglucosamine pyrophosphorylase-related  note UDP-N-acetylglucosamine pyrophosphorylase-related; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: peptidoglycan biosynthetic process, metabolic process, UDP-N-acetylgalactosamine biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UTP--glucose-1-phosphate uridylyltransferase family protein (TAIR:AT2G35020.1); Has 409 Blast hits to 409 proteins in 167 species: Archae - 0; Bacteria - 97; Metazoa - 158; Fungi - 96; Plants - 35; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G31070.1p  transcript_id AT1G31070.1  protein_id AT1G31070.1p  transcript_id AT1G31070.1  
At1g31072	chr1:011089491	0.0	W/11089491-11089925	AT1G31072.1 pseudogenic_transcript  pseudo  function pseudogene of F-box family protein  
At1g31080	chr1:011091832	0.0	W/11091832-11092899	AT1G31080.1 CDS  gene_syn F28K20.2, F28K20_2  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G31090.1); Has 649 Blast hits to 481 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 649; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31080.1p  transcript_id AT1G31080.1  protein_id AT1G31080.1p  transcript_id AT1G31080.1  
At1g31090	chr1:011094407	0.0	W/11094407-11094880,11095188-11095649	AT1G31090.1 CDS  gene_syn F28K20.3, F28K20_3  go_component cellular_component|GO:0005575||ND  product F-box family protein  note F-box family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G31080.1); Has 541 Blast hits to 409 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 541; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31090.1p  transcript_id AT1G31090.1  protein_id AT1G31090.1p  transcript_id AT1G31090.1  
At1g31093	chr1:011096084	0.0	C/11096084-11096599	AT1G31093.1 pseudogenic_transcript  pseudo  function pseudogene of calcium-dependant protein kinase  
At1g31100	chr1:011097034	0.0	C/11097034-11100418	AT1G31100.1 mRNA_TE_gene  pseudo  gene_syn F28K20.4, F28K20_4  note Transposable element gene, non-LTR retrotransposon family (LINE), has a 3.7e-35 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)  
At1g31110	chr1:011104113	0.0	W/11104113-11104186	AT1G31110.1 tRNA  gene_syn 51082.TRNA-ILE-1  go_component cellular_component|GO:0005575||ND  go_process translational elongation|GO:0006414|8980477|TAS  go_function triplet codon-amino acid adaptor activity|GO:0030533|8980477|TAS  product pre-tRNA  note tRNA-Ile (anticodon: AAT)  transcript_id AT1G31110.1  
At1g31120	chr1:011104375	0.0	C/11104375-11105666,11105765-11105932,11106015-11106275,11106370-11106420,11106509-11106754,11106835-11107060,11107215-11107361	AT1G31120.1 CDS  gene_syn F28K20.5, F28K20_5, KUP10  gene KUP10  function potassium transporter  go_component membrane|GO:0016020||IEA  go_process potassium ion transport|GO:0006813||IEA  go_process potassium ion transport|GO:0006813||ISS  go_function potassium ion transmembrane transporter activity|GO:0015079||ISS  product KUP10; potassium ion transmembrane transporter  note KUP10; FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: KUP11; potassium ion transmembrane transporter (TAIR:AT2G35060.1); Has 2006 Blast hits to 1982 proteins in 587 species: Archae - 13; Bacteria - 1385; Metazoa - 0; Fungi - 57; Plants - 429; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink).  protein_id AT1G31120.1p  transcript_id AT1G31120.1  protein_id AT1G31120.1p  transcript_id AT1G31120.1  
At1g31130	chr1:011114963	0.0	C/11114963-11115928	AT1G31130.1 CDS  gene_syn F28K20.6, F28K20_6  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 131 Blast hits to 129 proteins in 19 species: Archae - 2; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G31130.1p  transcript_id AT1G31130.1  protein_id AT1G31130.1p  transcript_id AT1G31130.1  
At1g31140	chr1:011118031	0.0	W/11118031-11118218,11118782-11118854,11118971-11119138,11119223-11119285,11119524-11119673	AT1G31140.1 CDS  gene_syn AGAMOUS-LIKE 63, F28K20.7, F28K20_7, agl63  gene agl63  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product agl63 (AGAMOUS-LIKE 63); DNA binding / transcription factor  note AGAMOUS-LIKE 63 (agl63); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGL42 (AGAMOUS LIKE 42); transcription factor (TAIR:AT5G62165.3); Has 4557 Blast hits to 4557 proteins in 633 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 201; Plants - 3754; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).  protein_id AT1G31140.1p  transcript_id AT1G31140.1  protein_id AT1G31140.1p  transcript_id AT1G31140.1  
At1g31150	chr1:011120097	0.0	W/11120097-11121785,11121901-11122077,11122257-11122412	AT1G31150.1 CDS  gene_syn F28K20.8, F28K20_8  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function transcription factor activity|GO:0003700||IEA  product transcription factor  note transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1985 (InterPro:IPR015410), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36970.1); Has 238 Blast hits to 231 proteins in 35 species: Archae - 0; Bacteria - 1; Metazoa - 6; Fungi - 4; Plants - 217; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).  protein_id AT1G31150.1p  transcript_id AT1G31150.1  protein_id AT1G31150.1p  transcript_id AT1G31150.1  
At1g31160	chr1:011122880	0.0	C/11122880-11122947,11123029-11123146,11123404-11123551,11123722-11123808,11123886-11123993,11124072-11124106	AT1G31160.1 CDS  gene_syn F28K20.9, F28K20_9  go_component chloroplast|GO:0009507|18431481|IDA  go_function catalytic activity|GO:0003824||IEA  go_process biological_process|GO:0008150||ND  go_function protein kinase C binding|GO:0005080||ISS  go_function zinc ion binding|GO:0008270||ISS  product zinc-binding protein, putative / protein kinase C inhibitor, putative  note zinc-binding protein, putative / protein kinase C inhibitor, putative; FUNCTIONS IN: protein kinase C binding, zinc ion binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); BEST Arabidopsis thaliana protein match is: zinc-binding protein, putative / protein kinase C inhibitor, putative (TAIR:AT3G56490.1); Has 5594 Blast hits to 5592 proteins in 1456 species: Archae - 103; Bacteria - 2673; Metazoa - 341; Fungi - 103; Plants - 63; Viruses - 0; Other Eukaryotes - 2311 (source: NCBI BLink).  protein_id AT1G31160.1p  transcript_id AT1G31160.1  protein_id AT1G31160.1p  transcript_id AT1G31160.1  
At1g31163	chr1:011129311	0.0	C/11129311-11129516,11129606-11129825,11130090-11130239	AT1G31163.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box associated type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G30930.1); Has 54 Blast hits to 52 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31163.1p  transcript_id AT1G31163.1  protein_id AT1G31163.1p  transcript_id AT1G31163.1  
At1g31166	chr1:011130616	0.0	W/11130616-11130981	AT1G31166.1 mRNA_TE_gene  pseudo  note Transposable element gene, hAT-like transposase family (hobo/Ac/Tam3), has a 1.7e-38 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)  
At1g31170	chr1:011133521	0.0	W/11133521-11133590,11133683-11133840,11133927-11133960,11134032-11134125,11134213-11134228	AT1G31170.3 CDS  gene_syn ATSRX, F28K20.12, F28K20_12, SRX, SULFIREDOXIN  gene SRX  function encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress  go_component chloroplast|GO:0009507|17217469|IDA  go_process response to oxidative stress|GO:0006979|17217469|IDA  go_function DNA binding|GO:0003677||ISS  go_function oxidoreductase activity, acting on sulfur group of donors|GO:0016667|17217469|IDA  product SRX (SULFIREDOXIN); DNA binding / oxidoreductase, acting on sulfur group of donors  note SULFIREDOXIN (SRX); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, DNA binding; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfiredoxin (InterPro:IPR016692), ParB-like nuclease (InterPro:IPR003115); Has 163 Blast hits to 163 proteins in 63 species: Archae - 0; Bacteria - 39; Metazoa - 75; Fungi - 3; Plants - 20; Viruses - 2; Other Eukaryotes - 24 (source: NCBI BLink).  protein_id AT1G31170.3p  transcript_id AT1G31170.3  protein_id AT1G31170.3p  transcript_id AT1G31170.3  
At1g31170	chr1:011133521	0.0	W/11133521-11133590,11133683-11133846,11133927-11133960,11134032-11134125,11134213-11134228	AT1G31170.1 CDS  gene_syn ATSRX, F28K20.12, F28K20_12, SRX, SULFIREDOXIN  gene SRX  function encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress  go_component chloroplast|GO:0009507|17217469|IDA  go_process response to oxidative stress|GO:0006979|17217469|IDA  go_function DNA binding|GO:0003677||ISS  go_function oxidoreductase activity, acting on sulfur group of donors|GO:0016667|17217469|IDA  product SRX (SULFIREDOXIN); DNA binding / oxidoreductase, acting on sulfur group of donors  note SULFIREDOXIN (SRX); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, DNA binding; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfiredoxin (InterPro:IPR016692), ParB-like nuclease (InterPro:IPR003115); Has 219 Blast hits to 219 proteins in 88 species: Archae - 0; Bacteria - 76; Metazoa - 75; Fungi - 13; Plants - 20; Viruses - 2; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G31170.1p  transcript_id AT1G31170.1  protein_id AT1G31170.1p  transcript_id AT1G31170.1  
At1g31170	chr1:011133521	0.0	W/11133521-11133590,11133683-11133846,11133927-11133960,11134032-11134125,11134213-11134228	AT1G31170.2 CDS  gene_syn ATSRX, F28K20.12, F28K20_12, SRX, SULFIREDOXIN  gene SRX  function encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress  go_component chloroplast|GO:0009507|17217469|IDA  go_process response to oxidative stress|GO:0006979|17217469|IDA  go_function DNA binding|GO:0003677||ISS  go_function oxidoreductase activity, acting on sulfur group of donors|GO:0016667|17217469|IDA  product SRX (SULFIREDOXIN); DNA binding / oxidoreductase, acting on sulfur group of donors  note SULFIREDOXIN (SRX); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, DNA binding; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sulfiredoxin (InterPro:IPR016692), ParB-like nuclease (InterPro:IPR003115); Has 219 Blast hits to 219 proteins in 88 species: Archae - 0; Bacteria - 76; Metazoa - 75; Fungi - 13; Plants - 20; Viruses - 2; Other Eukaryotes - 33 (source: NCBI BLink).  protein_id AT1G31170.2p  transcript_id AT1G31170.2  protein_id AT1G31170.2p  transcript_id AT1G31170.2  
At1g31173	chr1:011137365	0.0	W/11137365-11138969	AT1G31173.1 miRNA  gene_syn MICRORNA167D, MIR167D  gene MIR167D  function Encodes a microRNA that targets ARF family members ARF6 and ARF8. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAAGCUGCCAGCAUGAUCUGG  product MIR167D (MICRORNA167D); miRNA  transcript_id AT1G31173.1  
At1g31175	chr1:011140549	0.0	W/11140549-11140905	AT1G31175.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31175.1p  transcript_id AT1G31175.1  protein_id AT1G31175.1p  transcript_id AT1G31175.1  
At1g31180	chr1:011142843	0.0	C/11142843-11142911,11142999-11143205,11143290-11143397,11143494-11143610,11143690-11143776,11143851-11144015,11144087-11144198,11144268-11144617	AT1G31180.1 CDS  gene_syn F28K20.14, F28K20_14  function The AtIMD3 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_process response to salt stress|GO:0009651|17916636|IEP  go_component plastid|GO:0009536|15849421|ISS  go_process metabolic process|GO:0008152||ISS  go_process leucine biosynthetic process|GO:0009098|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862|15849421|IGI  go_function 3-isopropylmalate dehydrogenase activity|GO:0003862||ISS  product 3-isopropylmalate dehydrogenase, chloroplast, putative  note 3-isopropylmalate dehydrogenase, chloroplast, putative; FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, response to salt stress, metabolic process; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, plastid; EXPRESSED IN: fruit, root, leaf; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804); BEST Arabidopsis thaliana protein match is: 3-isopropylmalate dehydrogenase, chloroplast, putative (TAIR:AT5G14200.1); Has 11249 Blast hits to 11249 proteins in 1564 species: Archae - 249; Bacteria - 4870; Metazoa - 487; Fungi - 587; Plants - 155; Viruses - 0; Other Eukaryotes - 4901 (source: NCBI BLink).  protein_id AT1G31180.1p  transcript_id AT1G31180.1  protein_id AT1G31180.1p  transcript_id AT1G31180.1  
At1g31190	chr1:011144861	0.0	W/11144861-11145160,11145344-11145411,11145522-11145655,11145754-11145842,11145943-11146000,11146066-11146118,11146211-11146423,11146510-11146611,11146702-11146800	AT1G31190.1 CDS  gene_syn F28K20.15, F28K20_15, IMPL1, MYO-INOSITOL MONOPHOSPHATASE LIKE 1  gene IMPL1  function Encodes a myo-inositol monophosphatase IMPL1 (myo-Inositol monophosphatase like 1).  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process sulfur metabolic process|GO:0006790||ISS  go_function inositol or phosphatidylinositol phosphatase activity|GO:0004437||ISS  go_function 3 (2 ),5 -bisphosphate nucleotidase activity|GO:0008441||ISS  go_function inositol-1(or 4)-monophosphatase activity|GO:0008934|19339506|IDA  product IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1); 3 (2 ),5 -bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase  note MYO-INOSITOL MONOPHOSPHATASE LIKE 1 (IMPL1); FUNCTIONS IN: 3 (2 ),5 -bisphosphate nucleotidase activity, inositol-1(or 4)-monophosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760); BEST Arabidopsis thaliana protein match is: VTC4; 3 (2 ),5 -bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase (TAIR:AT3G02870.3); Has 10711 Blast hits to 10701 proteins in 1321 species: Archae - 150; Bacteria - 4541; Metazoa - 412; Fungi - 205; Plants - 175; Viruses - 0; Other Eukaryotes - 5228 (source: NCBI BLink).  protein_id AT1G31190.1p  transcript_id AT1G31190.1  protein_id AT1G31190.1p  transcript_id AT1G31190.1  
At1g31200	chr1:011146923	0.0	C/11146923-11147319,11147415-11147506,11147625-11147678	AT1G31200.1 CDS  gene_syn ATPP2-A9, F28K20.16, F28K20_16, Phloem protein 2-A9  gene ATPP2-A9  go_function carbohydrate binding|GO:0030246|12529520|ISS  product ATPP2-A9 (Phloem protein 2-A9); carbohydrate binding  note Phloem protein 2-A9 (ATPP2-A9); FUNCTIONS IN: carbohydrate binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ATPP2-A10 (PHLOEM PROTEIN 2-A10) (TAIR:AT1G10155.1); Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31200.1p  transcript_id AT1G31200.1  protein_id AT1G31200.1p  transcript_id AT1G31200.1  
At1g31210	chr1:011148254	0.0	C/11148254-11152501	AT1G31210.1 mRNA_TE_gene  pseudo  gene_syn F28K20.17, F28K20_17  note Transposable element gene, copia-like retrotransposon family, has a 2.3e-253 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)  
At1g31220	chr1:011157064	0.0	W/11157064-11157409,11157584-11157698,11157805-11157981,11158081-11158207,11158295-11158408	AT1G31220.1 CDS  gene_syn F28K20.18, F28K20_18  function N10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamide  go_component chloroplast|GO:0009507|18431481|IDA  go_process biosynthetic process|GO:0009058||ISS  go_process purine ribonucleotide biosynthetic process|GO:0009152|7920700|IGI  go_process purine ribonucleotide biosynthetic process|GO:0009152||ISS  go_function phosphoribosylglycinamide formyltransferase activity|GO:0004644|7920700|IGI  go_function formyltetrahydrofolate deformylase activity|GO:0008864||ISS  go_function hydroxymethyl-, formyl- and related transferase activity|GO:0016742||ISS  product phosphoribosylglycinamide formyltransferase  note phosphoribosylglycinamide formyltransferase; FUNCTIONS IN: phosphoribosylglycinamide formyltransferase activity, hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity; INVOLVED IN: purine ribonucleotide biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosylglycinamide formyltransferase, active site (InterPro:IPR001555), Phosphoribosylglycinamide formyltransferase (InterPro:IPR004607), Formyl transferase, N-terminal (InterPro:IPR002376); BEST Arabidopsis thaliana protein match is: formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase (TAIR:AT4G17360.1); Has 9092 Blast hits to 9092 proteins in 1463 species: Archae - 78; Bacteria - 5390; Metazoa - 288; Fungi - 133; Plants - 77; Viruses - 2; Other Eukaryotes - 3124 (source: NCBI BLink).  protein_id AT1G31220.1p  transcript_id AT1G31220.1  protein_id AT1G31220.1p  transcript_id AT1G31220.1  
At1g31230	chr1:011158744	0.0	C/11158744-11158989,11159086-11159178,11159253-11159336,11159421-11159556,11159661-11159806,11159940-11160165,11160246-11160328,11160414-11160608,11160731-11160829,11160955-11161068,11161157-11161244,11161324-11161532,11161622-11161674,11161790-11162093,11162198-11162286,11162402-11162776,11162860-11163055	AT1G31230.1 CDS  gene_syn AK-HSDH, AK-HSDH I, ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE, ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I, F28K20.19, F28K20_19  gene AK-HSDH I  function Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_process aspartate family amino acid biosynthetic process|GO:0009067|8204822|TAS  go_function aspartate kinase activity|GO:0004072|16216875|IDA  go_function homoserine dehydrogenase activity|GO:0004412|16216875|IDA  product AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase  note ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I (AK-HSDH I); FUNCTIONS IN: homoserine dehydrogenase activity, aspartate kinase activity; INVOLVED IN: aspartate family amino acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Amino acid-binding ACT (InterPro:IPR002912), Aspartate/homoserine dehydrogenase, NAD-binding (InterPro:IPR005106), Aspartate kinase, conserved site (InterPro:IPR018042), Aspartate kinase region (InterPro:IPR001341), NAD(P)-binding (InterPro:IPR016040), Bifunctional aspartokinase/homoserine dehydrogenase I (InterPro:IPR011147); BEST Arabidopsis thaliana protein match is: bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (TAIR:AT4G19710.2); Has 11369 Blast hits to 11147 proteins in 1385 species: Archae - 266; Bacteria - 5873; Metazoa - 6; Fungi - 196; Plants - 159; Viruses - 0; Other Eukaryotes - 4869 (source: NCBI BLink).  protein_id AT1G31230.1p  transcript_id AT1G31230.1  protein_id AT1G31230.1p  transcript_id AT1G31230.1  
At1g31240	chr1:011164065	0.0	C/11164065-11164898	AT1G31240.1 CDS  gene_syn F28K20.20, F28K20_20  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: TAF8 (TBP-ASSOCIATED FACTOR 8); DNA binding (TAIR:AT4G34340.1); Has 104 Blast hits to 104 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G31240.1p  transcript_id AT1G31240.1  protein_id AT1G31240.1p  transcript_id AT1G31240.1  
At1g31245	chr1:011165705	0.0	C/11165705-11165830	AT1G31245.1 pseudogenic_transcript  pseudo  function Encodes a defensin-like (DEFL) family protein.  
At1g31250	chr1:011166658	0.0	C/11166658-11167097,11167443-11167500	AT1G31250.1 CDS  gene_syn T19E23.3, T19E23_3  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22485.1); Has 23079 Blast hits to 8163 proteins in 675 species: Archae - 67; Bacteria - 2586; Metazoa - 4792; Fungi - 1960; Plants - 4038; Viruses - 980; Other Eukaryotes - 8656 (source: NCBI BLink).  protein_id AT1G31250.1p  transcript_id AT1G31250.1  protein_id AT1G31250.1p  transcript_id AT1G31250.1  
At1g31258	chr1:011171225	0.0	W/11171225-11171835	AT1G31258.1 ncRNA  function Unknown gene  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G31258.1  
At1g31260	chr1:011175559	0.0	C/11175559-11175864,11176082-11176231,11176724-11177362	AT1G31260.1 CDS  gene_syn T19E23.6, T19E23_6, ZINC TRANSPORTER 10 PRECURSOR, ZIP10  gene ZIP10  function member of Fe(II) transporter isolog family  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process cation transport|GO:0006812|11500563|ISS  go_process cation transport|GO:0006812||ISS  go_function cation transmembrane transporter activity|GO:0008324|11500563|ISS  go_function cation transmembrane transporter activity|GO:0008324||ISS  go_function metal ion transmembrane transporter activity|GO:0046873||ISS  product ZIP10 (ZINC TRANSPORTER 10 PRECURSOR); cation transmembrane transporter/ metal ion transmembrane transporter  note ZINC TRANSPORTER 10 PRECURSOR (ZIP10); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal and plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: IRT1 (iron-regulated transporter 1); cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter (TAIR:AT4G19690.2); Has 1230 Blast hits to 1137 proteins in 192 species: Archae - 0; Bacteria - 72; Metazoa - 306; Fungi - 396; Plants - 307; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).  protein_id AT1G31260.1p  transcript_id AT1G31260.1  protein_id AT1G31260.1p  transcript_id AT1G31260.1  
At1g31270	chr1:011178349	0.0	W/11178349-11178429,11178467-11178658	AT1G31270.1 CDS  gene_syn T19E23.20  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G31270.1p  transcript_id AT1G31270.1  protein_id AT1G31270.1p  transcript_id AT1G31270.1  
At1g31274	chr1:011179998	0.0	C/11179998-11180462	AT1G31274.1 pseudogenic_transcript  pseudo  function Pseudogene of AT5G26622; beta-galactosidase  
At1g31280	chr1:011181777	0.0	W/11181777-11182197,11182404-11183559,11183645-11185112	AT1G31280.1 CDS  gene_syn AGO2, T19E23.7, T19E23_7, argonaute 2  gene AGO2  function An Argonaute gene  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product AGO2 (argonaute 2); nucleic acid binding  note argonaute 2 (AGO2); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: PAZ domain-containing protein / piwi domain-containing protein (TAIR:AT1G31290.1); Has 28109 Blast hits to 12738 proteins in 935 species: Archae - 11; Bacteria - 6700; Metazoa - 9915; Fungi - 2467; Plants - 4849; Viruses - 319; Other Eukaryotes - 3848 (source: NCBI BLink).  protein_id AT1G31280.1p  transcript_id AT1G31280.1  protein_id AT1G31280.1p  transcript_id AT1G31280.1  
At1g31290	chr1:011188293	0.0	W/11188293-11189241,11189603-11190752,11190832-11192317	AT1G31290.1 CDS  gene_syn T19E23.8, T19E23_8  go_function nucleic acid binding|GO:0003676||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product PAZ domain-containing protein / piwi domain-containing protein  note PAZ domain-containing protein / piwi domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute and Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, Ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: AGO2 (argonaute 2); nucleic acid binding (TAIR:AT1G31280.1); Has 78384 Blast hits to 27538 proteins in 1433 species: Archae - 100; Bacteria - 20452; Metazoa - 26641; Fungi - 5982; Plants - 9809; Viruses - 1132; Other Eukaryotes - 14268 (source: NCBI BLink).  protein_id AT1G31290.1p  transcript_id AT1G31290.1  protein_id AT1G31290.1p  transcript_id AT1G31290.1  
At1g31300	chr1:011194308	0.0	W/11194308-11194448,11194540-11194628,11194719-11194857,11194946-11195020,11195229-11195350,11195449-11195524,11195611-11195670,11195821-11195955	AT1G31300.1 CDS  gene_syn T19E23.9, T19E23_9  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G31300.1p  transcript_id AT1G31300.1  protein_id AT1G31300.1p  transcript_id AT1G31300.1  
At1g31300	chr1:011194308	0.0	W/11194308-11194448,11194540-11194628,11194719-11194857,11194946-11195020,11195229-11195350,11195449-11195524,11195611-11195670,11195821-11195955	AT1G31300.2 CDS  gene_syn T19E23.9, T19E23_9  go_component integral to membrane|GO:0016021||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).  protein_id AT1G31300.2p  transcript_id AT1G31300.2  protein_id AT1G31300.2p  transcript_id AT1G31300.2  
At1g31310	chr1:011198565	0.0	C/11198565-11198954,11199264-11200025	AT1G31310.1 CDS  gene_syn T19E23.10, T19E23_10  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function transcription factor activity|GO:0003700|11118137|ISS  product hydroxyproline-rich glycoprotein family protein  note hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT2G35640.1); Has 2614 Blast hits to 2265 proteins in 267 species: Archae - 8; Bacteria - 321; Metazoa - 1040; Fungi - 255; Plants - 532; Viruses - 119; Other Eukaryotes - 339 (source: NCBI BLink).  protein_id AT1G31310.1p  transcript_id AT1G31310.1  protein_id AT1G31310.1p  transcript_id AT1G31310.1  
At1g31319	chr1:011211807	0.0	C/11211807-11211914	AT1G31319.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G31319.1p  transcript_id AT1G31319.1  protein_id AT1G31319.1p  transcript_id AT1G31319.1  
At1g31320	chr1:011213107	0.0	W/11213107-11213283,11213691-11214032	AT1G31320.1 CDS  gene_syn LBD4, LOB DOMAIN-CONTAINING PROTEIN 4, T19E23.11, T19E23_11  gene LBD4  go_process biological_process|GO:0008150||ND  product LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)  note LOB DOMAIN-CONTAINING PROTEIN 4 (LBD4); INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASL5; DNA binding / protein binding (TAIR:AT2G30130.1); Has 595 Blast hits to 592 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 595; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31320.1p  transcript_id AT1G31320.1  protein_id AT1G31320.1p  transcript_id AT1G31320.1  
At1g31330	chr1:011215011	0.0	C/11215011-11215320,11215584-11215939	AT1G31330.1 CDS  gene_syn PSAF, PSI-F, T19E23.12, T19E23_12, photosystem I subunit F  gene PSAF  function Encodes subunit F of photosystem I.  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|14729914|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component thylakoid|GO:0009579|18633119|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_process photosynthesis|GO:0015979||IEA  go_component photosystem I reaction center|GO:0009538||ISS  go_component plastoglobule|GO:0010287|16414959|IDA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process photosynthesis|GO:0015979||ISS  go_function molecular_function|GO:0003674||ND  product PSAF (photosystem I subunit F)  note photosystem I subunit F (PSAF); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre protein PsaF, subunit III (InterPro:IPR003666); Has 343 Blast hits to 343 proteins in 99 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 5; Other Eukaryotes - 157 (source: NCBI BLink).  protein_id AT1G31330.1p  transcript_id AT1G31330.1  protein_id AT1G31330.1p  transcript_id AT1G31330.1  
At1g31335	chr1:011217117	0.0	C/11217117-11217329	AT1G31335.1 CDS  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31335.1p  transcript_id AT1G31335.1  protein_id AT1G31335.1p  transcript_id AT1G31335.1  
At1g31340	chr1:011218076	0.0	C/11218076-11218193,11218661-11218920,11219325-11219417	AT1G31340.1 CDS  gene_syn ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, ATRUB1, NEDD8, RELATED TO UBIQUITIN 1, RUB1, T19E23.13, T19E23_13  gene RUB1  function Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response.  go_component plasma membrane|GO:0005886|17644812|IDA  go_process protein modification process|GO:0006464||ISS  go_process response to auxin stimulus|GO:0009733|9624055|TAS  go_process protein neddylation|GO:0045116|10322542|TAS  go_function protein binding|GO:0005515|9624055|IDA  product RUB1 (RELATED TO UBIQUITIN 1); protein binding  note RELATED TO UBIQUITIN 1 (RUB1); FUNCTIONS IN: protein binding; INVOLVED IN: response to auxin stimulus, protein modification process, protein neddylation; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: UBQ7; protein binding (TAIR:AT2G35635.1); Has 12093 Blast hits to 5555 proteins in 611 species: Archae - 0; Bacteria - 13; Metazoa - 5835; Fungi - 1251; Plants - 2253; Viruses - 307; Other Eukaryotes - 2434 (source: NCBI BLink).  protein_id AT1G31340.1p  transcript_id AT1G31340.1  protein_id AT1G31340.1p  transcript_id AT1G31340.1  
At1g31350	chr1:011221519	0.0	C/11221519-11222706	AT1G31350.1 CDS  gene_syn T19E23.14, T19E23_14  go_component cellular_component|GO:0005575||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT1G55270.1); Has 400 Blast hits to 400 proteins in 48 species: Archae - 0; Bacteria - 19; Metazoa - 76; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G31350.1p  transcript_id AT1G31350.1  protein_id AT1G31350.1p  transcript_id AT1G31350.1  
At1g31355	chr1:011228988	0.0	W/11228988-11229990	AT1G31355.1 pseudogenic_transcript  pseudo  gene_syn T19E23.15  note 60S ribosomal protein L21 (RPL21D), pseudogene, similar to 60s ribosomal protein L21 GB:Q43291 from (Arabidopsis thaliana); blastp match of 74% identity and 3.6e-50 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S ribosomal protein L21 {Oryza sativa}  
At1g31358	chr1:011230463	0.0	C/11230463-11230612	AT1G31358.1 miRNA  gene_syn MICRORNA404, MIR404  gene MIR404  function Encodes a microRNA. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence:ATTAACGCTGGCGGTTGCGGCAGC  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product MIR404 (MICRORNA404); miRNA  transcript_id AT1G31358.1  
At1g31360	chr1:011232422	0.0	W/11232422-11232485,11232756-11232979,11233087-11233233,11233361-11233576,11233732-11233836,11234096-11234200,11234292-11234414,11234542-11234630,11234788-11234824,11234914-11234947,11235182-11235234,11235309-11235386,11235483-11235548,11235787-11235853,11235947-11236000,11236211-11236318,11236406-11236470,11236645-11236723,11236927-11237129,11237212-11237412	AT1G31360.1 CDS  gene_syn ARABIDOPSIS RECQ HELICASE L2, ARABIDOPSIS THALIANA RECQ 2, ATRECQ2, RECQL2, T19E23.16, T19E23_16  gene RECQL2  function Encodes a (d)NTP-dependent 3 ->5  DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.  go_component nucleus|GO:0005634|18419780|IC  go_process DNA repair|GO:0006281|18419780|IC  go_process DNA recombination|GO:0006310|18419780|IC  go_function protein binding|GO:0005515|11058127|IPI  go_function ATP-dependent helicase activity|GO:0008026||ISS  go_function four-way junction helicase activity|GO:0009378|18419780|IDA  go_function 3 -5  DNA helicase activity|GO:0043138|18419780|IDA  product RECQL2 (ARABIDOPSIS RECQ HELICASE L2); 3 -5  DNA helicase/ ATP-dependent helicase/ four-way junction helicase/ protein binding  note ARABIDOPSIS RECQ HELICASE L2 (RECQL2); FUNCTIONS IN: four-way junction helicase activity, protein binding, 3 -5  DNA helicase activity, ATP-dependent helicase activity; INVOLVED IN: DNA repair, DNA recombination; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Helicase and RNase D C-terminal, HRDC (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G10930.1); Has 20353 Blast hits to 20301 proteins in 1646 species: Archae - 332; Bacteria - 10503; Metazoa - 2819; Fungi - 1727; Plants - 916; Viruses - 14; Other Eukaryotes - 4042 (source: NCBI BLink).  protein_id AT1G31360.1p  transcript_id AT1G31360.1  protein_id AT1G31360.1p  transcript_id AT1G31360.1  
At1g31360	chr1:011233174	0.0	W/11233174-11233233,11233361-11233576,11233732-11233836,11234096-11234200,11234292-11234414,11234542-11234630,11234788-11234824,11234914-11234947,11235182-11235234,11235309-11235386,11235483-11235548,11235787-11235853,11235947-11236000,11236211-11236318,11236406-11236470,11236645-11236723,11236927-11237129,11237212-11237412	AT1G31360.2 CDS  gene_syn ARABIDOPSIS RECQ HELICASE L2, ARABIDOPSIS THALIANA RECQ 2, ATRECQ2, RECQL2, T19E23.16, T19E23_16  gene RECQL2  function Encodes a (d)NTP-dependent 3 ->5  DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.  go_component nucleus|GO:0005634|18419780|IC  go_process DNA repair|GO:0006281|18419780|IC  go_process DNA recombination|GO:0006310|18419780|IC  go_function protein binding|GO:0005515|11058127|IPI  go_function ATP-dependent helicase activity|GO:0008026||ISS  go_function four-way junction helicase activity|GO:0009378|18419780|IDA  go_function 3 -5  DNA helicase activity|GO:0043138|18419780|IDA  product RECQL2 (ARABIDOPSIS RECQ HELICASE L2); 3 -5  DNA helicase/ ATP-dependent helicase/ four-way junction helicase/ protein binding  note ARABIDOPSIS RECQ HELICASE L2 (RECQL2); FUNCTIONS IN: four-way junction helicase activity, protein binding, 3 -5  DNA helicase activity, ATP-dependent helicase activity; INVOLVED IN: DNA repair, DNA recombination; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal region (InterPro:IPR018329), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021), Helicase and RNase D C-terminal, HRDC (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (TAIR:AT1G10930.1); Has 17363 Blast hits to 17320 proteins in 1598 species: Archae - 199; Bacteria - 9188; Metazoa - 2310; Fungi - 1308; Plants - 766; Viruses - 12; Other Eukaryotes - 3580 (source: NCBI BLink).  protein_id AT1G31360.2p  transcript_id AT1G31360.2  protein_id AT1G31360.2p  transcript_id AT1G31360.2  
At1g31370	chr1:011238298	0.0	C/11238298-11238516,11238658-11238861,11239205-11239363	AT1G31370.1 CDS  gene_syn T8E3.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G31390.1); Has 112 Blast hits to 101 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31370.1p  transcript_id AT1G31370.1  protein_id AT1G31370.1p  transcript_id AT1G31370.1  
At1g31380	chr1:011240451	0.0	C/11240451-11240801,11240923-11241099	AT1G31380.1 CDS  gene_syn T8E3.3  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G31390.1); Has 114 Blast hits to 103 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G31380.1p  transcript_id AT1G31380.1  protein_id AT1G31380.1p  transcript_id AT1G31380.1  
At1g31390	chr1:011243191	0.0	C/11243191-11243496,11243622-11243848,11244022-11244188,11244286-11244392	AT1G31390.1 CDS  gene_syn T8E3.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G31400.1); Has 638 Blast hits to 574 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 215; Fungi - 6; Plants - 375; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).  protein_id AT1G31390.1p  transcript_id AT1G31390.1  protein_id AT1G31390.1p  transcript_id AT1G31390.1  
At1g31400	chr1:011245225	0.0	C/11245225-11245569,11245708-11245925,11246110-11246276,11246375-11246481	AT1G31400.1 CDS  gene_syn T8E3.21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product meprin and TRAF homology domain-containing protein / MATH domain-containing protein  note meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT1G31390.1); Has 294 Blast hits to 253 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 283; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).  protein_id AT1G31400.1p  transcript_id AT1G31400.1  protein_id AT1G31400.1p  transcript_id AT1G31400.1  
At1g31410	chr1:011247094	0.0	C/11247094-11247537,11247654-11247815,11247951-11248133,11248222-11248356,11248520-11248768,11248864-11249003,11249084-11249345	AT1G31410.1 CDS  gene_syn T8E3.6, T8E3_6  go_component chloroplast|GO:0009507||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  product putrescine-binding periplasmic protein-related  note putrescine-binding periplasmic protein-related; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial periplasmic spermidine/putrescine-binding protein (InterPro:IPR001188); Has 2713 Blast hits to 2713 proteins in 808 species: Archae - 5; Bacteria - 2447; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).  protein_id AT1G31410.1p  transcript_id AT1G31410.1  protein_id AT1G31410.1p  transcript_id AT1G31410.1  
At1g31420	chr1:011250360	0.0	W/11250360-11250459,11250550-11250685,11250761-11250832,11250910-11250981,11251081-11251152,11251447-11251518,11251602-11251673,11251901-11251989,11252083-11252241,11252348-11252680,11252756-11253004,11253081-11253214,11253298-11253516	AT1G31420.1 CDS  gene_syn FEI 1, FEI1, FEI2, T8E3.2, T8E3_2  gene FEI1  function Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.  go_component endomembrane system|GO:0012505||IEA  go_process protein amino acid phosphorylation|GO:0006468||ISS  go_process transmembrane receptor protein tyrosine kinase signaling pathway|GO:0007169||ISS  go_process plant-type cell wall organization|GO:0009664|19017745|IMP  go_process unidimensional cell growth|GO:0009826|19017745|IMP  go_function protein serine/threonine kinase activity|GO:0004674||ISS  go_function ATP binding|GO:0005524||ISS  go_function kinase activity|GO:0016301|19017745|IMP  product FEI1 (FEI 1); ATP binding / kinase/ protein serine/threonine kinase  note FEI 1 (FEI1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation, plant-type cell wall organization, unidimensional cell growth; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: FEI2 (FEI 2); kinase (TAIR:AT2G35620.1); Has 119347 Blast hits to 91505 proteins in 3176 species: Archae - 82; Bacteria - 9193; Metazoa - 39672; Fungi - 6826; Plants - 46047; Viruses - 434; Other Eukaryotes - 17093 (source: NCBI BLink).  protein_id AT1G31420.1p  transcript_id AT1G31420.1  protein_id AT1G31420.1p  transcript_id AT1G31420.1  
At1g31430	chr1:011254025	0.0	C/11254025-11255737	AT1G31430.1 CDS  gene_syn T8E3.8, T8E3_8  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; EXPRESSED IN: shoot apex, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22410.1); Has 15300 Blast hits to 5108 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 52; Fungi - 42; Plants - 14949; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink).  protein_id AT1G31430.1p  transcript_id AT1G31430.1  protein_id AT1G31430.1p  transcript_id AT1G31430.1  
At1g31440	chr1:011256150	0.0	C/11256150-11256278,11256370-11256444,11256532-11256888,11256973-11257035,11257109-11257309,11257391-11257492,11257595-11257743,11257817-11257886,11257972-11258085,11258420-11258479	AT1G31440.1 CDS  gene_syn T8E3.10, T8E3_10  go_component plasma membrane|GO:0005886|17317660|IDA  go_component endomembrane system|GO:0012505|11701884|IDA  go_function clathrin binding|GO:0030276|11701884|IDA  product SH3 domain-containing protein 1 (SH3P1)  note SH3 domain-containing protein 1 (SH3P1); FUNCTIONS IN: clathrin binding; LOCATED IN: endomembrane system, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein 2 (SH3P2) (TAIR:AT4G34660.1); Has 2770 Blast hits to 2406 proteins in 226 species: Archae - 6; Bacteria - 195; Metazoa - 1545; Fungi - 132; Plants - 160; Viruses - 11; Other Eukaryotes - 721 (source: NCBI BLink).  protein_id AT1G31440.1p  transcript_id AT1G31440.1  protein_id AT1G31440.1p  transcript_id AT1G31440.1  
At1g31450	chr1:011259872	0.0	C/11259872-11261209	AT1G31450.1 CDS  gene_syn T8E3.12, T8E3_12  go_component endomembrane system|GO:0012505||IEA  go_process proteolysis|GO:0006508||IEA  go_function aspartic-type endopeptidase activity|GO:0004190||IEA  go_process proteolysis|GO:0006508||ISS  product aspartyl protease family protein  note aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: aspartyl protease family protein (TAIR:AT2G35615.1); Has 2212 Blast hits to 2197 proteins in 245 species: Archae - 0; Bacteria - 2; Metazoa - 535; Fungi - 379; Plants - 1156; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).  protein_id AT1G31450.1p  transcript_id AT1G31450.1  protein_id AT1G31450.1p  transcript_id AT1G31450.1  
At1g31460	chr1:011261705	0.0	C/11261705-11262610	AT1G31460.1 CDS  gene_syn T8E3.13, T8E3_13  go_component plasma membrane|GO:0005886|17317660|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23270.1); Has 1177 Blast hits to 701 proteins in 148 species: Archae - 0; Bacteria - 210; Metazoa - 433; Fungi - 158; Plants - 37; Viruses - 17; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G31460.1p  transcript_id AT1G31460.1  protein_id AT1G31460.1p  transcript_id AT1G31460.1  
At1g31470	chr1:011262937	0.0	C/11262937-11263432,11263514-11264349,11264528-11264944	AT1G31470.1 CDS  gene_syn NFD4, NUCLEAR FUSION DEFECTIVE 4, T8E3.15, T8E3_15  gene NFD4  go_component mitochondrion|GO:0005739|16698901|RCA  go_process response to salt stress|GO:0009651|17411438|IMP  product NFD4 (NUCLEAR FUSION DEFECTIVE 4)  note NUCLEAR FUSION DEFECTIVE 4 (NFD4); INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45275.1); Has 739 Blast hits to 706 proteins in 201 species: Archae - 15; Bacteria - 203; Metazoa - 7; Fungi - 137; Plants - 313; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).  protein_id AT1G31470.1p  transcript_id AT1G31470.1  protein_id AT1G31470.1p  transcript_id AT1G31470.1  
At1g31480	chr1:011266225	0.0	W/11266225-11266432,11266552-11266652,11266792-11266974,11267093-11267248,11267455-11267526,11267616-11267768,11267924-11267974,11268101-11268271,11268366-11268515,11268707-11268772,11268866-11269387,11269590-11269653,11269760-11269878,11269970-11270042,11270201-11270303,11270412-11270505,11270582-11270644,11270755-11270803,11270886-11270989,11271149-11271195,11271275-11271527	AT1G31480.1 CDS  gene_syn SGR2, SHOOT GRAVITROPISM 2, T8E3.1, T8E3_1  gene SGR2  function encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole.  go_component vacuole|GO:0005773|14760709|IDA  go_component plant-type vacuole membrane|GO:0009705|11826298|IDA  go_process detection of gravity|GO:0009590|16344262|IMP  go_process gravitropism|GO:0009630|11826297|IMP  go_process amyloplast organization|GO:0009660|11826298|IMP  go_process negative gravitropism|GO:0009959|11826297|IMP  go_function phospholipase A1 activity|GO:0008970|11826298|ISS  product SGR2 (SHOOT GRAVITROPISM 2); phospholipase A1  note SHOOT GRAVITROPISM 2 (SGR2); FUNCTIONS IN: phospholipase A1 activity; INVOLVED IN: gravitropism, negative gravitropism, detection of gravity, amyloplast organization; LOCATED IN: plant-type vacuole membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDHD (InterPro:IPR004177); Has 902 Blast hits to 585 proteins in 130 species: Archae - 0; Bacteria - 1; Metazoa - 543; Fungi - 252; Plants - 22; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).  protein_id AT1G31480.1p  transcript_id AT1G31480.1  protein_id AT1G31480.1p  transcript_id AT1G31480.1  
At1g31485	chr1:011271744	0.0	W/11271744-11273075	AT1G31485.1 ncRNA  function Potential natural antisense gene, locus overlaps with AT1G31490  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G31485.1  
At1g31490	chr1:011271744	0.0	C/11271744-11273078	AT1G31490.1 CDS  gene_syn F27M3.28, F27M3_28  go_component chloroplast|GO:0009507|15028209|IDA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function transferase activity, transferring acyl groups other than amino-acyl groups|GO:0016747||IEA  go_function quinone binding|GO:0048038||IEA  go_function transferase activity|GO:0016740||ISS  product transferase family protein  note transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity; INVOLVED IN: cellular amine metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: transferase family protein (TAIR:AT1G78990.1); Has 1188 Blast hits to 1186 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 32; Plants - 1156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31490.1p  transcript_id AT1G31490.1  protein_id AT1G31490.1p  transcript_id AT1G31490.1  
At1g31500	chr1:011273821	0.0	C/11273821-11274126,11274236-11274383,11274461-11274596,11274741-11274853,11274941-11275065,11275282-11275351,11275680-11275729,11275917-11275957,11276060-11276147	AT1G31500.2 CDS  gene_syn F27M3.27, F27M3_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G31530.1); Has 896 Blast hits to 882 proteins in 149 species: Archae - 0; Bacteria - 8; Metazoa - 439; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G31500.2p  transcript_id AT1G31500.2  protein_id AT1G31500.2p  transcript_id AT1G31500.2  
At1g31500	chr1:011273821	0.0	C/11273821-11274126,11274236-11274383,11274461-11274596,11274741-11274853,11274941-11275065,11275282-11275351,11275680-11275729,11275917-11275957,11276060-11276181,11276479-11276534	AT1G31500.1 CDS  gene_syn F27M3.27, F27M3_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G31530.1); Has 896 Blast hits to 882 proteins in 149 species: Archae - 0; Bacteria - 8; Metazoa - 439; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G31500.1p  transcript_id AT1G31500.1  protein_id AT1G31500.1p  transcript_id AT1G31500.1  
At1g31500	chr1:011273821	0.0	C/11273821-11274126,11274236-11274383,11274461-11274596,11274741-11274853,11274941-11275065,11275282-11275351,11275680-11275729,11275917-11276166,11276479-11276534	AT1G31500.4 CDS  gene_syn F27M3.27, F27M3_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G31530.1); Has 896 Blast hits to 882 proteins in 149 species: Archae - 0; Bacteria - 8; Metazoa - 439; Fungi - 175; Plants - 131; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G31500.4p  transcript_id AT1G31500.4  protein_id AT1G31500.4p  transcript_id AT1G31500.4  
At1g31500	chr1:011274230	0.0	C/11274230-11274383,11274461-11274596,11274741-11274853,11274941-11275065,11275282-11275351,11275680-11275729,11275917-11275957,11276060-11276166,11276479-11276534	AT1G31500.3 CDS  gene_syn F27M3.27, F27M3_27  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G31530.1); Has 854 Blast hits to 849 proteins in 147 species: Archae - 0; Bacteria - 4; Metazoa - 431; Fungi - 171; Plants - 124; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).  protein_id AT1G31500.3p  transcript_id AT1G31500.3  protein_id AT1G31500.3p  transcript_id AT1G31500.3  
At1g31510	chr1:011277417	0.0	W/11277417-11278104,11278149-11278208,11278281-11278462	AT1G31510.1 CDS  gene_syn F27M3.26, F27M3_26  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein-related  note F-box family protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G11620.1); Has 393 Blast hits to 391 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31510.1p  transcript_id AT1G31510.1  protein_id AT1G31510.1p  transcript_id AT1G31510.1  
At1g31520	chr1:011278983	0.0	C/11278983-11279229,11279346-11279438,11279581-11279639	AT1G31520.1 CDS  gene_syn F27M3.25, F27M3_25  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31520.1p  transcript_id AT1G31520.1  protein_id AT1G31520.1p  transcript_id AT1G31520.1  
At1g31530	chr1:011281188	0.0	C/11281188-11281454,11281532-11281676,11281781-11281987,11282099-11282214,11282311-11282380,11282422-11282468	AT1G31530.1 CDS  gene_syn F27M3.24, F27M3_24  go_component cellular_component|GO:0005575||ND  go_function hydrolase activity|GO:0016787||ISS  product endonuclease/exonuclease/phosphatase family protein  note endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: endonuclease/exonuclease/phosphatase family protein (TAIR:AT1G31500.4); Has 713 Blast hits to 711 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 399; Fungi - 137; Plants - 99; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).  protein_id AT1G31530.1p  transcript_id AT1G31530.1  protein_id AT1G31530.1p  transcript_id AT1G31530.1  
At1g31540	chr1:011289244	0.0	C/11289244-11289261,11289346-11290527,11291096-11291506,11291617-11291913,11292041-11293157,11293237-11293697	AT1G31540.2 CDS  gene_syn T8E3.20, T8E3_20  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat 3 (InterPro:IPR011713), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G46260.1); Has 13306 Blast hits to 9332 proteins in 389 species: Archae - 14; Bacteria - 484; Metazoa - 987; Fungi - 57; Plants - 11164; Viruses - 17; Other Eukaryotes - 583 (source: NCBI BLink).  protein_id AT1G31540.2p  transcript_id AT1G31540.2  protein_id AT1G31540.2p  transcript_id AT1G31540.2  
At1g31540	chr1:011291051	0.0	C/11291051-11291506,11291617-11291913,11292041-11293157,11293237-11293697	AT1G31540.1 CDS  gene_syn T8E3.20, T8E3_20  go_component intrinsic to membrane|GO:0031224||IEA  go_process apoptosis|GO:0006915||IEA  go_process signal transduction|GO:0007165||IEA  go_process innate immune response|GO:0045087||IEA  go_function nucleotide binding|GO:0000166||IEA  go_function transmembrane receptor activity|GO:0004888||IEA  go_function ATP binding|GO:0005524||IEA  go_function nucleoside-triphosphatase activity|GO:0017111||IEA  go_process defense response|GO:0006952||ISS  product disease resistance protein (TIR-NBS-LRR class), putative  note disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Leucine-rich repeat 3 (InterPro:IPR011713); BEST Arabidopsis thaliana protein match is: ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor (TAIR:AT5G46270.1); Has 11218 Blast hits to 8480 proteins in 336 species: Archae - 10; Bacteria - 305; Metazoa - 510; Fungi - 24; Plants - 10109; Viruses - 12; Other Eukaryotes - 248 (source: NCBI BLink).  protein_id AT1G31540.1p  transcript_id AT1G31540.1  protein_id AT1G31540.1p  transcript_id AT1G31540.1  
At1g31550	chr1:011295635	0.0	C/11295635-11295912,11295991-11296267,11296361-11296509,11296596-11296808,11297017-11297284	AT1G31550.2 CDS  gene_syn T8E3.19, T8E3_19  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT1G28600.1); Has 1801 Blast hits to 1768 proteins in 140 species: Archae - 0; Bacteria - 216; Metazoa - 1; Fungi - 2; Plants - 1579; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G31550.2p  transcript_id AT1G31550.2  protein_id AT1G31550.2p  transcript_id AT1G31550.2  
At1g31550	chr1:011295635	0.0	C/11295635-11295912,11296000-11296267,11296361-11296509,11296596-11296808,11297017-11297284	AT1G31550.1 CDS  gene_syn T8E3.19, T8E3_19  go_component vacuole|GO:0005773|15539469|IDA  go_process lipid metabolic process|GO:0006629||IEA  go_function hydrolase activity, acting on ester bonds|GO:0016788||IEA  go_function carboxylesterase activity|GO:0004091||ISS  go_function lipase activity|GO:0016298||ISS  product GDSL-motif lipase, putative  note GDSL-motif lipase, putative; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: lipase, putative (TAIR:AT1G28600.1); Has 1660 Blast hits to 1632 proteins in 107 species: Archae - 0; Bacteria - 124; Metazoa - 1; Fungi - 2; Plants - 1531; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G31550.1p  transcript_id AT1G31550.1  protein_id AT1G31550.1p  transcript_id AT1G31550.1  
At1g31570	chr1:011302782	0.0	C/11302782-11309164	AT1G31570.1 mRNA_TE_gene  pseudo  gene_syn T8E3.18  note Transposable element gene, CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative; 12762-16371 (Arabidopsis thaliana) (CACTA-element)  
At1g31580	chr1:011311300	0.0	W/11311300-11311405,11311531-11311712	AT1G31580.1 CDS  gene_syn CXC750, ECS1, F27M3.20, F27M3_20  gene ECS1  function Encodes cell wall protein. ECS1 is not a Xcc750 resistance gene, but the genetic data indicate that ECS1 is linked to a locus influencing resistance to Xcc750.  go_component cell wall|GO:0005618|9869403|IDA  go_process defense response|GO:0006952|8018872|IEP  go_function molecular_function|GO:0003674||ND  product ECS1  note ECS1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 12 Blast hits to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31580.1p  transcript_id AT1G31580.1  protein_id AT1G31580.1p  transcript_id AT1G31580.1  
At1g31600	chr1:011313376	0.0	C/11313376-11313438,11313509-11313574,11313672-11313944,11314034-11314249,11314342-11314437,11314624-11314944	AT1G31600.2 CDS  gene_syn AT1G31610, F27M3.19, F27M3_19  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02485.1); Has 463 Blast hits to 463 proteins in 127 species: Archae - 0; Bacteria - 53; Metazoa - 223; Fungi - 51; Plants - 56; Viruses - 3; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G31600.2p  transcript_id AT1G31600.2  protein_id AT1G31600.2p  transcript_id AT1G31600.2  
At1g31600	chr1:011313376	0.0	C/11313376-11313438,11313509-11313574,11313672-11313944,11314034-11314249,11314342-11314443,11314624-11315199	AT1G31600.1 CDS  gene_syn AT1G31610, F27M3.19, F27M3_19  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02485.1); Has 480 Blast hits to 480 proteins in 127 species: Archae - 0; Bacteria - 53; Metazoa - 222; Fungi - 51; Plants - 74; Viruses - 3; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G31600.1p  transcript_id AT1G31600.1  protein_id AT1G31600.1p  transcript_id AT1G31600.1  
At1g31600	chr1:011313376	0.0	C/11313376-11313438,11313509-11313574,11313672-11313944,11314034-11314249,11314342-11314443,11314624-11315199	AT1G31600.3 CDS  gene_syn AT1G31610, F27M3.19, F27M3_19  go_function nucleic acid binding|GO:0003676||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function nucleic acid binding|GO:0003676||ISS  product oxidoreductase, 2OG-Fe(II) oxygenase family protein  note oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02485.1); Has 480 Blast hits to 480 proteins in 127 species: Archae - 0; Bacteria - 53; Metazoa - 222; Fungi - 51; Plants - 74; Viruses - 3; Other Eukaryotes - 77 (source: NCBI BLink).  protein_id AT1G31600.3p  transcript_id AT1G31600.3  protein_id AT1G31600.3p  transcript_id AT1G31600.3  
At1g31620	chr1:011316941	0.0	W/11316941-11317007,11317169-11317262,11317456-11317552,11317817-11317894	AT1G31620.1 CDS  gene_syn F27M3.18, F27M3_18  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31620.1p  transcript_id AT1G31620.1  protein_id AT1G31620.1p  transcript_id AT1G31620.1  
At1g31630	chr1:011318528	0.0	C/11318528-11319547	AT1G31630.1 CDS  gene_syn AGAMOUS-LIKE 86, AGL86, F27M3.17, F27M3_17  gene AGL86  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL86 (AGAMOUS-LIKE 86); DNA binding / transcription factor  note AGAMOUS-LIKE 86 (AGL86); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL92 (AGAMOUS-LIKE 92); DNA binding / transcription factor (TAIR:AT1G31640.1); Has 2897 Blast hits to 2601 proteins in 360 species: Archae - 0; Bacteria - 44; Metazoa - 497; Fungi - 46; Plants - 2146; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).  protein_id AT1G31630.1p  transcript_id AT1G31630.1  protein_id AT1G31630.1p  transcript_id AT1G31630.1  
At1g31640	chr1:011322692	0.0	C/11322692-11322828,11322919-11324176	AT1G31640.1 CDS  gene_syn AGAMOUS-LIKE 92, AGL92, F27M3.16, F27M3_16  gene AGL92  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|12837945|ISS  product AGL92 (AGAMOUS-LIKE 92); DNA binding / transcription factor  note AGAMOUS-LIKE 92 (AGL92); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGL86 (AGAMOUS-LIKE 86); DNA binding / transcription factor (TAIR:AT1G31630.1); Has 1811 Blast hits to 1790 proteins in 259 species: Archae - 0; Bacteria - 2; Metazoa - 397; Fungi - 17; Plants - 1252; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).  protein_id AT1G31640.1p  transcript_id AT1G31640.1  protein_id AT1G31640.1p  transcript_id AT1G31640.1  
At1g31650	chr1:011326474	0.0	C/11326474-11326830,11326903-11327253,11327330-11327599,11327686-11327760,11327835-11327989,11328093-11328533,11329686-11329767	AT1G31650.1 CDS  gene_syn ATROPGEF14, F27M3.15, F27M3_15, ROPGEF14  gene ROPGEF14  function Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.  go_process biological_process|GO:0008150||ND  go_function Rho guanyl-nucleotide exchange factor activity|GO:0005089|15980860|ISS  product ROPGEF14; Rho guanyl-nucleotide exchange factor  note ROPGEF14; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROPGEF7; Rho guanyl-nucleotide exchange factor (TAIR:AT5G02010.1); Has 167 Blast hits to 167 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31650.1p  transcript_id AT1G31650.1  protein_id AT1G31650.1p  transcript_id AT1G31650.1  
At1g31660	chr1:011331176	0.0	C/11331176-11331240,11331348-11331423,11331510-11331582,11331676-11331822,11331936-11331983,11332075-11332154,11332245-11332572,11332648-11332699,11332779-11332905,11333027-11333248,11333324-11333440	AT1G31660.1 CDS  gene_syn F27M3.14, F27M3_14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 370 Blast hits to 362 proteins in 156 species: Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).  protein_id AT1G31660.1p  transcript_id AT1G31660.1  protein_id AT1G31660.1p  transcript_id AT1G31660.1  
At1g31670	chr1:011337558	0.0	W/11337558-11337825,11338816-11339564,11339727-11340116,11340228-11340332,11340751-11341000,11341043-11341298,11341682-11341889	AT1G31670.1 CDS  gene_syn F27M3.13, F27M3_13  go_component endomembrane system|GO:0012505||IEA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product copper amine oxidase, putative  note copper amine oxidase, putative; FUNCTIONS IN: quinone binding, amine oxidase activity, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: amine oxidase/ copper ion binding / quinone binding (TAIR:AT1G31690.1); Has 1082 Blast hits to 1079 proteins in 164 species: Archae - 4; Bacteria - 240; Metazoa - 217; Fungi - 287; Plants - 137; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).  protein_id AT1G31670.1p  transcript_id AT1G31670.1  protein_id AT1G31670.1p  transcript_id AT1G31670.1  
At1g31690	chr1:011343980	0.0	W/11343980-11344761,11345408-11345792,11345942-11346055,11346464-11347008,11347560-11347767	AT1G31690.1 CDS  gene_syn F27M3.11, F27M3_11  go_component endomembrane system|GO:0012505||IEA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product amine oxidase/ copper ion binding / quinone binding  note amine oxidase/ copper ion binding / quinone binding; FUNCTIONS IN: quinone binding, amine oxidase activity, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: copper amine oxidase, putative (TAIR:AT1G31710.1); Has 1097 Blast hits to 1095 proteins in 164 species: Archae - 4; Bacteria - 242; Metazoa - 220; Fungi - 296; Plants - 135; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G31690.1p  transcript_id AT1G31690.1  protein_id AT1G31690.1p  transcript_id AT1G31690.1  
At1g31710	chr1:011349855	0.0	W/11349855-11350645,11353283-11353667,11353760-11353873,11354463-11355010,11355132-11355339	AT1G31710.1 CDS  gene_syn F27M3.9, F27M3_9  go_component endomembrane system|GO:0012505||IEA  go_process cellular amine metabolic process|GO:0009308||IEA  go_function copper ion binding|GO:0005507||IEA  go_function amine oxidase activity|GO:0008131||IEA  go_function quinone binding|GO:0048038||IEA  go_function copper ion binding|GO:0005507||ISS  product copper amine oxidase, putative  note copper amine oxidase, putative; FUNCTIONS IN: amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: cellular amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal region (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: amine oxidase/ copper ion binding / quinone binding (TAIR:AT1G31690.1); Has 1084 Blast hits to 1082 proteins in 163 species: Archae - 4; Bacteria - 240; Metazoa - 219; Fungi - 285; Plants - 136; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).  protein_id AT1G31710.1p  transcript_id AT1G31710.1  protein_id AT1G31710.1p  transcript_id AT1G31710.1  
At1g31720	chr1:011356169	0.0	W/11356169-11356294,11356372-11356592,11356723-11356960	AT1G31720.1 CDS  gene_syn F27M3.8, F27M3_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, inflorescence meristem, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19370.1); Has 80 Blast hits to 80 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31720.1p  transcript_id AT1G31720.1  protein_id AT1G31720.1p  transcript_id AT1G31720.1  
At1g31730	chr1:011359907	0.0	W/11359907-11360695,11360777-11360992,11361075-11361185,11361284-11361481,11361574-11361705,11361941-11361997,11362081-11362197,11362567-11362644,11362727-11362870,11362942-11363916	AT1G31730.1 CDS  gene_syn F27M3.7, F27M3_7  go_component membrane coat|GO:0030117||IEA  go_process intracellular protein transport|GO:0006886||IEA  go_process vesicle-mediated transport|GO:0016192||IEA  go_function binding|GO:0005488||IEA  go_function protein binding|GO:0005515||IEA  go_function clathrin binding|GO:0030276||ISS  product epsilon-adaptin, putative  note epsilon-adaptin, putative; FUNCTIONS IN: protein binding, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Adaptor protein complex AP-4, epsilon subunit (InterPro:IPR017109), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (TAIR:AT1G23900.2); Has 4111 Blast hits to 2632 proteins in 228 species: Archae - 0; Bacteria - 67; Metazoa - 1478; Fungi - 596; Plants - 220; Viruses - 3; Other Eukaryotes - 1747 (source: NCBI BLink).  protein_id AT1G31730.1p  transcript_id AT1G31730.1  protein_id AT1G31730.1p  transcript_id AT1G31730.1  
At1g31740	chr1:011365285	0.0	C/11365285-11365637,11365889-11366005,11366140-11366320,11366399-11366508,11366595-11366895,11367003-11367164,11367251-11367369,11367454-11367541,11367635-11367740,11367902-11367990,11368079-11368222,11368385-11368477,11368563-11368629,11369377-11369585,11369687-11369908	AT1G31740.1 CDS  gene_syn BGAL15, beta-galactosidase 15  gene BGAL15  function Encodes a putative &beta;-galactosidase.  go_component beta-galactosidase complex|GO:0009341||IEA  go_component endomembrane system|GO:0012505||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_function beta-galactosidase activity|GO:0004565|15517348|TAS  go_function beta-galactosidase activity|GO:0004565||ISS  product BGAL15 (beta-galactosidase 15); beta-galactosidase  note beta-galactosidase 15 (BGAL15); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, beta-galactosidase complex; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Galactose-binding like (InterPro:IPR008979), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: BGAL7 (beta-galactosidase 7); beta-galactosidase (TAIR:AT5G20710.1); Has 1221 Blast hits to 1181 proteins in 250 species: Archae - 11; Bacteria - 332; Metazoa - 320; Fungi - 120; Plants - 379; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).  protein_id AT1G31740.1p  transcript_id AT1G31740.1  protein_id AT1G31740.1p  transcript_id AT1G31740.1  
At1g31750	chr1:011370809	0.0	C/11370809-11371098,11371791-11372031	AT1G31750.1 CDS  gene_syn F5M6.24  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product proline-rich family protein  note proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; Has 28504 Blast hits to 13839 proteins in 758 species: Archae - 8; Bacteria - 3021; Metazoa - 12889; Fungi - 3156; Plants - 5337; Viruses - 840; Other Eukaryotes - 3253 (source: NCBI BLink).  protein_id AT1G31750.1p  transcript_id AT1G31750.1  protein_id AT1G31750.1p  transcript_id AT1G31750.1  
At1g31760	chr1:011372602	0.0	C/11372602-11372727,11373202-11373414	AT1G31760.1 CDS  gene_syn F5M6.23  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product SWIB complex BAF60b domain-containing protein  note SWIB complex BAF60b domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT2G35605.1); Has 610 Blast hits to 576 proteins in 146 species: Archae - 0; Bacteria - 132; Metazoa - 43; Fungi - 118; Plants - 189; Viruses - 6; Other Eukaryotes - 122 (source: NCBI BLink).  protein_id AT1G31760.1p  transcript_id AT1G31760.1  protein_id AT1G31760.1p  transcript_id AT1G31760.1  
At1g31770	chr1:011375252	0.0	C/11375252-11375902,11375996-11376183,11376279-11376434,11376519-11377308,11377483-11377644	AT1G31770.1 CDS  gene_syn F5M6.22  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_function ATPase activity, coupled to transmembrane movement of substances|GO:0042626||ISS  product ABC transporter family protein  note ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 (InterPro:IPR000412), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT4G27420.1); Has 231605 Blast hits to 212262 proteins in 2642 species: Archae - 4250; Bacteria - 159285; Metazoa - 7487; Fungi - 4430; Plants - 2737; Viruses - 7; Other Eukaryotes - 53409 (source: NCBI BLink).  protein_id AT1G31770.1p  transcript_id AT1G31770.1  protein_id AT1G31770.1p  transcript_id AT1G31770.1  
At1g31772	chr1:011378940	0.0	W/11378940-11378999,11379172-11379414	AT1G31772.1 CDS  function Encodes a defensin-like (DEFL) family protein.  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G31772.1p  transcript_id AT1G31772.1  protein_id AT1G31772.1p  transcript_id AT1G31772.1  
At1g31780	chr1:011391341	0.0	W/11391341-11391763,11391846-11391953,11392058-11392125,11392554-11392677,11392785-11392931,11393139-11393393,11393502-11393786,11393879-11394013,11394113-11394610	AT1G31780.1 CDS  gene_syn F5M6.21, F5M6_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 281 Blast hits to 279 proteins in 131 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 106; Plants - 21; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).  protein_id AT1G31780.1p  transcript_id AT1G31780.1  protein_id AT1G31780.1p  transcript_id AT1G31780.1  
At1g31790	chr1:011394744	0.0	C/11394744-11395973	AT1G31790.1 CDS  gene_syn F5M6.20, F5M6_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24000.1); Has 7816 Blast hits to 2592 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7810; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).  protein_id AT1G31790.1p  transcript_id AT1G31790.1  protein_id AT1G31790.1p  transcript_id AT1G31790.1  
At1g31800	chr1:011396440	0.0	W/11396440-11396672,11396792-11397008,11397106-11397177,11397271-11397381,11397470-11397661,11397760-11397921,11397995-11398090,11398165-11398266,11398347-11398379,11398456-11398536,11398615-11398697,11398779-11398910,11398982-11399042,11399128-11399193,11399324-11399470	AT1G31800.1 CDS  gene_syn CYP97A3, CYTOCHROME P450-TYPE MONOOXYGENASE 97A3, F5M6.19, F5M6_19, LUT5, LUTEIN DEFICIENT 5  gene CYP97A3  function Encodes a protein with & 946;-ring carotenoid hydroxylase activity.  go_component chloroplast|GO:0009507|18431481|IDA  go_process carotenoid biosynthetic process|GO:0016117|16492736|IMP  go_process xanthophyll biosynthetic process|GO:0016123|16890225|IGI  go_function carotene beta-ring hydroxylase activity|GO:0010291|16492736|IMP  go_function oxygen binding|GO:0019825||ISS  product CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding  note CYTOCHROME P450-TYPE MONOOXYGENASE 97A3 (CYP97A3); FUNCTIONS IN: carotene beta-ring hydroxylase activity, oxygen binding; INVOLVED IN: carotenoid biosynthetic process, xanthophyll biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, C-terminal region (InterPro:IPR017973), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: LUT1 (LUTEIN DEFICIENT 1); epsilon hydroxylase/ oxygen binding (TAIR:AT3G53130.1); Has 23486 Blast hits to 23368 proteins in 1244 species: Archae - 35; Bacteria - 2427; Metazoa - 10280; Fungi - 4519; Plants - 5162; Viruses - 3; Other Eukaryotes - 1060 (source: NCBI BLink).  protein_id AT1G31800.1p  transcript_id AT1G31800.1  protein_id AT1G31800.1p  transcript_id AT1G31800.1  
At1g31810	chr1:011399922	0.0	C/11399922-11400106,11400201-11400267,11400365-11400433,11400560-11400676,11400761-11400832,11400965-11401059,11401132-11401213,11401293-11401343,11401427-11401507,11401586-11401627,11401822-11401920,11402140-11402211,11402534-11402654,11402850-11404390,11404574-11404795,11404888-11405591,11405689-11405761	AT1G31810.1 CDS  gene_syn F5M6.18, F5M6_18  go_process cellular component organization|GO:0016043||IEA  go_process actin cytoskeleton organization|GO:0030036||IEA  go_function actin binding|GO:0003779|12417149|ISS  go_function actin binding|GO:0003779|15256004|ISS  go_function actin binding|GO:0003779||ISS  product actin binding  note actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatase tensin type (InterPro:IPR014019), Actin-binding FH2 and DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973), Actin-binding FH2 (InterPro:IPR015425), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: formin homology 2 domain-containing protein / FH2 domain-containing protein (TAIR:AT2G25050.1); Has 10825 Blast hits to 10134 proteins in 624 species: Archae - 8; Bacteria - 1361; Metazoa - 5689; Fungi - 1446; Plants - 921; Viruses - 306; Other Eukaryotes - 1094 (source: NCBI BLink).  protein_id AT1G31810.1p  transcript_id AT1G31810.1  protein_id AT1G31810.1p  transcript_id AT1G31810.1  
At1g31812	chr1:011411132	0.0	C/11411132-11411217,11411350-11411412,11411517-11411634,11412088-11412099	AT1G31812.1 CDS  gene_syn ACBP, ACBP6, ACYL-COA-BINDING PROTEIN, F5M6.27, F5M6_27, acyl-CoA-binding protein 6  gene ACBP6  function Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases.  go_component plasma membrane|GO:0005886|17317660|IDA  go_component cytosol|GO:0005829|18621979|IDA  go_component cytosol|GO:0005829|8660683|IDA  go_process lipid transport|GO:0006869|8660683|IDA  go_process response to cold|GO:0009409|18621979|IEP  go_process response to freezing|GO:0050826|18621979|IMP  go_function acyl-CoA binding|GO:0000062|8660683|IDA  go_function acyl-CoA binding|GO:0000062||ISS  go_function phosphatidylcholine binding|GO:0031210|18621979|IDA  product ACBP6 (acyl-CoA-binding protein 6); acyl-CoA binding / phosphatidylcholine binding  note acyl-CoA-binding protein 6 (ACBP6); FUNCTIONS IN: phosphatidylcholine binding, acyl-CoA binding; INVOLVED IN: response to freezing, response to cold, lipid transport; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: ACBP1 (ACYL-COA BINDING PROTEIN 1); acyl-CoA binding / lead ion binding (TAIR:AT5G53470.1); Has 1418 Blast hits to 1418 proteins in 304 species: Archae - 0; Bacteria - 216; Metazoa - 757; Fungi - 108; Plants - 146; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).  protein_id AT1G31812.1p  transcript_id AT1G31812.1  protein_id AT1G31812.1p  transcript_id AT1G31812.1  
At1g31814	chr1:011412985	0.0	C/11412985-11414406	AT1G31814.1 CDS  gene_syn F5M6.26, F5M6_26, FRIGIDA LIKE 2, FRL2  gene FRL2  function family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004885  go_process vegetative to reproductive phase transition|GO:0010228|14973192|IMP  go_function molecular_function|GO:0003674||ND  product FRL2 (FRIGIDA LIKE 2)  note FRIGIDA LIKE 2 (FRL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vegetative to reproductive phase transition; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRL1 (FRIGIDA LIKE 1) (TAIR:AT5G16320.1); Has 847 Blast hits to 821 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 830; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).  protein_id AT1G31814.1p  transcript_id AT1G31814.1  protein_id AT1G31814.1p  transcript_id AT1G31814.1  
At1g31817	chr1:011414932	0.0	C/11414932-11415764,11416245-11416356	AT1G31817.1 CDS  gene_syn F5M6.25, F5M6_25, NFD3, NUCLEAR FUSION DEFECTIVE 3  gene NFD3  go_component intracellular|GO:0005622||IEA  go_component ribosome|GO:0005840||IEA  go_process translation|GO:0006412||IEA  go_function structural constituent of ribosome|GO:0003735||IEA  go_component cytosolic small ribosomal subunit|GO:0022627||ISS  go_process translation|GO:0006412||ISS  go_function structural constituent of ribosome|GO:0003735||ISS  product NFD3 (NUCLEAR FUSION DEFECTIVE 3); structural constituent of ribosome  note NUCLEAR FUSION DEFECTIVE 3 (NFD3); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATCG00750.1); Has 5242 Blast hits to 5242 proteins in 1532 species: Archae - 8; Bacteria - 2826; Metazoa - 58; Fungi - 4; Plants - 484; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).  protein_id AT1G31817.1p  transcript_id AT1G31817.1  protein_id AT1G31817.1p  transcript_id AT1G31817.1  
At1g31820	chr1:011416691	0.0	C/11416691-11418139	AT1G31820.1 CDS  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product amino acid permease family protein  note amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: amino acid permease family protein (TAIR:AT1G31830.2); Has 12664 Blast hits to 12658 proteins in 1140 species: Archae - 203; Bacteria - 10285; Metazoa - 671; Fungi - 701; Plants - 214; Viruses - 0; Other Eukaryotes - 590 (source: NCBI BLink).  protein_id AT1G31820.1p  transcript_id AT1G31820.1  protein_id AT1G31820.1p  transcript_id AT1G31820.1  
At1g31830	chr1:011418875	0.0	C/11418875-11420314	AT1G31830.2 CDS  gene_syn F5M6.16, F5M6_16  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product amino acid permease family protein  note amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: amino acid permease family protein (TAIR:AT1G31820.1); Has 14356 Blast hits to 14351 proteins in 1181 species: Archae - 249; Bacteria - 11483; Metazoa - 903; Fungi - 726; Plants - 243; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink).  protein_id AT1G31830.2p  transcript_id AT1G31830.2  protein_id AT1G31830.2p  transcript_id AT1G31830.2  
At1g31830	chr1:011418875	0.0	C/11418875-11420362	AT1G31830.1 CDS  gene_syn F5M6.16, F5M6_16  go_component membrane|GO:0016020||IEA  go_process transport|GO:0006810||IEA  go_process amino acid transport|GO:0006865||IEA  go_function cationic amino acid transmembrane transporter activity|GO:0015326||ISS  product amino acid permease family protein  note amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease-associated region (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: amino acid permease family protein (TAIR:AT1G31820.1); Has 14358 Blast hits to 14353 proteins in 1181 species: Archae - 249; Bacteria - 11483; Metazoa - 903; Fungi - 728; Plants - 243; Viruses - 0; Other Eukaryotes - 752 (source: NCBI BLink).  protein_id AT1G31830.1p  transcript_id AT1G31830.1  protein_id AT1G31830.1p  transcript_id AT1G31830.1  
At1g31835	chr1:011423332	0.0	C/11423332-11423562	AT1G31835.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31835.1p  transcript_id AT1G31835.1  protein_id AT1G31835.1p  transcript_id AT1G31835.1  
At1g31840	chr1:011424006	0.0	W/11424006-11426528	AT1G31840.1 CDS  gene_syn F5M6.15, F5M6_15  go_component endomembrane system|GO:0012505||IEA  product unknown protein  note LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G22470.1); Has 23098 Blast hits to 5773 proteins in 180 species: Archae - 3; Bacteria - 16; Metazoa - 407; Fungi - 450; Plants - 21304; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink).  protein_id AT1G31840.1p  transcript_id AT1G31840.1  protein_id AT1G31840.1p  transcript_id AT1G31840.1  
At1g31850	chr1:011431165	0.0	W/11431165-11431443,11431527-11431871,11431953-11432163,11432253-11432931,11433009-11433086,11433224-11433443	AT1G31850.1 CDS  gene_syn F5M6.14, F5M6_14  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein, putative  note dehydration-responsive protein, putative; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: ERD3 (early-responsive to dehydration 3) (TAIR:AT4G19120.2); Has 539 Blast hits to 532 proteins in 52 species: Archae - 2; Bacteria - 50; Metazoa - 0; Fungi - 3; Plants - 476; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G31850.1p  transcript_id AT1G31850.1  protein_id AT1G31850.1p  transcript_id AT1G31850.1  
At1g31850	chr1:011431165	0.0	W/11431165-11431443,11431527-11431871,11431953-11432163,11432253-11432931,11433009-11433086,11433224-11433443	AT1G31850.2 CDS  gene_syn F5M6.14, F5M6_14  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein, putative  note dehydration-responsive protein, putative; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: ERD3 (early-responsive to dehydration 3) (TAIR:AT4G19120.2); Has 539 Blast hits to 532 proteins in 52 species: Archae - 2; Bacteria - 50; Metazoa - 0; Fungi - 3; Plants - 476; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G31850.2p  transcript_id AT1G31850.2  protein_id AT1G31850.2p  transcript_id AT1G31850.2  
At1g31850	chr1:011431165	0.0	W/11431165-11431443,11431527-11431871,11431953-11432163,11432253-11432931,11433009-11433086,11433224-11433443	AT1G31850.3 CDS  gene_syn F5M6.14, F5M6_14  go_component Golgi apparatus|GO:0005794|16618929|IDA  go_process biological_process|GO:0008150||ND  product dehydration-responsive protein, putative  note dehydration-responsive protein, putative; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: ERD3 (early-responsive to dehydration 3) (TAIR:AT4G19120.2); Has 539 Blast hits to 532 proteins in 52 species: Archae - 2; Bacteria - 50; Metazoa - 0; Fungi - 3; Plants - 476; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).  protein_id AT1G31850.3p  transcript_id AT1G31850.3  protein_id AT1G31850.3p  transcript_id AT1G31850.3  
At1g31860	chr1:011434250	0.0	C/11434250-11434448,11434525-11434676,11434771-11434866,11434943-11435188,11436378-11436530	AT1G31860.1 CDS  gene_syn AT-IE, F5M6.13, F5M6_13, HISN2, HISTIDINE BIOSYNTHESIS 2, PHOSPHORIBOSYL-ATP PYROPHOSPHOHYDROLASE  gene AT-IE  function encodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities.  go_component chloroplast|GO:0009507|18431481|IDA  go_process histidine biosynthetic process|GO:0000105|9733547|TAS  go_function phosphoribosyl-AMP cyclohydrolase activity|GO:0004635|9733547|IDA  go_function phosphoribosyl-ATP diphosphatase activity|GO:0004636|9733547|IDA  product AT-IE; phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP diphosphatase  note AT-IE; FUNCTIONS IN: phosphoribosyl-ATP diphosphatase activity, phosphoribosyl-AMP cyclohydrolase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyl-AMP cyclohydrolase (InterPro:IPR002496), Phosphoribosyl-ATP pyrophosphohydrolase (InterPro:IPR008179); Has 5745 Blast hits to 5745 proteins in 1220 species: Archae - 164; Bacteria - 2767; Metazoa - 2; Fungi - 128; Plants - 25; Viruses - 0; Other Eukaryotes - 2659 (source: NCBI BLink).  protein_id AT1G31860.1p  transcript_id AT1G31860.1  protein_id AT1G31860.1p  transcript_id AT1G31860.1  
At1g31870	chr1:011437269	0.0	W/11437269-11437464,11437584-11438496,11438774-11438841,11438930-11438994,11439090-11439193,11439283-11439355,11439456-11439636,11439736-11439821	AT1G31870.1 CDS  gene_syn F5M6.12, F5M6_12  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 11793 Blast hits to 8312 proteins in 386 species: Archae - 8; Bacteria - 320; Metazoa - 6710; Fungi - 1763; Plants - 711; Viruses - 126; Other Eukaryotes - 2155 (source: NCBI BLink).  protein_id AT1G31870.1p  transcript_id AT1G31870.1  protein_id AT1G31870.1p  transcript_id AT1G31870.1  
At1g31870	chr1:011437269	0.0	W/11437269-11437464,11437584-11438496,11438774-11438841,11438930-11438994,11439090-11439193,11439283-11439355,11439456-11439636,11439736-11439821	AT1G31870.2 CDS  gene_syn F5M6.12, F5M6_12  go_component nucleus|GO:0005634|18433157|IDA  go_component cytosol|GO:0005829|18433157|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 11793 Blast hits to 8312 proteins in 386 species: Archae - 8; Bacteria - 320; Metazoa - 6710; Fungi - 1763; Plants - 711; Viruses - 126; Other Eukaryotes - 2155 (source: NCBI BLink).  protein_id AT1G31870.2p  transcript_id AT1G31870.2  protein_id AT1G31870.2p  transcript_id AT1G31870.2  
At1g31875	chr1:011442913	0.0	C/11442913-11443044	AT1G31875.1 CDS  product unknown protein  note unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).  protein_id AT1G31875.1p  transcript_id AT1G31875.1  protein_id AT1G31875.1p  transcript_id AT1G31875.1  
At1g31880	chr1:011447804	0.0	W/11447804-11447917,11448826-11449217,11449315-11449444,11449547-11449866,11449975-11450053	AT1G31880.1 CDS  gene_syn BREVIS RADIX, BRX, F5M6.11, F5M6_11, NIP3;1, NLM9  gene BRX  function Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation. A loss-of-function allele, named brx-2 in Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth.  go_component nucleus|GO:0005634|15031265|IDA  go_process auxin mediated signaling pathway|GO:0009734|19037657|IMP  go_process cytokinin mediated signaling|GO:0009736|19037657|IMP  go_process response to abscisic acid stimulus|GO:0009737|19201913|IMP  go_process root development|GO:0048364|11500536|IMP  go_process lateral root development|GO:0048527|19037657|IMP  go_function water channel activity|GO:0015250||ISS  go_function identical protein binding|GO:0042802|16514016|IPI  product BRX (BREVIS RADIX); identical protein binding / water channel  note BREVIS RADIX (BRX); FUNCTIONS IN: water channel activity, identical protein binding; INVOLVED IN: auxin mediated signaling pathway, cytokinin mediated signaling, response to abscisic acid stimulus, root development, lateral root development; LOCATED IN: nucleus; EXPRESSED IN: shoot, flower, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BRXL1 (BREVIS RADIX LIKE 1) (TAIR:AT2G35600.1); Has 432 Blast hits to 241 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31880.1p  transcript_id AT1G31880.1  protein_id AT1G31880.1p  transcript_id AT1G31880.1  
At1g31885	chr1:011450460	0.0	W/11450460-11450591,11450831-11451055,11451292-11451572,11451652-11451985	AT1G31885.1 CDS  gene_syn F5M6.28, F5M6_28  go_component membrane|GO:0016020||IEA  go_component integral to membrane|GO:0016021||IEA  go_process transport|GO:0006810||IEA  go_function transporter activity|GO:0005215||IEA  go_component membrane|GO:0016020||ISS  go_process transport|GO:0006810||ISS  product transporter  note transporter; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NIP1;2 (NOD26-LIKE INTRINSIC PROTEIN 1;2); arsenite transmembrane transporter/ water channel (TAIR:AT4G18910.1); Has 6946 Blast hits to 6877 proteins in 1256 species: Archae - 77; Bacteria - 2734; Metazoa - 1165; Fungi - 289; Plants - 1404; Viruses - 4; Other Eukaryotes - 1273 (source: NCBI BLink).  protein_id AT1G31885.1p  transcript_id AT1G31885.1  protein_id AT1G31885.1p  transcript_id AT1G31885.1  
At1g31900	chr1:011457877	0.0	W/11457877-11458134	AT1G31900.1 pseudogenic_transcript  pseudo  gene_syn F5M6.29  function pseudogene of unknown protein  note pseudogene, expressed protein (fragment)  
At1g31910	chr1:011459050	0.0	W/11459050-11459057,11459160-11459310,11459425-11459522,11459686-11459792,11459886-11459938,11460065-11460442,11460518-11460622,11460742-11460969,11461060-11461182,11461383-11461649	AT1G31910.1 CDS  gene_syn F5M6.9, F5M6_9  go_process phosphorylation|GO:0016310||IEA  go_function ATP binding|GO:0005524||IEA  go_function kinase activity|GO:0016301||IEA  product GHMP kinase family protein  note GHMP kinase family protein; FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphomevalonate kinase, eukaryotic (InterPro:IPR005916), Phosphomevalonate kinase, ERG8 (InterPro:IPR016005), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 183 Blast hits to 174 proteins in 92 species: Archae - 8; Bacteria - 22; Metazoa - 0; Fungi - 96; Plants - 30; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).  protein_id AT1G31910.1p  transcript_id AT1G31910.1  protein_id AT1G31910.1p  transcript_id AT1G31910.1  
At1g31920	chr1:011461864	0.0	C/11461864-11463684	AT1G31920.1 CDS  gene_syn F5M6.8, F5M6_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G66520.1); Has 13708 Blast hits to 5114 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 70; Plants - 13274; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink).  protein_id AT1G31920.1p  transcript_id AT1G31920.1  protein_id AT1G31920.1p  transcript_id AT1G31920.1  
At1g31930	chr1:011465832	0.0	W/11465832-11466755,11466849-11466986,11467074-11467178,11467266-11467445,11467524-11467698,11467780-11468036,11468117-11468289,11468367-11468961	AT1G31930.1 CDS  gene_syn F5M6.7, F5M6_7, XLG3, extra-large GTP-binding protein 3  gene XLG3  function Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region. Involved in the regulation of root morphological and growth responses.  go_function signal transducer activity|GO:0004871||IEA  go_function guanyl nucleotide binding|GO:0019001||IEA  go_component nucleus|GO:0005634|17999646|IDA  go_process G-protein coupled receptor protein signaling pathway|GO:0007186||ISS  go_process gravitropism|GO:0009630|18397373|IGI  go_process thigmotropism|GO:0009652|18397373|IGI  go_process response to ethylene stimulus|GO:0009723|18397373|IMP  go_process response to abscisic acid stimulus|GO:0009737|17999646|IGI  go_process response to sucrose stimulus|GO:0009744|17999646|IGI  go_process response to glucose stimulus|GO:0009749|17999646|IGI  go_process response to fructose stimulus|GO:0009750|17999646|IGI  go_process root morphogenesis|GO:0010015|17999646|IGI  go_process response to mannitol stimulus|GO:0010555|17999646|IGI  go_process root development|GO:0048364|18397373|IGI  go_function signal transducer activity|GO:0004871||ISS  product XLG3 (extra-large GTP-binding protein 3); guanyl nucleotide binding / signal transducer  note extra-large GTP-binding protein 3 (XLG3); FUNCTIONS IN: guanyl nucleotide binding, signal transducer activity; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Guanine nucleotide binding protein (G-protein), alpha subunit (InterPro:IPR001019), G protein alpha subunit, helical insertion (InterPro:IPR011025); BEST Arabidopsis thaliana protein match is: XLG1 (EXTRA-LARGE G-PROTEIN 1); guanyl nucleotide binding / signal transducer (TAIR:AT2G23460.1); Has 2808 Blast hits to 2801 proteins in 342 species: Archae - 0; Bacteria - 2; Metazoa - 1996; Fungi - 411; Plants - 232; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT1G31930.1p  transcript_id AT1G31930.1  protein_id AT1G31930.1p  transcript_id AT1G31930.1  
At1g31930	chr1:011465832	0.0	W/11465832-11466755,11466849-11466986,11467074-11467178,11467266-11467445,11467524-11467698,11467780-11468036,11468117-11468289,11468367-11468961	AT1G31930.2 CDS  gene_syn F5M6.7, F5M6_7, XLG3, extra-large GTP-binding protein 3  gene XLG3  function Encodes XLG3 (extra-large G protein 3) that shows significant similarity to the G protein alpha subunit in its C terminal region. Involved in the regulation of root morphological and growth responses.  go_function signal transducer activity|GO:0004871||IEA  go_function guanyl nucleotide binding|GO:0019001||IEA  go_component nucleus|GO:0005634|17999646|IDA  go_process G-protein coupled receptor protein signaling pathway|GO:0007186||ISS  go_process gravitropism|GO:0009630|18397373|IGI  go_process thigmotropism|GO:0009652|18397373|IGI  go_process response to ethylene stimulus|GO:0009723|18397373|IMP  go_process response to abscisic acid stimulus|GO:0009737|17999646|IGI  go_process response to sucrose stimulus|GO:0009744|17999646|IGI  go_process response to glucose stimulus|GO:0009749|17999646|IGI  go_process response to fructose stimulus|GO:0009750|17999646|IGI  go_process root morphogenesis|GO:0010015|17999646|IGI  go_process response to mannitol stimulus|GO:0010555|17999646|IGI  go_process root development|GO:0048364|18397373|IGI  go_function signal transducer activity|GO:0004871||ISS  product XLG3 (extra-large GTP-binding protein 3); guanyl nucleotide binding / signal transducer  note extra-large GTP-binding protein 3 (XLG3); FUNCTIONS IN: signal transducer activity, guanyl nucleotide binding; INVOLVED IN: in 11 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Guanine nucleotide binding protein (G-protein), alpha subunit (InterPro:IPR001019), G protein alpha subunit, helical insertion (InterPro:IPR011025); BEST Arabidopsis thaliana protein match is: XLG1 (EXTRA-LARGE G-PROTEIN 1); guanyl nucleotide binding / signal transducer (TAIR:AT2G23460.1); Has 2808 Blast hits to 2801 proteins in 342 species: Archae - 0; Bacteria - 2; Metazoa - 1996; Fungi - 411; Plants - 232; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).  protein_id AT1G31930.2p  transcript_id AT1G31930.2  protein_id AT1G31930.2p  transcript_id AT1G31930.2  
At1g31935	chr1:011469482	0.0	W/11469482-11470010	AT1G31935.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G31935.1  
At1g31940	chr1:011470293	0.0	C/11470293-11470523,11470621-11470800,11471089-11471154	AT1G31940.1 CDS  gene_syn F5M6.6  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31940.1p  transcript_id AT1G31940.1  protein_id AT1G31940.1p  transcript_id AT1G31940.1  
At1g31950	chr1:011475807	0.0	W/11475807-11476070,11476158-11476428,11476528-11476912,11477003-11477221,11477313-11477445,11477557-11477805,11477895-11478194	AT1G31950.1 CDS  gene_syn F5M6.5  go_component membrane|GO:0016020|17432890|IDA  go_process metabolic process|GO:0008152||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function lyase activity|GO:0016829||IEA  product terpene synthase/cyclase family protein  note terpene synthase/cyclase family protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase/cyclase family protein (TAIR:AT3G14520.1); Has 1072 Blast hits to 1063 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1069; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G31950.1p  transcript_id AT1G31950.1  protein_id AT1G31950.1p  transcript_id AT1G31950.1  
At1g31960	chr1:011479133	0.0	C/11479133-11479654	AT1G31960.1 CDS  gene_syn F5M6.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31960.1p  transcript_id AT1G31960.1  protein_id AT1G31960.1p  transcript_id AT1G31960.1  
At1g31970	chr1:011479921	0.0	W/11479921-11480407,11480489-11480619,11480718-11480825,11480915-11480995,11481150-11481228,11481333-11481418,11481498-11481554,11481637-11481704,11481788-11481856,11481950-11482043,11482139-11482303,11482408-11482500,11482612-11482707	AT1G31970.1 CDS  gene_syn F5M6.3, STRESS RESPONSE SUPPRESSOR 1, STRS1  gene STRS1  go_function nucleic acid binding|GO:0003676||IEA  go_function helicase activity|GO:0004386||IEA  go_function ATP binding|GO:0005524||IEA  go_function ATP-dependent helicase activity|GO:0008026||IEA  go_function ATP-dependent helicase activity|GO:0008026||ISS  product STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding  note STRESS RESPONSE SUPPRESSOR 1 (STRS1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ethylene-responsive DEAD box RNA helicase, putative (RH30) (TAIR:AT5G63120.2); Has 37992 Blast hits to 33273 proteins in 1868 species: Archae - 587; Bacteria - 13443; Metazoa - 8652; Fungi - 3891; Plants - 1806; Viruses - 87; Other Eukaryotes - 9526 (source: NCBI BLink).  protein_id AT1G31970.1p  transcript_id AT1G31970.1  protein_id AT1G31970.1p  transcript_id AT1G31970.1  
At1g31990	chr1:011488205	0.0	W/11488205-11489182	AT1G31990.1 CDS  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G31990.1p  transcript_id AT1G31990.1  protein_id AT1G31990.1p  transcript_id AT1G31990.1  
At1g31983	chr1:011501674	0.0	C/11501674-11503237	AT1G31983.1 pseudogenic_transcript  pseudo  gene_syn T12O21.18  note pseudogene, hypothetical protein  
At1g31993	chr1:011503576	0.0	W/11503576-11507662	AT1G31993.1 mRNA_TE_gene  pseudo  gene_syn T12O21.11  note Transposable element gene, gypsy-like retrotransposon family, has a 3.8e-142 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)  
At1g32000	chr1:011508285	0.0	C/11508285-11508497,11508577-11508909	AT1G32000.1 CDS  gene_syn T12O21.10, T12O21_10  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G38190.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32000.1p  transcript_id AT1G32000.1  protein_id AT1G32000.1p  transcript_id AT1G32000.1  
At1g32010	chr1:011509341	0.0	C/11509341-11510237,11510335-11511077,11511173-11512040	AT1G32010.1 CDS  gene_syn T12O21.9, T12O21_9  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product myosin heavy chain-related  note myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G38190.1); Has 709 Blast hits to 568 proteins in 132 species: Archae - 10; Bacteria - 80; Metazoa - 233; Fungi - 44; Plants - 68; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).  protein_id AT1G32010.1p  transcript_id AT1G32010.1  protein_id AT1G32010.1p  transcript_id AT1G32010.1  
At1g32020	chr1:011512552	0.0	C/11512552-11513067	AT1G32020.1 CDS  gene_syn T12O21.8, T12O21_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G26030.3); Has 795 Blast hits to 778 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 795; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32020.1p  transcript_id AT1G32020.1  protein_id AT1G32020.1p  transcript_id AT1G32020.1  
At1g32030	chr1:011514594	0.0	W/11514594-11515595	AT1G32030.1 CDS  gene_syn T12O21.7, T12O21_7  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||IEA  go_component cellular_component|GO:0005575||ND  product DNA binding  note DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G24050.1); Has 54 Blast hits to 54 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32030.1p  transcript_id AT1G32030.1  protein_id AT1G32030.1p  transcript_id AT1G32030.1  
At1g32040	chr1:011518418	0.0	W/11518418-11520070	AT1G32040.1 mRNA_TE_gene  pseudo  gene_syn T12O21.6, T12O21_6  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1)  
At1g32045	chr1:011520689	0.0	C/11520689-11520876	AT1G32045.1 mRNA_TE_gene  pseudo  gene_syn T12O21.17  note Transposable element gene, gypsy-like retrotransposon family, has a 5.7e-07 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)  
At1g32049	chr1:011527728	0.0	W/11527728-11528207	AT1G32049.1 pseudogenic_transcript  pseudo  function unknown pseudogene  
At1g32050	chr1:011528616	0.0	W/11528616-11528678,11529142-11529234,11529313-11529375,11529468-11529501,11529618-11529740,11529839-11529901,11530011-11530104,11530191-11530236,11530320-11530387,11530644-11530692,11530775-11530840,11530942-11530974	AT1G32050.1 CDS  gene_syn T12O21.5, T12O21_5  go_component plasma membrane|GO:0005886|15060130|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_process protein transport|GO:0015031||IEA  go_component mitochondrion|GO:0005739|14671022|IDA  go_function transmembrane transporter activity|GO:0022857||ISS  product secretory carrier membrane protein (SCAMP) family protein  note secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier membrane protein (SCAMP) family protein (TAIR:AT2G20840.1); Has 522 Blast hits to 522 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 335; Fungi - 12; Plants - 120; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).  protein_id AT1G32050.1p  transcript_id AT1G32050.1  protein_id AT1G32050.1p  transcript_id AT1G32050.1  
At1g32060	chr1:011532668	0.0	W/11532668-11533191,11533460-11533544,11533645-11533729,11533810-11534054,11534158-11534406	AT1G32060.1 CDS  gene_syn PHOSPHORIBULOKINASE, PRK, T12O21.4, T12O21_4  gene PRK  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast thylakoid membrane|GO:0009535|15322131|IDA  go_component chloroplast stroma|GO:0009570|16207701|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component apoplast|GO:0048046|18538804|IDA  go_process defense response to bacterium|GO:0042742|17028151|IEP  go_component stromule|GO:0010319|16923014|IDA  go_process biosynthetic process|GO:0009058||ISS  go_process response to cold|GO:0009409|16923014|IEP  go_process peptidyl-cysteine S-nitrosylation|GO:0018119|18297659|IDA  go_function protein binding|GO:0005515|16258009|IPI  go_function ATP binding|GO:0005524||ISS  go_function phosphoribulokinase activity|GO:0008974||ISS  product PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding  note PHOSPHORIBULOKINASE (PRK); FUNCTIONS IN: protein binding, phosphoribulokinase activity, ATP binding; INVOLVED IN: response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation, biosynthetic process; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Phosphoribulokinase (InterPro:IPR006082); BEST Arabidopsis thaliana protein match is: uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative (TAIR:AT3G27440.1); Has 3778 Blast hits to 3778 proteins in 1337 species: Archae - 19; Bacteria - 2109; Metazoa - 288; Fungi - 89; Plants - 839; Viruses - 2; Other Eukaryotes - 432 (source: NCBI BLink).  protein_id AT1G32060.1p  transcript_id AT1G32060.1  protein_id AT1G32060.1p  transcript_id AT1G32060.1  
At1g32070	chr1:011534851	0.0	C/11534851-11534927,11535025-11535118,11535225-11535337,11535458-11535569,11535658-11535856,11535933-11535993,11536101-11536177,11536249-11536289	AT1G32070.3 CDS  gene_syn ACETYLTRANSFERASE, ATNSI, NUCLEAR SHUTTLE INTERACTING, T12O21.3, T12O21_3  gene ATNSI  function Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|12837950|IDA  go_process metabolic process|GO:0008152||ISS  go_process pathogenesis|GO:0009405|15452236|IMP  go_process spread of virus within host|GO:0046739|15452236|IMP  go_function N-acetyltransferase activity|GO:0008080|12837950|IDA  go_function N-acetyltransferase activity|GO:0008080||ISS  product ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase  note NUCLEAR SHUTTLE INTERACTING (ATNSI); FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: pathogenesis, spread of virus within host, metabolic process; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT1G26220.1); Has 1247 Blast hits to 1247 proteins in 335 species: Archae - 15; Bacteria - 872; Metazoa - 1; Fungi - 11; Plants - 52; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT1G32070.3p  transcript_id AT1G32070.3  protein_id AT1G32070.3p  transcript_id AT1G32070.3  
At1g32070	chr1:011534851	0.0	C/11534851-11534927,11535025-11535118,11535225-11535340,11535458-11535569,11535658-11535856,11535933-11535993,11536101-11536174,11536249-11536289	AT1G32070.1 CDS  gene_syn ACETYLTRANSFERASE, ATNSI, NUCLEAR SHUTTLE INTERACTING, T12O21.3, T12O21_3  gene ATNSI  function Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|12837950|IDA  go_process metabolic process|GO:0008152||ISS  go_process pathogenesis|GO:0009405|15452236|IMP  go_process spread of virus within host|GO:0046739|15452236|IMP  go_function N-acetyltransferase activity|GO:0008080|12837950|IDA  go_function N-acetyltransferase activity|GO:0008080||ISS  product ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase  note NUCLEAR SHUTTLE INTERACTING (ATNSI); FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: pathogenesis, spread of virus within host, metabolic process; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT1G26220.1); Has 1247 Blast hits to 1247 proteins in 336 species: Archae - 15; Bacteria - 874; Metazoa - 1; Fungi - 9; Plants - 52; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT1G32070.1p  transcript_id AT1G32070.1  protein_id AT1G32070.1p  transcript_id AT1G32070.1  
At1g32070	chr1:011534851	0.0	C/11534851-11534927,11535025-11535118,11535225-11535340,11535458-11535569,11535658-11535856,11535933-11535993,11536101-11536177,11536249-11536289	AT1G32070.2 CDS  gene_syn ACETYLTRANSFERASE, ATNSI, NUCLEAR SHUTTLE INTERACTING, T12O21.3, T12O21_3  gene ATNSI  function Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature.  go_component chloroplast|GO:0009507|18431481|IDA  go_component nucleus|GO:0005634|12837950|IDA  go_process metabolic process|GO:0008152||ISS  go_process pathogenesis|GO:0009405|15452236|IMP  go_process spread of virus within host|GO:0046739|15452236|IMP  go_function N-acetyltransferase activity|GO:0008080|12837950|IDA  go_function N-acetyltransferase activity|GO:0008080||ISS  product ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase  note NUCLEAR SHUTTLE INTERACTING (ATNSI); FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: pathogenesis, spread of virus within host, metabolic process; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: GCN5-related N-acetyltransferase (GNAT) family protein (TAIR:AT1G26220.1); Has 1247 Blast hits to 1247 proteins in 336 species: Archae - 15; Bacteria - 874; Metazoa - 1; Fungi - 9; Plants - 52; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).  protein_id AT1G32070.2p  transcript_id AT1G32070.2  protein_id AT1G32070.2p  transcript_id AT1G32070.2  
At1g32080	chr1:011537572	0.0	C/11537572-11537722,11537821-11537950,11538020-11538197,11538278-11538387,11538488-11538603,11538692-11538953,11539093-11539408,11539481-11539756	AT1G32080.1 CDS  gene_syn F3C3.12  go_component chloroplast|GO:0009507|15028209|IDA  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast envelope|GO:0009941|12766230|IDA  go_component chloroplast envelope|GO:0009941|12938931|IDA  go_component membrane|GO:0016020|17432890|IDA  go_component chloroplast inner membrane|GO:0009706|12766230|IDA  product membrane protein, putative  note membrane protein, putative; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LrgB-like protein (InterPro:IPR007300); Has 1780 Blast hits to 1773 proteins in 641 species: Archae - 17; Bacteria - 1596; Metazoa - 0; Fungi - 36; Plants - 30; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).  protein_id AT1G32080.1p  transcript_id AT1G32080.1  protein_id AT1G32080.1p  transcript_id AT1G32080.1  
At1g32090	chr1:011540244	0.0	C/11540244-11540609,11540696-11540929,11541019-11541343,11541438-11541683,11541763-11542103,11542178-11542258,11542339-11542458,11542542-11542643,11542723-11542858,11542955-11543107,11543725-11544041	AT1G32090.1 CDS  gene_syn F3C3.11, F3C3_11  go_component plasma membrane|GO:0005886|14506206|IDA  go_component plasma membrane|GO:0005886|17317660|IDA  go_component plasma membrane|GO:0005886|16618929|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product early-responsive to dehydration protein-related / ERD protein-related  note early-responsive to dehydration protein-related / ERD protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: early-responsive to dehydration protein-related / ERD protein-related (TAIR:AT3G21620.1); Has 966 Blast hits to 832 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 487; Plants - 255; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G32090.1p  transcript_id AT1G32090.1  protein_id AT1G32090.1p  transcript_id AT1G32090.1  
At1g32100	chr1:011546472	0.0	C/11546472-11546632,11546762-11546965,11547076-11547316,11547606-11547953	AT1G32100.1 CDS  gene_syn ATPRR1, F3C3.10, F3C3_10, PINORESINOL REDUCTASE 1, PRR1, PSEUDO-RESPONSE REGULATOR 1  gene PRR1  function Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.  go_component cellular_component|GO:0005575||ND  go_process lignan biosynthetic process|GO:0009807|18347017|IDA  go_function pinoresinol reductase activity|GO:0010283|10066819|ISS  go_function pinoresinol reductase activity|GO:0010283|18347017|IDA  product PRR1 (PINORESINOL REDUCTASE 1); pinoresinol reductase  note PINORESINOL REDUCTASE 1 (PRR1); FUNCTIONS IN: pinoresinol reductase activity; INVOLVED IN: lignan biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: PRR2 (PINORESINOL REDUCTASE 2); pinoresinol reductase (TAIR:AT4G13660.1); Has 1323 Blast hits to 1323 proteins in 312 species: Archae - 20; Bacteria - 479; Metazoa - 2; Fungi - 285; Plants - 389; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink).  protein_id AT1G32100.1p  transcript_id AT1G32100.1  protein_id AT1G32100.1p  transcript_id AT1G32100.1  
At1g32110	chr1:011552177	0.0	C/11552177-11552310	AT1G32110.1 pseudogenic_transcript  pseudo  gene_syn F3C3.16  note pseudogene, hypothetical protein  
At1g32120	chr1:011552926	0.0	W/11552926-11554960,11555041-11555817,11557161-11557521,11558161-11558608	AT1G32120.1 CDS  gene_syn F3C3.9, F3C3_9  go_component membrane|GO:0016020|17432890|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16050.1); Has 14952 Blast hits to 8053 proteins in 439 species: Archae - 2; Bacteria - 783; Metazoa - 6894; Fungi - 2054; Plants - 825; Viruses - 164; Other Eukaryotes - 4230 (source: NCBI BLink).  protein_id AT1G32120.1p  transcript_id AT1G32120.1  protein_id AT1G32120.1p  transcript_id AT1G32120.1  
At1g32130	chr1:011559146	0.0	C/11559146-11559244,11559465-11559636,11559726-11559782,11559875-11559966,11560044-11560121,11560209-11560271,11560357-11560486,11560568-11560788,11560872-11560991,11561078-11561534,11561767-11561786	AT1G32130.1 CDS  gene_syn F3C3.8, F3C3_8  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TFIIS N-terminal (InterPro:IPR017923), IWS1, C-terminal (InterPro:IPR008654); BEST Arabidopsis thaliana protein match is: IWS1 C-terminus family protein (TAIR:AT4G19000.1); Has 907 Blast hits to 871 proteins in 182 species: Archae - 4; Bacteria - 14; Metazoa - 417; Fungi - 195; Plants - 42; Viruses - 8; Other Eukaryotes - 227 (source: NCBI BLink).  protein_id AT1G32130.1p  transcript_id AT1G32130.1  protein_id AT1G32130.1p  transcript_id AT1G32130.1  
At1g32140	chr1:011562742	0.0	C/11562742-11563326,11563643-11564833	AT1G32140.1 CDS  gene_syn F3C3.15, F3C3_15  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G19890.1); Has 886 Blast hits to 510 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 886; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32140.1p  transcript_id AT1G32140.1  protein_id AT1G32140.1p  transcript_id AT1G32140.1  
At1g32150	chr1:011566022	0.0	W/11566022-11566120,11566203-11566262,11566338-11566412,11566636-11566725,11566814-11566873,11566953-11567122,11567247-11567301,11567390-11567420,11567527-11567759,11567832-11567909,11568004-11568129,11568225-11568317	AT1G32150.1 CDS  gene_syn F3C3.7, F3C3_7  go_component nucleus|GO:0005634||IEA  go_component chloroplast|GO:0009507||IEA  go_process transcription, DNA-dependent|GO:0006351||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_process regulation of transcription|GO:0045449||IEA  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700|11906833|ISS  product bZIP transcription factor family protein  note bZIP transcription factor family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: transcription, DNA-dependent, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: bZIP transcription factor family protein (TAIR:AT2G35530.1); Has 4481 Blast hits to 3076 proteins in 314 species: Archae - 9; Bacteria - 333; Metazoa - 1321; Fungi - 512; Plants - 1017; Viruses - 24; Other Eukaryotes - 1265 (source: NCBI BLink).  protein_id AT1G32150.1p  transcript_id AT1G32150.1  protein_id AT1G32150.1p  transcript_id AT1G32150.1  
At1g32160	chr1:011568701	0.0	W/11568701-11568811,11568999-11569285,11569419-11570241	AT1G32160.1 CDS  gene_syn F3C3.6, F3C3_6  go_component chloroplast|GO:0009507|18431481|IDA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17800.2); Has 83 Blast hits to 83 proteins in 18 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).  protein_id AT1G32160.1p  transcript_id AT1G32160.1  protein_id AT1G32160.1p  transcript_id AT1G32160.1  
At1g32170	chr1:011575434	0.0	W/11575434-11575620,11575717-11575817,11576227-11576435,11577242-11577776	AT1G32170.1 CDS  gene_syn F3C3.5, F3C3_5, XTH30, XTR4, XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4, XYLOGLUCAN ENDOTRANSGLYCOSYLASE-RELATED PROTEIN  gene XTR4  function xyloglucan endotransglycosylase-related protein (XTR4)  go_component cell wall|GO:0005618||IEA  go_component endomembrane system|GO:0012505||IEA  go_component apoplast|GO:0048046||IEA  go_process carbohydrate metabolic process|GO:0005975||IEA  go_process cellular glucan metabolic process|GO:0006073||IEA  go_function hydrolase activity, hydrolyzing O-glycosyl compounds|GO:0004553||IEA  go_function xyloglucan:xyloglucosyl transferase activity|GO:0016762||IEA  go_function hydrolase activity, acting on glycosyl bonds|GO:0016798||ISS  product XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4); hydrolase, acting on glycosyl bonds / hydrolase, hydrolyzing O-glycosyl compounds / xyloglucan:xyloglucosyl transferase  note XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4 (XTR4); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (TAIR:AT4G18990.1); Has 1302 Blast hits to 1296 proteins in 208 species: Archae - 2; Bacteria - 178; Metazoa - 0; Fungi - 258; Plants - 796; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).  protein_id AT1G32170.1p  transcript_id AT1G32170.1  protein_id AT1G32170.1p  transcript_id AT1G32170.1  
At1g32172	chr1:011578506	0.0	W/11578506-11580547	AT1G32172.1 ncRNA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product other RNA  transcript_id AT1G32172.1  
At1g32180	chr1:011586516	0.0	C/11586516-11588261,11588339-11589167,11589287-11589651	AT1G32180.1 CDS  gene_syn ATCSLD6, CELLULOSE SYNTHASE LIKE D6, CSLD6, F3C3.4, F3C3_4  gene ATCSLD6  function encodes a gene similar to cellulose synthase  go_component membrane|GO:0016020||IEA  go_process cellulose biosynthetic process|GO:0030244||IEA  go_process polysaccharide biosynthetic process|GO:0000271||ISS  go_process plant-type cell wall biogenesis|GO:0009832||ISS  go_function transferase activity, transferring glycosyl groups|GO:0016757||ISS  go_function cellulose synthase activity|GO:0016759||ISS  product ATCSLD6; cellulose synthase/ transferase, transferring glycosyl groups  note ATCSLD6; FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: CSLD2 (CELLULOSE-SYNTHASE LIKE D2); cellulose synthase/ transferase, transferring glycosyl groups (TAIR:AT5G16910.1); Has 2240 Blast hits to 1820 proteins in 404 species: Archae - 4; Bacteria - 912; Metazoa - 5; Fungi - 12; Plants - 1249; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).  protein_id AT1G32180.1p  transcript_id AT1G32180.1  protein_id AT1G32180.1p  transcript_id AT1G32180.1  
At1g32190	chr1:011593059	0.0	C/11593059-11593676,11593769-11593816,11594172-11594408,11594628-11594664,11595403-11595731	AT1G32190.1 CDS  gene_syn F3C3.3, F3C3_3  go_component plasma membrane|GO:0005886|17317660|IDA  go_process N-terminal protein myristoylation|GO:0006499|12912986|IEA  product unknown protein  note INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24320.1); Has 8192 Blast hits to 4778 proteins in 522 species: Archae - 0; Bacteria - 690; Metazoa - 5331; Fungi - 155; Plants - 259; Viruses - 14; Other Eukaryotes - 1743 (source: NCBI BLink).  protein_id AT1G32190.1p  transcript_id AT1G32190.1  protein_id AT1G32190.1p  transcript_id AT1G32190.1  
At1g32190	chr1:011593059	0.0	C/11593059-11593676,11593769-11593816,11594172-11594408,11594633-11594664,11595403-11595481	AT1G32190.2 CDS  gene_syn F3C3.3, F3C3_3  go_component plasma membrane|GO:0005886|17317660|IDA  product unknown protein  note unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24320.1); Has 7362 Blast hits to 3936 proteins in 436 species: Archae - 0; Bacteria - 501; Metazoa - 5129; Fungi - 69; Plants - 221; Viruses - 11; Other Eukaryotes - 1431 (source: NCBI BLink).  protein_id AT1G32190.2p  transcript_id AT1G32190.2  protein_id AT1G32190.2p  transcript_id AT1G32190.2  
At1g32200	chr1:011602223	0.0	C/11602223-11602357,11602448-11602561,11602657-11602776,11602852-11602930,11603033-11603143,11603241-11603302,11603375-11603476,11603580-11603637,11603791-11603888,11603986-11604072,11604194-11604291,11604686-11605001	AT1G32200.1 CDS  gene_syn ACT1, ACYLTRANSFERASE 1, ATS1, F3C3.13, F3C3_13, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE  gene ATS1  function Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|18633119|IDA  go_component plastid|GO:0009536|7678766|NAS  go_component chloroplast stroma|GO:0009570|16774646|IDA  go_process phosphatidylglycerol biosynthetic process|GO:0006655|16774646|IMP  go_function glycerol-3-phosphate O-acyltransferase activity|GO:0004366|7678766|IDA  product ATS1; glycerol-3-phosphate O-acyltransferase  note ATS1; FUNCTIONS IN: glycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: phosphatidylglycerol biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Glycerol-3-phosphate O-acyltransferase (InterPro:IPR016222); Has 333 Blast hits to 333 proteins in 85 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 269; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G32200.1p  transcript_id AT1G32200.1  protein_id AT1G32200.1p  transcript_id AT1G32200.1  
At1g32200	chr1:011602223	0.0	C/11602223-11602357,11602448-11602561,11602657-11602776,11602852-11602930,11603033-11603143,11603241-11603302,11603375-11603476,11603580-11603637,11603791-11603888,11603986-11604072,11604194-11604291,11604686-11605001	AT1G32200.2 CDS  gene_syn ACT1, ACYLTRANSFERASE 1, ATS1, F3C3.13, F3C3_13, GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE  gene ATS1  function Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol.  go_component chloroplast|GO:0009507|18431481|IDA  go_component plastid|GO:0009536|7678766|NAS  go_component chloroplast stroma|GO:0009570|16774646|IDA  go_process phosphatidylglycerol biosynthetic process|GO:0006655|16774646|IMP  go_function glycerol-3-phosphate O-acyltransferase activity|GO:0004366|7678766|IDA  product ATS1; glycerol-3-phosphate O-acyltransferase  note ATS1; FUNCTIONS IN: glycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: phosphatidylglycerol biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Glycerol-3-phosphate O-acyltransferase (InterPro:IPR016222); Has 333 Blast hits to 333 proteins in 85 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 0; Plants - 269; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).  protein_id AT1G32200.2p  transcript_id AT1G32200.2  protein_id AT1G32200.2p  transcript_id AT1G32200.2  
At1g32210	chr1:011606047	0.0	C/11606047-11606130,11606713-11606756,11606846-11606933,11607416-11607463,11607569-11607652	AT1G32210.1 CDS  gene_syn ATDAD1, DEFENDER AGAINST APOPTOTIC DEATH 1, F3C3.14, F3C3_14  gene ATDAD1  function Encodes protein involved in suppression of apoptosis. Complements a mammalian apoptosis suppressor mutation.  go_component endoplasmic reticulum|GO:0005783|16618929|IDA  go_component membrane|GO:0016020|9225471|ISS  go_process anti-apoptosis|GO:0006916|9225471|IGI  go_function molecular_function|GO:0003674||ND  product ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)  note DEFENDER AGAINST APOPTOTIC DEATH 1 (ATDAD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anti-apoptosis; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Defender against death DAD protein (InterPro:IPR003038); BEST Arabidopsis thaliana protein match is: DAD2 (DEFENDER AGAINST CELL DEATH 2) (TAIR:AT2G35520.1); Has 338 Blast hits to 338 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 77; Plants - 74; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G32210.1p  transcript_id AT1G32210.1  protein_id AT1G32210.1p  transcript_id AT1G32210.1  
At1g32220	chr1:011608038	0.0	W/11608038-11608126,11608348-11608450,11608538-11608626,11608720-11608775,11608871-11609017,11609101-11609226,11609311-11609591	AT1G32220.1 CDS  gene_syn F3C3.2, F3C3_2  go_component chloroplast|GO:0009507|18431481|IDA  go_component thylakoid|GO:0009579|16648217|IDA  go_component plastoglobule|GO:0010287|16414959|IDA  go_function catalytic activity|GO:0003824||IEA  go_function binding|GO:0005488||IEA  go_function coenzyme binding|GO:0050662||IEA  go_component plastoglobule|GO:0010287|16461379|IDA  go_process response to oxidative stress|GO:0006979|18614705|IMP  product binding / catalytic/ coenzyme binding  note binding / catalytic/ coenzyme binding; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: thylakoid, chloroplast, plastoglobule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: binding / catalytic/ coenzyme binding (TAIR:AT5G10730.1); Has 499 Blast hits to 498 proteins in 184 species: Archae - 8; Bacteria - 193; Metazoa - 18; Fungi - 98; Plants - 68; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).  protein_id AT1G32220.1p  transcript_id AT1G32220.1  protein_id AT1G32220.1p  transcript_id AT1G32220.1  
At1g32225	chr1:011610116	0.0	W/11610116-11610289	AT1G32225.1 CDS  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast.  protein_id AT1G32225.1p  transcript_id AT1G32225.1  protein_id AT1G32225.1p  transcript_id AT1G32225.1  
At1g32230	chr1:011613427	0.0	W/11613427-11614550,11614659-11614906,11615232-11615311,11615402-11615560,11615644-11615739,11615832-11615894	AT1G32230.1 CDS  gene_syn ARABIDOPSIS THALIANA P8 (INTERACTING PROTEIN), ATP8, CEO, CEO1, F3C3.1, F3C3_1, RADICAL-INDUCED CELL DEATH1, RCD1  gene RCD1  function Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.  go_component nucleus|GO:0005634|11018516|ISS  go_component nucleus|GO:0005634|17023541|IDA  go_component cytoplasm|GO:0005737|17023541|IDA  go_process response to superoxide|GO:0000303|11041881|IMP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|17023541|IMP  go_process nitric oxide biosynthetic process|GO:0006809|19054359|IMP  go_process response to oxidative stress|GO:0006979|11018516|IGI  go_process response to water deprivation|GO:0009414|15208394|IMP  go_process response to salt stress|GO:0009651|17023541|IMP  go_process response to ethylene stimulus|GO:0009723|11041881|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|11041881|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|11041881|IMP  go_process ethylene mediated signaling pathway|GO:0009873|11041881|IMP  go_process response to ozone|GO:0010193|11041881|IMP  go_process programmed cell death|GO:0012501|15728341|IMP  go_process response to hydrogen peroxide|GO:0042542|11041881|IMP  go_function protein binding|GO:0005515|11018516|IPI  product RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding  note RADICAL-INDUCED CELL DEATH1 (RCD1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO1 (SIMILAR TO RCD ONE 1); NAD+ ADP-ribosyltransferase (TAIR:AT2G35510.1); Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G32230.1p  transcript_id AT1G32230.1  protein_id AT1G32230.1p  transcript_id AT1G32230.1  
At1g32230	chr1:011613427	0.0	W/11613427-11614550,11614659-11614906,11615232-11615311,11615405-11615560,11615644-11615739,11615832-11615894	AT1G32230.2 CDS  gene_syn ARABIDOPSIS THALIANA P8 (INTERACTING PROTEIN), ATP8, CEO, CEO1, F3C3.1, F3C3_1, RADICAL-INDUCED CELL DEATH1, RCD1  gene RCD1  function Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.  go_component nucleus|GO:0005634|11018516|ISS  go_component nucleus|GO:0005634|17023541|IDA  go_component cytoplasm|GO:0005737|17023541|IDA  go_process response to superoxide|GO:0000303|11041881|IMP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|17023541|IMP  go_process nitric oxide biosynthetic process|GO:0006809|19054359|IMP  go_process response to oxidative stress|GO:0006979|11018516|IGI  go_process response to water deprivation|GO:0009414|15208394|IMP  go_process response to salt stress|GO:0009651|17023541|IMP  go_process response to ethylene stimulus|GO:0009723|11041881|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|11041881|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|11041881|IMP  go_process ethylene mediated signaling pathway|GO:0009873|11041881|IMP  go_process response to ozone|GO:0010193|11041881|IMP  go_process programmed cell death|GO:0012501|15728341|IMP  go_process response to hydrogen peroxide|GO:0042542|11041881|IMP  go_function protein binding|GO:0005515|11018516|IPI  product RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding  note RADICAL-INDUCED CELL DEATH1 (RCD1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO1 (SIMILAR TO RCD ONE 1); NAD+ ADP-ribosyltransferase (TAIR:AT2G35510.1); Has 99 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).  protein_id AT1G32230.2p  transcript_id AT1G32230.2  protein_id AT1G32230.2p  transcript_id AT1G32230.2  
At1g32230	chr1:011613427	0.0	W/11613427-11614550,11614659-11614906,11615232-11615311,11615405-11615560,11615644-11615748	AT1G32230.3 CDS  gene_syn ARABIDOPSIS THALIANA P8 (INTERACTING PROTEIN), ATP8, CEO, CEO1, F3C3.1, F3C3_1, RADICAL-INDUCED CELL DEATH1, RCD1  gene RCD1  function Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.  go_component nucleus|GO:0005634|11018516|ISS  go_component nucleus|GO:0005634|17023541|IDA  go_component cytoplasm|GO:0005737|17023541|IDA  go_process response to superoxide|GO:0000303|11041881|IMP  go_process oxygen and reactive oxygen species metabolic process|GO:0006800|17023541|IMP  go_process nitric oxide biosynthetic process|GO:0006809|19054359|IMP  go_process response to oxidative stress|GO:0006979|11018516|IGI  go_process response to water deprivation|GO:0009414|15208394|IMP  go_process response to salt stress|GO:0009651|17023541|IMP  go_process response to ethylene stimulus|GO:0009723|11041881|IMP  go_process defense response to bacterium, incompatible interaction|GO:0009816|11041881|IMP  go_process jasmonic acid mediated signaling pathway|GO:0009867|11041881|IMP  go_process ethylene mediated signaling pathway|GO:0009873|11041881|IMP  go_process response to ozone|GO:0010193|11041881|IMP  go_process programmed cell death|GO:0012501|15728341|IMP  go_process response to hydrogen peroxide|GO:0042542|11041881|IMP  go_function protein binding|GO:0005515|11018516|IPI  product RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding  note RADICAL-INDUCED CELL DEATH1 (RCD1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic region (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: SRO1 (SIMILAR TO RCD ONE 1); NAD+ ADP-ribosyltransferase (TAIR:AT2G35510.1).  protein_id AT1G32230.3p  transcript_id AT1G32230.3  protein_id AT1G32230.3p  transcript_id AT1G32230.3  
At1g32240	chr1:011625882	0.0	C/11625882-11626007,11626726-11626786,11627720-11627864,11627996-11628041,11629471-11629547,11629644-11630355	AT1G32240.1 CDS  gene_syn F27G20.7, F27G20_7, KAN2, KANADI 2  gene KAN2  function Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.  go_process polarity specification of adaxial/abaxial axis|GO:0009944|17601823|IGI  go_process regulation of transcription|GO:0045449|11118137|TAS  go_process carpel development|GO:0048440|16623911|IGI  go_process ovule development|GO:0048481|16623911|IGI  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product KAN2 (KANADI 2); DNA binding / transcription factor  note KANADI 2 (KAN2); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: ovule development, carpel development, polarity specification of adaxial/abaxial axis, regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KAN (KANADI); transcription factor (TAIR:AT5G16560.1); Has 1029 Blast hits to 1025 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 17; Plants - 877; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).  protein_id AT1G32240.1p  transcript_id AT1G32240.1  protein_id AT1G32240.1p  transcript_id AT1G32240.1  
At1g32250	chr1:011639843	0.0	W/11639843-11640343	AT1G32250.1 CDS  gene_syn F27G20.1  go_function calcium ion binding|GO:0005509||IEA  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function calcium ion binding|GO:0005509||ISS  product calmodulin, putative  note calmodulin, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-Hand type (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin, putative (TAIR:AT3G03000.1); Has 17259 Blast hits to 13069 proteins in 1306 species: Archae - 0; Bacteria - 60; Metazoa - 7384; Fungi - 4408; Plants - 2940; Viruses - 0; Other Eukaryotes - 2467 (source: NCBI BLink).  protein_id AT1G32250.1p  transcript_id AT1G32250.1  protein_id AT1G32250.1p  transcript_id AT1G32250.1  
At1g32260	chr1:011640760	0.0	C/11640760-11641237,11641654-11641784	AT1G32260.1 CDS  gene_syn F27G20.13  go_component mitochondrion|GO:0005739||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35480.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32260.1p  transcript_id AT1G32260.1  protein_id AT1G32260.1p  transcript_id AT1G32260.1  
At1g32270	chr1:011642593	0.0	W/11642593-11643050,11643412-11643505,11643635-11643774,11643967-11644026,11644111-11644265,11644582-11644682,11644720-11644962	AT1G32270.1 CDS  gene_syn ATSYP24, F27G20.2, SYNTAXIN 24, SYP24  gene ATSYP24  function member of SYP2 Gene Family  go_function SNAP receptor activity|GO:0005484||IEA  go_function protein binding|GO:0005515||IEA  go_component integral to membrane|GO:0016021|10831610|TAS  go_process intra-Golgi vesicle-mediated transport|GO:0006891|11115874|TAS  go_process membrane fusion|GO:0006944|10831610|ISS  product ATSYP24; SNAP receptor/ protein binding  note ATSYP24; FUNCTIONS IN: protein binding, SNAP receptor activity; INVOLVED IN: membrane fusion, intra-Golgi vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil region (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: SYP23 (SYNTAXIN OF PLANTS 23); SNAP receptor (TAIR:AT4G17730.2); Has 943 Blast hits to 943 proteins in 150 species: Archae - 0; Bacteria - 4; Metazoa - 340; Fungi - 146; Plants - 392; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).  protein_id AT1G32270.1p  transcript_id AT1G32270.1  protein_id AT1G32270.1p  transcript_id AT1G32270.1  
At1g32280	chr1:011646220	0.0	W/11646220-11646535,11646794-11646816	AT1G32280.1 CDS  gene_syn F27G20.3  go_component endomembrane system|GO:0012505||IEA  go_process lipid transport|GO:0006869||ISS  go_function lipid binding|GO:0008289||ISS  product protease inhibitor/seed storage/lipid transfer protein (LTP) family protein  note protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:AT5G56480.1); Has 39 Blast hits to 39 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32280.1p  transcript_id AT1G32280.1  protein_id AT1G32280.1p  transcript_id AT1G32280.1  
At1g32290	chr1:011650222	0.0	C/11650222-11650337,11650441-11650567	AT1G32290.1 CDS  gene_syn F27G20.4  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 5 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).  protein_id AT1G32290.1p  transcript_id AT1G32290.1  protein_id AT1G32290.1p  transcript_id AT1G32290.1  
At1g32300	chr1:011651342	0.0	W/11651342-11652260,11652394-11652495,11652599-11653365	AT1G32300.1 CDS  gene_syn F27G20.8  go_component endomembrane system|GO:0012505||IEA  go_component membrane|GO:0016020||IEA  go_function catalytic activity|GO:0003824||IEA  go_function D-arabinono-1,4-lactone oxidase activity|GO:0003885||IEA  go_function oxidoreductase activity|GO:0016491||IEA  go_function FAD binding|GO:0050660||IEA  product FAD-binding domain-containing protein  note FAD-binding domain-containing protein; FUNCTIONS IN: oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding domain-containing protein (TAIR:AT5G56490.1); Has 1433 Blast hits to 1401 proteins in 423 species: Archae - 12; Bacteria - 808; Metazoa - 78; Fungi - 161; Plants - 138; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).  protein_id AT1G32300.1p  transcript_id AT1G32300.1  protein_id AT1G32300.1p  transcript_id AT1G32300.1  
At1g32310	chr1:011653619	0.0	W/11653619-11653769,11654130-11654240,11654498-11654538	AT1G32310.1 CDS  gene_syn F27G20.14  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 12 Blast hits to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32310.1p  transcript_id AT1G32310.1  protein_id AT1G32310.1p  transcript_id AT1G32310.1  
At1g32320	chr1:011655156	0.0	W/11655156-11656073	AT1G32320.1 CDS  gene_syn ATMKK10, F27G20.9  gene ATMKK10  function member of MAP Kinase Kinase  go_process protein amino acid phosphorylation|GO:0006468||IEA  go_function MAP kinase kinase activity|GO:0004708|11875555|TAS  go_function kinase activity|GO:0016301||ISS  product ATMKK10; MAP kinase kinase/ kinase  note ATMKK10; FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Serine/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), Serine/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MKK9 (MAP KINASE KINASE 9); MAP kinase kinase/ kinase/ protein kinase activator (TAIR:AT1G73500.1); Has 85972 Blast hits to 85062 proteins in 2566 species: Archae - 81; Bacteria - 7492; Metazoa - 37502; Fungi - 7512; Plants - 16953; Viruses - 498; Other Eukaryotes - 15934 (source: NCBI BLink).  protein_id AT1G32320.1p  transcript_id AT1G32320.1  protein_id AT1G32320.1p  transcript_id AT1G32320.1  
At1g32330	chr1:011657265	0.0	C/11657265-11657277,11657370-11658526,11659947-11660234	AT1G32330.1 CDS  gene_syn ATHSFA1D, F27G20.6, HEAT SHOCK TRANSCRIPTION FACTOR A1D, HSFA1D  gene ATHSFA1D  function member of Heat Stress Transcription Factor (Hsf) family  go_component nucleus|GO:0005634||IEA  go_process regulation of transcription, DNA-dependent|GO:0006355||IEA  go_function DNA binding|GO:0003677||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  go_function transcription factor activity|GO:0003700||ISS  product ATHSFA1D; DNA binding / transcription factor  note ATHSFA1D; FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: HSF1 (HEAT SHOCK FACTOR 1); DNA binding / protein binding / transcription factor (TAIR:AT4G17750.1); Has 1524 Blast hits to 1516 proteins in 178 species: Archae - 0; Bacteria - 6; Metazoa - 349; Fungi - 328; Plants - 517; Viruses - 2; Other Eukaryotes - 322 (source: NCBI BLink).  protein_id AT1G32330.1p  transcript_id AT1G32330.1  protein_id AT1G32330.1p  transcript_id AT1G32330.1  
At1g32337	chr1:011661815	0.0	W/11661815-11661934,11662084-11662122	AT1G32337.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product unknown protein  note unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46390.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32337.1p  transcript_id AT1G32337.1  protein_id AT1G32337.1p  transcript_id AT1G32337.1  
At1g32340	chr1:011663462	0.0	C/11663462-11663590,11663683-11663848,11663937-11664163,11664237-11664622,11664699-11665206,11665292-11665366,11665462-11666037	AT1G32340.1 CDS  gene_syn F27G20.5, NHL8  gene NHL8  function Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  go_process biological_process|GO:0008150||ND  product NHL8; protein binding / zinc ion binding  note NHL8; FUNCTIONS IN: protein binding, zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT3G14250.1); Has 2864 Blast hits to 2483 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 1555; Fungi - 382; Plants - 366; Viruses - 7; Other Eukaryotes - 554 (source: NCBI BLink).  protein_id AT1G32340.1p  transcript_id AT1G32340.1  protein_id AT1G32340.1p  transcript_id AT1G32340.1  
At1g32350	chr1:011667237	0.0	C/11667237-11667296,11667394-11667688,11667869-11668062,11668162-11668569	AT1G32350.1 CDS  gene_syn AOX1D, F27G20.12, alternative oxidase 1D  gene AOX1D  go_component mitochondrion|GO:0005739||IEA  go_component mitochondrial envelope|GO:0005740||IEA  go_process response to cyclopentenone|GO:0010583|18334669|IEP  go_process oxidation reduction|GO:0055114|9349280|TAS  go_function alternative oxidase activity|GO:0009916||ISS  product AOX1D (alternative oxidase 1D); alternative oxidase  note alternative oxidase 1D (AOX1D); FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction, response to cyclopentenone; LOCATED IN: mitochondrial envelope, mitochondrion; EXPRESSED IN: stem, sepal, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: AOX1A (ALTERNATIVE OXIDASE 1A); alternative oxidase (TAIR:AT3G22370.1); Has 1055 Blast hits to 1055 proteins in 175 species: Archae - 0; Bacteria - 81; Metazoa - 6; Fungi - 138; Plants - 257; Viruses - 0; Other Eukaryotes - 573 (source: NCBI BLink).  protein_id AT1G32350.1p  transcript_id AT1G32350.1  protein_id AT1G32350.1p  transcript_id AT1G32350.1  
At1g32360	chr1:011673325	0.0	W/11673325-11674189,11674873-11675162	AT1G32360.1 CDS  gene_syn F27G20.10  go_component cellular_component|GO:0005575||ND  go_process regulation of transcription|GO:0045449|11118137|TAS  go_function nucleic acid binding|GO:0003676||ISS  go_function transcription factor activity|GO:0003700|11118137|ISS  product zinc finger (CCCH-type) family protein  note zinc finger (CCCH-type) family protein; FUNCTIONS IN: transcription factor activity, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein (TAIR:AT2G35430.1); Has 12570 Blast hits to 5044 proteins in 533 species: Archae - 13; Bacteria - 2548; Metazoa - 4525; Fungi - 570; Plants - 3231; Viruses - 221; Other Eukaryotes - 1462 (source: NCBI BLink).  protein_id AT1G32360.1p  transcript_id AT1G32360.1  protein_id AT1G32360.1p  transcript_id AT1G32360.1  
At1g32361	chr1:011675531	0.0	W/11675531-11676529	AT1G32361.1 CDS  gene_syn ATL1F  gene ATL1F  function Putative RING-H2 finger protein ATL1F precursor.  go_function protein binding|GO:0005515||IEA  go_function zinc ion binding|GO:0008270||IEA  product ATL1F; protein binding / zinc ion binding  note ATL1F; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G35420.1); Has 6104 Blast hits to 6091 proteins in 217 species: Archae - 0; Bacteria - 6; Metazoa - 2127; Fungi - 433; Plants - 2478; Viruses - 39; Other Eukaryotes - 1021 (source: NCBI BLink).  protein_id AT1G32361.1p  transcript_id AT1G32361.1  protein_id AT1G32361.1p  transcript_id AT1G32361.1  
At1g32370	chr1:011677005	0.0	W/11677005-11677145,11677439-11677504,11677587-11677651,11677833-11677923,11678024-11678032	AT1G32370.4 CDS  gene_syn F5D14.14, F5D14_14, TOBAMOVIRUS MULTIPLICATION 2B, TOM2B, TTM1  gene TOM2B  function Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta.  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function molecular_function|GO:0003674||ND  product TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)  note TOBAMOVIRUS MULTIPLICATION 2B (TOM2B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: viral replication complex formation and maintenance; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32370.4p  transcript_id AT1G32370.4  protein_id AT1G32370.4p  transcript_id AT1G32370.4  
At1g32370	chr1:011677005	0.0	W/11677005-11677145,11677439-11677504,11677587-11677651,11677833-11677923,11678058-11678072	AT1G32370.3 CDS  gene_syn F5D14.14, F5D14_14, TOBAMOVIRUS MULTIPLICATION 2B, TOM2B, TTM1  gene TOM2B  function Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta.  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function molecular_function|GO:0003674||ND  product TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)  note TOBAMOVIRUS MULTIPLICATION 2B (TOM2B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: viral replication complex formation and maintenance; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32370.3p  transcript_id AT1G32370.3  protein_id AT1G32370.3p  transcript_id AT1G32370.3  
At1g32370	chr1:011677005	0.0	W/11677005-11677145,11677439-11677504,11677587-11677651,11677833-11677925,11678058-11678088	AT1G32370.2 CDS  gene_syn F5D14.14, F5D14_14, TOBAMOVIRUS MULTIPLICATION 2B, TOM2B, TTM1  gene TOM2B  function Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta.  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function molecular_function|GO:0003674||ND  product TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)  note TOBAMOVIRUS MULTIPLICATION 2B (TOM2B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: viral replication complex formation and maintenance; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32370.2p  transcript_id AT1G32370.2  protein_id AT1G32370.2p  transcript_id AT1G32370.2  
At1g32370	chr1:011677005	0.0	W/11677005-11677145,11677439-11677504,11677587-11677651,11677833-11677929	AT1G32370.1 CDS  gene_syn F5D14.14, F5D14_14, TOBAMOVIRUS MULTIPLICATION 2B, TOM2B, TTM1  gene TOM2B  function Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta.  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function molecular_function|GO:0003674||ND  product TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)  note TOBAMOVIRUS MULTIPLICATION 2B (TOM2B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: viral replication complex formation and maintenance; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 13 Blast hits to 13 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32370.1p  transcript_id AT1G32370.1  protein_id AT1G32370.1p  transcript_id AT1G32370.1  
At1g32375	chr1:011679230	0.0	W/11679230-11680084,11680169-11680303,11680401-11680679	AT1G32375.1 CDS  go_component endomembrane system|GO:0012505||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56390.1); Has 1338 Blast hits to 1299 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32375.1p  transcript_id AT1G32375.1  protein_id AT1G32375.1p  transcript_id AT1G32375.1  
At1g32380	chr1:011682033	0.0	W/11682033-11682176,11682589-11682753,11682840-11683088,11683168-11683311,11683399-11683566,11683644-11683713,11683877-11683958,11684049-11684229	AT1G32380.1 CDS  gene_syn F5D14.15, F5D14_15  go_component chloroplast|GO:0009507||IEA  go_process nucleoside metabolic process|GO:0009116||IEA  go_process ribonucleoside monophosphate biosynthetic process|GO:0009156||IEA  go_process nucleotide biosynthetic process|GO:0009165||IEA  go_process cellular biosynthetic process|GO:0044249||IEA  go_function magnesium ion binding|GO:0000287||IEA  go_function ribose phosphate diphosphokinase activity|GO:0004749||IEA  go_process nucleotide biosynthetic process|GO:0009165||ISS  go_function ribose phosphate diphosphokinase activity|GO:0004749||ISS  product ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2)  note ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2); FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI) (TAIR:AT2G35390.2); Has 8056 Blast hits to 7889 proteins in 1556 species: Archae - 182; Bacteria - 3337; Metazoa - 501; Fungi - 457; Plants - 129; Viruses - 7; Other Eukaryotes - 3443 (source: NCBI BLink).  protein_id AT1G32380.1p  transcript_id AT1G32380.1  protein_id AT1G32380.1p  transcript_id AT1G32380.1  
At1g32385	chr1:011685060	0.0	W/11685060-11685144	AT1G32385.1 snoRNA  gene_syn 52178.SNORNA00001  go_component small nucleolar ribonucleoprotein complex|GO:0005732||TAS  go_process rRNA modification|GO:0000154||TAS  go_function molecular_function|GO:0003674||ND  product snoRNA  note snoRNA  transcript_id AT1G32385.1  
At1g32390	chr1:011688129	0.0	W/11688129-11688707	AT1G32390.1 mRNA_TE_gene  pseudo  gene_syn F5D14.16, F5D14_16  note Transposable element gene, similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)  
At1g32400	chr1:011689393	0.0	C/11689393-11689500,11689585-11689794,11689949-11690053,11690182-11690262,11690429-11690528,11690635-11690873	AT1G32400.1 CDS  gene_syn F5D14.17, F5D14_17, TOBAMOVIRUS MULTIPLICATION 2A, TOM2A  gene TOM2A  function TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|12514139|ISS  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function protein binding|GO:0005515|12514139|IPI  product TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding  note TOBAMOVIRUS MULTIPLICATION 2A (TOM2A); FUNCTIONS IN: protein binding; INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 712 Blast hits to 709 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G32400.1p  transcript_id AT1G32400.1  protein_id AT1G32400.1p  transcript_id AT1G32400.1  
At1g32400	chr1:011689393	0.0	C/11689393-11689500,11689585-11689794,11689949-11690053,11690182-11690262,11690429-11690528,11690635-11690873	AT1G32400.2 CDS  gene_syn F5D14.17, F5D14_17, TOBAMOVIRUS MULTIPLICATION 2A, TOM2A  gene TOM2A  function TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|12514139|ISS  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function protein binding|GO:0005515|12514139|IPI  product TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding  note TOBAMOVIRUS MULTIPLICATION 2A (TOM2A); FUNCTIONS IN: protein binding; INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 712 Blast hits to 709 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G32400.2p  transcript_id AT1G32400.2  protein_id AT1G32400.2p  transcript_id AT1G32400.2  
At1g32400	chr1:011689393	0.0	C/11689393-11689500,11689585-11689794,11689949-11690053,11690182-11690262,11690429-11690528,11690635-11690873	AT1G32400.3 CDS  gene_syn F5D14.17, F5D14_17, TOBAMOVIRUS MULTIPLICATION 2A, TOM2A  gene TOM2A  function TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.  go_component vacuole|GO:0005773|15539469|IDA  go_component membrane|GO:0016020|12514139|ISS  go_process viral replication complex formation and maintenance|GO:0046786|12514139|IMP  go_function protein binding|GO:0005515|12514139|IPI  product TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding  note TOBAMOVIRUS MULTIPLICATION 2A (TOM2A); FUNCTIONS IN: protein binding; INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28770.1); Has 712 Blast hits to 709 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).  protein_id AT1G32400.3p  transcript_id AT1G32400.3  protein_id AT1G32400.3p  transcript_id AT1G32400.3  
At1g32410	chr1:011694398	0.0	W/11694398-11694496,11694606-11694645,11694857-11694941,11695099-11695297	AT1G32410.1 CDS  gene_syn F5D14.32  go_component vacuole|GO:0005773|15539469|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT3G11530.2); Has 303 Blast hits to 303 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G32410.1p  transcript_id AT1G32410.1  protein_id AT1G32410.1p  transcript_id AT1G32410.1  
At1g32410	chr1:011694398	0.0	W/11694398-11694496,11694606-11694645,11694857-11694941,11695099-11695297	AT1G32410.2 CDS  gene_syn F5D14.32  go_component vacuole|GO:0005773|15539469|IDA  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT3G11530.2); Has 303 Blast hits to 303 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G32410.2p  transcript_id AT1G32410.2  protein_id AT1G32410.2p  transcript_id AT1G32410.2  
At1g32410	chr1:011694398	0.0	W/11694398-11694496,11694606-11694645,11694857-11694941,11695099-11695297	AT1G32410.3 CDS  gene_syn F5D14.32  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT3G11530.2); Has 303 Blast hits to 303 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G32410.3p  transcript_id AT1G32410.3  protein_id AT1G32410.3p  transcript_id AT1G32410.3  
At1g32410	chr1:011694398	0.0	W/11694398-11694496,11694606-11694645,11694857-11694941,11695099-11695297	AT1G32410.4 CDS  gene_syn F5D14.32  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT3G11530.2); Has 303 Blast hits to 303 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G32410.4p  transcript_id AT1G32410.4  protein_id AT1G32410.4p  transcript_id AT1G32410.4  
At1g32410	chr1:011694398	0.0	W/11694398-11694496,11694606-11694645,11694857-11694941,11695099-11695297	AT1G32410.5 CDS  gene_syn F5D14.32  go_process transport|GO:0006810||ISS  go_function transporter activity|GO:0005215||ISS  product vacuolar protein sorting 55 family protein / VPS55 family protein  note vacuolar protein sorting 55 family protein / VPS55 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 55 family protein / VPS55 family protein (TAIR:AT3G11530.2); Has 303 Blast hits to 303 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 86; Plants - 47; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).  protein_id AT1G32410.5p  transcript_id AT1G32410.5  protein_id AT1G32410.5p  transcript_id AT1G32410.5  
At1g32415	chr1:011695611	0.0	W/11695611-11697896	AT1G32415.1 CDS  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product pentatricopeptide (PPR) repeat-containing protein  note pentatricopeptide (PPR) repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G53600.1); Has 18393 Blast hits to 5266 proteins in 142 species: Archae - 0; Bacteria - 4; Metazoa - 83; Fungi - 74; Plants - 17819; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).  protein_id AT1G32415.1p  transcript_id AT1G32415.1  protein_id AT1G32415.1p  transcript_id AT1G32415.1  
At1g32420	chr1:011701995	0.0	W/11701995-11702903	AT1G32420.1 CDS  gene_syn F5D14.20, F5D14_20  go_component chloroplast|GO:0009507||IEA  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated type 3 (InterPro:IPR013187), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G50220.1); Has 997 Blast hits to 983 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 995; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).  protein_id AT1G32420.1p  transcript_id AT1G32420.1  protein_id AT1G32420.1p  transcript_id AT1G32420.1  
At1g32430	chr1:011704932	0.0	C/11704932-11705012,11705177-11705625,11705713-11706325	AT1G32430.1 CDS  gene_syn F5D14.21, F5D14_21  go_component cellular_component|GO:0005575||ND  go_process biological_process|GO:0008150||ND  go_function molecular_function|GO:0003674||ND  product F-box family protein  note F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G47390.1); Has 543 Blast hits to 537 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 543; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).  protein_id AT1G32430.1p  transcript_id AT1G32430.1  protein_id AT1G32430.1p  transcript_id AT1G32430.1  
At1g32440	chr1:011712205	0.0	W/11712205-11712435,11712590-11712856,11712939-11713104,11713195-11713329,11713427-11713537,11713625-11713713,11713801-11713863,11713945-11714120,11714219-11714318,11714405-11714553,11714653-11714761,11714844-11714963	AT1G32440.1 CDS  gene_syn F5D14.22, F5D14_22, F5F19.10, F5F19_10, PKp3, plastidial pyruvate kinase 3  gene PKp3  function encodes a chloroplast pyruvate kinase beta subunit. The enzyme is less active than the other chloroplast pyruvate kinase beta subunit encoded by AT5G52920. Involved in seed oil biosynthesis. Can partially complement the AT5G52920 mutant.  go_component chloroplast|GO:0009507|18431481|IDA  go_component chloroplast stroma|GO:0009570|17557808|IDA  go_process glycolysis|GO:0006096||ISS  go_process fatty acid biosynthetic process|GO:0006633|17557808|IGI  go_function pyruvate kinase activity|GO:0004743|17557808|IDA  go_function pyruvate kinase activity|GO:0004743||ISS  product PKp3 (plastidial pyruvate kinase 3); pyruvate kinase  note plastidial pyruvate kinase 3 (PKp3); FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: glycolysis, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1); pyruvate kinase (TAIR:AT5G52920.1); Has 6925 Blast hits to 6881 proteins in 1514 species: Archae - 102; Bacteria - 3217; Metazoa - 483; Fungi - 168; Plants - 279; Viruses - 0; Other Eukaryotes - 2676 (source: NCBI BLink).  protein_id AT1G32440.1p  transcript_id AT1G32440.1  protein_id AT1G32440.1p  transcript_id AT1G32440.1  
At1g32450	chr1:011715337	0.0	C/11715337-11715747,11715842-11716340,11716420-11716991,11717085-11717302,11718958-11719072,11719778-11719807	AT1G32450.1 CDS  gene_syn F5D14.23, F5D14_23, NITRATE TRANSPORTER 1.5, NRT1.5  gene NRT1.5  function Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.  go_component plasma membrane|GO:0005886|18780802|IDA  go_component membrane|GO:0016020||ISS  go_process oligopeptide transport|GO:0006857||ISS  go_process response to nitrate|GO:0010167|18780802|IEP  go_process nitrate transport|GO:0015706|187808